Query 016253
Match_columns 392
No_of_seqs 317 out of 2353
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1azs_C GS-alpha; complex (lyas 100.0 1.6E-81 5.4E-86 626.5 26.7 367 9-392 1-394 (402)
2 3ohm_A Guanine nucleotide-bind 100.0 1.4E-81 4.8E-86 612.0 24.9 324 43-392 3-327 (327)
3 1cip_A Protein (guanine nucleo 100.0 2.9E-81 9.9E-86 617.5 26.0 347 22-392 7-353 (353)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 2.6E-80 9E-85 612.6 24.2 352 9-392 1-361 (362)
5 4fid_A G protein alpha subunit 100.0 5E-79 1.7E-83 596.2 23.5 323 45-392 3-336 (340)
6 2xtz_A Guanine nucleotide-bind 100.0 4E-77 1.4E-81 587.9 27.1 347 46-392 8-354 (354)
7 4dkx_A RAS-related protein RAB 99.8 5.5E-20 1.9E-24 168.9 11.9 119 217-383 58-176 (216)
8 1upt_A ARL1, ADP-ribosylation 99.8 1.3E-19 4.3E-24 157.5 13.5 123 217-383 47-169 (171)
9 1ky3_A GTP-binding protein YPT 99.8 1.2E-18 4E-23 152.7 17.8 127 218-386 55-181 (182)
10 1fzq_A ADP-ribosylation factor 99.8 9.1E-20 3.1E-24 161.6 10.4 121 219-383 58-178 (181)
11 3oes_A GTPase rhebl1; small GT 99.8 1E-18 3.5E-23 157.1 17.4 122 217-385 68-189 (201)
12 1r8s_A ADP-ribosylation factor 99.8 2.5E-19 8.7E-24 154.7 12.7 123 217-383 40-162 (164)
13 2bme_A RAB4A, RAS-related prot 99.8 8.5E-19 2.9E-23 154.7 16.2 121 217-385 55-175 (186)
14 1x3s_A RAS-related protein RAB 99.8 1E-18 3.5E-23 155.1 16.7 119 217-383 60-178 (195)
15 1c1y_A RAS-related protein RAP 99.8 8.8E-19 3E-23 151.3 15.8 119 217-381 47-165 (167)
16 3t5g_A GTP-binding protein RHE 99.8 1E-18 3.5E-23 153.6 16.1 122 217-385 50-171 (181)
17 2x77_A ADP-ribosylation factor 99.8 2.2E-19 7.7E-24 159.4 11.9 125 218-386 63-187 (189)
18 1z2a_A RAS-related protein RAB 99.8 4.6E-19 1.6E-23 153.2 13.4 118 217-383 50-167 (168)
19 2h57_A ADP-ribosylation factor 99.8 7.1E-19 2.4E-23 156.4 14.6 122 217-382 63-186 (190)
20 2bov_A RAla, RAS-related prote 99.8 2.1E-18 7.2E-23 154.6 17.6 123 217-386 58-180 (206)
21 2o52_A RAS-related protein RAB 99.8 4.7E-19 1.6E-23 159.4 13.0 121 217-385 70-190 (200)
22 1z0f_A RAB14, member RAS oncog 99.8 1.5E-18 5.3E-23 151.5 15.3 119 217-383 60-178 (179)
23 2a9k_A RAS-related protein RAL 99.8 1.4E-18 4.7E-23 152.9 15.0 123 217-386 62-184 (187)
24 1u8z_A RAS-related protein RAL 99.8 1.4E-18 4.9E-23 149.7 14.8 120 217-383 48-167 (168)
25 1f6b_A SAR1; gtpases, N-termin 99.8 3.6E-19 1.2E-23 160.2 11.0 128 220-380 68-196 (198)
26 1wms_A RAB-9, RAB9, RAS-relate 99.8 5.4E-18 1.9E-22 148.1 17.7 124 217-384 52-175 (177)
27 1m2o_B GTP-binding protein SAR 99.8 1E-18 3.5E-23 156.1 13.0 124 219-379 65-188 (190)
28 1moz_A ARL1, ADP-ribosylation 99.8 3.6E-19 1.2E-23 156.7 9.8 123 219-385 60-182 (183)
29 3tkl_A RAS-related protein RAB 99.8 5.3E-18 1.8E-22 150.8 17.4 121 217-385 61-181 (196)
30 2bcg_Y Protein YP2, GTP-bindin 99.8 4.7E-18 1.6E-22 153.0 17.1 120 217-384 53-172 (206)
31 1kao_A RAP2A; GTP-binding prot 99.8 4.9E-18 1.7E-22 146.1 16.2 119 217-382 47-165 (167)
32 1r2q_A RAS-related protein RAB 99.8 3.6E-18 1.2E-22 147.6 15.3 117 217-381 51-167 (170)
33 2efe_B Small GTP-binding prote 99.8 3.1E-18 1.1E-22 150.2 15.0 119 217-383 57-175 (181)
34 2gf9_A RAS-related protein RAB 99.8 1E-17 3.5E-22 148.8 18.5 120 217-384 67-186 (189)
35 3dz8_A RAS-related protein RAB 99.8 1.4E-18 4.9E-23 154.7 12.9 120 217-384 68-187 (191)
36 2h17_A ADP-ribosylation factor 99.8 8E-19 2.8E-23 155.0 11.2 118 219-380 63-180 (181)
37 2a5j_A RAS-related protein RAB 99.8 6.2E-18 2.1E-22 150.6 16.8 121 217-385 66-186 (191)
38 2hup_A RAS-related protein RAB 99.8 3.1E-18 1.1E-22 154.3 14.9 121 217-385 74-195 (201)
39 3tw8_B RAS-related protein RAB 99.8 6.8E-18 2.3E-22 147.6 16.5 122 217-387 54-175 (181)
40 1zbd_A Rabphilin-3A; G protein 99.8 1.1E-17 3.7E-22 150.1 18.0 120 217-384 53-172 (203)
41 1ek0_A Protein (GTP-binding pr 99.8 5E-18 1.7E-22 146.7 15.3 120 217-381 48-167 (170)
42 1z0j_A RAB-22, RAS-related pro 99.8 7.1E-18 2.4E-22 146.0 16.1 117 217-381 51-167 (170)
43 1z08_A RAS-related protein RAB 99.8 3.8E-18 1.3E-22 147.9 14.1 118 217-382 51-168 (170)
44 3bc1_A RAS-related protein RAB 99.8 7.2E-18 2.4E-22 149.1 15.8 121 220-387 69-189 (195)
45 2g6b_A RAS-related protein RAB 99.8 9.2E-18 3.1E-22 147.0 16.2 122 217-386 56-177 (180)
46 3kkq_A RAS-related protein M-R 99.8 9.8E-18 3.4E-22 147.6 16.3 120 217-383 62-182 (183)
47 1vg8_A RAS-related protein RAB 99.8 1.9E-17 6.4E-22 148.7 18.4 125 217-385 53-177 (207)
48 4dsu_A GTPase KRAS, isoform 2B 99.8 1.1E-17 3.8E-22 147.4 16.5 121 217-385 48-168 (189)
49 2ew1_A RAS-related protein RAB 99.8 9.8E-18 3.4E-22 151.6 16.0 121 217-385 71-191 (201)
50 2oil_A CATX-8, RAS-related pro 99.8 9.1E-18 3.1E-22 149.4 15.4 122 217-386 70-191 (193)
51 2fn4_A P23, RAS-related protei 99.8 8.7E-18 3E-22 146.9 15.0 122 217-385 53-174 (181)
52 3q85_A GTP-binding protein REM 99.8 9.6E-18 3.3E-22 145.4 14.1 121 217-384 47-168 (169)
53 2yc2_C IFT27, small RAB-relate 99.8 4E-18 1.4E-22 152.8 11.8 121 220-387 72-196 (208)
54 2il1_A RAB12; G-protein, GDP, 99.7 1.2E-17 4.3E-22 149.0 14.6 121 217-384 71-191 (192)
55 2atv_A RERG, RAS-like estrogen 99.7 1.6E-17 5.4E-22 148.5 14.8 121 217-385 72-193 (196)
56 3ihw_A Centg3; RAS, centaurin, 99.7 3.8E-17 1.3E-21 145.2 17.2 120 217-385 63-182 (184)
57 1g16_A RAS-related protein SEC 99.7 2.1E-17 7.2E-22 143.0 15.1 119 217-384 48-166 (170)
58 3reg_A RHO-like small GTPase; 99.7 1.6E-17 5.4E-22 148.2 14.7 123 217-385 67-190 (194)
59 2hxs_A RAB-26, RAS-related pro 99.7 4.6E-18 1.6E-22 148.7 10.6 122 220-386 55-176 (178)
60 2q3h_A RAS homolog gene family 99.7 3.2E-17 1.1E-21 146.8 15.9 134 217-386 64-198 (201)
61 2f7s_A C25KG, RAS-related prot 99.7 1.4E-17 4.8E-22 151.1 13.6 118 220-384 83-200 (217)
62 2fg5_A RAB-22B, RAS-related pr 99.7 3.3E-17 1.1E-21 146.1 15.4 119 217-383 68-186 (192)
63 3con_A GTPase NRAS; structural 99.7 4.7E-17 1.6E-21 144.2 16.1 123 217-387 65-187 (190)
64 1z06_A RAS-related protein RAB 99.7 2.4E-17 8.1E-22 146.4 14.0 119 217-382 65-187 (189)
65 2nzj_A GTP-binding protein REM 99.7 5.9E-17 2E-21 141.0 16.0 122 217-385 48-171 (175)
66 3cbq_A GTP-binding protein REM 99.7 1.7E-17 5.7E-22 149.0 12.6 121 217-384 68-189 (195)
67 1m7b_A RND3/RHOE small GTP-bin 99.7 6.2E-17 2.1E-21 143.2 16.0 131 217-383 51-183 (184)
68 2y8e_A RAB-protein 6, GH09086P 99.7 4.8E-17 1.7E-21 141.9 13.8 118 217-382 59-176 (179)
69 2fh5_B SR-beta, signal recogni 99.7 5.6E-17 1.9E-21 146.8 14.7 75 220-303 53-130 (214)
70 2ce2_X GTPase HRAS; signaling 99.7 1E-16 3.6E-21 137.4 15.4 118 217-382 47-164 (166)
71 3cpj_B GTP-binding protein YPT 99.7 4.2E-17 1.5E-21 149.1 13.7 119 217-383 58-176 (223)
72 3t1o_A Gliding protein MGLA; G 99.7 9.4E-17 3.2E-21 142.3 15.4 163 177-386 31-195 (198)
73 2erx_A GTP-binding protein DI- 99.7 5.7E-17 2E-21 140.3 13.0 119 217-382 47-166 (172)
74 1gwn_A RHO-related GTP-binding 99.7 1.7E-16 5.8E-21 143.7 16.6 131 217-383 72-204 (205)
75 1mh1_A RAC1; GTP-binding, GTPa 99.7 5.9E-17 2E-21 142.4 13.2 131 217-383 49-180 (186)
76 3o47_A ADP-ribosylation factor 99.7 1.3E-17 4.4E-22 162.5 9.7 133 201-383 195-327 (329)
77 3gj0_A GTP-binding nuclear pro 99.7 1.5E-17 5.1E-22 151.7 9.4 117 217-384 60-176 (221)
78 3cph_A RAS-related protein SEC 99.7 1.8E-16 6E-21 142.9 15.9 119 217-384 65-183 (213)
79 2p5s_A RAS and EF-hand domain 99.7 6.2E-17 2.1E-21 145.1 12.7 124 217-382 73-196 (199)
80 2gco_A H9, RHO-related GTP-bin 99.7 1.7E-16 5.7E-21 142.7 15.3 131 217-382 69-199 (201)
81 3lvq_E ARF-GAP with SH3 domain 99.7 6.6E-17 2.3E-21 165.6 14.0 132 202-383 353-484 (497)
82 2gf0_A GTP-binding protein DI- 99.7 1.1E-16 3.6E-21 142.7 13.4 120 217-384 52-172 (199)
83 4bas_A ADP-ribosylation factor 99.7 1.4E-16 4.8E-21 141.9 14.1 135 202-385 50-191 (199)
84 2j1l_A RHO-related GTP-binding 99.7 7.4E-17 2.5E-21 146.7 12.5 133 217-385 78-211 (214)
85 2fv8_A H6, RHO-related GTP-bin 99.7 2.4E-16 8.2E-21 142.3 15.6 133 217-385 69-202 (207)
86 4gzl_A RAS-related C3 botulinu 99.7 1.2E-16 4.2E-21 144.1 12.4 129 217-381 74-203 (204)
87 3bwd_D RAC-like GTP-binding pr 99.7 1.4E-16 4.9E-21 139.6 11.0 127 218-382 53-180 (182)
88 1ksh_A ARF-like protein 2; sma 99.7 3.9E-16 1.3E-20 137.8 11.5 124 217-384 58-181 (186)
89 2b6h_A ADP-ribosylation factor 99.6 2.2E-16 7.5E-21 141.1 9.0 133 200-382 58-190 (192)
90 3l0i_B RAS-related protein RAB 99.6 1.1E-17 3.6E-22 150.2 0.2 118 217-382 78-195 (199)
91 2wkq_A NPH1-1, RAS-related C3 99.6 4.6E-15 1.6E-19 142.8 18.7 131 217-383 199-330 (332)
92 2fu5_C RAS-related protein RAB 99.6 9.4E-16 3.2E-20 134.8 12.4 123 217-387 53-175 (183)
93 1zd9_A ADP-ribosylation factor 99.6 2.8E-16 9.6E-21 139.6 9.0 123 217-383 63-185 (188)
94 1zj6_A ADP-ribosylation factor 99.6 4.9E-16 1.7E-20 137.6 10.3 122 217-382 56-177 (187)
95 3r7w_B Gtpase2, GTP-binding pr 99.6 3.4E-16 1.1E-20 151.5 7.6 136 200-382 32-173 (331)
96 2f9l_A RAB11B, member RAS onco 99.6 1.3E-14 4.4E-19 130.0 16.6 120 217-384 50-169 (199)
97 3th5_A RAS-related C3 botulinu 99.4 4.2E-17 1.4E-21 146.7 0.0 127 219-382 76-204 (204)
98 2lkc_A Translation initiation 99.6 4E-15 1.4E-19 129.9 12.5 122 220-387 54-175 (178)
99 3q3j_B RHO-related GTP-binding 99.6 4.8E-15 1.7E-19 134.8 12.9 131 217-384 71-204 (214)
100 3q72_A GTP-binding protein RAD 99.6 9.1E-15 3.1E-19 126.1 13.5 121 217-384 45-165 (166)
101 3c5c_A RAS-like protein 12; GD 99.6 8E-15 2.7E-19 130.2 11.0 137 185-383 47-186 (187)
102 1oix_A RAS-related protein RAB 99.6 4.9E-14 1.7E-18 125.7 15.9 117 217-381 74-190 (191)
103 2atx_A Small GTP binding prote 99.5 5.7E-14 1.9E-18 124.8 13.7 130 217-382 62-192 (194)
104 2qu8_A Putative nucleolar GTP- 99.5 5.3E-14 1.8E-18 128.9 13.9 125 219-385 74-207 (228)
105 3pqc_A Probable GTP-binding pr 99.5 4.7E-14 1.6E-18 124.6 13.0 113 221-382 68-193 (195)
106 3clv_A RAB5 protein, putative; 99.5 9.1E-14 3.1E-18 123.2 14.4 113 221-384 93-205 (208)
107 2j0v_A RAC-like GTP-binding pr 99.5 2.6E-14 9E-19 128.9 10.3 128 217-384 53-181 (212)
108 2iwr_A Centaurin gamma 1; ANK 99.5 4.4E-13 1.5E-17 117.1 17.5 124 217-387 50-173 (178)
109 2g3y_A GTP-binding protein GEM 99.5 4.5E-14 1.5E-18 128.8 11.3 121 217-384 83-204 (211)
110 1svi_A GTP-binding protein YSX 99.5 8E-14 2.7E-18 123.6 12.5 111 222-381 70-193 (195)
111 2dyk_A GTP-binding protein; GT 99.5 4.4E-14 1.5E-18 121.0 9.7 105 220-381 48-160 (161)
112 3llu_A RAS-related GTP-binding 99.5 2.4E-13 8.2E-18 121.4 13.0 127 218-381 66-195 (196)
113 2cjw_A GTP-binding protein GEM 99.5 2.7E-13 9.4E-18 121.0 11.4 121 217-384 52-173 (192)
114 4djt_A GTP-binding nuclear pro 99.4 4.2E-13 1.4E-17 121.5 12.0 118 219-384 59-176 (218)
115 3dpu_A RAB family protein; roc 99.4 3.2E-13 1.1E-17 139.6 11.6 115 217-383 94-208 (535)
116 1nrj_B SR-beta, signal recogni 99.4 8.7E-14 3E-18 126.0 5.5 74 221-303 55-135 (218)
117 3l82_B F-box only protein 4; T 99.4 6.7E-14 2.3E-18 126.4 4.2 112 227-384 108-224 (227)
118 2zej_A Dardarin, leucine-rich 99.4 4.3E-13 1.5E-17 118.5 9.3 124 219-383 54-178 (184)
119 4dhe_A Probable GTP-binding pr 99.4 8E-13 2.7E-17 119.9 11.1 123 218-383 76-211 (223)
120 3c5h_A Glucocorticoid receptor 99.4 4E-13 1.4E-17 125.8 6.3 120 217-382 91-254 (255)
121 2ged_A SR-beta, signal recogni 99.4 2.6E-12 8.9E-17 113.7 11.1 74 221-303 91-171 (193)
122 1u0l_A Probable GTPase ENGC; p 99.3 6E-12 2E-16 120.8 9.2 106 222-379 64-169 (301)
123 3k53_A Ferrous iron transport 99.3 5.8E-12 2E-16 118.8 8.6 112 217-382 46-165 (271)
124 3l2o_B F-box only protein 4; s 99.3 1.2E-12 4E-17 123.7 3.5 101 227-340 193-306 (312)
125 3gee_A MNME, tRNA modification 99.3 6E-11 2.1E-15 120.8 15.3 112 218-382 278-397 (476)
126 3r7w_A Gtpase1, GTP-binding pr 99.2 1.8E-11 6.3E-16 117.7 10.2 124 219-382 50-180 (307)
127 2e87_A Hypothetical protein PH 99.2 1.8E-10 6E-15 113.1 16.0 116 219-383 212-336 (357)
128 3j2k_7 ERF3, eukaryotic polype 99.2 2.2E-10 7.6E-15 115.5 15.9 137 200-375 80-217 (439)
129 1xzp_A Probable tRNA modificat 99.2 2.2E-10 7.6E-15 116.7 15.3 108 219-383 289-405 (482)
130 2wji_A Ferrous iron transport 99.2 3.4E-11 1.2E-15 104.3 7.0 108 219-381 48-163 (165)
131 2elf_A Protein translation elo 99.2 9.3E-11 3.2E-15 115.7 11.0 117 217-382 56-179 (370)
132 3p26_A Elongation factor 1 alp 99.2 7.1E-11 2.4E-15 120.6 10.0 131 201-372 97-227 (483)
133 3lxx_A GTPase IMAP family memb 99.1 2.8E-10 9.7E-15 104.8 12.7 74 219-303 76-160 (239)
134 2cxx_A Probable GTP-binding pr 99.1 3E-11 1E-15 106.1 3.7 126 222-384 45-185 (190)
135 3t5d_A Septin-7; GTP-binding p 99.1 8.6E-11 2.9E-15 110.9 7.1 114 217-380 61-201 (274)
136 1jny_A EF-1-alpha, elongation 99.1 1.4E-10 4.9E-15 116.8 8.0 126 217-375 80-205 (435)
137 2wjg_A FEOB, ferrous iron tran 99.1 1.8E-10 6.1E-15 101.2 7.3 112 218-384 51-170 (188)
138 3geh_A MNME, tRNA modification 99.1 1.3E-09 4.3E-14 110.6 14.4 68 219-303 270-345 (462)
139 2gj8_A MNME, tRNA modification 99.1 1.7E-10 5.8E-15 100.9 6.8 107 220-382 51-165 (172)
140 2xtp_A GTPase IMAP family memb 99.1 6.9E-10 2.4E-14 103.5 11.1 127 219-383 69-208 (260)
141 2qag_A Septin-2, protein NEDD5 99.0 2.6E-10 8.8E-15 112.2 7.8 114 219-383 93-233 (361)
142 1kk1_A EIF2gamma; initiation o 99.0 7.7E-10 2.6E-14 110.5 10.6 116 221-381 83-198 (410)
143 4dcu_A GTP-binding protein ENG 99.0 2.8E-10 9.6E-15 115.3 6.7 72 217-303 67-146 (456)
144 1s0u_A EIF-2-gamma, translatio 99.0 1.6E-09 5.3E-14 108.2 11.0 116 221-381 81-196 (408)
145 4dcu_A GTP-binding protein ENG 98.9 6.8E-10 2.3E-14 112.4 6.0 120 218-384 240-370 (456)
146 3iev_A GTP-binding protein ERA 98.9 3.2E-09 1.1E-13 102.1 10.2 112 220-381 58-180 (308)
147 3def_A T7I23.11 protein; chlor 98.9 1.9E-09 6.6E-14 100.9 8.2 76 217-302 80-165 (262)
148 3a1s_A Iron(II) transport prot 98.9 1.3E-09 4.3E-14 102.2 6.6 110 217-381 48-165 (258)
149 3b1v_A Ferrous iron uptake tra 98.9 1.5E-09 5.2E-14 102.6 7.0 107 220-381 48-162 (272)
150 3i8s_A Ferrous iron transport 98.8 3E-09 1E-13 100.5 6.8 110 217-381 46-167 (274)
151 3iby_A Ferrous iron transport 98.8 1.5E-09 5E-14 101.7 4.5 109 217-380 44-164 (256)
152 3tr5_A RF-3, peptide chain rel 98.8 1.5E-08 5.1E-13 104.4 12.3 72 217-303 78-149 (528)
153 2hjg_A GTP-binding protein ENG 98.8 2.5E-09 8.4E-14 107.7 5.0 120 218-384 220-350 (436)
154 2hjg_A GTP-binding protein ENG 98.8 6.6E-09 2.3E-13 104.6 7.6 72 217-303 47-126 (436)
155 1d2e_A Elongation factor TU (E 98.7 3E-08 1E-12 98.6 10.6 83 199-302 50-133 (397)
156 1wf3_A GTP-binding protein; GT 98.7 2E-08 6.7E-13 96.3 8.9 72 218-302 52-131 (301)
157 3qq5_A Small GTP-binding prote 98.7 4.9E-09 1.7E-13 105.1 4.5 105 222-382 84-195 (423)
158 3sjy_A Translation initiation 98.7 1.5E-08 5E-13 101.0 7.9 116 221-381 75-190 (403)
159 1wb1_A Translation elongation 98.7 1.8E-08 6E-13 102.8 8.3 119 218-382 70-188 (482)
160 2c78_A Elongation factor TU-A; 98.7 3.6E-08 1.2E-12 98.2 9.7 71 217-302 71-142 (405)
161 3cb4_D GTP-binding protein LEP 98.7 4.9E-08 1.7E-12 101.9 10.7 113 218-381 68-180 (599)
162 1mky_A Probable GTP-binding pr 98.7 2.3E-08 8E-13 100.6 8.0 108 219-383 47-166 (439)
163 1zun_B Sulfate adenylate trans 98.7 2.9E-08 9.8E-13 99.9 8.0 72 217-302 100-171 (434)
164 1h65_A Chloroplast outer envel 98.6 4.3E-08 1.5E-12 92.1 7.7 77 217-302 83-168 (270)
165 3izy_P Translation initiation 98.6 1.1E-08 3.6E-13 105.4 3.8 116 220-381 51-166 (537)
166 2ywe_A GTP-binding protein LEP 98.6 8.1E-08 2.8E-12 100.1 10.2 113 218-381 70-182 (600)
167 1zo1_I IF2, translation initia 98.6 2.7E-08 9.2E-13 101.6 5.6 113 219-379 49-163 (501)
168 2j69_A Bacterial dynamin-like 98.6 1E-06 3.5E-11 93.6 17.7 134 221-383 174-325 (695)
169 1lnz_A SPO0B-associated GTP-bi 98.6 6.5E-08 2.2E-12 94.3 7.3 116 221-382 206-329 (342)
170 1r5b_A Eukaryotic peptide chai 98.6 5.4E-08 1.8E-12 98.8 6.8 90 199-302 105-195 (467)
171 1g7s_A Translation initiation 98.5 2.8E-07 9.7E-12 96.1 11.0 141 221-382 70-217 (594)
172 1f60_A Elongation factor EEF1A 98.5 1.7E-07 5.9E-12 94.9 8.9 77 217-301 81-158 (458)
173 3izq_1 HBS1P, elongation facto 98.5 9.7E-08 3.3E-12 100.0 6.9 122 217-373 241-362 (611)
174 3avx_A Elongation factor TS, e 98.5 5.2E-07 1.8E-11 99.4 12.0 82 200-302 344-426 (1289)
175 2qtf_A Protein HFLX, GTP-bindi 98.5 1E-06 3.4E-11 86.6 12.2 123 220-385 225-356 (364)
176 1mky_A Probable GTP-binding pr 98.4 3.7E-07 1.2E-11 91.9 8.9 118 219-383 226-355 (439)
177 1dar_A EF-G, elongation factor 98.4 4.5E-07 1.6E-11 96.3 10.0 72 217-303 73-144 (691)
178 2rdo_7 EF-G, elongation factor 98.4 1.2E-06 4E-11 93.3 12.0 71 218-303 79-149 (704)
179 3mca_A HBS1, elongation factor 98.3 1.4E-07 4.8E-12 98.5 2.9 87 200-302 240-329 (592)
180 2yv5_A YJEQ protein; hydrolase 98.3 1.5E-06 5E-11 83.2 9.5 100 230-378 65-164 (302)
181 3lxw_A GTPase IMAP family memb 98.3 1.2E-06 4E-11 81.2 8.5 77 217-303 66-154 (247)
182 2hf9_A Probable hydrogenase ni 98.3 1.8E-06 6.2E-11 77.9 9.5 59 289-382 165-223 (226)
183 2dy1_A Elongation factor G; tr 98.3 2E-06 6.8E-11 91.0 10.2 70 217-301 70-139 (665)
184 2xex_A Elongation factor G; GT 98.3 2.1E-06 7.1E-11 91.3 9.5 72 217-303 71-142 (693)
185 3ec1_A YQEH GTPase; atnos1, at 98.2 1.9E-06 6.6E-11 84.7 8.4 105 229-381 56-160 (369)
186 1ega_A Protein (GTP-binding pr 98.2 2.3E-06 8E-11 81.7 7.2 69 218-302 53-130 (301)
187 2aka_B Dynamin-1; fusion prote 98.2 6E-07 2.1E-11 84.8 2.9 70 220-303 124-207 (299)
188 3h2y_A GTPase family protein; 98.1 2.5E-06 8.6E-11 83.9 6.2 103 230-380 55-157 (368)
189 2h5e_A Peptide chain release f 98.1 3.3E-06 1.1E-10 87.0 7.0 72 217-303 78-149 (529)
190 1pui_A ENGB, probable GTP-bind 98.0 3.4E-05 1.2E-09 68.5 9.9 112 222-381 73-197 (210)
191 1n0u_A EF-2, elongation factor 97.9 6.3E-06 2.2E-10 89.4 5.6 71 217-302 94-164 (842)
192 1yrb_A ATP(GTP)binding protein 97.9 1.3E-05 4.5E-10 74.0 6.4 72 221-303 109-186 (262)
193 2wsm_A Hydrogenase expression/ 97.8 7.7E-05 2.6E-09 66.8 9.2 105 221-383 109-214 (221)
194 3p32_A Probable GTPase RV1496/ 97.7 0.00016 5.5E-09 70.4 10.7 115 218-382 169-283 (355)
195 3vqt_A RF-3, peptide chain rel 97.6 0.00024 8.1E-09 73.4 11.1 84 199-303 84-167 (548)
196 2qnr_A Septin-2, protein NEDD5 97.6 2.8E-05 9.5E-10 74.2 3.3 112 219-383 74-214 (301)
197 1udx_A The GTP-binding protein 97.5 0.00045 1.5E-08 68.8 10.4 114 221-383 205-325 (416)
198 1jwy_B Dynamin A GTPase domain 97.4 9.4E-05 3.2E-09 70.2 4.8 72 219-303 129-213 (315)
199 2x2e_A Dynamin-1; nitration, h 97.4 3.1E-05 1.1E-09 75.4 1.1 71 220-303 129-212 (353)
200 3t34_A Dynamin-related protein 97.4 0.00012 4.2E-09 71.3 4.6 72 219-303 134-218 (360)
201 2p67_A LAO/AO transport system 97.3 0.00049 1.7E-08 66.6 8.1 114 218-381 146-259 (341)
202 2qag_C Septin-7; cell cycle, c 97.3 0.00045 1.5E-08 68.9 7.8 24 357-380 201-224 (418)
203 1wxq_A GTP-binding protein; st 97.1 0.00035 1.2E-08 69.2 4.4 38 220-257 70-114 (397)
204 2qpt_A EH domain-containing pr 97.1 0.00026 8.8E-09 73.1 3.5 68 221-302 154-232 (550)
205 3j25_A Tetracycline resistance 97.0 0.00028 9.6E-09 74.1 3.6 93 187-304 43-135 (638)
206 1puj_A YLQF, conserved hypothe 96.7 0.0017 5.8E-08 61.2 5.8 101 226-382 5-105 (282)
207 2www_A Methylmalonic aciduria 96.7 0.0031 1.1E-07 61.2 7.4 113 219-381 165-277 (349)
208 4gp7_A Metallophosphoesterase; 95.9 0.0032 1.1E-07 54.3 2.3 18 49-66 11-28 (171)
209 1zp6_A Hypothetical protein AT 95.9 0.0033 1.1E-07 54.6 2.4 23 49-71 11-33 (191)
210 2dby_A GTP-binding protein; GD 95.9 0.028 9.5E-07 54.9 9.3 36 221-256 69-111 (368)
211 1ye8_A Protein THEP1, hypothet 95.8 0.0035 1.2E-07 54.8 2.5 23 49-71 2-24 (178)
212 2zej_A Dardarin, leucine-rich 95.8 0.0037 1.3E-07 54.0 2.5 21 47-67 2-22 (184)
213 1kgd_A CASK, peripheral plasma 95.7 0.0046 1.6E-07 53.7 2.8 23 49-71 7-29 (180)
214 1lvg_A Guanylate kinase, GMP k 95.7 0.0049 1.7E-07 54.6 3.0 23 49-71 6-28 (198)
215 1jal_A YCHF protein; nucleotid 95.7 0.027 9.1E-07 54.9 8.3 36 221-256 66-108 (363)
216 3q72_A GTP-binding protein RAD 95.6 0.0045 1.5E-07 51.9 2.3 21 47-67 2-22 (166)
217 3tr0_A Guanylate kinase, GMP k 95.6 0.0046 1.6E-07 54.3 2.5 23 49-71 9-31 (205)
218 4fn5_A EF-G 1, elongation fact 95.5 0.014 4.8E-07 62.0 6.2 71 218-303 82-152 (709)
219 1kag_A SKI, shikimate kinase I 95.5 0.0055 1.9E-07 52.3 2.5 24 49-72 6-29 (173)
220 3c8u_A Fructokinase; YP_612366 95.5 0.0065 2.2E-07 54.0 3.0 26 46-71 21-46 (208)
221 3a00_A Guanylate kinase, GMP k 95.5 0.0069 2.4E-07 52.8 2.9 22 50-71 4-25 (186)
222 2wji_A Ferrous iron transport 95.4 0.0056 1.9E-07 51.9 2.3 22 47-68 3-24 (165)
223 3lw7_A Adenylate kinase relate 95.4 0.0066 2.2E-07 51.3 2.5 19 49-67 3-21 (179)
224 2wjg_A FEOB, ferrous iron tran 95.4 0.0061 2.1E-07 52.4 2.3 23 46-68 6-28 (188)
225 2bdt_A BH3686; alpha-beta prot 95.4 0.0066 2.3E-07 52.8 2.5 21 49-69 4-24 (189)
226 3kb2_A SPBC2 prophage-derived 95.3 0.0072 2.5E-07 51.2 2.5 22 49-70 3-24 (173)
227 2p5t_B PEZT; postsegregational 95.3 0.0065 2.2E-07 55.9 2.4 26 46-71 31-56 (253)
228 1ly1_A Polynucleotide kinase; 95.3 0.0076 2.6E-07 51.5 2.7 21 49-69 4-24 (181)
229 2ehv_A Hypothetical protein PH 95.3 0.007 2.4E-07 54.7 2.5 20 49-68 32-51 (251)
230 1znw_A Guanylate kinase, GMP k 95.3 0.0073 2.5E-07 53.6 2.5 23 49-71 22-44 (207)
231 2j41_A Guanylate kinase; GMP, 95.3 0.0074 2.5E-07 52.9 2.5 23 49-71 8-30 (207)
232 4eun_A Thermoresistant glucoki 95.2 0.0078 2.7E-07 53.0 2.5 22 49-70 31-52 (200)
233 3asz_A Uridine kinase; cytidin 95.2 0.0093 3.2E-07 52.7 3.0 25 48-72 7-31 (211)
234 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 52.7 3.3 23 49-71 10-32 (208)
235 3tlx_A Adenylate kinase 2; str 95.2 0.015 5.2E-07 53.1 4.3 27 45-71 27-53 (243)
236 1qhx_A CPT, protein (chloramph 95.1 0.0099 3.4E-07 50.9 2.9 24 49-72 5-28 (178)
237 2bbw_A Adenylate kinase 4, AK4 95.1 0.0082 2.8E-07 54.7 2.5 24 48-71 28-51 (246)
238 2iwr_A Centaurin gamma 1; ANK 95.1 0.0068 2.3E-07 51.6 1.8 23 46-68 6-28 (178)
239 3tif_A Uncharacterized ABC tra 95.1 0.0087 3E-07 54.7 2.5 23 49-71 33-55 (235)
240 1knq_A Gluconate kinase; ALFA/ 95.1 0.009 3.1E-07 51.1 2.5 22 49-70 10-31 (175)
241 1zd9_A ADP-ribosylation factor 95.1 0.0077 2.6E-07 52.1 2.0 24 44-67 19-42 (188)
242 1htw_A HI0065; nucleotide-bind 95.1 0.0093 3.2E-07 51.1 2.5 23 49-71 35-57 (158)
243 1s96_A Guanylate kinase, GMP k 95.1 0.009 3.1E-07 54.0 2.5 23 49-71 18-40 (219)
244 3sop_A Neuronal-specific septi 95.1 0.0083 2.9E-07 56.0 2.3 24 48-71 3-26 (270)
245 1z6g_A Guanylate kinase; struc 95.1 0.01 3.6E-07 53.3 2.9 23 49-71 25-47 (218)
246 1ksh_A ARF-like protein 2; sma 95.0 0.0091 3.1E-07 51.2 2.3 23 45-67 16-38 (186)
247 2cxx_A Probable GTP-binding pr 95.0 0.0097 3.3E-07 51.0 2.5 21 48-68 2-22 (190)
248 3t61_A Gluconokinase; PSI-biol 95.0 0.0097 3.3E-07 52.4 2.5 23 48-70 19-41 (202)
249 3clv_A RAB5 protein, putative; 95.0 0.0089 3E-07 51.5 2.2 23 46-68 6-28 (208)
250 1zj6_A ADP-ribosylation factor 95.0 0.0093 3.2E-07 51.4 2.3 24 45-68 14-37 (187)
251 3uie_A Adenylyl-sulfate kinase 95.0 0.0098 3.3E-07 52.4 2.5 22 48-69 26-47 (200)
252 4a74_A DNA repair and recombin 95.0 0.0097 3.3E-07 53.0 2.5 21 49-69 27-47 (231)
253 2gj8_A MNME, tRNA modification 95.0 0.0097 3.3E-07 50.9 2.3 23 46-68 3-25 (172)
254 3c5c_A RAS-like protein 12; GD 95.0 0.0095 3.3E-07 51.6 2.3 24 45-68 19-42 (187)
255 3llu_A RAS-related GTP-binding 94.9 0.0099 3.4E-07 51.8 2.3 22 45-66 18-39 (196)
256 2b6h_A ADP-ribosylation factor 94.9 0.0099 3.4E-07 51.8 2.3 23 45-67 27-49 (192)
257 2qor_A Guanylate kinase; phosp 94.9 0.01 3.6E-07 52.4 2.5 24 48-71 13-36 (204)
258 1cke_A CK, MSSA, protein (cyti 94.9 0.013 4.3E-07 52.4 3.0 24 48-71 6-29 (227)
259 2pcj_A ABC transporter, lipopr 94.9 0.01 3.5E-07 53.7 2.4 23 49-71 32-54 (224)
260 3fb4_A Adenylate kinase; psych 94.9 0.011 3.7E-07 52.5 2.5 23 49-71 2-24 (216)
261 1via_A Shikimate kinase; struc 94.9 0.012 3.9E-07 50.6 2.5 23 49-71 6-28 (175)
262 1lw7_A Transcriptional regulat 94.9 0.012 4E-07 57.2 2.8 26 48-73 171-196 (365)
263 1nks_A Adenylate kinase; therm 94.8 0.013 4.3E-07 50.6 2.6 23 49-71 3-25 (194)
264 3cm0_A Adenylate kinase; ATP-b 94.8 0.011 3.8E-07 51.0 2.2 22 48-69 5-26 (186)
265 3dl0_A Adenylate kinase; phosp 94.8 0.012 4.1E-07 52.3 2.5 23 49-71 2-24 (216)
266 3vaa_A Shikimate kinase, SK; s 94.8 0.012 4.1E-07 51.8 2.4 23 49-71 27-49 (199)
267 1sgw_A Putative ABC transporte 94.8 0.012 4.2E-07 52.9 2.5 23 49-71 37-59 (214)
268 3umf_A Adenylate kinase; rossm 94.7 0.0091 3.1E-07 54.0 1.6 22 50-71 32-53 (217)
269 2if2_A Dephospho-COA kinase; a 94.7 0.013 4.5E-07 51.4 2.6 21 49-69 3-23 (204)
270 3b85_A Phosphate starvation-in 94.7 0.012 4.3E-07 52.6 2.5 22 49-70 24-45 (208)
271 2onk_A Molybdate/tungstate ABC 94.7 0.013 4.3E-07 53.8 2.5 23 49-71 26-48 (240)
272 2cbz_A Multidrug resistance-as 94.7 0.013 4.4E-07 53.6 2.5 23 49-71 33-55 (237)
273 3gfo_A Cobalt import ATP-bindi 94.7 0.013 4.3E-07 55.0 2.5 23 49-71 36-58 (275)
274 3t1o_A Gliding protein MGLA; G 94.7 0.011 3.8E-07 50.8 2.0 23 45-67 12-34 (198)
275 1kht_A Adenylate kinase; phosp 94.6 0.015 5.1E-07 50.1 2.6 24 48-71 4-27 (192)
276 2ff7_A Alpha-hemolysin translo 94.6 0.014 4.6E-07 53.8 2.5 23 49-71 37-59 (247)
277 1ex7_A Guanylate kinase; subst 94.6 0.016 5.5E-07 51.0 2.8 19 50-68 4-22 (186)
278 1g6h_A High-affinity branched- 94.6 0.014 4.7E-07 54.0 2.5 23 49-71 35-57 (257)
279 1ji0_A ABC transporter; ATP bi 94.6 0.014 4.8E-07 53.4 2.5 23 49-71 34-56 (240)
280 2jaq_A Deoxyguanosine kinase; 94.6 0.015 5.2E-07 50.7 2.6 23 49-71 2-24 (205)
281 1b0u_A Histidine permease; ABC 94.6 0.014 4.7E-07 54.2 2.5 23 49-71 34-56 (262)
282 3trf_A Shikimate kinase, SK; a 94.6 0.015 5.1E-07 50.2 2.5 22 49-70 7-28 (185)
283 4dkx_A RAS-related protein RAB 94.6 0.014 4.7E-07 52.5 2.3 22 46-67 12-33 (216)
284 2rhm_A Putative kinase; P-loop 94.6 0.015 5E-07 50.4 2.5 24 48-71 6-29 (193)
285 3q3j_B RHO-related GTP-binding 94.6 0.014 4.8E-07 51.9 2.3 23 45-67 25-47 (214)
286 1mv5_A LMRA, multidrug resista 94.6 0.014 4.9E-07 53.4 2.5 23 49-71 30-52 (243)
287 3ec2_A DNA replication protein 94.5 0.015 5E-07 50.2 2.4 20 49-68 40-59 (180)
288 4g1u_C Hemin import ATP-bindin 94.5 0.014 4.9E-07 54.3 2.5 23 49-71 39-61 (266)
289 2pze_A Cystic fibrosis transme 94.5 0.015 5.1E-07 52.8 2.5 23 49-71 36-58 (229)
290 2d2e_A SUFC protein; ABC-ATPas 94.5 0.015 5.1E-07 53.5 2.5 22 49-70 31-52 (250)
291 1vpl_A ABC transporter, ATP-bi 94.5 0.015 5.1E-07 53.8 2.5 23 49-71 43-65 (256)
292 2bwj_A Adenylate kinase 5; pho 94.5 0.02 6.8E-07 49.8 3.1 25 47-71 12-36 (199)
293 3lnc_A Guanylate kinase, GMP k 94.5 0.012 4.1E-07 53.0 1.8 23 49-71 29-52 (231)
294 2qi9_C Vitamin B12 import ATP- 94.5 0.015 5.3E-07 53.5 2.5 23 49-71 28-50 (249)
295 1tev_A UMP-CMP kinase; ploop, 94.5 0.016 5.5E-07 50.0 2.5 24 48-71 4-27 (196)
296 2iyv_A Shikimate kinase, SK; t 94.5 0.017 5.7E-07 49.9 2.6 23 49-71 4-26 (184)
297 1jjv_A Dephospho-COA kinase; P 94.5 0.016 5.5E-07 51.0 2.5 21 49-69 4-24 (206)
298 2qnr_A Septin-2, protein NEDD5 94.4 0.014 4.9E-07 55.2 2.3 22 46-67 17-38 (301)
299 2olj_A Amino acid ABC transpor 94.4 0.016 5.4E-07 53.9 2.5 23 49-71 52-74 (263)
300 2eyu_A Twitching motility prot 94.4 0.016 5.5E-07 53.8 2.5 23 49-71 27-49 (261)
301 2ixe_A Antigen peptide transpo 94.4 0.016 5.6E-07 54.0 2.5 23 49-71 47-69 (271)
302 2pt5_A Shikimate kinase, SK; a 94.4 0.018 6.3E-07 48.7 2.6 23 49-71 2-24 (168)
303 2nq2_C Hypothetical ABC transp 94.4 0.017 5.8E-07 53.3 2.5 23 49-71 33-55 (253)
304 2ghi_A Transport protein; mult 94.4 0.017 5.7E-07 53.6 2.5 23 49-71 48-70 (260)
305 2cjw_A GTP-binding protein GEM 94.4 0.017 5.9E-07 50.3 2.5 22 46-67 5-26 (192)
306 1aky_A Adenylate kinase; ATP:A 94.4 0.016 5.6E-07 51.6 2.3 25 47-71 4-28 (220)
307 2v9p_A Replication protein E1; 94.3 0.022 7.5E-07 54.2 3.3 23 49-71 128-150 (305)
308 1e4v_A Adenylate kinase; trans 94.3 0.019 6.5E-07 51.0 2.6 23 49-71 2-24 (214)
309 2yz2_A Putative ABC transporte 94.3 0.018 6E-07 53.6 2.5 23 49-71 35-57 (266)
310 1pui_A ENGB, probable GTP-bind 94.3 0.012 4.2E-07 51.6 1.3 22 46-67 25-46 (210)
311 3aez_A Pantothenate kinase; tr 94.3 0.019 6.6E-07 54.7 2.8 24 49-72 92-115 (312)
312 2i3b_A HCR-ntpase, human cance 94.3 0.019 6.6E-07 50.6 2.6 22 49-70 3-24 (189)
313 2plr_A DTMP kinase, probable t 94.3 0.02 6.7E-07 50.2 2.7 24 48-71 5-28 (213)
314 3iij_A Coilin-interacting nucl 94.3 0.019 6.5E-07 49.4 2.5 24 48-71 12-35 (180)
315 2zu0_C Probable ATP-dependent 94.3 0.018 6.2E-07 53.6 2.5 22 49-70 48-69 (267)
316 3ney_A 55 kDa erythrocyte memb 94.2 0.022 7.5E-07 50.7 2.8 23 49-71 21-43 (197)
317 2ihy_A ABC transporter, ATP-bi 94.2 0.019 6.4E-07 53.9 2.5 23 49-71 49-71 (279)
318 2jeo_A Uridine-cytidine kinase 94.2 0.019 6.5E-07 52.3 2.5 24 48-71 26-49 (245)
319 4bas_A ADP-ribosylation factor 94.2 0.02 6.8E-07 49.5 2.5 23 45-67 15-37 (199)
320 2pjz_A Hypothetical protein ST 94.2 0.019 6.6E-07 53.3 2.5 22 49-70 32-53 (263)
321 1e6c_A Shikimate kinase; phosp 94.2 0.022 7.6E-07 48.3 2.6 23 49-71 4-26 (173)
322 2c95_A Adenylate kinase 1; tra 94.2 0.023 7.7E-07 49.3 2.7 26 46-71 8-33 (196)
323 2fu5_C RAS-related protein RAB 94.1 0.014 4.6E-07 49.9 1.3 22 46-67 7-28 (183)
324 3sr0_A Adenylate kinase; phosp 94.1 0.025 8.5E-07 50.6 3.0 23 49-71 2-24 (206)
325 2atx_A Small GTP binding prote 94.1 0.017 5.9E-07 49.9 1.9 23 46-68 17-39 (194)
326 3n70_A Transport activator; si 94.1 0.043 1.5E-06 45.7 4.4 38 32-69 9-46 (145)
327 1y63_A LMAJ004144AAA protein; 94.1 0.022 7.5E-07 49.4 2.6 23 48-70 11-33 (184)
328 3kta_A Chromosome segregation 94.1 0.028 9.6E-07 48.3 3.2 23 49-71 28-50 (182)
329 1gvn_B Zeta; postsegregational 94.1 0.029 1E-06 52.6 3.5 24 48-71 34-57 (287)
330 2vli_A Antibiotic resistance p 94.1 0.018 6.2E-07 49.4 1.9 22 49-70 7-28 (183)
331 1qf9_A UMP/CMP kinase, protein 94.1 0.023 8E-07 48.9 2.6 23 49-71 8-30 (194)
332 2pbr_A DTMP kinase, thymidylat 94.0 0.024 8.1E-07 48.9 2.7 21 49-69 2-22 (195)
333 2j0v_A RAC-like GTP-binding pr 94.0 0.02 7E-07 50.2 2.2 22 46-67 8-29 (212)
334 2ze6_A Isopentenyl transferase 94.0 0.022 7.5E-07 52.4 2.5 19 50-68 4-22 (253)
335 1c9k_A COBU, adenosylcobinamid 94.0 0.023 7.9E-07 49.8 2.5 19 50-68 2-20 (180)
336 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.023 7.8E-07 50.4 2.5 20 49-68 25-44 (235)
337 2z0h_A DTMP kinase, thymidylat 94.0 0.025 8.5E-07 49.1 2.7 21 49-69 2-22 (197)
338 1zuh_A Shikimate kinase; alpha 94.0 0.026 8.8E-07 47.9 2.6 23 49-71 9-31 (168)
339 4djt_A GTP-binding nuclear pro 93.9 0.012 4E-07 52.1 0.4 23 45-67 9-31 (218)
340 4e22_A Cytidylate kinase; P-lo 93.9 0.024 8.1E-07 52.1 2.5 21 48-68 28-48 (252)
341 2cdn_A Adenylate kinase; phosp 93.9 0.026 8.9E-07 49.5 2.7 25 47-71 20-44 (201)
342 2qt1_A Nicotinamide riboside k 93.9 0.026 8.8E-07 49.7 2.6 24 48-71 22-45 (207)
343 1zd8_A GTP:AMP phosphotransfer 93.9 0.024 8.2E-07 50.9 2.4 24 48-71 8-31 (227)
344 1zak_A Adenylate kinase; ATP:A 93.9 0.025 8.5E-07 50.5 2.5 32 48-79 6-38 (222)
345 1odf_A YGR205W, hypothetical 3 93.9 0.035 1.2E-06 52.3 3.6 26 46-71 30-55 (290)
346 2g3y_A GTP-binding protein GEM 93.8 0.026 8.8E-07 50.5 2.5 23 45-67 35-57 (211)
347 2wwf_A Thymidilate kinase, put 93.8 0.027 9.4E-07 49.5 2.6 22 48-69 11-32 (212)
348 2bbs_A Cystic fibrosis transme 93.8 0.025 8.6E-07 53.3 2.5 23 49-71 66-88 (290)
349 3cnl_A YLQF, putative uncharac 93.8 0.027 9.4E-07 52.2 2.7 52 232-302 9-60 (262)
350 1rz3_A Hypothetical protein rb 93.8 0.026 9.1E-07 49.7 2.5 23 48-70 23-45 (201)
351 2pez_A Bifunctional 3'-phospho 93.7 0.028 9.4E-07 48.3 2.5 22 49-70 7-28 (179)
352 2yvu_A Probable adenylyl-sulfa 93.7 0.027 9.4E-07 48.7 2.5 22 48-69 14-35 (186)
353 3fvq_A Fe(3+) IONS import ATP- 93.7 0.026 8.8E-07 54.9 2.5 22 49-70 32-53 (359)
354 3nh6_A ATP-binding cassette SU 93.7 0.018 6E-07 54.9 1.3 24 49-72 82-105 (306)
355 3zvr_A Dynamin-1; hydrolase, D 93.7 0.023 7.8E-07 60.6 2.2 70 220-303 149-232 (772)
356 2f1r_A Molybdopterin-guanine d 93.7 0.021 7.2E-07 49.5 1.6 23 49-71 4-26 (171)
357 2v54_A DTMP kinase, thymidylat 93.7 0.03 1E-06 48.9 2.7 24 48-71 5-28 (204)
358 1ukz_A Uridylate kinase; trans 93.7 0.028 9.7E-07 49.2 2.5 24 48-71 16-39 (203)
359 2wsm_A Hydrogenase expression/ 93.7 0.067 2.3E-06 47.2 5.0 24 45-68 28-51 (221)
360 1nn5_A Similar to deoxythymidy 93.6 0.028 9.5E-07 49.5 2.3 23 47-69 9-31 (215)
361 1gtv_A TMK, thymidylate kinase 93.6 0.018 6.3E-07 50.7 1.1 22 49-70 2-23 (214)
362 2cvh_A DNA repair and recombin 93.6 0.03 1E-06 49.4 2.5 21 49-69 22-42 (220)
363 1z47_A CYSA, putative ABC-tran 93.5 0.029 9.9E-07 54.5 2.5 22 49-70 43-64 (355)
364 3a1s_A Iron(II) transport prot 93.5 0.025 8.7E-07 52.2 2.0 23 46-68 4-26 (258)
365 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.03 1E-06 51.5 2.5 21 49-69 6-26 (260)
366 2xb4_A Adenylate kinase; ATP-b 93.5 0.031 1.1E-06 50.1 2.5 23 49-71 2-24 (223)
367 1sq5_A Pantothenate kinase; P- 93.5 0.036 1.2E-06 52.5 3.0 25 48-72 81-105 (308)
368 3tqc_A Pantothenate kinase; bi 93.5 0.037 1.3E-06 53.0 3.0 23 49-71 94-116 (321)
369 3tui_C Methionine import ATP-b 93.5 0.032 1.1E-06 54.4 2.6 23 49-71 56-78 (366)
370 2yyz_A Sugar ABC transporter, 93.5 0.03 1E-06 54.4 2.5 23 49-71 31-53 (359)
371 3b1v_A Ferrous iron uptake tra 93.4 0.03 1E-06 52.2 2.3 22 47-68 3-24 (272)
372 3lxw_A GTPase IMAP family memb 93.4 0.03 1E-06 51.2 2.2 23 45-67 19-41 (247)
373 1uf9_A TT1252 protein; P-loop, 93.4 0.032 1.1E-06 48.6 2.3 24 47-70 8-31 (203)
374 2it1_A 362AA long hypothetical 93.4 0.032 1.1E-06 54.3 2.5 22 49-70 31-52 (362)
375 3be4_A Adenylate kinase; malar 93.3 0.036 1.2E-06 49.4 2.6 24 48-71 6-29 (217)
376 1g29_1 MALK, maltose transport 93.3 0.033 1.1E-06 54.5 2.5 22 49-70 31-52 (372)
377 1v43_A Sugar-binding transport 93.3 0.033 1.1E-06 54.4 2.5 23 49-71 39-61 (372)
378 2qag_C Septin-7; cell cycle, c 93.3 0.033 1.1E-06 55.3 2.5 21 47-67 31-51 (418)
379 1rj9_A FTSY, signal recognitio 93.2 0.04 1.4E-06 52.3 2.8 23 49-71 104-126 (304)
380 1m7g_A Adenylylsulfate kinase; 93.1 0.052 1.8E-06 48.0 3.3 23 48-70 26-48 (211)
381 1cr0_A DNA primase/helicase; R 93.1 0.037 1.3E-06 51.7 2.5 23 49-71 37-59 (296)
382 3rlf_A Maltose/maltodextrin im 93.1 0.038 1.3E-06 54.1 2.6 23 49-71 31-53 (381)
383 3d31_A Sulfate/molybdate ABC t 93.1 0.029 9.8E-07 54.4 1.7 23 49-71 28-50 (348)
384 2qtf_A Protein HFLX, GTP-bindi 93.1 0.078 2.7E-06 51.6 4.8 22 47-68 178-200 (364)
385 3jvv_A Twitching mobility prot 93.1 0.037 1.3E-06 53.7 2.5 20 49-68 125-144 (356)
386 1t9h_A YLOQ, probable GTPase E 93.1 0.072 2.5E-06 50.6 4.4 53 237-302 79-131 (307)
387 1n0w_A DNA repair protein RAD5 93.1 0.04 1.4E-06 49.4 2.5 21 49-69 26-46 (243)
388 1vht_A Dephospho-COA kinase; s 93.1 0.043 1.5E-06 48.7 2.6 22 48-69 5-26 (218)
389 2qag_B Septin-6, protein NEDD5 93.1 0.038 1.3E-06 55.0 2.4 21 48-68 43-63 (427)
390 2kjq_A DNAA-related protein; s 93.0 0.04 1.4E-06 46.4 2.3 21 49-69 38-58 (149)
391 2x8a_A Nuclear valosin-contain 93.0 0.04 1.4E-06 51.3 2.5 22 50-71 47-68 (274)
392 3co5_A Putative two-component 93.0 0.069 2.4E-06 44.3 3.6 24 45-68 25-48 (143)
393 1ltq_A Polynucleotide kinase; 93.0 0.041 1.4E-06 51.4 2.5 21 49-69 4-24 (301)
394 2gza_A Type IV secretion syste 92.9 0.044 1.5E-06 53.2 2.7 25 48-72 176-200 (361)
395 1ixz_A ATP-dependent metallopr 92.9 0.044 1.5E-06 49.9 2.5 24 50-73 52-75 (254)
396 2rcn_A Probable GTPase ENGC; Y 92.9 0.32 1.1E-05 47.1 8.8 48 241-302 127-174 (358)
397 1nlf_A Regulatory protein REPA 92.9 0.043 1.5E-06 50.9 2.5 22 49-70 32-53 (279)
398 1oxx_K GLCV, glucose, ABC tran 92.8 0.029 9.8E-07 54.5 1.2 22 49-70 33-54 (353)
399 3gd7_A Fusion complex of cysti 92.8 0.044 1.5E-06 53.9 2.5 22 49-70 49-70 (390)
400 3nwj_A ATSK2; P loop, shikimat 92.8 0.047 1.6E-06 50.3 2.5 24 48-71 49-72 (250)
401 2grj_A Dephospho-COA kinase; T 92.7 0.052 1.8E-06 47.9 2.7 26 46-71 11-36 (192)
402 2vp4_A Deoxynucleoside kinase; 92.7 0.036 1.2E-06 50.0 1.6 22 49-70 22-43 (230)
403 1ak2_A Adenylate kinase isoenz 92.7 0.048 1.7E-06 49.1 2.5 24 48-71 17-40 (233)
404 2npi_A Protein CLP1; CLP1-PCF1 92.6 0.047 1.6E-06 54.9 2.5 24 48-71 139-162 (460)
405 1uj2_A Uridine-cytidine kinase 92.6 0.05 1.7E-06 49.7 2.5 25 46-70 21-45 (252)
406 2pt7_A CAG-ALFA; ATPase, prote 92.6 0.047 1.6E-06 52.4 2.4 24 48-71 172-195 (330)
407 2ewv_A Twitching motility prot 92.6 0.049 1.7E-06 53.1 2.5 23 49-71 138-160 (372)
408 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.066 2.3E-06 45.0 2.9 20 50-69 26-45 (149)
409 3b9q_A Chloroplast SRP recepto 92.5 0.06 2.1E-06 51.0 2.9 23 49-71 102-124 (302)
410 3i8s_A Ferrous iron transport 92.5 0.05 1.7E-06 50.6 2.3 21 47-67 3-23 (274)
411 2qm8_A GTPase/ATPase; G protei 92.4 0.43 1.5E-05 45.7 8.9 35 218-255 145-179 (337)
412 1jbk_A CLPB protein; beta barr 92.4 0.058 2E-06 45.7 2.5 20 48-67 44-63 (195)
413 1in4_A RUVB, holliday junction 92.4 0.1 3.4E-06 49.9 4.4 23 48-70 52-74 (334)
414 3iby_A Ferrous iron transport 92.4 0.054 1.8E-06 49.9 2.4 20 48-67 2-21 (256)
415 3r20_A Cytidylate kinase; stru 92.3 0.055 1.9E-06 49.3 2.4 25 47-71 9-33 (233)
416 3r7w_A Gtpase1, GTP-binding pr 92.3 0.056 1.9E-06 51.1 2.5 21 47-67 3-23 (307)
417 2ohf_A Protein OLA1, GTP-bindi 92.2 0.11 3.8E-06 51.1 4.6 37 222-258 87-130 (396)
418 1iy2_A ATP-dependent metallopr 92.2 0.059 2E-06 49.9 2.5 25 50-74 76-100 (278)
419 2www_A Methylmalonic aciduria 92.2 0.1 3.4E-06 50.4 4.2 22 47-68 74-95 (349)
420 1p9r_A General secretion pathw 92.2 0.058 2E-06 53.5 2.5 22 49-70 169-190 (418)
421 2f6r_A COA synthase, bifunctio 92.1 0.063 2.2E-06 50.1 2.5 22 48-69 76-97 (281)
422 1np6_A Molybdopterin-guanine d 92.1 0.066 2.3E-06 46.5 2.5 19 49-67 8-26 (174)
423 3ake_A Cytidylate kinase; CMP 92.0 0.081 2.8E-06 46.1 3.0 24 49-72 4-27 (208)
424 2obl_A ESCN; ATPase, hydrolase 92.0 0.062 2.1E-06 52.0 2.4 25 48-72 72-96 (347)
425 1u0l_A Probable GTPase ENGC; p 91.9 0.068 2.3E-06 50.4 2.5 23 49-71 171-193 (301)
426 2yv5_A YJEQ protein; hydrolase 91.9 0.068 2.3E-06 50.5 2.5 22 49-71 167-188 (302)
427 1nij_A Hypothetical protein YJ 91.8 0.069 2.4E-06 50.8 2.5 22 49-70 6-27 (318)
428 3e70_C DPA, signal recognition 91.8 0.081 2.8E-06 50.7 2.9 24 48-71 130-153 (328)
429 4eaq_A DTMP kinase, thymidylat 91.8 0.078 2.7E-06 47.9 2.6 24 48-71 27-50 (229)
430 2yhs_A FTSY, cell division pro 91.7 0.08 2.7E-06 53.6 2.9 23 49-71 295-317 (503)
431 1tq4_A IIGP1, interferon-induc 91.7 0.15 5E-06 50.6 4.8 25 47-71 69-93 (413)
432 1tf7_A KAIC; homohexamer, hexa 91.7 0.068 2.3E-06 54.5 2.5 19 49-67 41-59 (525)
433 3c5h_A Glucocorticoid receptor 91.7 0.069 2.4E-06 48.9 2.3 24 45-68 17-49 (255)
434 3bos_A Putative DNA replicatio 91.7 0.076 2.6E-06 47.1 2.5 22 47-68 52-73 (242)
435 1lv7_A FTSH; alpha/beta domain 91.6 0.077 2.6E-06 48.3 2.5 21 49-69 47-67 (257)
436 2dr3_A UPF0273 protein PH0284; 91.5 0.082 2.8E-06 47.3 2.5 20 49-68 25-44 (247)
437 2og2_A Putative signal recogni 91.4 0.094 3.2E-06 50.9 2.9 23 49-71 159-181 (359)
438 2p65_A Hypothetical protein PF 91.3 0.076 2.6E-06 44.9 2.0 22 48-69 44-65 (187)
439 3b5x_A Lipid A export ATP-bind 91.3 0.079 2.7E-06 54.7 2.5 24 49-72 371-394 (582)
440 2qm8_A GTPase/ATPase; G protei 91.2 0.086 2.9E-06 50.6 2.5 22 47-68 55-76 (337)
441 3euj_A Chromosome partition pr 91.2 0.11 3.6E-06 52.6 3.2 23 49-71 31-53 (483)
442 1pzn_A RAD51, DNA repair and r 91.2 0.086 2.9E-06 50.9 2.5 23 49-71 133-155 (349)
443 2dpy_A FLII, flagellum-specifi 91.2 0.11 3.7E-06 51.9 3.2 25 48-72 158-182 (438)
444 3zvl_A Bifunctional polynucleo 91.2 0.086 2.9E-06 52.1 2.5 20 49-68 260-279 (416)
445 1yqt_A RNAse L inhibitor; ATP- 91.1 0.085 2.9E-06 54.1 2.5 23 49-71 49-71 (538)
446 2qpt_A EH domain-containing pr 91.1 0.12 4.2E-06 53.0 3.6 22 47-68 65-86 (550)
447 3b60_A Lipid A export ATP-bind 91.1 0.079 2.7E-06 54.7 2.2 24 49-72 371-394 (582)
448 1q3t_A Cytidylate kinase; nucl 91.1 0.095 3.3E-06 47.2 2.5 24 47-70 16-39 (236)
449 1xjc_A MOBB protein homolog; s 91.0 0.1 3.5E-06 45.1 2.5 19 49-67 6-24 (169)
450 2rcn_A Probable GTPase ENGC; Y 91.0 0.095 3.2E-06 50.9 2.5 23 49-71 217-239 (358)
451 1ega_A Protein (GTP-binding pr 90.9 0.097 3.3E-06 49.3 2.5 22 47-68 8-29 (301)
452 2w58_A DNAI, primosome compone 90.8 0.11 3.6E-06 45.4 2.5 21 48-68 55-75 (202)
453 1qhl_A Protein (cell division 90.7 0.044 1.5E-06 49.8 -0.1 23 50-72 30-52 (227)
454 3ozx_A RNAse L inhibitor; ATP 90.7 0.099 3.4E-06 53.6 2.5 23 49-71 27-49 (538)
455 2aka_B Dynamin-1; fusion prote 90.7 0.11 3.6E-06 48.3 2.5 22 46-67 25-46 (299)
456 2yl4_A ATP-binding cassette SU 90.6 0.085 2.9E-06 54.6 1.9 24 49-72 372-395 (595)
457 3syl_A Protein CBBX; photosynt 90.6 0.42 1.4E-05 44.4 6.6 19 49-67 69-87 (309)
458 1bif_A 6-phosphofructo-2-kinas 90.6 0.098 3.4E-06 52.5 2.3 23 46-68 38-60 (469)
459 1svm_A Large T antigen; AAA+ f 90.6 0.11 3.7E-06 50.9 2.5 22 49-70 171-192 (377)
460 3qf4_B Uncharacterized ABC tra 90.5 0.091 3.1E-06 54.5 2.0 24 49-72 383-406 (598)
461 3qks_A DNA double-strand break 90.4 0.13 4.6E-06 45.4 2.8 22 50-71 26-47 (203)
462 1t9h_A YLOQ, probable GTPase E 90.3 0.063 2.2E-06 51.0 0.6 20 49-68 175-194 (307)
463 2oap_1 GSPE-2, type II secreti 90.3 0.22 7.5E-06 50.7 4.6 23 49-71 262-284 (511)
464 1a7j_A Phosphoribulokinase; tr 90.2 0.097 3.3E-06 49.1 1.8 24 48-71 6-29 (290)
465 3p32_A Probable GTPase RV1496/ 90.2 0.16 5.3E-06 49.0 3.3 24 46-69 78-101 (355)
466 2chg_A Replication factor C sm 90.1 0.13 4.5E-06 44.5 2.5 20 49-68 40-59 (226)
467 3bk7_A ABC transporter ATP-bin 90.1 0.12 4.1E-06 53.8 2.5 23 49-71 119-141 (607)
468 1wf3_A GTP-binding protein; GT 90.0 0.12 4.1E-06 48.8 2.2 23 46-68 6-28 (301)
469 2dby_A GTP-binding protein; GD 89.9 0.14 4.8E-06 49.9 2.6 22 48-69 2-23 (368)
470 1ewq_A DNA mismatch repair pro 89.9 0.14 4.9E-06 54.6 3.0 22 49-70 578-599 (765)
471 3b9p_A CG5977-PA, isoform A; A 89.8 0.14 4.8E-06 47.5 2.5 22 48-69 55-76 (297)
472 2px0_A Flagellar biosynthesis 89.8 0.16 5.6E-06 47.8 2.9 23 49-71 107-129 (296)
473 3j16_B RLI1P; ribosome recycli 89.7 0.14 4.9E-06 53.2 2.7 23 49-71 105-127 (608)
474 3lda_A DNA repair protein RAD5 89.7 0.14 4.7E-06 50.5 2.5 20 49-68 180-199 (400)
475 3h4m_A Proteasome-activating n 89.6 0.15 5.1E-06 46.9 2.5 21 48-68 52-72 (285)
476 1wb9_A DNA mismatch repair pro 89.6 0.15 5.3E-06 54.7 2.9 22 49-70 609-630 (800)
477 4a82_A Cystic fibrosis transme 89.6 0.086 2.9E-06 54.4 0.9 24 49-72 369-392 (578)
478 1ni3_A YCHF GTPase, YCHF GTP-b 89.5 0.15 5.1E-06 50.1 2.5 24 46-69 19-42 (392)
479 3cf0_A Transitional endoplasmi 89.4 0.16 5.3E-06 47.7 2.5 24 49-72 51-74 (301)
480 2bjv_A PSP operon transcriptio 89.4 0.3 1E-05 44.5 4.4 25 46-70 28-52 (265)
481 1njg_A DNA polymerase III subu 89.3 0.31 1.1E-05 42.6 4.3 19 49-67 47-65 (250)
482 2qz4_A Paraplegin; AAA+, SPG7, 89.3 0.16 5.6E-06 45.9 2.5 20 49-68 41-60 (262)
483 3cr8_A Sulfate adenylyltranfer 89.3 0.12 4.1E-06 53.1 1.7 23 48-70 370-392 (552)
484 3bk7_A ABC transporter ATP-bin 89.3 0.15 5.2E-06 53.0 2.5 23 49-71 384-406 (607)
485 3qf7_A RAD50; ABC-ATPase, ATPa 89.2 0.16 5.5E-06 49.3 2.5 20 50-69 26-45 (365)
486 3pfi_A Holliday junction ATP-d 89.2 0.26 9E-06 46.5 4.0 23 48-70 56-78 (338)
487 3ozx_A RNAse L inhibitor; ATP 89.2 0.16 5.3E-06 52.1 2.5 23 49-71 296-318 (538)
488 1vma_A Cell division protein F 89.1 0.19 6.7E-06 47.5 2.9 23 49-71 106-128 (306)
489 3szr_A Interferon-induced GTP- 89.1 0.13 4.6E-06 53.4 1.9 24 48-71 46-69 (608)
490 3thx_A DNA mismatch repair pro 89.0 0.16 5.3E-06 55.5 2.5 20 49-68 664-683 (934)
491 3r7w_B Gtpase2, GTP-binding pr 89.0 0.17 5.9E-06 48.5 2.5 18 49-66 1-18 (331)
492 3t34_A Dynamin-related protein 89.0 0.17 5.7E-06 48.8 2.5 22 47-68 34-55 (360)
493 4aby_A DNA repair protein RECN 88.9 0.1 3.4E-06 51.1 0.8 24 49-72 62-85 (415)
494 2o8b_B DNA mismatch repair pro 88.9 0.18 6.3E-06 55.5 2.9 22 49-70 791-812 (1022)
495 1yqt_A RNAse L inhibitor; ATP- 88.9 0.17 5.7E-06 51.8 2.5 23 49-71 314-336 (538)
496 2h92_A Cytidylate kinase; ross 88.8 0.24 8.1E-06 43.7 3.2 24 48-71 4-27 (219)
497 1l8q_A Chromosomal replication 88.7 0.19 6.4E-06 47.4 2.5 22 48-69 38-59 (324)
498 3d3q_A TRNA delta(2)-isopenten 88.7 0.18 6.3E-06 48.5 2.5 22 49-70 9-30 (340)
499 3qf4_A ABC transporter, ATP-bi 88.7 0.12 4.1E-06 53.4 1.3 24 49-72 371-394 (587)
500 1jwy_B Dynamin A GTPase domain 88.6 0.19 6.5E-06 47.0 2.5 22 46-67 23-44 (315)
No 1
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=1.6e-81 Score=626.54 Aligned_cols=367 Identities=31% Similarity=0.538 Sum_probs=289.1
Q ss_pred ccCccCCCCCC-ChhhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHH---------
Q 016253 9 MGLLCSKNRRY-NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA--------- 78 (392)
Q Consensus 9 m~~~~~~~~~~-~~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~--------- 78 (392)
||||||..... ..++++++++|++||++|++|+++.++++|+||||+||||||||+||||++|.+||+.+
T Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~ 80 (402)
T 1azs_C 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA 80 (402)
T ss_dssp -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------
T ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHH
Confidence 89877753221 23567899999999999999999999999999999999999999999999999999986
Q ss_pred ------HHHHhHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHhccCCCCCcCCcHHHHHHHHHhc
Q 016253 79 ------ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW 152 (392)
Q Consensus 79 ------e~~~~~~~i~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~LW 152 (392)
|+..|++.|+.|++++|+.|+++|..|..+. ...+++++..+..+..+....+ ..++++++++|..||
T Consensus 81 ~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lW 154 (402)
T 1azs_C 81 RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV-----ELANPENQFRVDYILSVMNVPD-FDFPPEFYEHAKALW 154 (402)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC-----CCSSGGGHHHHHHHHHTTTCSS-CCCCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccCCchhHHHHHHHHhhcccCC-CCCCHHHHHHHHHHH
Confidence 5667899999999999999999999986321 1235667777777766543222 468999999999999
Q ss_pred CChHHHHHHHccCCCCCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCcc
Q 016253 153 ADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR 232 (392)
Q Consensus 153 ~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~ 232 (392)
+||+||+||.|+++|+|+|++.|||++++||+.++|.||++|++++|.+|+|+.+..| ..++++++|||||||+
T Consensus 155 ~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~------~~~~v~l~iwDtaGQe 228 (402)
T 1azs_C 155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQR 228 (402)
T ss_dssp HCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEE------EETTEEEEEEEECCSG
T ss_pred cCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEe------ecCCccceecccchhh
Confidence 9999999999999999999999999999999999999999999999999999999888 6677999999999999
Q ss_pred ccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcccccc--ccCc
Q 016253 233 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL--KVPL 310 (392)
Q Consensus 233 ~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~--~~~l 310 (392)
++|++|.+||++++++|||||+|+|||++.|+.+.++|.++..||+++++++++.++|++|||||+||+++|+. .+++
T Consensus 229 ~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l 308 (402)
T 1azs_C 229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKI 308 (402)
T ss_dssp GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCG
T ss_pred hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988874 3455
Q ss_pred cccccccccccC--------CCCc-ccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 311 NVCEWFKDYQPV--------STGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 311 ~~~~~f~~y~~~--------~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
. .|||+|.+- ..|+ .+.++|.+|+.++|.+.++.... ..+.+|+|+|||+||+||+.+|.+|++.|
T Consensus 309 ~--~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~---~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 309 E--DYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGD---GRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp G--GTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCT---TSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred h--hccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccc---cCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 4 459999521 1132 25789999999999887643211 23568999999999999999999999999
Q ss_pred HHhhhhhcCCC
Q 016253 382 RRRHLFEAGLL 392 (392)
Q Consensus 382 l~~~l~~~~l~ 392 (392)
++.+|+.+||+
T Consensus 384 ~~~~l~~~~~~ 394 (402)
T 1azs_C 384 QRMHLRQYELL 394 (402)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhcCc
Confidence 99999999885
No 2
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=1.4e-81 Score=612.05 Aligned_cols=324 Identities=35% Similarity=0.640 Sum_probs=294.5
Q ss_pred HHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcchH
Q 016253 43 AEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENK 122 (392)
Q Consensus 43 ~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~ 122 (392)
+.++++|+||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.|+++. .+|+++
T Consensus 3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~-------~~~~~~ 75 (327)
T 3ohm_A 3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY-------KYEHNK 75 (327)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC-------SSTHHH
T ss_pred hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC-------CCchhH
Confidence 4567899999999999999999999999999999999999999999999999999999999998753 356778
Q ss_pred HHHHHHHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcchHHHHHhhhhhhcCCCCCCcccceecccee
Q 016253 123 EIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRT 202 (392)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T 202 (392)
..+..+.++.... ...++++++++|+.||+||+||+||.|+++|+|+|++.|||++++||+.++|.||.+|++++|.||
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~T 154 (327)
T 3ohm_A 76 AHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT 154 (327)
T ss_dssp HHHHHHHTCCGGG-CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCC
T ss_pred HHHHHHhcccccc-cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCce
Confidence 8888887765432 246899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHc
Q 016253 203 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282 (392)
Q Consensus 203 ~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~ 282 (392)
+|+.+..| +.+++++++||||||+++|++|.+||++++++|||+|+|+|||++.++++.|+|.+++.+|+++++
T Consensus 155 iGi~~~~~------~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 155 TGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp CSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred eeEEEEEE------EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 99999999 778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCc-ccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEE
Q 016253 283 QPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR 361 (392)
Q Consensus 283 ~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~ 361 (392)
++++.++|++||+||+|++++|+..+|+.. |||+| +|+ +++++|.+||.++|.++++ + ..+.+|+|+
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~--~fp~y----~g~~~~~e~a~~fi~~~F~~~~~---~---~~~~i~~~~ 296 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVD--YFPEY----DGPQRDAQAAREFILKMFVDLNP---D---SDKIIYSHF 296 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHHHTTTSCGGG--TCTTC----CSCSSCHHHHHHHHHHHHHSSCT---T---TTSCEEEEE
T ss_pred hhccCCceEEEEEECchhhhhhhccchHhh--hchhc----cCCCCCHHHHHHHHHHHHHhhcc---c---ccCCcEEEE
Confidence 999999999999999999999998888764 58888 564 7899999999999998641 1 246799999
Q ss_pred EEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 362 TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 362 TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
|||+|++||+.+|.+|++.|++++|+++||+
T Consensus 297 TsA~d~~nV~~vF~~v~~~Il~~~l~~~~l~ 327 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDTILQLNLKEYNLV 327 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred EEeecCHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 9999999999999999999999999999985
No 3
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=2.9e-81 Score=617.53 Aligned_cols=347 Identities=39% Similarity=0.659 Sum_probs=289.1
Q ss_pred hhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016253 22 ADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101 (392)
Q Consensus 22 ~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~ 101 (392)
++++++++|++||++|++|+++.++++|+||||+||||||||+||||++|.+||+++|+..|+.+|+.|++++|+.|+++
T Consensus 7 ~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~ 86 (353)
T 1cip_A 7 EDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 86 (353)
T ss_dssp ------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCCcchHHHHHHHHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcchHHHHHhhh
Q 016253 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQ 181 (392)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ 181 (392)
|+.++++. .++++++.+..+..+....+...+++++++.|..||+||+||+||.|+++|+|+|+++|||++++
T Consensus 87 ~~~~~i~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ 159 (353)
T 1cip_A 87 MGRLKIDF-------GDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLD 159 (353)
T ss_dssp HHHHTCCC-------SSTTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHH
T ss_pred HHHhCCCC-------CCcchHHHHHHHHhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHH
Confidence 99998653 24556666777665533221246899999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccc
Q 016253 182 RLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL 261 (392)
Q Consensus 182 ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l 261 (392)
||+.++|.||.+|++++|.+|+|+.+..| ..+++++++||||||+++|++|.+||+++++||||+|+|+||+++
T Consensus 160 ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~------~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l 233 (353)
T 1cip_A 160 RIAQPNYIPTQQDVLRTRVKTTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233 (353)
T ss_dssp HHTSTTCCCCHHHHHTCCCCCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEE
T ss_pred HHhcCCCCCCccccccccCceeceEEEEE------eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccc
Confidence 99999999999999999999999999988 777899999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHH
Q 016253 262 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE 341 (392)
Q Consensus 262 ~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~ 341 (392)
.|+.+.|+|.+++.+|+++++++++.++|++||+||+|++++|+..++++.+ ||+| .|+.+.+++.+|+..+|.
T Consensus 234 ~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~--fp~~----~g~~~~~e~~~~~~~~f~ 307 (353)
T 1cip_A 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEY----AGSNTYEEAAAYIQCQFE 307 (353)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGT--CTTC----CSCSCHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhc--cccc----CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888766 8888 576789999999999999
Q ss_pred HHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 342 ELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 342 ~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
++.+. ...+.+++|+|||+||+||+.+|++|.+.|++.+|+++||+
T Consensus 308 ~l~~~-----~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~l~ 353 (353)
T 1cip_A 308 DLNKR-----KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353 (353)
T ss_dssp TTCSC-----TTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred Hhhcc-----cCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 87421 12467999999999999999999999999999999999985
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=2.6e-80 Score=612.62 Aligned_cols=352 Identities=31% Similarity=0.555 Sum_probs=281.9
Q ss_pred ccCccCCCCCCChhhHHHHHHcHHHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHH
Q 016253 9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH 88 (392)
Q Consensus 9 m~~~~~~~~~~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~ 88 (392)
|||++|. ++++++++|++||++|++++++.++.+||||||+||||||||+|||+++|.+||+++|+..|+..|+
T Consensus 1 mgc~~~~------~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~ 74 (362)
T 1zcb_A 1 MGCTLSA------EDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIY 74 (362)
T ss_dssp ------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHH
T ss_pred CCCCCCH------HHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHH
Confidence 8854432 4578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHhccCCC--------CCcCCcHHHHHHHHHhcCChHHHHH
Q 016253 89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRL--------DYPRLTKELAEDIETLWADPAIQET 160 (392)
Q Consensus 89 ~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~i~~LW~d~~iq~~ 160 (392)
.|++++|+.|+++|+.|+++. .++++++.+..+..+.... +...+ ++++++|+.||+||+||+|
T Consensus 75 ~n~~~s~~~il~a~~~~~i~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~ 146 (362)
T 1zcb_A 75 SNVIKGMRVLVDAREKLHIPW-------GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNA 146 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-------SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-------CCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHH
Confidence 999999999999999998653 2456666777776654321 11245 8999999999999999999
Q ss_pred HHccCCCCCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhc
Q 016253 161 YAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240 (392)
Q Consensus 161 ~~~~~~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~ 240 (392)
|.|+++|+|+|++.|||++++||+.++|.||++|++++|.+|+|+.+..| ..+++++++||||||+++|++|.+
T Consensus 147 ~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~------~~~~~~l~i~Dt~Gq~~~r~~w~~ 220 (362)
T 1zcb_A 147 YDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFE 220 (362)
T ss_dssp HHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEE------EETTEEEEEEEECC-------CTT
T ss_pred HHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEe------eeCCeEEEEEeccchhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999988 777899999999999999999999
Q ss_pred cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccc
Q 016253 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQ 320 (392)
Q Consensus 241 yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~ 320 (392)
||+++++||||+|+|+|||+|.|+.+.|+|.+++.+|+.+++++++.++|+|||+||+|++++|+..++++.+ ||+|
T Consensus 221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~--fp~y- 297 (362)
T 1zcb_A 221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDY--FLEF- 297 (362)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGT--CTTC-
T ss_pred HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhc--Cccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888765 8888
Q ss_pred cCCCCc-ccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 321 PVSTGK-QEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 321 ~~~~g~-~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
+|. .+.+++.+|+..+|..+.+. ...+.+++|+|||+||+||+.+|++|.+.|++.+|++ ||+
T Consensus 298 ---~g~~~~~~e~~~~~~~~f~~l~~~-----~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~~-~l~ 361 (362)
T 1zcb_A 298 ---EGDPHCLRDVQKFLVECFRGKRRD-----QQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQ-LML 361 (362)
T ss_dssp ---CSCTTCHHHHHHHHHHHHHTTCSS-----CC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ---cCCCCCHHHHHHHHHHHHHHhhcc-----cCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHHh-hcc
Confidence 565 78999999999999876421 0135689999999999999999999999999999999 985
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=5e-79 Score=596.17 Aligned_cols=323 Identities=34% Similarity=0.592 Sum_probs=285.1
Q ss_pred hhhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcchHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~ 124 (392)
++++|+||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.|+++.. +++++..
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~-------~~~~~~~ 75 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMK-------YQPKSKE 75 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------CCCCSGG
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC-------ChhhHHH
Confidence 468999999999999999999999999999999999999999999999999999999999987642 2333322
Q ss_pred HHHHHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcchHHHHHhhhhhhcCCCCCCcccceeccceeee
Q 016253 125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTG 204 (392)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~G 204 (392)
+ .+.. .....++++++++|+.||+||+||+||.|+++|+|+|++.|||++++||+.++|.||++|++++|.+|+|
T Consensus 76 ~---~~~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiG 150 (340)
T 4fid_A 76 F---TTED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTG 150 (340)
T ss_dssp G---SCCS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCS
T ss_pred H---hhcc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceee
Confidence 2 2222 2234689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC
Q 016253 205 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (392)
Q Consensus 205 i~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~ 284 (392)
+.+..| ..+++++++||||||+++|++|.+||+++++||||+|+|+|||++.|+.+.++|.+++.+|+++++++
T Consensus 151 i~~~~~------~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 151 IHEYDF------VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CEEEEE------ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred eEEEEE------EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 999999 77889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHH------HHHhhccCC--C---CCC
Q 016253 285 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF------EELYFQSTA--P---DRV 353 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f------~~~~~~~~~--~---~~~ 353 (392)
++.++|++||+||+|++++|+..+++..+ ||+| .|++++++|.+|+.++| .++.+.... + ...
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~--fp~y----~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 298 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTI--FPEY----TGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAV 298 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGT--CTTC----CCTTCHHHHHHHHHHHHHTTSEEEESCC-------------
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHh--hhhh----cCCCCHHHHHHHHHHhcccccchhhhhcccccccccccccc
Confidence 99999999999999999999988887665 8888 57678999999999999 554321100 0 001
Q ss_pred CcceeEEEEEeeCchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 354 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 354 ~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
+|.+|+|+|||+|+.||+.||++|++.|++ ||++.||+
T Consensus 299 ~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~-~l~~~~~~ 336 (340)
T 4fid_A 299 NEKVYTNPTNATDGSNIKRVFMLAVDVIMK-NMAANGKM 336 (340)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred CcceEEEEEEeeCcHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 267999999999999999999999999999 99999975
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=4e-77 Score=587.90 Aligned_cols=347 Identities=88% Similarity=1.358 Sum_probs=302.7
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhhcCCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcchHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIG 125 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~~~~~~~~e~~~~~~~i~~n~~~~~~~li~~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (392)
+++||||||+||||||||+|||+++|.+||+++|+..|+.+|+.|++++|+.|+++|+.|.+...+...+.+++++++.+
T Consensus 8 ~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~~ 87 (354)
T 2xtz_A 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIG 87 (354)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHHH
T ss_pred CceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999876543333344566777677
Q ss_pred HHHHhccCCCCCcCCcHHHHHHHHHhcCChHHHHHHHccCCCCCCcchHHHHHhhhhhhcCCCCCCcccceeccceeeee
Q 016253 126 EKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGV 205 (392)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~PT~~Dil~~r~~T~Gi 205 (392)
..+..+....+.+.++++++++|+.||+||+||+||.|+++|+|+|+++|||++++||+.++|.||++|++++|.+|+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi 167 (354)
T 2xtz_A 88 EKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGV 167 (354)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSE
T ss_pred HHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeecccccce
Confidence 66665543333457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 206 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 206 ~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
.++.|.+...+..+.++++|||||||+++|++|.+||++++++|||+|+++|||+|.|+.+.++|+++..+|++++++++
T Consensus 168 ~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~ 247 (354)
T 2xtz_A 168 VEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247 (354)
T ss_dssp EEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred eeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc
Confidence 99999432100015799999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEee
Q 016253 286 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL 365 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~ 365 (392)
+.++|++||+||+|++++|+..++++.++|||+|.|.+.|+++.++|.+|+.++|.++++++..++...+.+|+|+|||+
T Consensus 248 ~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~ 327 (354)
T 2xtz_A 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL 327 (354)
T ss_dssp GSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTT
T ss_pred cCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEee
Confidence 88999999999999999998878999999999998877777789999999999998876544332222356888999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhcCCC
Q 016253 366 DPKLVKKTFKLVDETLRRRHLFEAGLL 392 (392)
Q Consensus 366 d~~nI~~vF~~v~~~Il~~~l~~~~l~ 392 (392)
||+||+.+|++|++.|++++|+++||+
T Consensus 328 d~~nV~~vF~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 328 DQKLVKKTFKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999985
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.82 E-value=5.5e-20 Score=168.86 Aligned_cols=119 Identities=22% Similarity=0.185 Sum_probs=93.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...++++||||+||++++.+|..||++++++|+|+|++ +.+++.....|+..+.... ..++|++||||
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~----------~~~Sf~~i~~~~~~i~~~~-~~~~piilVgN 126 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT----------NVNSFQQTTKWIDDVRTER-GSDVIIMLVGN 126 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecc----------hhHHHHHHHHHHHHHHHhc-CCCCeEEEEee
Confidence 667789999999999999999999999999999999984 5566666667777665432 24799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.+|..+. .+.+++|||+++.||+++|+.
T Consensus 127 K~Dl~~~r~---------------------V~~~e~~~~a~~~----------------~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 127 KTDLADKRQ---------------------VSIEEGERKAKEL----------------NVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHHH----------------TCEEEEEBTTTTBSHHHHHHH
T ss_pred ccchHhcCc---------------------ccHHHHhhHHHHh----------------CCeeEEEeCCCCcCHHHHHHH
Confidence 999875432 2345666654321 256789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+++.|..
T Consensus 170 i~~~i~~ 176 (216)
T 4dkx_A 170 VAAALPG 176 (216)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9988864
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.81 E-value=1.3e-19 Score=157.46 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=92.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..++......++|++|++|
T Consensus 47 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 47 TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC----------DRDRIGISKSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT----------CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence 334678999999999999999999999999999999985 3446677778888888765556899999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+. +.++..+.+.. .. . ..+.+.+++|||+++.||+++|+.
T Consensus 117 K~Dl~~~~-----------------------~~~~~~~~~~~---~~-----~---~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 117 KQDMEQAM-----------------------TSSEMANSLGL---PA-----L---KDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp CTTSTTCC-----------------------CHHHHHHHHTG---GG-----C---TTSCEEEEECCTTTCTTHHHHHHH
T ss_pred CCCCcCCC-----------------------CHHHHHHHhCc---hh-----c---cCCceEEEECcCCCCcCHHHHHHH
Confidence 99986431 11111111110 00 0 123467889999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 163 l~~~i~~ 169 (171)
T 1upt_A 163 LVETLKS 169 (171)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9988754
No 9
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.81 E-value=1.2e-18 Score=152.67 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=78.9
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+.+.+||++|++.++..|..|+++++++|+|+|+++. ...+.+..++..+..........++|++|++||
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA-------SSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp SCCEEEEEECCC----------CCSTTCCEEEEEEETTCH-------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCCh-------HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 3456899999999999999999999999999999998531 122333333333333333333467899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+....-. ...+++.++... ...+.+++|||+++.||+++|+.+
T Consensus 128 ~Dl~~~~~~--------------------v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 128 IDAEESKKI--------------------VSEKSAQELAKS---------------LGDIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp TTSCGGGCC--------------------SCHHHHHHHHHH---------------TTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred Ccccccccc--------------------CCHHHHHHHHHh---------------cCCCeEEEEecCCCCCHHHHHHHH
Confidence 998543110 123344443221 012457889999999999999999
Q ss_pred HHHHHHhhh
Q 016253 378 DETLRRRHL 386 (392)
Q Consensus 378 ~~~Il~~~l 386 (392)
.+.+++++.
T Consensus 173 ~~~~~~~~~ 181 (182)
T 1ky3_A 173 ARSALQQNQ 181 (182)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhc
Confidence 999987653
No 10
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=9.1e-20 Score=161.58 Aligned_cols=121 Identities=25% Similarity=0.381 Sum_probs=90.1
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.++.+++|||+||+.++..|..|+++++++|||+|++ +..++.+...++..++......++|++|++||+
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 127 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSA----------DRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 127 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETT----------CGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECc----------CHHHHHHHHHHHHHHHhChhhcCCCEEEEEECc
Confidence 3678999999999999999999999999999999984 445677777888888765545679999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.++. ..++..+.+. +. .. ..+.+.+++|||+++.||+++|+.+.
T Consensus 128 Dl~~~~-----------------------~~~~~~~~~~-----~~---~~---~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 128 DLLTAA-----------------------PASEIAEGLN-----LH---TI---RDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TSTTCC-----------------------CHHHHHHHTT-----GG---GC---CSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CcccCC-----------------------CHHHHHHHhC-----ch---hc---cCCceEEEEccCCCCCCHHHHHHHHH
Confidence 986531 1112111110 00 00 12346788999999999999999998
Q ss_pred HHHHH
Q 016253 379 ETLRR 383 (392)
Q Consensus 379 ~~Il~ 383 (392)
+.+.+
T Consensus 174 ~~~~~ 178 (181)
T 1fzq_A 174 KNVNA 178 (181)
T ss_dssp HTC--
T ss_pred HHHHh
Confidence 87654
No 11
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=157.06 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=89.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++|++|
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 137 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVT----------SLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137 (201)
T ss_dssp ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETT----------CHHHHHHHHHHHHHHHC-----CCCEEEEEE
T ss_pred CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 456678999999999999999999999999999999984 4456666777777777655556789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++..+.... .+.+++|||+++.||+++|+.
T Consensus 138 K~Dl~~~~~---------------------v~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 138 KADLSPERE---------------------VQAVEGKKLAESW----------------GATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHHH----------------TCEEEECCTTCHHHHHHHHHH
T ss_pred CccCccccc---------------------cCHHHHHHHHHHh----------------CCeEEEEeCCCCCCHHHHHHH
Confidence 999865421 1223343332211 246788999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+.+..
T Consensus 181 l~~~i~~~~ 189 (201)
T 3oes_A 181 VIQEIARVE 189 (201)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 999987654
No 12
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.80 E-value=2.5e-19 Score=154.65 Aligned_cols=123 Identities=20% Similarity=0.323 Sum_probs=91.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+++.+++|||+|++.++..|..|+++++++|+|+|++ +.+++.+...++..+.......++|++|++|
T Consensus 40 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETT----------CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 445678999999999999999999999999999999984 4456777778888888765566899999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.++. ..++..+. +... .. ..+.+.+++|||+++.||+++|+.
T Consensus 110 K~Dl~~~~-----------------------~~~~~~~~----~~~~----~~---~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 110 KQDLPNAM-----------------------NAAEITDK----LGLH----SL---RHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp CTTSTTCC-----------------------CHHHHHHH----TTGG----GC---SSCCEEEEECBTTTTBTHHHHHHH
T ss_pred CcCCcCCC-----------------------CHHHHHHH----hCcc----cc---cCccEEEEEcccCCCcCHHHHHHH
Confidence 99996431 01111111 1000 00 123467889999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 156 l~~~i~~ 162 (164)
T 1r8s_A 156 LSNQLRN 162 (164)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9887754
No 13
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.80 E-value=8.5e-19 Score=154.70 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+.+||++|++.++..|..|+++++++|||+|+++ ..++.....|+..+.... ..++|++|++|
T Consensus 55 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~n 123 (186)
T 2bme_A 55 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDARMLA-SQNIVIILCGN 123 (186)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 4555789999999999999999999999999999999853 334444445555544322 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.+++|||+++.||+++|+.
T Consensus 124 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 124 KKDLDADRE---------------------VTFLEASRFAQE----------------NELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence 999864311 123344443221 1256789999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.++++.
T Consensus 167 l~~~~~~~~ 175 (186)
T 2bme_A 167 CARKILNKI 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
No 14
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1e-18 Score=155.11 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=90.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.+...|+..+.......++|++|++|
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT----------RRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Confidence 556678999999999999999999999999999999985 3344555556677776544445799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.++... ..+.+++|||+++.||+++|+.
T Consensus 130 K~Dl~~~~----------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 130 KIDKENRE----------------------VDRNEGLKFARK----------------HSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp CTTSSSCC----------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CCcCcccc----------------------cCHHHHHHHHHH----------------cCCEEEEecCCCCCCHHHHHHH
Confidence 99984321 123344444321 1256788999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 172 l~~~~~~ 178 (195)
T 1x3s_A 172 LVEKIIQ 178 (195)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 15
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.80 E-value=8.8e-19 Score=151.31 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=87.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++++|+|++ +..++.+...++..+.......++|+++++|
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1c1y_A 47 DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT----------AQSTFNDLQDLREQILRVKDTEDVPMILVGN 116 (167)
T ss_dssp SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCcCCCcEEEEEE
Confidence 556678999999999999999999999999999999985 3344445555555555433345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.++... + ..+.++++||+++.||+++|+.
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~~-~--------------~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 117 KCDLEDERV---------------------VGKEQGQNLARQ-W--------------CNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH-T--------------TSCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------CCHHHHHHHHHH-c--------------cCCcEEEecCCCCCCHHHHHHH
Confidence 999965421 122334333211 0 1256788999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.80 E-value=1e-18 Score=153.64 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=90.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++|++|
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 119 (181)
T 3t5g_A 50 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVT----------SIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119 (181)
T ss_dssp TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHC----CCEEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 555678999999999999999999999999999999984 4455666666777776554445789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.++++||+++.||+++|+.
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 120 KKDLHMERV---------------------ISYEEGKALAES----------------WNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTSHHHHHHHHHH
T ss_pred Cccchhcce---------------------ecHHHHHHHHHH----------------hCCcEEEEecCCCCCHHHHHHH
Confidence 999864321 223444444221 1245788999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+...+
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999887543
No 17
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=2.2e-19 Score=159.37 Aligned_cols=125 Identities=21% Similarity=0.332 Sum_probs=94.1
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+++.+.+|||+|++.++..|..|+++++++|+|+|++ +.+++.+...++..+.......++|+++++||
T Consensus 63 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 132 (189)
T 2x77_A 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST----------DRDRMGVAKHELYALLDEDELRKSLLLIFANK 132 (189)
T ss_dssp ETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETT----------CCTTHHHHHHHHHHHHTCSTTTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhhhhcCCCeEEEEEEC
Confidence 34578999999999999999999999999999999984 34567777888888887766678999999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.++. ..++..+.+.. .. . ..+.+.+++|||+++.||+++|+.+
T Consensus 133 ~Dl~~~~-----------------------~~~~~~~~~~~---~~-----~---~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 133 QDLPDAA-----------------------SEAEIAEQLGV---SS-----I---MNRTWTIVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp TTSTTCC-----------------------CHHHHHHHTTG---GG-----C---CSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCcCCC-----------------------CHHHHHHHhCh---hh-----c---cCCceEEEEccCCCccCHHHHHHHH
Confidence 9996531 11111111100 00 0 1234678899999999999999999
Q ss_pred HHHHHHhhh
Q 016253 378 DETLRRRHL 386 (392)
Q Consensus 378 ~~~Il~~~l 386 (392)
.+.+.+..+
T Consensus 179 ~~~i~~~~~ 187 (189)
T 2x77_A 179 VERLREQGL 187 (189)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhccc
Confidence 998876543
No 18
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.80 E-value=4.6e-19 Score=153.21 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=85.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... .+.|+++++|
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piilv~n 117 (168)
T 1z2a_A 50 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVVAEV--GDIPTALVQN 117 (168)
T ss_dssp TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHH--CSCCEEEEEE
T ss_pred CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEE
Confidence 4456789999999999999999999999999999999853 233444444555554332 4689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.++... ..+.++.+||+++.||+++|+.
T Consensus 118 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 118 KIDLLDDSC---------------------IKNEEAEGLAKR----------------LKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEECBTTTTBSSHHHHHH
T ss_pred CcccCcccc---------------------cCHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHH
Confidence 999865321 122333333221 1256788999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+++
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988763
No 19
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.80 E-value=7.1e-19 Score=156.44 Aligned_cols=122 Identities=23% Similarity=0.425 Sum_probs=91.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC--CCceEEEE
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF--EKTSFMLF 294 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~--~~~~iiL~ 294 (392)
..+++.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..+...... .++|++|+
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 63 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS----------DRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETT----------CHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 344578999999999999999999999999999999984 455677777888888876555 67999999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+.++ ...++..+++.. ..+ ..+.+.+++|||+++.||+++|
T Consensus 133 ~nK~Dl~~~-----------------------~~~~~~~~~~~~--~~~---------~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 133 ANKMDLRDA-----------------------VTSVKVSQLLCL--ENI---------KDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp EECTTSTTC-----------------------CCHHHHHHHHTG--GGC---------CSSCEEEEECBTTTTBTHHHHH
T ss_pred EeCcCcccC-----------------------CCHHHHHHHhCh--hhc---------cCCceEEEEccCCCCcCHHHHH
Confidence 999999642 112222222210 000 1234678899999999999999
Q ss_pred HHHHHHHH
Q 016253 375 KLVDETLR 382 (392)
Q Consensus 375 ~~v~~~Il 382 (392)
+.+.+.+.
T Consensus 179 ~~l~~~i~ 186 (190)
T 2h57_A 179 DWLQDQIQ 186 (190)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988763
No 20
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=154.63 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=94.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++|++|
T Consensus 58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (206)
T 2bov_A 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN 127 (206)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 455678999999999999999999999999999999985 3445556666677776654445799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++.... .+.++++||+++.||+++|+.
T Consensus 128 K~Dl~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 128 KSDLEDKRQ---------------------VSVEEAKNRAEQW----------------NVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHHH----------------TCEEEEECTTTCTTHHHHHHH
T ss_pred ccCcccccc---------------------ccHHHHHHHHHHh----------------CCeEEEEeCCCCCCHHHHHHH
Confidence 999865321 2234555544221 245788999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+.+.+.....
T Consensus 171 l~~~i~~~~~ 180 (206)
T 2bov_A 171 LMREIRARKM 180 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccc
Confidence 9999986543
No 21
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=159.45 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=89.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|++|++|
T Consensus 70 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~n 138 (200)
T 2o52_A 70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNSLAAWLTDARTLA-SPNIVVILCGN 138 (200)
T ss_dssp TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHT-CTTCEEEEEEE
T ss_pred CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 4455789999999999999999999999999999999853 334444555555554432 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.+++|||+++.||+++|+.
T Consensus 139 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 139 KKDLDPERE---------------------VTFLEASRFAQE----------------NELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHH
T ss_pred CCCcccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999864321 123344444221 1256788999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.++.+.
T Consensus 182 l~~~i~~~~ 190 (200)
T 2o52_A 182 CARTILNKI 190 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=1.5e-18 Score=151.47 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=86.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|+++ ..++.+...|+..+.... ..++|+++++|
T Consensus 60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~n 128 (179)
T 1z0f_A 60 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLT-NPNTVIILIGN 128 (179)
T ss_dssp TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 5566789999999999999999999999999999999853 233333344444443322 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|... ..+.++++||+++.||+++|+.
T Consensus 129 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 129 KADLEAQRD---------------------VTYEEAKQFAEE----------------NGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999964321 123444444321 1256789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+++
T Consensus 172 l~~~i~~ 178 (179)
T 1z0f_A 172 AAKKIYQ 178 (179)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9887754
No 23
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.79 E-value=1.4e-18 Score=152.88 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=92.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++|++|
T Consensus 62 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 131 (187)
T 2a9k_A 62 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN 131 (187)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445578999999999999999999999999999999985 3345555566666665543345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+++.. ..+.++++||+++.||+++|+.
T Consensus 132 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 132 KSDLEDKRQ---------------------VSVEEAKNRAEQ----------------WNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CccccccCc---------------------cCHHHHHHHHHH----------------cCCeEEEeCCCCCCCHHHHHHH
Confidence 999865321 123444444321 1256788999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+.+.+..+..
T Consensus 175 l~~~i~~~~~ 184 (187)
T 2a9k_A 175 LMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999876654
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=1.4e-18 Score=149.68 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=87.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++++|+|++ +..++.....|+..+.......++|+++++|
T Consensus 48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 117 (168)
T 1u8z_A 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT----------EMESFAATADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 455678999999999999999999999999999999985 3345555566666665543445789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++.... .+.++.+||+++.||+++|+.
T Consensus 118 K~Dl~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 118 KSDLEDKRQ---------------------VSVEEAKNRADQW----------------NVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHHH----------------TCEEEECCTTTCTTHHHHHHH
T ss_pred CccccccCc---------------------cCHHHHHHHHHHc----------------CCeEEEeCCCCCCCHHHHHHH
Confidence 999865321 1234444443221 255788999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988753
No 25
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.79 E-value=3.6e-19 Score=160.20 Aligned_cols=128 Identities=19% Similarity=0.340 Sum_probs=85.1
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
++.+++|||+||+.++..|..|+++++++|+|+|++ +..++.+...++..+.......++|++|++||+|
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 137 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA----------DHERLLESKEELDSLMTDETIANVPILILGNKID 137 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETT----------CGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTT
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCC
Confidence 478999999999999999999999999999999984 4557777888888888765456799999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhcc-CCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS-TAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~-~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
+..+ + +.+++.+++........+.. .......+.+.+++|||++++||+++|+.+.
T Consensus 138 l~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 138 RPEA-I----------------------SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp STTC-C----------------------CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cccc-C----------------------CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 8642 1 12222222211000000000 0000012346788999999999999999887
Q ss_pred HH
Q 016253 379 ET 380 (392)
Q Consensus 379 ~~ 380 (392)
+.
T Consensus 195 ~~ 196 (198)
T 1f6b_A 195 QY 196 (198)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.78 E-value=5.4e-18 Score=148.09 Aligned_cols=124 Identities=17% Similarity=0.243 Sum_probs=89.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|+++- .+...+..++..+..........++|+++++|
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~n 124 (177)
T 1wms_A 52 DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS-------QSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124 (177)
T ss_dssp TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH-------HHHHHHHHHHHHHHHHccccccCCCcEEEEEE
Confidence 45567899999999999999999999999999999998631 22333444444444444433346789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.++... ...+.++.|||+++.||+++|+.
T Consensus 125 K~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 125 KIDISERQ----------------------VSTEEAQAWCRD---------------NGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp CTTCSSCS----------------------SCHHHHHHHHHH---------------TTCCCEEECCTTTCTTHHHHHHH
T ss_pred CCcccccc----------------------cCHHHHHHHHHh---------------cCCceEEEEeCCCCCCHHHHHHH
Confidence 99986321 123444444321 11255788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+++.
T Consensus 168 l~~~~~~~ 175 (177)
T 1wms_A 168 AVRRVLAT 175 (177)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99888653
No 27
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=1e-18 Score=156.08 Aligned_cols=124 Identities=16% Similarity=0.268 Sum_probs=87.8
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.++.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..+.......++|++|++||+
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 134 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA----------DPERFDEARVELDALFNIAELKDVPFVILGNKI 134 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETT----------CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC----------ChHHHHHHHHHHHHHHcchhhcCCCEEEEEECC
Confidence 3478999999999999999999999999999999984 455677778888888776545679999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.++ + ..+++.+++.... ......-...+.+.+++|||++++||+++|+.+.
T Consensus 135 Dl~~~-~----------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 135 DAPNA-V----------------------SEAELRSALGLLN----TTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp TSTTC-C----------------------CHHHHHHHTTCSS----CCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred CCcCC-C----------------------CHHHHHHHhCCcc----ccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 99642 1 1111111110000 0000000012346788999999999999999886
Q ss_pred H
Q 016253 379 E 379 (392)
Q Consensus 379 ~ 379 (392)
+
T Consensus 188 ~ 188 (190)
T 1m2o_B 188 Q 188 (190)
T ss_dssp T
T ss_pred h
Confidence 5
No 28
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=3.6e-19 Score=156.71 Aligned_cols=123 Identities=19% Similarity=0.341 Sum_probs=89.5
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.++.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..+.......++|+++++||+
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 129 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST----------DKDRMSTASKELHLMLQEEELQDAALLVFANKQ 129 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETT----------CTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHcChhhCCCeEEEEEECC
Confidence 4578999999999999999999999999999999984 446677778888888876556789999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.++. ..++..+++. . ... ..+.+.+++|||+++.||+++|+.+.
T Consensus 130 Dl~~~~-----------------------~~~~i~~~~~-----~---~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 130 DQPGAL-----------------------SASEVSKELN-----L---VEL---KDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TSTTCC-----------------------CHHHHHHHTT-----T---TTC---CSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred CCCCCC-----------------------CHHHHHHHhC-----c---ccc---cCCceEEEEccCCCCcCHHHHHHHHH
Confidence 986431 1122222111 0 000 12346788999999999999999999
Q ss_pred HHHHHhh
Q 016253 379 ETLRRRH 385 (392)
Q Consensus 379 ~~Il~~~ 385 (392)
+.+.++.
T Consensus 176 ~~~~~~q 182 (183)
T 1moz_A 176 DVIKEEQ 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9887653
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.78 E-value=5.3e-18 Score=150.83 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=88.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|++|++|
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~ilv~n 129 (196)
T 3tkl_A 61 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDRYA-SENVNKLLVGN 129 (196)
T ss_dssp TTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 5556789999999999999999999999999999999853 334444445555543322 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++..+... ..+.+++|||+++.||+++|+.
T Consensus 130 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 130 KCDLTTKKV---------------------VDYTTAKEFADS----------------LGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCCEEEECTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCcEEEEeCCCCCCHHHHHHH
Confidence 999865421 122333332211 1245788999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+.+..
T Consensus 173 l~~~i~~~~ 181 (196)
T 3tkl_A 173 MAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999988654
No 30
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.78 E-value=4.7e-18 Score=153.00 Aligned_cols=120 Identities=19% Similarity=0.269 Sum_probs=88.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|+++ ..++.....|+..+.... ..++|++|++|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~n 121 (206)
T 2bcg_Y 53 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDRYA-TSTVLKLLVGN 121 (206)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 5556789999999999999999999999999999999853 334445555555554322 34689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|... ..+.+++|||+++.||+++|+.
T Consensus 122 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 122 KCDLKDKRV---------------------VEYDVAKEFADA----------------NKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCCEEECCTTTCTTHHHHHHH
T ss_pred CCCCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999965421 123344443221 1245788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+...
T Consensus 165 l~~~i~~~ 172 (206)
T 2bcg_Y 165 MARQIKES 172 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 31
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.78 E-value=4.9e-18 Score=146.14 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=89.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++++|+|++ +..++.+...++..+.......+.|+++++|
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1kao_A 47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLV----------NQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116 (167)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 455678999999999999999999999999999999985 3445566666777776544445799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++.... .+.++++||+++.||+++|+.
T Consensus 117 K~Dl~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 117 KVDLESERE---------------------VSSSEGRALAEEW----------------GCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHHH----------------TSCEEEECTTCHHHHHHHHHH
T ss_pred CCccccccc---------------------CCHHHHHHHHHHh----------------CCCEEEecCCCCcCHHHHHHH
Confidence 999864321 1123333332211 145778999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988774
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.78 E-value=3.6e-18 Score=147.63 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=87.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.... ..++|++|++|
T Consensus 51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~iilv~n 119 (170)
T 1r2q_A 51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT----------NEESFARAKNWVKELQRQA-SPNIVIALSGN 119 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 555678999999999999999999999999999999985 3344555556666665432 34789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.++++||+++.||+++|+.
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 120 KADLANKRA---------------------VDFQEAQSYADD----------------NSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CccCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999865321 123344443221 1256788999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 87654
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.78 E-value=3.1e-18 Score=150.22 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=88.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|||+|++ +..++.+...|+..+.... ..++|+++++|
T Consensus 57 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~n 125 (181)
T 2efe_B 57 NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT----------NQASFERAKKWVQELQAQG-NPNMVMALAGN 125 (181)
T ss_dssp TTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 445678999999999999999999999999999999985 3344555566666665532 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|... ..+.++++||+++.||+++|+.
T Consensus 126 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 126 KSDLLDARK---------------------VTAEDAQTYAQE----------------NGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp CTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEECCSSSCTTHHHHHHH
T ss_pred CCccccccc---------------------CCHHHHHHHHHH----------------cCCEEEEEECCCCCCHHHHHHH
Confidence 999864321 123444444321 1256789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+..
T Consensus 169 l~~~~~~ 175 (181)
T 2efe_B 169 IARRLPR 175 (181)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9887654
No 34
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=1e-17 Score=148.79 Aligned_cols=120 Identities=14% Similarity=0.281 Sum_probs=88.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+.+|||+|++.++..|..|+++++++|||+|+++ ..++.....|+..+... ...++|++|++|
T Consensus 67 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~n 135 (189)
T 2gf9_A 67 HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN----------QESFAAVQDWATQIKTY-SWDNAQVILVGN 135 (189)
T ss_dssp TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 5566789999999999999999999999999999999853 33444444555555432 234789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... + .+.++++||+++.||+++|+.
T Consensus 136 K~Dl~~~~~---------------------~~~~~~~~~~~~-~---------------~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 136 KCDLEDERV---------------------VPAEDGRRLADD-L---------------GFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH-H---------------TCEEEECBTTTTBSHHHHHHH
T ss_pred CcccccccC---------------------CCHHHHHHHHHH-c---------------CCeEEEEECCCCCCHHHHHHH
Confidence 999965321 122333333221 1 256789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.++
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 35
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=154.74 Aligned_cols=120 Identities=15% Similarity=0.268 Sum_probs=88.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+... ...++|++|++|
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~n 136 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWATQIKTY-SWDNAQVILVGN 136 (191)
T ss_dssp TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 5567889999999999999999999999999999999853 33344444444444332 235789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++..+... ..+.+++|||+++.||+++|+.
T Consensus 137 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 137 KCDMEEERV---------------------VPTEKGQLLAEQ----------------LGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECBTTTTBSHHHHHHH
T ss_pred CCCCccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEECCCCCCHHHHHHH
Confidence 999865422 122333333221 1256789999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.++
T Consensus 180 l~~~i~~~ 187 (191)
T 3dz8_A 180 LVDAICDK 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988765
No 36
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=8e-19 Score=155.01 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=88.4
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
+++.+.+|||+|++.++..|..|+++++++|||+|++ +..++.+...++..+.......++|++|++||+
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 132 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYKMLAHEDLRKAGLLIFANKQ 132 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETT----------CTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhChhhCCCeEEEEEECC
Confidence 3478999999999999999999999999999999984 445677788888888875445679999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+..+. +.++..+++... . . ..+.+.+++|||+++.||+++|+.+.
T Consensus 133 Dl~~~~-----------------------~~~~i~~~~~~~---~-----~---~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 133 DVKECM-----------------------TVAEISQFLKLT---S-----I---KDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TSTTCC-----------------------CHHHHHHHTTGG---G-----C---CSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CcccCC-----------------------CHHHHHHHhCcc---c-----c---cCCceEEEEccCCCCcCHHHHHHHHH
Confidence 986421 112222221100 0 0 12346788999999999999999886
Q ss_pred HH
Q 016253 379 ET 380 (392)
Q Consensus 379 ~~ 380 (392)
+.
T Consensus 179 ~~ 180 (181)
T 2h17_A 179 SR 180 (181)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 37
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=6.2e-18 Score=150.59 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=90.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++|||+|+++ ..++.+...|+..+.... ..++|++|++|
T Consensus 66 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~l~~i~~~~-~~~~piilv~n 134 (191)
T 2a5j_A 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-SSNMVIMLIGN 134 (191)
T ss_dssp TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 4556789999999999999999999999999999999853 334445555565554432 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.+|... ..+.+++|||+++.||+++|+.
T Consensus 135 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 135 KSDLESRRD---------------------VKREEGEAFARE----------------HGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred CcccCCccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965321 123344444321 1256788999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.++++.
T Consensus 178 l~~~i~~~~ 186 (191)
T 2a5j_A 178 TAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 38
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=154.32 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=90.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.... ..++|++|++|
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~N 142 (201)
T 2hup_A 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT----------KRSSFLSVPHWIEDVRKYA-GSNIVQLLIGN 142 (201)
T ss_dssp TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETT----------BHHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 444578999999999999999999999999999999985 3344555555666655432 35789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce-eEEEEEeeCchhHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~-~~~~TsA~d~~nI~~vF~ 375 (392)
|+|+..++. ...+++.++... ..+ .+++|||+++.||+++|+
T Consensus 143 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 143 KSDLSELRE---------------------VSLAEAQSLAEH----------------YDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCSEEEECBTTTTBSHHHHHH
T ss_pred CCccccccc---------------------cCHHHHHHHHHH----------------cCCCEEEEEeCCCCCCHHHHHH
Confidence 999965321 123444444321 124 678999999999999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.+.++.
T Consensus 186 ~l~~~i~~~~ 195 (201)
T 2hup_A 186 RVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 39
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.77 E-value=6.8e-18 Score=147.60 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=91.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+... ..++|++|++|
T Consensus 54 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ilv~n 121 (181)
T 3tw8_B 54 NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT----------SAESFVNVKRWLHEINQN--CDDVCRILVGN 121 (181)
T ss_dssp TTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHH--CTTSEEEEEEE
T ss_pred CCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 455578999999999999999999999999999999985 334555555566666543 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++..+.... .+.+++|||+++.||+++|+.
T Consensus 122 K~Dl~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 122 KNDDPERKV---------------------VETEDAYKFAGQM----------------GIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHHH----------------TCCEEECBTTTTBSHHHHHHH
T ss_pred CCCCchhcc---------------------cCHHHHHHHHHHc----------------CCeEEEEECCCCCCHHHHHHH
Confidence 999865421 1223333332211 145678999999999999999
Q ss_pred HHHHHHHhhhh
Q 016253 377 VDETLRRRHLF 387 (392)
Q Consensus 377 v~~~Il~~~l~ 387 (392)
+.+.+....-+
T Consensus 165 l~~~~~~~~~~ 175 (181)
T 3tw8_B 165 ITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999876544
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-17 Score=150.13 Aligned_cols=120 Identities=16% Similarity=0.278 Sum_probs=89.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|+++ ..++.....|+..+... ...++|++|++|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~n 121 (203)
T 1zbd_A 53 NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVLLVGN 121 (203)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCSSCEEEEEEE
T ss_pred CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 5566789999999999999999999999999999999853 34455555555555443 234789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... + .+.++.+||+++.||+++|+.
T Consensus 122 K~Dl~~~~~---------------------~~~~~~~~~~~~-~---------------~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 122 KCDMEDERV---------------------VSSERGRQLADH-L---------------GFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp CTTCTTSCC---------------------SCHHHHHHHHHH-H---------------TCEEEECBTTTTBSSHHHHHH
T ss_pred CcccCcccc---------------------cCHHHHHHHHHH-C---------------CCeEEEEECCCCCCHHHHHHH
Confidence 999965321 122333333221 1 145788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.++
T Consensus 165 l~~~i~~~ 172 (203)
T 1zbd_A 165 LVDVICEK 172 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 41
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=5e-18 Score=146.73 Aligned_cols=120 Identities=13% Similarity=0.190 Sum_probs=86.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.... ..++|+++++|
T Consensus 48 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~n 116 (170)
T 1ek0_A 48 NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVT----------KPQSFIKARHWVKELHEQA-SKDIIIALVGN 116 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecC----------ChHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 556678999999999999999999999999999999985 3344555556666665432 35789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+.-. .....+++.++... ..+.++.|||+++.||+++|+.
T Consensus 117 K~Dl~~~~~~------------------~~v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 117 KIDXLQEGGE------------------RKVAREEGEKLAEE----------------KGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp CGGGGGSSCC------------------CCSCHHHHHHHHHH----------------HTCEEEECCTTTCTTHHHHHHH
T ss_pred CCCccccccc------------------cCCCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 9998653110 00122333333221 1256788999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 87654
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.77 E-value=7.1e-18 Score=145.97 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=84.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+... ...++|++|++|
T Consensus 51 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~~iilv~n 119 (170)
T 1z0j_A 51 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELRQH-GPPSIVVAIAGN 119 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTSEEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEE
Confidence 4556789999999999999999999999999999999853 33444444555555432 235789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++..+... ..+.++++||+++.||+++|+.
T Consensus 120 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 120 KCDLTDVRE---------------------VMERDAKDYADS----------------IHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred CCccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCcCHHHHHHH
Confidence 999965311 112333333211 1256788999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88765
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.77 E-value=3.8e-18 Score=147.91 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=78.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+... ...++|+++++|
T Consensus 51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~n 119 (170)
T 1z08_A 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKM-LGNEICLCIVGN 119 (170)
T ss_dssp SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-HGGGSEEEEEEE
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEE
Confidence 4566789999999999999999999999999999999853 23333444444443221 113689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.++... ..+.++.+||+++.||+++|+.
T Consensus 120 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 120 KIDLEKERH---------------------VSIQEAESYAES----------------VGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEEBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHH
Confidence 999865421 123444444321 1255688999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.++
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988775
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.77 E-value=7.2e-18 Score=149.06 Aligned_cols=121 Identities=14% Similarity=0.206 Sum_probs=91.0
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.+...|+..+.......++|++|++||+|
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT----------NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 568999999999999999999999999999999985 3344555566666666554446799999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+..++. ...+++.++.... .+.+++|||+++.||+++|+.+.+
T Consensus 139 l~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 139 LEDQRA---------------------VKEEEARELAEKY----------------GIPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp CGGGCC---------------------SCHHHHHHHHHHH----------------TCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccc---------------------cCHHHHHHHHHHc----------------CCCEEEEECCCCCCHHHHHHHHHH
Confidence 865321 1223343332211 145788999999999999999999
Q ss_pred HHHHhhhh
Q 016253 380 TLRRRHLF 387 (392)
Q Consensus 380 ~Il~~~l~ 387 (392)
.+.++.-+
T Consensus 182 ~~~~~~~~ 189 (195)
T 3bc1_A 182 LIMKRMER 189 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99876543
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=9.2e-18 Score=147.04 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=78.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|++|++|
T Consensus 56 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~n 124 (180)
T 2g6b_A 56 DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIHEYA-QHDVALMLLGN 124 (180)
T ss_dssp TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 4556789999999999999999999999999999999853 233333344444444322 15789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... ..+.+++|||+++.||+++|+.
T Consensus 125 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 125 KVDSAHERV---------------------VKREDGEKLAKE----------------YGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp CCSTTSCCC---------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred CcccCcccc---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999975321 122333333221 1245788999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+.+.+.+.+.
T Consensus 168 l~~~~~~~~~ 177 (180)
T 2g6b_A 168 IAKELKRRSM 177 (180)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhc
Confidence 9998876543
No 46
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=9.8e-18 Score=147.60 Aligned_cols=120 Identities=17% Similarity=0.219 Sum_probs=89.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++||++|++.++..|..|+++++++|+|+|++ +..++.....|+..+.......++|++|++|
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVT----------DKASFEHVDRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 556678899999999999999999999999999999985 3334444555555555433345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEee-CchhHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTFK 375 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~-d~~nI~~vF~ 375 (392)
|+|+.+++. ...+++.++.... .+.+++|||+ ++.||+++|+
T Consensus 132 K~Dl~~~~~---------------------v~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 132 KVDLMHLRK---------------------VTRDQGKEMATKY----------------NIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp CTTCSTTCC---------------------SCHHHHHHHHHHH----------------TCCEEEEBCSSSCBSHHHHHH
T ss_pred CCCchhccC---------------------cCHHHHHHHHHHh----------------CCeEEEeccCCCCCCHHHHHH
Confidence 999865321 2234444443221 1457889999 9999999999
Q ss_pred HHHHHHHH
Q 016253 376 LVDETLRR 383 (392)
Q Consensus 376 ~v~~~Il~ 383 (392)
.+.+.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988865
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=1.9e-17 Score=148.70 Aligned_cols=125 Identities=12% Similarity=0.193 Sum_probs=88.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|+++- .....+..++..+..........++|++|++|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (207)
T 1vg8_A 53 DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP-------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125 (207)
T ss_dssp SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCH-------HHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 45567899999999999999999999999999999998531 22233333444444443322334689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.+|... ...+.++.|||+++.||+++|+.
T Consensus 126 K~Dl~~~~----------------------~~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gi~~l~~~ 168 (207)
T 1vg8_A 126 KIDLENRQ----------------------VATKRAQAWCYS---------------KNNIPYFETSAKEAINVEQAFQT 168 (207)
T ss_dssp CTTSSCCC----------------------SCHHHHHHHHHH---------------TTSCCEEECBTTTTBSHHHHHHH
T ss_pred CCCCcccc----------------------cCHHHHHHHHHh---------------cCCceEEEEeCCCCCCHHHHHHH
Confidence 99986321 122334343221 11255789999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+++..
T Consensus 169 l~~~~~~~~ 177 (207)
T 1vg8_A 169 IARNALKQE 177 (207)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988654
No 48
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=1.1e-17 Score=147.44 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=88.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++++|+|++ +..++.+...++..+.......++|+++++|
T Consensus 48 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 117 (189)
T 4dsu_A 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117 (189)
T ss_dssp TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 455678999999999999999999999999999999984 3445556666666666544456799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+.+.++... + .+.++++||+++.||+++|+.
T Consensus 118 K~Dl~~~~----------------------~~~~~~~~~~~~-~---------------~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 118 KCDLPSRT----------------------VDTKQAQDLARS-Y---------------GIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp CTTSSSCS----------------------SCHHHHHHHHHH-H---------------TCCEEECCTTTCTTHHHHHHH
T ss_pred CccCcccc----------------------cCHHHHHHHHHH-c---------------CCeEEEEeCCCCCCHHHHHHH
Confidence 99986421 112333333211 1 145688999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+....
T Consensus 160 l~~~~~~~~ 168 (189)
T 4dsu_A 160 LVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987543
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=9.8e-18 Score=151.55 Aligned_cols=121 Identities=19% Similarity=0.175 Sum_probs=87.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.....|+..+... ...++|++|++|
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~N 139 (201)
T 2ew1_A 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQY-ASNKVITVLVGN 139 (201)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 4556789999999999999999999999999999999853 23333334444444332 124689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++. ...+++.+|... ..+.+++|||+++.||+++|+.
T Consensus 140 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 140 KIDLAERRE---------------------VSQQRAEEFSEA----------------QDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp CGGGGGGCS---------------------SCHHHHHHHHHH----------------HTCCEEECCTTTCTTHHHHHHH
T ss_pred CCCCccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999864311 123344443221 1245788999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+..+.
T Consensus 183 l~~~i~~~~ 191 (201)
T 2ew1_A 183 LACRLISEA 191 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 50
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.76 E-value=9.1e-18 Score=149.41 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=91.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.....|+..+.... ..++|++|++|
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~----------~~~s~~~~~~~l~~i~~~~-~~~~piilv~n 138 (193)
T 2oil_A 70 GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT----------KHQTYAVVERWLKELYDHA-EATIVVMLVGN 138 (193)
T ss_dssp TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETT----------CHHHHHTHHHHHHHHHTTS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCeEEEEEE
Confidence 455678999999999999999999999999999999985 3344455556666665432 35789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+. ...+++..+... ..+.++.|||+++.||+++|+.
T Consensus 139 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 139 KSDLSQARE---------------------VPTEEARMFAEN----------------NGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHH
T ss_pred CCCcccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999965321 123344443221 1256788999999999999999
Q ss_pred HHHHHHHhhh
Q 016253 377 VDETLRRRHL 386 (392)
Q Consensus 377 v~~~Il~~~l 386 (392)
+.+.++++.-
T Consensus 182 l~~~i~~~~~ 191 (193)
T 2oil_A 182 VLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999887543
No 51
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=8.7e-18 Score=146.94 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=90.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...|+..+.......++|++|++|
T Consensus 53 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 122 (181)
T 2fn4_A 53 DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIN----------DRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 122 (181)
T ss_dssp TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 445578999999999999999999999999999999985 3445556666666665543345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++..+... ..+.+++|||+++.||+++|+.
T Consensus 123 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 123 KADLESQRQ---------------------VPRSEASAFGAS----------------HHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHH
Confidence 999865321 112333333211 1256789999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+.+..
T Consensus 166 l~~~~~~~~ 174 (181)
T 2fn4_A 166 LVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999887654
No 52
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.75 E-value=9.6e-18 Score=145.39 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=85.2
Q ss_pred cccccceeEEecCCcccccc-chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~-~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+||++|++.++. .|..|+++++++++|+|++ +..++.+...|+..+.......++|++|++
T Consensus 47 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 116 (169)
T 3q85_A 47 DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT----------DRRSFSKVPETLLRLRAGRPHHDLPVILVG 116 (169)
T ss_dssp TTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred CCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC----------ChHHHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 44567889999999999887 8899999999999999985 345566666777777765555579999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+.+++. ...+++.++... ..+.+++|||+++.||+++|+
T Consensus 117 nK~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 117 NKSDLARSRE---------------------VSLEEGRHLAGT----------------LSCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHH
T ss_pred eCcchhhccc---------------------CCHHHHHHHHHH----------------cCCcEEEecCccCCCHHHHHH
Confidence 9999864321 123344333221 125678999999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.+..+
T Consensus 160 ~l~~~i~~~ 168 (169)
T 3q85_A 160 GAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999887653
No 53
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.75 E-value=4e-18 Score=152.82 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=81.8
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC--CCCceEEEEeeC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEKTSFMLFLNK 297 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~--~~~~~iiL~~NK 297 (392)
.+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.....|+..+..... ..++|++|++||
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVS----------SMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETT----------CHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECC----------CHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 568999999999999999999999999999999985 34455566666666655432 257899999999
Q ss_pred CCCcc-ccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC-chhHHHHHH
Q 016253 298 FDIFE-KKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD-PKLVKKTFK 375 (392)
Q Consensus 298 ~Dl~~-~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d-~~nI~~vF~ 375 (392)
+|+.. ++. ...+++.+|... ..+.+++|||++ +.||+++|+
T Consensus 142 ~Dl~~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQRHQ---------------------VRLDMAQDWATT----------------NTLDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C-------C---------------------CCHHHHHHHHHH----------------TTCEEEECCC-------CHHHH
T ss_pred cccchhhcc---------------------CCHHHHHHHHHH----------------cCCEEEEeccCCCCcCHHHHHH
Confidence 99965 211 123444444321 125678999999 999999999
Q ss_pred HHHHHHHHhhhh
Q 016253 376 LVDETLRRRHLF 387 (392)
Q Consensus 376 ~v~~~Il~~~l~ 387 (392)
.+.+.+.+...+
T Consensus 185 ~i~~~~~~~~~~ 196 (208)
T 2yc2_C 185 SIATTFYRNYED 196 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988765543
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=149.00 Aligned_cols=121 Identities=14% Similarity=0.189 Sum_probs=85.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|+++ ..++.+...|+..+.. ....++|++|++|
T Consensus 71 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~~~~i~~-~~~~~~piilV~N 139 (192)
T 2il1_A 71 RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMIDK-YASEDAELLLVGN 139 (192)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEE
T ss_pred CCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCcEEEEEE
Confidence 4556789999999999999999999999999999999853 2233333333333322 2234789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.++... -..+.+++|||+++.||+++|+.
T Consensus 140 K~Dl~~~~~---------------------v~~~~~~~~~~~---------------~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 140 KLDCETDRE---------------------ITRQQGEKFAQQ---------------ITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHT---------------STTCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHh---------------cCCCeEEEEeCCCCCCHHHHHHH
Confidence 999865321 112333333210 01256788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.++++
T Consensus 184 l~~~i~~~ 191 (192)
T 2il1_A 184 LVDDILKK 191 (192)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99888653
No 55
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.6e-17 Score=148.52 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=89.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++. +..|..|+++++++|+|+|+++ .+++.+...|+..+.......++|++|++|
T Consensus 72 ~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~N 140 (196)
T 2atv_A 72 DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGN 140 (196)
T ss_dssp TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 45567899999999998 8999999999999999999853 344455555555554433345789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch-hHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFK 375 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~-nI~~vF~ 375 (392)
|+|+..++. ...+++.++.... .+.+++|||+++. ||+++|+
T Consensus 141 K~Dl~~~~~---------------------v~~~~~~~~~~~~----------------~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 141 KADLDHSRQ---------------------VSTEEGEKLATEL----------------ACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHHH----------------TSEEEECCTTTCTTCHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHHh----------------CCeEEEECCCcCCcCHHHHHH
Confidence 999865421 1234444443221 2567889999999 9999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.++++.
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999988654
No 56
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=3.8e-17 Score=145.19 Aligned_cols=120 Identities=14% Similarity=0.094 Sum_probs=89.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++ |+++++++|+|+|++ +..++.+...|+..+.......++|++|++|
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLE----------DEISFQTVYNYFLRLCSFRNASEVPMVLVGT 127 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 5566789999999999887 899999999999984 4556667677888887654445789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+.-. ....+++.++.... ..+.+++|||+++.||+++|+.
T Consensus 128 K~Dl~~~~~~-------------------~v~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 128 QDAISAANPR-------------------VIDDSRARKLSTDL---------------KRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp CTTCBTTBCC-------------------CSCHHHHHHHHHHT---------------TTCEEEEEBTTTTBTHHHHHHH
T ss_pred Cccccccccc-------------------ccCHHHHHHHHHHc---------------CCCeEEEecCCCCCCHHHHHHH
Confidence 9998532110 02334444443211 1145688999999999999999
Q ss_pred HHHHHHHhh
Q 016253 377 VDETLRRRH 385 (392)
Q Consensus 377 v~~~Il~~~ 385 (392)
+.+.+++..
T Consensus 174 l~~~i~~~~ 182 (184)
T 3ihw_A 174 VAQKVVALR 182 (184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999887653
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=2.1e-17 Score=142.98 Aligned_cols=119 Identities=15% Similarity=0.242 Sum_probs=85.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|+++++|
T Consensus 48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~n 116 (170)
T 1g16_A 48 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVNEHA-NDEAQLLLVGN 116 (170)
T ss_dssp SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 4456789999999999999999999999999999999853 233334444555444322 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.++.... .+.++++||+++.||+++|+.
T Consensus 117 K~Dl~~~~----------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 117 KSDMETRV----------------------VTADQGEALAKEL----------------GIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp CTTCTTCC----------------------SCHHHHHHHHHHH----------------TCCEEECBTTTTBSHHHHHHH
T ss_pred CccCCcCc----------------------cCHHHHHHHHHHc----------------CCeEEEEECCCCCCHHHHHHH
Confidence 99983321 1223333332211 145788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.++
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988654
No 58
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.75 E-value=1.6e-17 Score=148.16 Aligned_cols=123 Identities=12% Similarity=0.166 Sum_probs=88.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+....|...+.. ...++|++|++|
T Consensus 67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~n 135 (194)
T 3reg_A 67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVN----------NRTSFDNISTKWEPEIKH-YIDTAKTVLVGL 135 (194)
T ss_dssp TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHH-HCTTSEEEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHH-hCCCCCEEEEEE
Confidence 556678999999999999999999999999999999985 344555543333333322 135789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCccee-EEEEEeeCchhHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK-IYRTTALDPKLVKKTFK 375 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~-~~~TsA~d~~nI~~vF~ 375 (392)
|+|+..+.... ...+++.++.... .+. +++|||+++.||+++|+
T Consensus 136 K~Dl~~~~~~~-------------------~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 136 KVDLRKDGSDD-------------------VTKQEGDDLCQKL----------------GCVAYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp CGGGCCTTTTC-------------------CCHHHHHHHHHHH----------------TCSCEEECBTTTTBSHHHHHH
T ss_pred ChhhccCCCCc-------------------ccHHHHHHHHHhc----------------CCCEEEEeecCCCCCHHHHHH
Confidence 99997532100 2334444443221 122 67899999999999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.++.+.
T Consensus 181 ~l~~~i~~~~ 190 (194)
T 3reg_A 181 KSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHCSC
T ss_pred HHHHHHHhcC
Confidence 9999887543
No 59
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=4.6e-18 Score=148.66 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=83.4
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.+.+++|||+|++.++..|..|+++++++|+|+|+++.+ +.+.+..++..+....... ...+|++|++||+|
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~-~~~~~iilv~nK~D 126 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQ-------SFENLEDWYTVVKKVSEES-ETQPLVALVGNKID 126 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHH-------HHHTHHHHHHHHHHHHHHH-TCCCEEEEEEECGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHH-------HHHHHHHHHHHHHHHhccc-CCCCeEEEEEEccc
Confidence 468999999999999999999999999999999986321 2222333333333322111 12345899999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+..++. ...+++.+|... ..+.+++|||+++.||+++|+.+.+
T Consensus 127 l~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 127 LEHMRT---------------------IKPEKHLRFCQE----------------NGFSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp GGGGCS---------------------SCHHHHHHHHHH----------------HTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred cccccc---------------------cCHHHHHHHHHH----------------cCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 865321 122344444321 1256789999999999999999999
Q ss_pred HHHHhhh
Q 016253 380 TLRRRHL 386 (392)
Q Consensus 380 ~Il~~~l 386 (392)
.+++..+
T Consensus 170 ~~~~~~~ 176 (178)
T 2hxs_A 170 EILGIKL 176 (178)
T ss_dssp HHTTCCC
T ss_pred HHHhhhh
Confidence 8876543
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=146.82 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=90.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+|++.++..|..|+++++++|||+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~ 131 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVV----------SPSSFQNVSEKWVPEIRCH--CPKAPIILVG 131 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CSSSCEEEEE
T ss_pred CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 445678999999999999999999999999999999985 334455554 344444432 2378999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+.-....+ .+.. ......+++..+... + ....+++|||+++.||+++|+
T Consensus 132 nK~Dl~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~-~--------------~~~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 132 TQSDLREDVKVLIEL------DKCK---EKPVPEEAAKLLAEE-I--------------KAASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp ECGGGGGCHHHHHHH------HTTT---CCCCCHHHHHHHHHH-H--------------TCSEEEECCTTTCTTHHHHHH
T ss_pred ECHhhhhchhhhhhh------cccc---cccCCHHHHHHHHHh-c--------------CCcEEEEEecCCCCCHHHHHH
Confidence 999997542110000 0000 001234444444321 1 013568899999999999999
Q ss_pred HHHHHHHHhhh
Q 016253 376 LVDETLRRRHL 386 (392)
Q Consensus 376 ~v~~~Il~~~l 386 (392)
.+.+.++...-
T Consensus 188 ~l~~~~~~~~~ 198 (201)
T 2q3h_A 188 AAIVAGIQYSD 198 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcccc
Confidence 99999876543
No 61
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.74 E-value=1.4e-17 Score=151.10 Aligned_cols=118 Identities=16% Similarity=0.240 Sum_probs=89.5
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
.+.+++|||+|++.++..|..|+++++++|||+|++ +..++.+...|+..+.......++|++|++||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~----------~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT----------SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETT----------CHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 468999999999999999999999999999999984 3445556666666665544446899999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+..++. ...+++.+|... ..+.+++|||+++.||+++|+.+.+
T Consensus 153 l~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 153 LPDQRE---------------------VNERQARELADK----------------YGIPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp CGGGCC---------------------SCHHHHHHHHHH----------------TTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred cccccc---------------------cCHHHHHHHHHH----------------CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 865321 122334343221 1245788999999999999999999
Q ss_pred HHHHh
Q 016253 380 TLRRR 384 (392)
Q Consensus 380 ~Il~~ 384 (392)
.+.++
T Consensus 196 ~i~~~ 200 (217)
T 2f7s_A 196 LIMKR 200 (217)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.3e-17 Score=146.12 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=86.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.... ..++|++|++|
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piiiv~N 136 (192)
T 2fg5_A 68 GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK----------QDSFYTLKKWVKELKEHG-PENIVMAIAGN 136 (192)
T ss_dssp SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------THHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEE
Confidence 4566789999999999999999999999999999999853 334444445555554322 34789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+++. ...+.+++|||+++.||+++|+.
T Consensus 137 K~Dl~~~~~---------------------v~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~ 179 (192)
T 2fg5_A 137 KCDLSDIRE---------------------VPLKDAKEYAE----------------SIGAIVVETSAKNAINIEELFQG 179 (192)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHH----------------TTTCEEEECBTTTTBSHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHH----------------HcCCEEEEEeCCCCcCHHHHHHH
Confidence 999864311 12344444421 11256789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 180 l~~~i~~ 186 (192)
T 2fg5_A 180 ISRQIPP 186 (192)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9887643
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=4.7e-17 Score=144.23 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=76.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.......++|+++++|
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~n 134 (190)
T 3con_A 65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------SKSFADINLYREQIKRVKDSDDVPMVLVGN 134 (190)
T ss_dssp TTEEEEEEEEECCC-----------CTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4556789999999999999999999999999999999853 233444444444443322234689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.++... + .+.++.|||+++.||+++|+.
T Consensus 135 K~Dl~~~~----------------------~~~~~~~~~~~~-~---------------~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 135 KCDLPTRT----------------------VDTKQAHELAKS-Y---------------GIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp CTTCSCCC----------------------SCHHHHHHHHHH-H---------------TCCEEECCTTTCTTHHHHHHH
T ss_pred CCcCCccc----------------------CCHHHHHHHHHH-c---------------CCeEEEEeCCCCCCHHHHHHH
Confidence 99986521 122344443221 1 145788999999999999999
Q ss_pred HHHHHHHhhhh
Q 016253 377 VDETLRRRHLF 387 (392)
Q Consensus 377 v~~~Il~~~l~ 387 (392)
+.+.+.+...+
T Consensus 177 l~~~~~~~~~~ 187 (190)
T 3con_A 177 LVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99998765443
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.74 E-value=2.4e-17 Score=146.39 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=84.3
Q ss_pred cccccceeEEecCCccccc-cchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r-~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++ ..|..|+++++++|||+|+++ ..++.....|+..+.......++|++|++
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~ 134 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLANDIPRILVG 134 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4456789999999999999 899999999999999999853 34444455566666554334578999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc---hhHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP---KLVKK 372 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~---~nI~~ 372 (392)
||+|+..++. ...+++.+|... ..+.+++|||+++ +||++
T Consensus 135 nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 135 NKCDLRSAIQ---------------------VPTDLAQKFADT----------------HSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCCEEECCSSSGGGGSCHHH
T ss_pred ECccccccce---------------------eCHHHHHHHHHH----------------cCCEEEEEeCCcCCcccCHHH
Confidence 9999965321 112333333211 1245789999999 99999
Q ss_pred HHHHHHHHHH
Q 016253 373 TFKLVDETLR 382 (392)
Q Consensus 373 vF~~v~~~Il 382 (392)
+|+.+.+.+.
T Consensus 178 l~~~l~~~i~ 187 (189)
T 1z06_A 178 IFMTLAHKLK 187 (189)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999887764
No 65
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=5.9e-17 Score=141.02 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=83.4
Q ss_pred cccccceeEEecCCccc--cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEE
Q 016253 217 KKSGEVYRLFDVGGQRN--ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 294 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~--~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~ 294 (392)
+...+.+.+|||+|++. ++..+..|+++++++|+|+|++ +..++.....|+..+.......++|++|+
T Consensus 48 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~~~~~~piilv 117 (175)
T 2nzj_A 48 DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA----------DRGSFESASELRIQLRRTHQADHVPIILV 117 (175)
T ss_dssp TTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT----------CHHHHHHHHHHHHHHHHCC----CCEEEE
T ss_pred CCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 44556899999999988 6777888999999999999985 34455666667766665444457999999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+..++. ...+++..|... ..+.+++|||+++.||+++|
T Consensus 118 ~NK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 118 GNKADLARCRE---------------------VSVEEGRACAVV----------------FDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EECTTCTTTCC---------------------SCHHHHHHHHHH----------------HTSEEEECBTTTTBSHHHHH
T ss_pred EEChhhccccc---------------------cCHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHH
Confidence 99999965321 122333333221 12457889999999999999
Q ss_pred HHHHHHHHHhh
Q 016253 375 KLVDETLRRRH 385 (392)
Q Consensus 375 ~~v~~~Il~~~ 385 (392)
+.+.+.+....
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 66
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=149.04 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=89.4
Q ss_pred cccccceeEEecCCcccccc-chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~-~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++. +|..||++++++|+|+|++ +..++.+...|+..+.......++|++|++
T Consensus 68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~ 137 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT----------DRRSFSKVPETLLRLRAGRPHHDLPVILVG 137 (195)
T ss_dssp TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT----------CHHHHHTHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 45567899999999998876 8899999999999999985 344555556667666654333578999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++. ...+++.+|... ..+.+++|||+++.||+++|+
T Consensus 138 nK~Dl~~~~~---------------------v~~~~~~~~a~~----------------~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 138 NKSDLARSRE---------------------VSLEEGRHLAGT----------------LSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp ECTTCTTTCC---------------------SCHHHHHHHHHH----------------TTCEEEEEBTTTTBSHHHHHH
T ss_pred echhccccCC---------------------cCHHHHHHHHHH----------------hCCEEEEEcCCCCCCHHHHHH
Confidence 9999865321 123444443221 114578999999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.+...
T Consensus 181 ~l~~~i~~~ 189 (195)
T 3cbq_A 181 GAVRQIRLR 189 (195)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999888643
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.73 E-value=6.2e-17 Score=143.21 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=87.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 51 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 118 (184)
T 1m7b_A 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS----------RPETLDSVLKKWKGEIQEF--CPNTKMLLVG 118 (184)
T ss_dssp SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCEEEEEE
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECC----------CHHHHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence 456678999999999999999999999999999999985 334444442 333333322 2478999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEee-CchhHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTF 374 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~-d~~nI~~vF 374 (392)
||+|+..+.-....+. .+. ......+++.+|.... ..+.+++|||+ ++.||+++|
T Consensus 119 nK~Dl~~~~~~~~~~~-----~~~----~~~v~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~gi~~l~ 174 (184)
T 1m7b_A 119 CKSDLRTDVSTLVELS-----NHR----QTPVSYDQGANMAKQI---------------GAATYIECSALQSENSVRDIF 174 (184)
T ss_dssp ECGGGGGCHHHHHHHH-----TTT----CCCCCHHHHHHHHHHH---------------TCSEEEECBTTTBHHHHHHHH
T ss_pred EcchhhcchhhHhhhh-----hcc----cCCCCHHHHHHHHHHc---------------CCcEEEEeeecCCCcCHHHHH
Confidence 9999975321000000 000 0113445555553321 01456789998 689999999
Q ss_pred HHHHHHHHH
Q 016253 375 KLVDETLRR 383 (392)
Q Consensus 375 ~~v~~~Il~ 383 (392)
+.+.+.+++
T Consensus 175 ~~i~~~~l~ 183 (184)
T 1m7b_A 175 HVATLACVN 183 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988864
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=4.8e-17 Score=141.90 Aligned_cols=118 Identities=21% Similarity=0.189 Sum_probs=85.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|+++++|
T Consensus 59 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~n 127 (179)
T 2y8e_A 59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------TNSFHQTSKWIDDVRTER-GSDVIIMLVGN 127 (179)
T ss_dssp TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHH-TTSSEEEEEEE
T ss_pred CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEE
Confidence 4455789999999999999999999999999999999853 333444445555554321 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++..+.... .+.++.+||+++.||+++|+.
T Consensus 128 K~Dl~~~~~---------------------~~~~~~~~~~~~~----------------~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 128 KTDLSDKRQ---------------------VSTEEGERKAKEL----------------NVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHHH----------------TCEEEEEBTTTTBSHHHHHHH
T ss_pred CCcccccCc---------------------CCHHHHHHHHHHc----------------CCeEEEEeCCCCCCHHHHHHH
Confidence 999865321 1223344433211 256788999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 887653
No 69
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=5.6e-17 Score=146.78 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=58.3
Q ss_pred ccceeEEecCCcccccc-chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC--CCCCceEEEEee
Q 016253 220 GEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEKTSFMLFLN 296 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~-~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~--~~~~~~iiL~~N 296 (392)
.+.+++|||+||+.++. .|..|+++++++|||+|++++ ...+.+...+|..++... ...++|++|++|
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 67899999999999998 899999999999999998532 223455566666655431 233689999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+..+
T Consensus 124 K~Dl~~~ 130 (214)
T 2fh5_B 124 KQDIAMA 130 (214)
T ss_dssp CTTSTTC
T ss_pred CCCCCCc
Confidence 9999754
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.72 E-value=1e-16 Score=137.44 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=85.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++++|+|++ +..++.+...|+..+.......+.|+++++|
T Consensus 47 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n 116 (166)
T 2ce2_X 47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN----------NTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 455678999999999999999999999999999999985 3344445555555554433334689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.++... + .+.++.+||+++.||+++|+.
T Consensus 117 K~Dl~~~~----------------------~~~~~~~~~~~~-~---------------~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 117 KSDLAART----------------------VESRQAQDLARS-Y---------------GIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp CTTCSCCC----------------------SCHHHHHHHHHH-H---------------TCCEEEECTTTCTTHHHHHHH
T ss_pred chhhhhcc----------------------cCHHHHHHHHHH-c---------------CCeEEEecCCCCCCHHHHHHH
Confidence 99986521 112333333221 1 245788999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 159 l~~~~~ 164 (166)
T 2ce2_X 159 LVREIR 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988775
No 71
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.2e-17 Score=149.10 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=85.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|++|++|
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~----------~~s~~~~~~~l~~i~~~~-~~~~piilv~n 126 (223)
T 3cpj_B 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK----------SSSYENCNHWLSELRENA-DDNVAVGLIGN 126 (223)
T ss_dssp TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC----------HHHHHHHHHHHHHHHHHC-C--CEEEEEEC
T ss_pred CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEE
Confidence 4455789999999999999999999999999999999853 344555555666654432 34789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|... ..+.+++|||+++.||+++|+.
T Consensus 127 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 127 KSDLAHLRA---------------------VPTEESKTFAQE----------------NQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCCC-CCCHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999865321 123344444321 1256788999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+..
T Consensus 170 l~~~i~~ 176 (223)
T 3cpj_B 170 LINTIYQ 176 (223)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998864
No 72
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=9.4e-17 Score=142.34 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=113.3
Q ss_pred HHhhhhhhcCCCCCCcccceeccceeeeeEEEeecc-CCCccccccceeEEecCCccccccchhccccccCEEEEEEEcc
Q 016253 177 MENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSP-VGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255 (392)
Q Consensus 177 l~~~~ri~~~~y~PT~~Dil~~r~~T~Gi~e~~f~~-~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls 255 (392)
++.+..-+.+.|.|+..++-....+|+|+......+ .. +...+.+++|||+||+.++..|..|+++++++|||+|++
T Consensus 31 ~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 31 LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV--KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp HHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS--SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECC
T ss_pred HHHHHhhccccccccccccccccccceeeeecccccccc--cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECC
Confidence 344444455666666555444557888887665433 22 566789999999999999999999999999999999986
Q ss_pred cccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHH
Q 016253 256 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 335 (392)
Q Consensus 256 ~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~ 335 (392)
+... ..+...+.+...|+..+ .....++|++|++||+|+..+ ...+++.++
T Consensus 109 ~~~~----~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~-----------------------~~~~~~~~~ 159 (198)
T 3t1o_A 109 PNRL----RANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDA-----------------------LPVEMVRAV 159 (198)
T ss_dssp GGGH----HHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTC-----------------------CCHHHHHHH
T ss_pred cchh----hHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccc-----------------------cCHHHHHHH
Confidence 2111 11344555555566555 234468999999999998643 123344333
Q ss_pred HHHHHHHHhhccCCCCCCCcce-eEEEEEeeCchhHHHHHHHHHHHHHHhhh
Q 016253 336 VKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFKLVDETLRRRHL 386 (392)
Q Consensus 336 i~~~f~~~~~~~~~~~~~~r~~-~~~~TsA~d~~nI~~vF~~v~~~Il~~~l 386 (392)
+. ...+ .+++|||+++.||+++|+.+.+.++++.-
T Consensus 160 ~~----------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 160 VD----------------PEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HC----------------TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HH----------------hcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 21 1224 67899999999999999999999987643
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=5.7e-17 Score=140.30 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=82.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC-CCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~-~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ...+.+...++..+... ....+.|+++++
T Consensus 47 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 47 DKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 4455689999999999999999999999999999999853 23333444444444331 123478999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++. ...+++..+... ..+.++++||+++.||+++|+
T Consensus 117 nK~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 117 NKCDESPSRE---------------------VQSSEAEALART----------------WKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp ECGGGGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECBTTTTBSHHHHHH
T ss_pred Eccccccccc---------------------cCHHHHHHHHHH----------------hCCeEEEecCCCCcCHHHHHH
Confidence 9999865321 112223222211 124578899999999999999
Q ss_pred HHHHHHH
Q 016253 376 LVDETLR 382 (392)
Q Consensus 376 ~v~~~Il 382 (392)
.+.+.+.
T Consensus 160 ~l~~~~~ 166 (172)
T 2erx_A 160 ELLNLEK 166 (172)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9887653
No 74
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.71 E-value=1.7e-16 Score=143.74 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=88.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 72 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 139 (205)
T 1gwn_A 72 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS----------RPETLDSVLKKWKGEIQEF--CPNTKMLLVG 139 (205)
T ss_dssp SSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCEEEEEE
T ss_pred CCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHH--CCCCCEEEEE
Confidence 456678999999999999999999999999999999985 334444442 343444332 2478999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEee-CchhHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTAL-DPKLVKKTF 374 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~-d~~nI~~vF 374 (392)
||+|+..+.-....+. .+. ......+++.+|.... ..+.+++|||+ ++.||+++|
T Consensus 140 nK~Dl~~~~~~~~~~~-----~~~----~~~v~~~~~~~~~~~~---------------~~~~~~e~SAk~~~~gv~~lf 195 (205)
T 1gwn_A 140 CKSDLRTDVSTLVELS-----NHR----QTPVSYDQGANMAKQI---------------GAATYIECSALQSENSVRDIF 195 (205)
T ss_dssp ECGGGGGCHHHHHHHH-----TTT----CCCCCHHHHHHHHHHH---------------TCSEEEECCTTTCHHHHHHHH
T ss_pred echhhccchhhhhhhc-----ccc----cCCCCHHHHHHHHHHc---------------CCCEEEEeeeccCCcCHHHHH
Confidence 9999975321000000 000 0113345555543321 01456789998 689999999
Q ss_pred HHHHHHHHH
Q 016253 375 KLVDETLRR 383 (392)
Q Consensus 375 ~~v~~~Il~ 383 (392)
+.+.+.+++
T Consensus 196 ~~l~~~~l~ 204 (205)
T 1gwn_A 196 HVATLACVN 204 (205)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998875
No 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=5.9e-17 Score=142.40 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=87.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 49 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 116 (186)
T 1mh1_A 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV----------SPASFENVRAKWYPEVRHH--CPNTPIILVG 116 (186)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTSCEEEEE
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHHh--CCCCCEEEEe
Confidence 556678999999999999999999999999999999985 334444444 344444332 2278999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+.-....+ .+. .......+++.++.... ....+++|||+++.||+++|+
T Consensus 117 nK~Dl~~~~~~~~~~------~~~---~~~~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 117 TKLDLRDDKDTIEKL------KEK---KLTPITYPQGLAMAKEI---------------GAVKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp ECHHHHTCHHHHHHH------HHT---TCCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHH
T ss_pred Ecccccccchhhhhh------ccc---ccccCCHHHHHHHHHhc---------------CCcEEEEecCCCccCHHHHHH
Confidence 999997542100000 000 00012344444442210 013578899999999999999
Q ss_pred HHHHHHHH
Q 016253 376 LVDETLRR 383 (392)
Q Consensus 376 ~v~~~Il~ 383 (392)
.+.+.++.
T Consensus 173 ~l~~~~~~ 180 (186)
T 1mh1_A 173 EAIRAVLC 180 (186)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHhc
Confidence 99988764
No 76
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=162.49 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=93.9
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
||+|+....+ +.+++.++||||+||+.++..|..|+++++++|+|+|++ +..++.+...++..+
T Consensus 195 pT~~~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~----------~~~s~~~~~~~~~~~ 258 (329)
T 3o47_A 195 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVNEAREELMRM 258 (329)
T ss_dssp EETTEEEEEE------EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETT----------CSSSHHHHHHHHHHH
T ss_pred cccceEEEEE------ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------chHHHHHHHHHHHHH
Confidence 3445555555 566789999999999999999999999999999999985 445667777888888
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
+......++|++||+||+|+.++. ..++..+ .+... .. ..+.+.++
T Consensus 259 ~~~~~~~~~piilV~NK~Dl~~~~-----------------------~~~~i~~----~~~~~----~~---~~~~~~~~ 304 (329)
T 3o47_A 259 LAEDELRDAVLLVFANKQDLPNAM-----------------------NAAEITD----KLGLH----SL---RHRNWYIQ 304 (329)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHH----HHTCT----TC---CSSCEEEE
T ss_pred HhhhccCCCeEEEEEECccCCccc-----------------------CHHHHHH----Hhchh----hh---hcCCCEEE
Confidence 876666789999999999986431 1111111 11100 00 13457788
Q ss_pred EEEeeCchhHHHHHHHHHHHHHH
Q 016253 361 RTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 361 ~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
.|||+++.||+++|+.+.+.+.+
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEECCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=1.5e-17 Score=151.66 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=85.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+... ..++|++|++|
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ilv~n 127 (221)
T 3gj0_A 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDLVRV--CENIPIVLCGN 127 (221)
T ss_dssp TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH--STTCCEEEEEE
T ss_pred CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence 5567889999999999999999999999999999999853 33444444555555443 24789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++... ++..+... ..+.+++|||+++.||+++|+.
T Consensus 128 K~Dl~~~~~~~-----------------------~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 128 KVDIKDRKVKA-----------------------KSIVFHRK----------------KNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp CTTSSSCSSCG-----------------------GGCCHHHH----------------HTCEEEECBGGGTBTTTHHHHH
T ss_pred CCccccccccH-----------------------HHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 99997643211 00111110 1256788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.++..
T Consensus 169 l~~~l~~~ 176 (221)
T 3gj0_A 169 LARKLIGD 176 (221)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988754
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.8e-16 Score=142.93 Aligned_cols=119 Identities=15% Similarity=0.254 Sum_probs=85.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|||+|+++ ..++.+...|+..+.... ..++|++|++|
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~n 133 (213)
T 3cph_A 65 NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD----------ERTFTNIKQWFKTVNEHA-NDEAQLLLVGN 133 (213)
T ss_dssp TTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHT-TTCSEEEEEEE
T ss_pred CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 4455789999999999999999999999999999999853 223334444555544322 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.... ...+++.++... + .+.++++||+++.||+++|+.
T Consensus 134 K~Dl~~~~----------------------~~~~~~~~~~~~-~---------------~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 134 KSDMETRV----------------------VTADQGEALAKE-L---------------GIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp CTTCSSCC----------------------SCHHHHHHHHHH-H---------------TCCEEECBTTTTBSSHHHHHH
T ss_pred CCCCcccc----------------------cCHHHHHHHHHH-c---------------CCEEEEEeCCCCCCHHHHHHH
Confidence 99983221 112333333221 1 145788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+...
T Consensus 176 l~~~~~~~ 183 (213)
T 3cph_A 176 LAKLIQEK 183 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=145.14 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=83.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++|||+|+++ ..++.+...|+..+... ...++|++|++|
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~N 141 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC----------EKSFLNIREWVDMIEDA-AHETVPIMLVGN 141 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-C---CCEEEEEE
T ss_pred CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCCCEEEEEE
Confidence 4556789999999999999999999999999999999853 23333333444443321 224689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+......... .....+++.++.... .+.+++|||+++.||+++|..
T Consensus 142 K~Dl~~~~~~~~~---------------~~v~~~~~~~~~~~~----------------~~~~~~~SA~~g~gv~el~~~ 190 (199)
T 2p5s_A 142 KADIRDTAATEGQ---------------KCVPGHFGEKLAMTY----------------GALFCETSAKDGSNIVEAVLH 190 (199)
T ss_dssp CGGGHHHHHHTTC---------------CCCCHHHHHHHHHHH----------------TCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccccccc---------------cccCHHHHHHHHHHc----------------CCeEEEeeCCCCCCHHHHHHH
Confidence 9999643110000 001233444443211 256788999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 191 l~~~i~ 196 (199)
T 2p5s_A 191 LAREVK 196 (199)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988775
No 80
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=1.7e-16 Score=142.69 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=86.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+....|...+.. ...++|++|++|
T Consensus 69 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~piilv~n 137 (201)
T 2gco_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID----------SPDSLENIPEKWTPEVKH-FCPNVPIILVGN 137 (201)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHH-HSTTCCEEEEEE
T ss_pred CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHH-hCCCCCEEEEEe
Confidence 455678999999999999999999999999999999985 333444442222222222 124789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+...... +.+.. ......+++.++.... ....+++|||+++.||+++|+.
T Consensus 138 K~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~SA~~g~gi~~l~~~ 193 (201)
T 2gco_A 138 KKDLRQDEHTRRE------LAKMK---QEPVRSEEGRDMANRI---------------SAFGYLECSAKTKEGVREVFEM 193 (201)
T ss_dssp CGGGTTCHHHHHH------HHTTT---CCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHHH
T ss_pred cHHhhcCccchhh------hcccc---cCcCCHHHHHHHHHhC---------------CCcEEEEeeCCCCCCHHHHHHH
Confidence 9999764221100 00100 0012344554442221 0125678999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.++
T Consensus 194 i~~~~l 199 (201)
T 2gco_A 194 ATRAGL 199 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 81
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=6.6e-17 Score=165.64 Aligned_cols=132 Identities=17% Similarity=0.311 Sum_probs=98.8
Q ss_pred eeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHH
Q 016253 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (392)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~ 281 (392)
|+|+....+ +.+++.+.+|||+||+.++..|..||++++++|+|+|++ +..++.+...++..++
T Consensus 353 T~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~----------~~~s~~~~~~~~~~~~ 416 (497)
T 3lvq_E 353 TVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA----------DRDRIDEARQELHRII 416 (497)
T ss_dssp CSSEEEEEE------ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETT----------CGGGHHHHHHHHHHHH
T ss_pred ccceeEEEE------EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECc----------chhHHHHHHHHHHHHh
Confidence 344444555 567789999999999999999999999999999999984 4567888888999998
Q ss_pred cCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEE
Q 016253 282 KQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR 361 (392)
Q Consensus 282 ~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~ 361 (392)
......++|++||+||+|+.++. +.++..+.+. ......+.+.+++
T Consensus 417 ~~~~~~~~p~ilv~NK~Dl~~~~-----------------------~~~~~~~~~~-----------~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 417 NDREMRDAIILIFANKQDLPDAM-----------------------KPHEIQEKLG-----------LTRIRDRNWYVQP 462 (497)
T ss_dssp TSGGGTTCEEEEEEECCSSSSCC-----------------------CHHHHHHHTT-----------CTTCCSSCEEEEE
T ss_pred hhhhcCCCcEEEEEECCCCCcCC-----------------------CHHHHHHHhc-----------hhhhhcCCeEEEE
Confidence 87766789999999999986431 1111111100 0000134567889
Q ss_pred EEeeCchhHHHHHHHHHHHHHH
Q 016253 362 TTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 362 TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
|||++++||+++|+.+.+.+.+
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 82
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.1e-16 Score=142.66 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=83.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC-CCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~-~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..+... ....++|++|++
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~piilv~ 121 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS----------KQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4556789999999999999999999999999999999853 22333333333333221 113468999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+.+ ..+++..+... ..+.++.|||+++.||+++|+
T Consensus 122 nK~Dl~~~~~----------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 122 NKCDETQREV----------------------DTREAQAVAQE----------------WKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp ECTTCSSCSS----------------------CHHHHHHHHHH----------------HTCEEEECBTTTTBSHHHHHH
T ss_pred ECccCCcccc----------------------CHHHHHHHHHH----------------hCCeEEEEecCCCCCHHHHHH
Confidence 9999864211 12333333221 124578899999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.+..+
T Consensus 164 ~l~~~~~~~ 172 (199)
T 2gf0_A 164 ELLTLETRR 172 (199)
T ss_dssp HHHHHCSSS
T ss_pred HHHHHHhhh
Confidence 998877543
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=1.4e-16 Score=141.87 Aligned_cols=135 Identities=26% Similarity=0.402 Sum_probs=98.7
Q ss_pred eeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHH
Q 016253 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281 (392)
Q Consensus 202 T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~ 281 (392)
|+|+....+ +...+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.+...++..+.
T Consensus 50 t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~~~ 113 (199)
T 4bas_A 50 TVGYNVETF------EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSS----------DHLRLCVVKSEIQAML 113 (199)
T ss_dssp CSSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHHHH
T ss_pred ccceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC----------cHHHHHHHHHHHHHHH
Confidence 444444455 567789999999999999999999999999999999985 4456677777888877
Q ss_pred cCCCC-------CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016253 282 KQPCF-------EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVD 354 (392)
Q Consensus 282 ~~~~~-------~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~ 354 (392)
..... .++|++|++||+|+..+. ..++..+.+...+. . ..
T Consensus 114 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~~~~~~~~~~~--~--------~~ 160 (199)
T 4bas_A 114 KHEDIRRELPGGGRVPFLFFANKMDAAGAK-----------------------TAAELVEILDLTTL--M--------GD 160 (199)
T ss_dssp TSHHHHSBCTTSCBCCEEEEEECTTSTTCC-----------------------CHHHHHHHHTHHHH--H--------TT
T ss_pred hChhhhhcccccCCCCEEEEEECcCCCCCC-----------------------CHHHHHHHhcchhh--c--------cC
Confidence 65222 278999999999996541 11222222211111 0 02
Q ss_pred cceeEEEEEeeCchhHHHHHHHHHHHHHHhh
Q 016253 355 RVFKIYRTTALDPKLVKKTFKLVDETLRRRH 385 (392)
Q Consensus 355 r~~~~~~TsA~d~~nI~~vF~~v~~~Il~~~ 385 (392)
+.+.+++|||+++.||+++|+.+.+.+.+..
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 3477889999999999999999999987654
No 84
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=146.66 Aligned_cols=133 Identities=15% Similarity=0.148 Sum_probs=74.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 78 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 145 (214)
T 2j1l_A 78 KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVT----------SPNSFDNIFNRWYPEVNHF--CKKVPIIVVG 145 (214)
T ss_dssp TTEEEEEEEEEC---------------CEEEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CSSCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECc----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 455678999999999999999999999999999999985 334454544 344444332 2468999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++-....+ .+.. ......+++.++.... ....+++|||+++.||+++|+
T Consensus 146 nK~Dl~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 146 CKTDLRKDKSLVNKL------RRNG---LEPVTYHRGQEMARSV---------------GAVAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp ECGGGGSCHHHHHHH------HHTT---CCCCCHHHHHHHHHHT---------------TCSEEEECBTTTTBSHHHHHH
T ss_pred EChhhhccchhhhhh------cccc---cCcccHHHHHHHHHhc---------------CCCEEEEecCCCCCCHHHHHH
Confidence 999997643110000 0000 0012345554443211 012578999999999999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.++...
T Consensus 202 ~l~~~~~~~~ 211 (214)
T 2j1l_A 202 EAAEVALSSR 211 (214)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 85
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.4e-16 Score=142.30 Aligned_cols=133 Identities=11% Similarity=0.195 Sum_probs=87.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|+++++
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~ 136 (207)
T 2fv8_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS----------PDSLENIPEKWVPEVKHF--CPNVPIILVA 136 (207)
T ss_dssp TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 4556789999999999999999999999999999999853 33444442 233333221 2468999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+...... +.+.. ......+++.++.... ....+++|||+++.||+++|+
T Consensus 137 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 137 NKKDLRSDEHVRTE------LARMK---QEPVRTDDGRAMAVRI---------------QAYDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp ECGGGGGCHHHHHH------HHHTT---CCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHH
T ss_pred Echhhhccccchhh------hhhcc---cCCCCHHHHHHHHHhc---------------CCCEEEEeeCCCCCCHHHHHH
Confidence 99999764211100 00000 0002334444442210 012567899999999999999
Q ss_pred HHHHHHHHhh
Q 016253 376 LVDETLRRRH 385 (392)
Q Consensus 376 ~v~~~Il~~~ 385 (392)
.+.+.+++..
T Consensus 193 ~l~~~i~~~~ 202 (207)
T 2fv8_A 193 TATRAALQKR 202 (207)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHHHh
Confidence 9999887553
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.69 E-value=1.2e-16 Score=144.15 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+.... .++|++|++
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~--~~~piilv~ 141 (204)
T 4gzl_A 74 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV----------SPASFENVRAKWYPEVRHHC--PNTPIILVG 141 (204)
T ss_dssp C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHHC--SSCCEEEEE
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 455678889999999999999999999999999999985 344455544 3444443322 578999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++.....+ .+.. ......+++..+.... ....+++|||+++.||+++|+
T Consensus 142 nK~Dl~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 142 TKLDLRDDKDTIEKL------KEKK---LTPITYPQGLAMAKEI---------------GAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp ECHHHHTCHHHHHHH------HHTT---CCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHH
T ss_pred echhhccchhhhhhh------hccc---cccccHHHHHHHHHhc---------------CCcEEEEeeCCCCCCHHHHHH
Confidence 999997643210000 0000 0012344444443221 113468899999999999999
Q ss_pred HHHHHH
Q 016253 376 LVDETL 381 (392)
Q Consensus 376 ~v~~~I 381 (392)
.+.+.+
T Consensus 198 ~l~~~~ 203 (204)
T 4gzl_A 198 EAIRAV 203 (204)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988754
No 87
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=1.4e-16 Score=139.61 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=81.6
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEee
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~N 296 (392)
...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++|
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~n 120 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHY--APGVPIVLVGT 120 (182)
T ss_dssp -----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCCEEEEEE
T ss_pred CEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEe
Confidence 34567899999999999999999999999999999985 334444444 233333322 23789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.+++..... ... ......+++.++.... . ...+++|||+++.||+++|+.
T Consensus 121 K~Dl~~~~~~~~~------~~~-----~~~v~~~~~~~~~~~~--------------~-~~~~~~~Sa~~~~gi~~l~~~ 174 (182)
T 3bwd_D 121 KLDLRDDKQFFID------HPG-----AVPITTVQGEELKKLI--------------G-APAYIECSSKSQENVKGVFDA 174 (182)
T ss_dssp CHHHHTCHHHHHH------C-------CCCCCHHHHHHHHHHH--------------T-CSEEEECCTTTCTTHHHHHHH
T ss_pred chhhhcCcccccc------ccc-----CCCCCHHHHHHHHHHc--------------C-CCEEEEEECCCCCCHHHHHHH
Confidence 9999765321000 000 0112344554443221 0 125678999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.++
T Consensus 175 l~~~i~ 180 (182)
T 3bwd_D 175 AIRVVL 180 (182)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 988764
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.66 E-value=3.9e-16 Score=137.79 Aligned_cols=124 Identities=18% Similarity=0.330 Sum_probs=94.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..+++.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..+.......++|+++++|
T Consensus 58 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 58 EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DRQRMQDCQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT----------CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECc----------CHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence 445689999999999999999999999999999999984 4456777788888888765556799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+. ..++..+++.. . .. ..+.+.+++|||+++.||+++|+.
T Consensus 128 K~Dl~~~~-----------------------~~~~~~~~~~~---~-----~~---~~~~~~~~~~Sa~~~~gi~~l~~~ 173 (186)
T 1ksh_A 128 KQDLPGAL-----------------------SCNAIQEALEL---D-----SI---RSHHWRIQGCSAVTGEDLLPGIDW 173 (186)
T ss_dssp CTTSTTCC-----------------------CHHHHHHHTTG---G-----GC---CSSCEEEEECCTTTCTTHHHHHHH
T ss_pred CccCCCCC-----------------------CHHHHHHHhCh---h-----hc---cCCceEEEEeeCCCCCCHHHHHHH
Confidence 99996531 11222121110 0 00 123467889999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.++
T Consensus 174 l~~~i~~~ 181 (186)
T 1ksh_A 174 LLDDISSR 181 (186)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99888654
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.65 E-value=2.2e-16 Score=141.12 Aligned_cols=133 Identities=18% Similarity=0.305 Sum_probs=94.3
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
.||+|+....+ +.+++.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..
T Consensus 58 ~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~----------~~~s~~~~~~~l~~ 121 (192)
T 2b6h_A 58 IPTIGFNVETV------EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRERVQESADELQK 121 (192)
T ss_dssp EEETTEEEEEE------EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETT----------CGGGHHHHHHHHHH
T ss_pred CCcCceeEEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC----------CHHHHHHHHHHHHH
Confidence 56777666556 567789999999999999999999999999999999984 34567777788888
Q ss_pred HHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeE
Q 016253 280 VLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKI 359 (392)
Q Consensus 280 i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~ 359 (392)
+.......++|++|++||+|+.++. ..++..+. +... .. ..+.+.+
T Consensus 122 ~~~~~~~~~~piilv~NK~Dl~~~~-----------------------~~~~i~~~----~~~~----~~---~~~~~~~ 167 (192)
T 2b6h_A 122 MLQEDELRDAVLLVFANKQDMPNAM-----------------------PVSELTDK----LGLQ----HL---RSRTWYV 167 (192)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTCC-----------------------CHHHHHHH----TTGG----GC---SSCCEEE
T ss_pred HhcccccCCCeEEEEEECCCCCCCC-----------------------CHHHHHHH----hCcc----cc---cCCceEE
Confidence 8876555689999999999986431 11111111 1000 00 1234678
Q ss_pred EEEEeeCchhHHHHHHHHHHHHH
Q 016253 360 YRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 360 ~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
++|||+++.||+++|+.+.+.+.
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHh
Confidence 89999999999999999988764
No 90
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.65 E-value=1.1e-17 Score=150.19 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=76.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+...|+..+... ...++|++|++|
T Consensus 78 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~n 146 (199)
T 3l0i_B 78 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT----------DQESFNNVKQWLQEIDRY-ASENVNKLLVGN 146 (199)
T ss_dssp TTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CC----------CSHHHHHHHHHHHHHHSC-C-CCSEEEEC-C
T ss_pred CCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECC----------CHHHHHHHHHHHHHHHHh-ccCCCCEEEEEE
Confidence 445578999999999999999999999999999999985 344555556666666443 335799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++... . +++..+ .. ...+.++++||+++.||+++|+.
T Consensus 147 K~Dl~~~~~v~--~-------------------~~~~~~-----~~-----------~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 147 KCDLTTKKVVD--Y-------------------TTAKEF-----AD-----------SLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CSSCC--CCCC--S-------------------CC-CHH-----HH-----------TTTCCBCCCCC---HHHHHHHHH
T ss_pred CccCCccccCC--H-------------------HHHHHH-----HH-----------HcCCeEEEEECCCCCCHHHHHHH
Confidence 99997543211 0 001111 10 11244568999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 190 l~~~l~ 195 (199)
T 3l0i_B 190 MAAEIK 195 (199)
T ss_dssp HTTTTT
T ss_pred HHHHHH
Confidence 877664
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.65 E-value=4.6e-15 Score=142.82 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=87.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+.+|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 199 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~ 266 (332)
T 2wkq_A 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLV----------SPASFHHVRAKWYPEVRHH--CPNTPIILVG 266 (332)
T ss_dssp TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTSCEEEEE
T ss_pred CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhh--CCCCcEEEEE
Confidence 455678889999999999999999999999999999985 334444444 333444332 1278999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+.-.... +.+.. ......+++.+|.... ....+++|||+++.||+++|+
T Consensus 267 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 267 TKLDLRDDKDTIEK------LKEKK---LTPITYPQGLAMAKEI---------------GAVKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp ECHHHHTCHHHHHH------HHHTT---CCCCCHHHHHHHHHHT---------------TCSEEEECCTTTCTTHHHHHH
T ss_pred Echhcccccchhhh------ccccc---cccccHHHHHHHHHHc---------------CCcEEEEecCCCCcCHHHHHH
Confidence 99999654210000 00000 0012345555543221 012578899999999999999
Q ss_pred HHHHHHHH
Q 016253 376 LVDETLRR 383 (392)
Q Consensus 376 ~v~~~Il~ 383 (392)
.+.+.+++
T Consensus 323 ~l~~~~~~ 330 (332)
T 2wkq_A 323 EAIRAVLC 330 (332)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99988764
No 92
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.65 E-value=9.4e-16 Score=134.83 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=78.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.... ..++|++|++|
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~n 121 (183)
T 2fu5_C 53 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIEEHA-SADVEKMILGN 121 (183)
T ss_dssp TTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 4556899999999999999999999999999999999853 344555555666665432 24689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++.+|... ..+.+++|||+++.||+++|+.
T Consensus 122 K~Dl~~~~~---------------------v~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 122 KCDVNDKRQ---------------------VSKERGEKLALD----------------YGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp C--CCSCCC---------------------SCHHHHHHHHHH----------------HTCEEEECCC---CCHHHHHHH
T ss_pred CccCCccCc---------------------CCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999965321 123444444322 1256789999999999999999
Q ss_pred HHHHHHHhhhh
Q 016253 377 VDETLRRRHLF 387 (392)
Q Consensus 377 v~~~Il~~~l~ 387 (392)
+.+.+.++.-+
T Consensus 165 l~~~i~~~~~~ 175 (183)
T 2fu5_C 165 LARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999876543
No 93
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.64 E-value=2.8e-16 Score=139.56 Aligned_cols=123 Identities=19% Similarity=0.313 Sum_probs=91.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
....+.+.+|||+|++.++..|..|+++++++|||+|++ +..++.....++..+.......++|++|++|
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (188)
T 1zd9_A 63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA----------DQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132 (188)
T ss_dssp EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT----------CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECC----------CHHHHHHHHHHHHHHHhCcccCCCCEEEEEE
Confidence 556789999999999999999999999999999999984 4456777788888888764456799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+. +.++..+. +... .. ....+.+++|||+++.||+++|+.
T Consensus 133 K~Dl~~~~-----------------------~~~~~~~~----~~~~----~~---~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 133 KRDLPGAL-----------------------DEKELIEK----MNLS----AI---QDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp CTTSTTCC-----------------------CHHHHHHH----TTGG----GC---CSSCEEEEECCTTTCTTHHHHHHH
T ss_pred CCCCccCC-----------------------CHHHHHHH----hChh----hh---ccCCeeEEEEECCCCCCHHHHHHH
Confidence 99986431 01111111 1000 00 123466789999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+.+
T Consensus 179 l~~~~~~ 185 (188)
T 1zd9_A 179 LIQHSKS 185 (188)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9876643
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=4.9e-16 Score=137.61 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=88.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..+++.+++|||+|++.++..|..|+++++++|+|+|++ +.+++.+...++..+.......+.|++|++|
T Consensus 56 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (187)
T 1zj6_A 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST----------DRERISVTREELYKMLAHEDLRKAGLLIFAN 125 (187)
T ss_dssp EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETT----------CTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence 445689999999999999999999999999999999984 4456777788888888764446799999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+.++ ...++..+++... .+ ..+.+.+++|||+++.||+++|+.
T Consensus 126 K~Dl~~~-----------------------~~~~~i~~~~~~~---~~--------~~~~~~~~~~Sa~~g~gi~~l~~~ 171 (187)
T 1zj6_A 126 KQDVKEC-----------------------MTVAEISQFLKLT---SI--------KDHQWHIQACCALTGEGLCQGLEW 171 (187)
T ss_dssp CTTSTTC-----------------------CCHHHHHHHHTGG---GC--------CSSCEEEEECBTTTTBTHHHHHHH
T ss_pred CCCCcCC-----------------------CCHHHHHHHhChh---hh--------cCCCcEEEEccCCCCcCHHHHHHH
Confidence 9998642 1122222222110 00 123467889999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.+.
T Consensus 172 l~~~~~ 177 (187)
T 1zj6_A 172 MMSRLK 177 (187)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
No 95
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.62 E-value=3.4e-16 Score=151.52 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=86.5
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCcccccc---chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 276 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~---~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~ 276 (392)
.||+|+....+ + ..++++|||||||++|++ .|.+||++++++|||+|+++ . +.++..+
T Consensus 32 ~~Tig~~~~~v------~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd----------~--~~~~~~~ 92 (331)
T 3r7w_B 32 ESTSNPSLEHF------S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD----------E--YINAITN 92 (331)
T ss_dssp CCCCSCCCEEE------C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS----------C--TTHHHHH
T ss_pred cCeeeeeeEEE------c-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc----------h--HHHHHHH
Confidence 57778766555 3 348999999999999985 46999999999999999863 1 2334444
Q ss_pred HHHHHcC--CCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHH-HHHHhhccCCCCCC
Q 016253 277 FDWVLKQ--PCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKK-FEELYFQSTAPDRV 353 (392)
Q Consensus 277 f~~i~~~--~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~-f~~~~~~~~~~~~~ 353 (392)
|..++.. ...+++|++|++||+|+..+.-+ .+...-+..+ -.++.+ ... .
T Consensus 93 l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R-----------------------~~~~R~V~~~~~~~la~-~~~---~ 145 (331)
T 3r7w_B 93 LAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK-----------------------VDAQRDIMQRTGEELLE-LGL---D 145 (331)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH-----------------------HHHHHHHHHHHHHTTSS-SSC---S
T ss_pred HHHHHHHHhhcCCCCcEEEEEECcccCchhhh-----------------------hhHHHHhhHHHHHHHHh-hcc---c
Confidence 4333211 11247999999999999653110 0000000010 011100 000 0
Q ss_pred CcceeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 354 DRVFKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 354 ~r~~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
...+.+|+|||+| .||.++|..++..|+
T Consensus 146 ~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 146 GVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred ccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 1357889999998 599999999988765
No 96
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.61 E-value=1.3e-14 Score=130.02 Aligned_cols=120 Identities=19% Similarity=0.232 Sum_probs=85.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+.+||++|++.++..|..|+++++++++|+|+++ ..++.+...|+..+... ...+.|+++++|
T Consensus 50 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~i~~v~n 118 (199)
T 2f9l_A 50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVIMLVGN 118 (199)
T ss_dssp TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEE
Confidence 5566789999999999999999999999999999999853 22333334444444322 224689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+- ...+++..++.. ..+.++.|||+|+.+++++|+.
T Consensus 119 K~Dl~~~~~---------------------~~~~~a~~l~~~----------------~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 119 KSDLRHLRA---------------------VPTDEARAFAEK----------------NNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp CTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred CcccccccC---------------------cCHHHHHHHHHH----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 999864311 123344443221 1255667999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+.+.
T Consensus 162 l~~~~~~~ 169 (199)
T 2f9l_A 162 ILTEIYRI 169 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.41 E-value=4.2e-17 Score=146.70 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=81.1
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEeeC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
..+.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 143 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 143 (204)
Confidence 34578899999999999999999999999999999853 33444443 333333221 237899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce-eEEEEEeeCchhHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~-~~~~TsA~d~~nI~~vF~~ 376 (392)
+|+..+......+ .+.. ......+++.+|... ..+ .+++|||+++.||+++|+.
T Consensus 144 ~Dl~~~~~~~~~~------~~~~---~~~v~~~~~~~~~~~----------------~~~~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 144 LDLRDDKDTIEKL------KEKK---LTPITYPQGLAMAKE----------------IGAVKYLECSALTQRGLKTVFDE 198 (204)
Confidence 9997543111000 0000 000112222222111 112 4678999999999999999
Q ss_pred HHHHHH
Q 016253 377 VDETLR 382 (392)
Q Consensus 377 v~~~Il 382 (392)
+.+.++
T Consensus 199 l~~~il 204 (204)
T 3th5_A 199 AIRAVL 204 (204)
Confidence 887653
No 98
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.61 E-value=4e-15 Score=129.86 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=81.7
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
+..+.+|||+|++.++..|..++++++++|+|+|+++- ...++.+.+..+.. .++|++|++||+|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~l~~~~~----~~~p~ilv~nK~D 118 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-----------VMPQTVEAINHAKA----ANVPIIVAINKMD 118 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-----------CCHHHHHHHHHHGG----GSCCEEEEEETTT
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHh----CCCCEEEEEECcc
Confidence 34678999999999999999999999999999997531 12233444444432 3689999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.... .++...++ .... .....-...+.+++|||+++.||+++|+.+.+
T Consensus 119 l~~~~------------------------~~~~~~~~----~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 119 KPEAN------------------------PDRVMQEL----MEYN---LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp SSCSC------------------------HHHHHHHH----TTTT---CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcCC------------------------HHHHHHHH----HhcC---cChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 86421 01111111 0000 00000011256789999999999999999999
Q ss_pred HHHHhhhh
Q 016253 380 TLRRRHLF 387 (392)
Q Consensus 380 ~Il~~~l~ 387 (392)
.+....+.
T Consensus 168 ~~~~~~~~ 175 (178)
T 2lkc_A 168 VSEMEELK 175 (178)
T ss_dssp HHHHTTTT
T ss_pred hhhhhccc
Confidence 88766554
No 99
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.60 E-value=4.8e-15 Score=134.82 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=88.4
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHH-HHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es-~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.++ ..|+..+... ..++|++|++
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~ 138 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDIS----------RPETVDSALKKWRTEILDY--CPSTRVLLIG 138 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT----------CTHHHHHHHTHHHHHHHHH--CTTSEEEEEE
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECc----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556789999999999999999999999999999999985 34455553 3333444332 2479999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce-eEEEEEeeCchh-HHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKL-VKKT 373 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~-~~~~TsA~d~~n-I~~v 373 (392)
||+|+.++.-....+. +.. ......+++.+|.... .+ .+++|||+++.| |+++
T Consensus 139 nK~Dl~~~~~~~~~~~------~~~---~~~v~~~~~~~~~~~~----------------~~~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 139 CKTDLRTDLSTLMELS------HQK---QAPISYEQGCAIAKQL----------------GAEIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp ECGGGGGCHHHHHHHH------HTT---CCCCCHHHHHHHHHHH----------------TCSEEEECCTTTCHHHHHHH
T ss_pred EChhhccchhhhhhhc------ccc---cCccCHHHHHHHHHHc----------------CCCEEEEeccCCCcccHHHH
Confidence 9999976421000000 000 0012345555553321 14 578899999998 9999
Q ss_pred HHHHHHHHHHh
Q 016253 374 FKLVDETLRRR 384 (392)
Q Consensus 374 F~~v~~~Il~~ 384 (392)
|+.+.+.++..
T Consensus 194 f~~l~~~~~~~ 204 (214)
T 3q3j_B 194 FRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999988754
No 100
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.60 E-value=9.1e-15 Score=126.08 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=77.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+.+||++|++.++..|..|+++++++++|+|++ +..++.+...|+..+.......++|++|++|
T Consensus 45 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 45 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT----------DKGSFEKASELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp TTEEEEEEEEECC---------------CCEEEEEEETT----------CHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 567789999999999999999999999999999999984 4456777777888887765556899999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++. ...+++..+... ..+.+++|||+++.||+++|+.
T Consensus 115 K~Dl~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 115 KSDLVRSRE---------------------VSVDEGRACAVV----------------FDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp CTTCCSSCC---------------------SCHHHHHHHHHH----------------TTCEEEECBGGGTBSHHHHHHH
T ss_pred ccccccccc---------------------cCHHHHHHHHHH----------------hCCcEEEeccCCCCCHHHHHHH
Confidence 999865421 122333332211 1256788999999999999999
Q ss_pred HHHHHHHh
Q 016253 377 VDETLRRR 384 (392)
Q Consensus 377 v~~~Il~~ 384 (392)
+.+.+..+
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988653
No 101
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=130.22 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=93.0
Q ss_pred cCCCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccch
Q 016253 185 DANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 264 (392)
Q Consensus 185 ~~~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~ 264 (392)
...|.||..+.+. ....+ +...+.+++|||+|++.++. +..|+++++++|+|+|++
T Consensus 47 ~~~~~~t~~~~~~--------~~~~~------~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~--------- 102 (187)
T 3c5c_A 47 ISEYDPNLEDTYS--------SEETV------DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVD--------- 102 (187)
T ss_dssp CSCCCTTCCEEEE--------EEEEE------TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETT---------
T ss_pred CcccCCCccceee--------EEEEE------CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECC---------
Confidence 3567888765431 12233 55678999999999999988 478999999999999985
Q ss_pred hhhhhHHHHHHHHHHHHcCC--CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHH
Q 016253 265 EQKNRMMETKELFDWVLKQP--CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEE 342 (392)
Q Consensus 265 ~~~nrl~es~~~f~~i~~~~--~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~ 342 (392)
+..++.+...|+..+.... ...++|++|++||+|+..++. ...+++.+|....
T Consensus 103 -~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~---------------------v~~~~~~~~~~~~--- 157 (187)
T 3c5c_A 103 -SRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ---------------------VTKAEGVALAGRF--- 157 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS---------------------SCHHHHHHHHHHH---
T ss_pred -CHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc---------------------cCHHHHHHHHHHc---
Confidence 3445555555655554321 124689999999999864321 2234455543321
Q ss_pred HhhccCCCCCCCcceeEEEEEe-eCchhHHHHHHHHHHHHHH
Q 016253 343 LYFQSTAPDRVDRVFKIYRTTA-LDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 343 ~~~~~~~~~~~~r~~~~~~TsA-~d~~nI~~vF~~v~~~Il~ 383 (392)
.+.+++||| +++.||+++|+.+.+.+.+
T Consensus 158 -------------~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 158 -------------GCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp -------------TCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred -------------CCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 256789999 8999999999999888753
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.57 E-value=4.9e-14 Score=125.73 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=82.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
++..+.+++||++|+++++..|..|+++++++++|+|+++ ..++.+...|+..+... ...+.|+++++|
T Consensus 74 ~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~i~~v~n 142 (191)
T 1oix_A 74 DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVIMLVGN 142 (191)
T ss_dssp TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCcEEEEEE
Confidence 5566788899999999999999999999999999999853 22233333344443321 224689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+...+- ...+.+..+..+ ..+.++.|||+|+.+++++|+.
T Consensus 143 K~Dl~~~~~---------------------~~~~~a~~l~~~----------------~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 143 KSDLRHLRA---------------------VPTDEARAFAEK----------------NGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp CGGGGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECCTTTCTTHHHHHHH
T ss_pred Ccccccccc---------------------cCHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHHH
Confidence 999864311 123344443221 1255667999999999999999
Q ss_pred HHHHH
Q 016253 377 VDETL 381 (392)
Q Consensus 377 v~~~I 381 (392)
+.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 103
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=5.7e-14 Score=124.78 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=88.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++||++|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 62 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 129 (194)
T 2atx_A 62 GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV----------NPASFQNVKEEWVPELKEY--APNVPFLLIG 129 (194)
T ss_dssp SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--STTCCEEEEE
T ss_pred CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 455688999999999999999999999999999999985 334444444 344444332 2378999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..+...... +.+.. ......+++.+|.... . ...+++|||+++.||+++|+
T Consensus 130 nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~--------------~-~~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 130 TQIDLRDDPKTLAR------LNDMK---EKPICVEQGQKLAKEI--------------G-ACCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp ECTTSTTCHHHHHH------HTTTT---CCCCCHHHHHHHHHHH--------------T-CSCEEECCTTTCTTHHHHHH
T ss_pred EChhhcccccchhh------ccccc---CcccCHHHHHHHHHHc--------------C-CcEEEEeeCCCCCCHHHHHH
Confidence 99999764211000 00000 0012345555543321 0 12567899999999999999
Q ss_pred HHHHHHH
Q 016253 376 LVDETLR 382 (392)
Q Consensus 376 ~v~~~Il 382 (392)
.+.+.++
T Consensus 186 ~l~~~i~ 192 (194)
T 2atx_A 186 EAIIAIL 192 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998876
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.54 E-value=5.3e-14 Score=128.94 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=79.2
Q ss_pred cccceeEEecCCcc------cc---ccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 219 SGEVYRLFDVGGQR------NE---RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 219 ~~~~l~i~DvgGq~------~~---r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
....+.+|||+|+. .. ...|..++..++++|||+|+++-... .......++..+... ..+.
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~--------~~~~~~~~~~~l~~~--~~~~ 143 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGL--------TIKEQINLFYSIKSV--FSNK 143 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSS--------CHHHHHHHHHHHHTC--C-CC
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCc--------chHHHHHHHHHHHHh--hcCC
Confidence 45689999999993 31 12345678899999999998642221 123445666666543 3478
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|++|++||+|+...+. + .....+.+.+ +.... ...+.+++|||+++.|
T Consensus 144 piilv~nK~Dl~~~~~----~--------------~~~~~~~~~~-----~~~~~---------~~~~~~~~~SA~~g~g 191 (228)
T 2qu8_A 144 SIVIGFNKIDKCNMDS----L--------------SIDNKLLIKQ-----ILDNV---------KNPIKFSSFSTLTGVG 191 (228)
T ss_dssp CEEEEEECGGGCC--C----C--------------CHHHHHHHHH-----HHHHC---------CSCEEEEECCTTTCTT
T ss_pred cEEEEEeCcccCCchh----h--------------HHHHHHHHHH-----HHHhc---------CCCceEEEEecccCCC
Confidence 9999999999965321 0 0000111112 21110 1125678999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 016253 370 VKKTFKLVDETLRRRH 385 (392)
Q Consensus 370 I~~vF~~v~~~Il~~~ 385 (392)
|+++|+.+.+.+.+..
T Consensus 192 i~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 192 VEQAKITACELLKNDQ 207 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987553
No 105
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.54 E-value=4.7e-14 Score=124.65 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=75.4
Q ss_pred cceeEEecCC----------ccccccchhcccccc---CEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 221 EVYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 221 ~~l~i~DvgG----------q~~~r~~w~~yf~~~---~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
..+.+|||+| ++.++..|..|++++ +++++|+|.++.. .........++...
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~~------- 132 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKSL------- 132 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHHT-------
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHHc-------
Confidence 3678999999 888999999999887 8999999975311 11111222233222
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCc
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDP 367 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~ 367 (392)
++|+++++||+|+..+. ..+...+.+...+.. ...+.++++||+++
T Consensus 133 ~~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~ 178 (195)
T 3pqc_A 133 NIPFTIVLTKMDKVKMS-----------------------ERAKKLEEHRKVFSK-----------YGEYTIIPTSSVTG 178 (195)
T ss_dssp TCCEEEEEECGGGSCGG-----------------------GHHHHHHHHHHHHHS-----------SCCSCEEECCTTTC
T ss_pred CCCEEEEEEChhcCChH-----------------------HHHHHHHHHHHHHhh-----------cCCCceEEEecCCC
Confidence 58999999999986431 112222222222211 12256788999999
Q ss_pred hhHHHHHHHHHHHHH
Q 016253 368 KLVKKTFKLVDETLR 382 (392)
Q Consensus 368 ~nI~~vF~~v~~~Il 382 (392)
.||+++|+.+.+.+.
T Consensus 179 ~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 179 EGISELLDLISTLLK 193 (195)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999988764
No 106
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.53 E-value=9.1e-14 Score=123.17 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=85.4
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
+.+.+|||+|++.++..|..|+++++++|||+|+++ ...+.+...|+..+.... +.|+++++||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~~---~~piilv~NK~D- 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN----------SNTLDRAKTWVNQLKISS---NYIIILVANKID- 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-
Confidence 789999999999999999999999999999999853 334445555666665432 289999999999
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
..++. ...+++.+|+.. ..+.++.|||+++.||+++|+.+.+.
T Consensus 159 ~~~~~---------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 159 KNKFQ---------------------VDILEVQKYAQD----------------NNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp CC-CC---------------------SCHHHHHHHHHH----------------TTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ccccc---------------------CCHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 32210 234455555432 12567889999999999999999998
Q ss_pred HHHh
Q 016253 381 LRRR 384 (392)
Q Consensus 381 Il~~ 384 (392)
+.++
T Consensus 202 ~~~~ 205 (208)
T 3clv_A 202 IYKN 205 (208)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 107
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.53 E-value=2.6e-14 Score=128.92 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=87.1
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHH-HHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~-~~f~~i~~~~~~~~~~iiL~~ 295 (392)
+...+.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+.. .|+..+... ..++|++|++
T Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~ 120 (212)
T 2j0v_A 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLI----------SKASYENVLKKWMPELRRF--APNVPIVLVG 120 (212)
T ss_dssp SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETT----------CHHHHHHHHHTHHHHHHHH--CTTCCEEEEE
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHh--CCCCCEEEEE
Confidence 556689999999999999999999999999999999985 334444544 344444332 2378999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++..... . .+....+++.++.... . ...+++|||+++.||+++|+
T Consensus 121 nK~Dl~~~~~~~~~--------~-----~~~v~~~~~~~~~~~~--------------~-~~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 121 TKLDLRDDKGYLAD--------H-----TNVITSTQGEELRKQI--------------G-AAAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp ECHHHHTCHHHHHT--------C-----SSCCCHHHHHHHHHHH--------------T-CSEEEECCTTTCTTHHHHHH
T ss_pred eCHHhhhCcccccc--------c-----cCCCCHHHHHHHHHHc--------------C-CceEEEccCCCCCCHHHHHH
Confidence 99999764321000 0 0112344454443221 0 13568899999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.++..
T Consensus 173 ~l~~~~~~~ 181 (212)
T 2j0v_A 173 TAIKVVLQP 181 (212)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhh
Confidence 999988743
No 108
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.52 E-value=4.4e-13 Score=117.07 Aligned_cols=124 Identities=11% Similarity=0.030 Sum_probs=84.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+...+.+++|||+||+. ..|+++++++|+|+|+++ ..+...+..+..++..+... ...++|++|++|
T Consensus 50 ~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~-------~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~n 116 (178)
T 2iwr_A 50 DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLED-------ENSFQAVSRLHGQLSSLRGE-GRGGLALALVGT 116 (178)
T ss_dssp TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC-------HHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEE
T ss_pred CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcC-------HHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEE
Confidence 45667899999999986 578999999999999853 12223333344445555432 235789999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..+.-. ....+++.+|.... ..+.+++|||+++.||+++|+.
T Consensus 117 K~Dl~~~~~~-------------------~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 117 QDRISASSPR-------------------VVGDARARALXADM---------------KRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp CTTCBTTBCC-------------------CSCHHHHHHHHHHH---------------SSEEEEEEBTTTTBTHHHHHHH
T ss_pred CccccccccC-------------------cCCHHHHHHHHHhh---------------cCCeEEEEeccccCCHHHHHHH
Confidence 9998532100 02334454443211 1256789999999999999999
Q ss_pred HHHHHHHhhhh
Q 016253 377 VDETLRRRHLF 387 (392)
Q Consensus 377 v~~~Il~~~l~ 387 (392)
+.+.+++..-.
T Consensus 163 l~~~~~~~~~~ 173 (178)
T 2iwr_A 163 VAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99998865443
No 109
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=4.5e-14 Score=128.81 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=88.8
Q ss_pred cccccceeEEecCCccc-cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~-~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
++..+.+.+|||+|++. ++.++..||++++++|+|||++ +..++.....|+..+.......++|++|++
T Consensus 83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt----------~~~sf~~~~~~~~~l~~~~~~~~~piilVg 152 (211)
T 2g3y_A 83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSIT----------DRASFEKASELRIQLRRARQTEDIPIILVG 152 (211)
T ss_dssp TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETT----------CHHHHHHHHHHHHHHHTSGGGTTSCEEEEE
T ss_pred CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECC----------CHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 55667889999999987 6778889999999999999984 455666666676666543223478999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+.+++. ...+++..|... ..+.+++|||++++||+++|+
T Consensus 153 NK~DL~~~r~---------------------v~~~e~~~~a~~----------------~~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 153 NKSDLVRCRE---------------------VSVSEGRACAVV----------------FDCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHHHH----------------HTCEEEECBTTTTBSHHHHHH
T ss_pred EChHHhcCce---------------------EeHHHHHHHHHH----------------cCCEEEEEeCCCCCCHHHHHH
Confidence 9999965321 122333333211 124578899999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.+...
T Consensus 196 ~l~~~i~~~ 204 (211)
T 2g3y_A 196 GIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988643
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.52 E-value=8e-14 Score=123.65 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=75.0
Q ss_pred ceeEEecCC----------ccccccchhcccccc---CEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 222 VYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 222 ~l~i~DvgG----------q~~~r~~w~~yf~~~---~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
.+.+|||+| ++.++..|..|++++ +++++|+|.++-.. ..+ ..++..+.. .+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~-~~~~~~~~~----~~ 134 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS----------NDD-VQMYEFLKY----YG 134 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC----------HHH-HHHHHHHHH----TT
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC----------HHH-HHHHHHHHH----cC
Confidence 689999999 889999999999888 99999999864211 111 112222211 36
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|+++++||+|+..++ .++...+-+.+.+.. ...+.++++||+++.
T Consensus 135 ~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~ 180 (195)
T 1svi_A 135 IPVIVIATKADKIPKG-----------------------KWDKHAKVVRQTLNI-----------DPEDELILFSSETKK 180 (195)
T ss_dssp CCEEEEEECGGGSCGG-----------------------GHHHHHHHHHHHHTC-----------CTTSEEEECCTTTCT
T ss_pred CCEEEEEECcccCChH-----------------------HHHHHHHHHHHHHcc-----------cCCCceEEEEccCCC
Confidence 8999999999986531 112222222222210 123567899999999
Q ss_pred hHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETL 381 (392)
Q Consensus 369 nI~~vF~~v~~~I 381 (392)
||+++|+.+.+.+
T Consensus 181 gv~~l~~~l~~~l 193 (195)
T 1svi_A 181 GKDEAWGAIKKMI 193 (195)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988765
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.51 E-value=4.4e-14 Score=120.96 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=70.6
Q ss_pred ccceeEEecCCccc-------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEE
Q 016253 220 GEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 292 (392)
Q Consensus 220 ~~~l~i~DvgGq~~-------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ii 292 (392)
+..+.+|||+|+.. .+..|..++++++++|+|+|.++-. ... ..++..++.. .++|++
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~---~~~~~~~~~~---~~~p~i 112 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL---------TQA---DYEVAEYLRR---KGKPVI 112 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC---------CHH---HHHHHHHHHH---HTCCEE
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc---------cHh---HHHHHHHHHh---cCCCEE
Confidence 34789999999987 4677888999999999999986421 111 1122222222 368999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcce-eEEEEEeeCchhHH
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALDPKLVK 371 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~-~~~~TsA~d~~nI~ 371 (392)
+++||+|+.+++.. ..++ ... .+ .++++||+++.||+
T Consensus 113 lv~nK~Dl~~~~~~---------~~~~---------------------~~~------------~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 113 LVATKVDDPKHELY---------LGPL---------------------YGL------------GFGDPIPTSSEHARGLE 150 (161)
T ss_dssp EEEECCCSGGGGGG---------CGGG---------------------GGG------------SSCSCEECBTTTTBSHH
T ss_pred EEEECcccccchHh---------HHHH---------------------HhC------------CCCCeEEEecccCCChH
Confidence 99999999754210 0011 000 01 35789999999999
Q ss_pred HHHHHHHHHH
Q 016253 372 KTFKLVDETL 381 (392)
Q Consensus 372 ~vF~~v~~~I 381 (392)
++|+.+.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987653
No 112
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.49 E-value=2.4e-13 Score=121.41 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=84.3
Q ss_pred ccccceeEEecCCccccccc-h--hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEE
Q 016253 218 KSGEVYRLFDVGGQRNERRK-W--IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 294 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~-w--~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~ 294 (392)
...+.+++|||+||+.++.. | ..||++++++|||+|+++ ...+.+.....|+..+... ..++|++|+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--------~~~~~~~~~~~~l~~~~~~--~~~~piilv 135 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD--------DYMEALTRLHITVSKAYKV--NPDMNFEVF 135 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS--------CCHHHHHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC--------chHHHHHHHHHHHHHHHhc--CCCCcEEEE
Confidence 56789999999999998665 5 899999999999999863 1224444555556555322 347999999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+..+.... .............+.... . ....+.+++|||++ .||+++|
T Consensus 136 ~nK~Dl~~~~~~~-------------------~~~~~v~~~~~~~~~~~~----~---~~~~~~~~e~Sa~~-~~v~~~f 188 (196)
T 3llu_A 136 IHKVDGLSDDHKI-------------------ETQRDIHQRANDDLADAG----L---EKLHLSFYLTSIYD-HSIFEAF 188 (196)
T ss_dssp EECGGGSCHHHHH-------------------HHHHHHHHHHHHHHHHTT----C---TTSCEEEEEECTTS-THHHHHH
T ss_pred EeccccCchhhhh-------------------HHHhHHHHHHHHHHHHhh----h---hcCCcceEEEEech-hhHHHHH
Confidence 9999987532100 001111111222222211 0 12347788999999 9999999
Q ss_pred HHHHHHH
Q 016253 375 KLVDETL 381 (392)
Q Consensus 375 ~~v~~~I 381 (392)
..+.+.|
T Consensus 189 ~~l~~~l 195 (196)
T 3llu_A 189 SKVVQKL 195 (196)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988765
No 113
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.46 E-value=2.7e-13 Score=121.05 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=84.4
Q ss_pred cccccceeEEecCCccc-cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~-~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~ 295 (392)
++..+.+.+|||+|++. ++.++..|+++++++|+|+|++ +..++.....|+..+.......++|++|++
T Consensus 52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~~~~~~~~l~~~~~~~~~piilV~ 121 (192)
T 2cjw_A 52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSIT----------DRASFEKASELRIQLRRARQTEDIPIILVG 121 (192)
T ss_dssp TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETT----------CHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 55667889999999987 6788999999999999999985 445555555565555443223468999999
Q ss_pred eCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 296 NKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 296 NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
||+|+..++. ...+++..|... ..+.+++|||+++.||+++|+
T Consensus 122 NK~Dl~~~r~---------------------v~~~~~~~~a~~----------------~~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 122 NKSDLVRXRE---------------------VSVSEGRAXAVV----------------FDXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp ECTTCGGGCC---------------------SCHHHHHHHHHH----------------TTCEEEECBTTTTBSHHHHHH
T ss_pred echhhhcccc---------------------ccHHHHHHHHHH----------------hCCceEEeccccCCCHHHHHH
Confidence 9999864321 112333332110 114567899999999999999
Q ss_pred HHHHHHHHh
Q 016253 376 LVDETLRRR 384 (392)
Q Consensus 376 ~v~~~Il~~ 384 (392)
.+.+.+...
T Consensus 165 ~l~~~~~~~ 173 (192)
T 2cjw_A 165 GIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988643
No 114
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.45 E-value=4.2e-13 Score=121.50 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=82.4
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
..+.+.+|||+|++.++..|..|+++++++|+|+|+++- .+...+.+++..+..... .+.|++|++||+
T Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~----~~~piilv~nK~ 127 (218)
T 4djt_A 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR-------ITCQNLARWVKEFQAVVG----NEAPIVVCANKI 127 (218)
T ss_dssp CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHHC----SSSCEEEEEECT
T ss_pred cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhcC----CCCCEEEEEECC
Confidence 337899999999999999999999999999999998632 222333344444444332 358999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.+++. ...+.+..+. ....+.++++||+++.||+++|+.+.
T Consensus 128 Dl~~~~~---------------------~~~~~~~~~~----------------~~~~~~~~~~Sa~~g~gv~~l~~~l~ 170 (218)
T 4djt_A 128 DIKNRQK---------------------ISKKLVMEVL----------------KGKNYEYFEISAKTAHNFGLPFLHLA 170 (218)
T ss_dssp TCC-------------------------CCHHHHHHHT----------------TTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred CCccccc---------------------cCHHHHHHHH----------------HHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 9865311 1112222221 02235688999999999999999999
Q ss_pred HHHHHh
Q 016253 379 ETLRRR 384 (392)
Q Consensus 379 ~~Il~~ 384 (392)
+.+...
T Consensus 171 ~~~~~~ 176 (218)
T 4djt_A 171 RIFTGR 176 (218)
T ss_dssp HHHHCC
T ss_pred HHHhcc
Confidence 988643
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.44 E-value=3.2e-13 Score=139.64 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=76.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+.+.+.+||++||+.++..+..|+++++++|+|+|++++ +++..++..+.... .+.|++|++|
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~-----~~~pvilV~N 158 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYG-----GKSPVIVVMN 158 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHS-----SSCCEEEEEC
T ss_pred CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhC-----CCCCEEEEEE
Confidence 34568899999999999999999999999999999998642 33333333333331 2689999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+|+..++- ...+++.++ +. ...+.++.|||+++.||+++|+.
T Consensus 159 K~Dl~~~~~---------------------v~~~~~~~~----~~------------~~~~~~~~vSA~~g~gi~eL~~~ 201 (535)
T 3dpu_A 159 KIDENPSYN---------------------IEQKKINER----FP------------AIENRFHRISCKNGDGVESIAKS 201 (535)
T ss_dssp CTTTCTTCC---------------------CCHHHHHHH----CG------------GGTTCEEECCC-----CTTHHHH
T ss_pred CCCcccccc---------------------cCHHHHHHH----HH------------hcCCceEEEecCcccCHHHHHHH
Confidence 999865321 112222221 11 11234688999999999999999
Q ss_pred HHHHHHH
Q 016253 377 VDETLRR 383 (392)
Q Consensus 377 v~~~Il~ 383 (392)
+.+.+..
T Consensus 202 l~~~~~~ 208 (535)
T 3dpu_A 202 LKSAVLH 208 (535)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9988754
No 116
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.42 E-value=8.7e-14 Score=126.02 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=57.4
Q ss_pred cceeEEecCCccccccchhccccc----cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC---CCCCceEEE
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFML 293 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~----~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~---~~~~~~iiL 293 (392)
..+.+|||+|++.++..|..|+++ ++++|||+|.+ .+..++.+...++..+.... ...++|++|
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 125 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDILI 125 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT---------SCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECC---------CChHHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence 478999999999999999999998 89999999985 12344455556666665432 224789999
Q ss_pred EeeCCCCccc
Q 016253 294 FLNKFDIFEK 303 (392)
Q Consensus 294 ~~NK~Dl~~~ 303 (392)
++||+|+..+
T Consensus 126 v~nK~Dl~~~ 135 (218)
T 1nrj_B 126 ACNKSELFTA 135 (218)
T ss_dssp EEECTTSTTC
T ss_pred EEEchHhccc
Confidence 9999999764
No 117
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.42 E-value=6.7e-14 Score=126.37 Aligned_cols=112 Identities=10% Similarity=0.051 Sum_probs=71.1
Q ss_pred ecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHH---HHHHcCCC-CCCceEEEEeeCC-CCc
Q 016253 227 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF---DWVLKQPC-FEKTSFMLFLNKF-DIF 301 (392)
Q Consensus 227 DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f---~~i~~~~~-~~~~~iiL~~NK~-Dl~ 301 (392)
|+|||++.|+.|.+||++++++|||||.++ ..|++ +.+.+ ..++++.. +.++|+++|+||+ |+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 689999999999999999999999999753 33432 55555 45565553 5789999999995 775
Q ss_pred cccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 302 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 302 ~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
.+ + ...+..+.+ .+.. -+|.+++.-|||++|+++.+.++++.+.+
T Consensus 177 ~A-m----------------------s~~EI~e~L-----~L~~-------l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 177 KR-M----------------------PCFYLAHEL-----HLNL-------LNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp CB-C----------------------CHHHHHHHT-----TGGG-------GCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CC-C----------------------CHHHHHHHc-----CCcC-------CCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 43 1 112222211 1110 13678999999999999999999988776
Q ss_pred HHh
Q 016253 382 RRR 384 (392)
Q Consensus 382 l~~ 384 (392)
.++
T Consensus 222 ~~k 224 (227)
T 3l82_B 222 ESK 224 (227)
T ss_dssp TTC
T ss_pred Hhh
Confidence 543
No 118
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.42 E-value=4.3e-13 Score=118.53 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=80.0
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
+.+.+++|||+||+.++..|..|+++++++++|+|+++ ...++.....|+..+... ..++|++|++||+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~---------~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~ 122 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK---------GQAEVDAMKPWLFNIKAR--ASSSPVILVGTHL 122 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG---------CHHHHHTHHHHHHHHHHH--CTTCEEEEEEECG
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc---------chhHHHHHHHHHHHHHhh--CCCCcEEEEEECC
Confidence 56789999999999999999999999999999999853 112333344455555432 1368999999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch-hHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK-LVKKTFKLV 377 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~-nI~~vF~~v 377 (392)
|+.+++.. .+...-....+... . . ......+++|||+++. +++.+|+.+
T Consensus 123 Dl~~~~~~-----------------------~~~~~~~~~~~~~~---~-~---~~~~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 123 DVSDEKQR-----------------------KACMSKITKELLNK---R-G---FPAIRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp GGCCHHHH-----------------------HHHHHHHHHHTTTC---T-T---SCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred Ccccchhh-----------------------HHHHHHHHHHHHHh---c-C---CcchhheEEEecccCchhHHHHHHHH
Confidence 98654210 00000011111100 0 0 0111237889999995 999999998
Q ss_pred HHHHHH
Q 016253 378 DETLRR 383 (392)
Q Consensus 378 ~~~Il~ 383 (392)
.+.+.+
T Consensus 173 ~~~~~~ 178 (184)
T 2zej_A 173 INESLN 178 (184)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 887754
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.41 E-value=8e-13 Score=119.93 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=78.2
Q ss_pred ccccceeEEecCC----------ccccccchhccccc---cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC
Q 016253 218 KSGEVYRLFDVGG----------QRNERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (392)
Q Consensus 218 ~~~~~l~i~DvgG----------q~~~r~~w~~yf~~---~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~ 284 (392)
..+..+.+|||+| ++.++..+..|+++ ++++|||+|.++-- . .....++..+..
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--------~---~~~~~~~~~l~~-- 142 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL--------T---ELDRRMIEWFAP-- 142 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------C---HHHHHHHHHHGG--
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC--------C---HHHHHHHHHHHh--
Confidence 3456899999999 55667788888887 67799999975310 1 111223333322
Q ss_pred CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEe
Q 016253 285 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 364 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA 364 (392)
.+.|+++++||+|+.... ...+..+.+.+.+....... ....+.++.+||
T Consensus 143 --~~~p~i~v~nK~Dl~~~~-----------------------~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~SA 192 (223)
T 4dhe_A 143 --TGKPIHSLLTKCDKLTRQ-----------------------ESINALRATQKSLDAYRDAG-----YAGKLTVQLFSA 192 (223)
T ss_dssp --GCCCEEEEEECGGGSCHH-----------------------HHHHHHHHHHHHHHHHHHHT-----CCSCEEEEEEBT
T ss_pred --cCCCEEEEEeccccCChh-----------------------hHHHHHHHHHHHHHhhhhcc-----cCCCCeEEEeec
Confidence 368999999999986431 12222233333333221000 012366788999
Q ss_pred eCchhHHHHHHHHHHHHHH
Q 016253 365 LDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 365 ~d~~nI~~vF~~v~~~Il~ 383 (392)
+++.||+++|+.+.+.+..
T Consensus 193 ~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 193 LKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TTTBSHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHhcCc
Confidence 9999999999999988754
No 120
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=125.80 Aligned_cols=120 Identities=12% Similarity=0.088 Sum_probs=80.0
Q ss_pred cccccceeEEe-----------------------cCCccccccchhcccc---------------------ccCEEEEEE
Q 016253 217 KKSGEVYRLFD-----------------------VGGQRNERRKWIHLFE---------------------GVSAVIFCA 252 (392)
Q Consensus 217 ~~~~~~l~i~D-----------------------vgGq~~~r~~w~~yf~---------------------~~~~iifv~ 252 (392)
+...+.++||| ++||++++.+|..||+ +++++|+|+
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 45678999999 9999999999999999 899999999
Q ss_pred EcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHH
Q 016253 253 AISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA 332 (392)
Q Consensus 253 dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~ 332 (392)
|+++- ...++.....|+..+.......++|++|++||+|+..++ .++++
T Consensus 171 D~t~~--------~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-----------------------~v~~~ 219 (255)
T 3c5h_A 171 DVSRG--------MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-----------------------YIRDA 219 (255)
T ss_dssp ECBC------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-----------------------HHHHH
T ss_pred ECCCC--------chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-----------------------HHHHH
Confidence 98531 003444444555554432112368999999999985321 12233
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 333 YEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 333 ~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
.++... ...+.+++|||+++.||+++|+.+.+.+.
T Consensus 220 ~~~~~~---------------~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 220 HTFALS---------------KKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHT---------------SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHh---------------cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 332110 11256788999999999999999987663
No 121
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.6e-12 Score=113.71 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=58.1
Q ss_pred cceeEEecCCccccccchhccccc----cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC---CCCCceEEE
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFML 293 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~----~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~---~~~~~~iiL 293 (392)
+.+.+|||+|++.++..|..|+.+ ++++|||+|++ .+..++.+...++..+.... ...++|++|
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 161 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDILI 161 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETT---------CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECC---------CCchhHHHHHHHHHHHHhhhhhccccCCCEEE
Confidence 468899999999999999999987 89999999974 14455666666776665432 224689999
Q ss_pred EeeCCCCccc
Q 016253 294 FLNKFDIFEK 303 (392)
Q Consensus 294 ~~NK~Dl~~~ 303 (392)
++||+|+..+
T Consensus 162 v~nK~Dl~~~ 171 (193)
T 2ged_A 162 ACNKSELFTA 171 (193)
T ss_dssp EEECTTSTTC
T ss_pred EEEchHhcCC
Confidence 9999998653
No 122
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.28 E-value=6e-12 Score=120.83 Aligned_cols=106 Identities=11% Similarity=0.139 Sum_probs=73.2
Q ss_pred ceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCc
Q 016253 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIF 301 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~ 301 (392)
++++||| |++++.+|..||++++++|+|+|+++.+. +.+.+..++ ..+-. .++|++|++||+||.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~------s~~~l~~~l---~~~~~----~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET------STYIIDKFL---VLAEK----NELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC------CHHHHHHHH---HHHHH----TTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC------CHHHHHHHH---HHHHH----CCCCEEEEEeHHHcC
Confidence 7899999 99999999999999999999999864211 122333333 22222 368999999999985
Q ss_pred cccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 302 EKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 302 ~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
.++ .++++.+|+.. +. .. +.+++|||+++.||+++|..+..
T Consensus 129 ~~~-----------------------~v~~~~~~~~~-~~------------~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 129 DED-----------------------DLRKVRELEEI-YS------------GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CHH-----------------------HHHHHHHHHHH-HT------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred Cch-----------------------hHHHHHHHHHH-Hh------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 431 12233333321 11 12 45778999999999999987653
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.28 E-value=5.8e-12 Score=118.80 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=75.9
Q ss_pred cccccceeEEecCCcccccc------chhccc--cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERR------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~------~w~~yf--~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
...+..+.+|||+|+..+.. .+..|+ .+++++|+|+|.+.. ...+.++..+... ..
T Consensus 46 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~-------------~~~~~~~~~~~~~---~~ 109 (271)
T 3k53_A 46 EYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL-------------MRNLFLTLELFEM---EV 109 (271)
T ss_dssp EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHHT---TC
T ss_pred EECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc-------------hhhHHHHHHHHhc---CC
Confidence 33455799999999999888 788888 789999999997531 2345555555543 23
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|+++++||+|+.+.+-.. .+. +-+.+.+ .+.++.|||+++.
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~-------------------~~~----~~l~~~l---------------g~~~~~~Sa~~g~ 151 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAK-------------------IDI----KKMRKEL---------------GVPVIPTNAKKGE 151 (271)
T ss_dssp CSEEEEEECHHHHHHHTCC-------------------CCH----HHHHHHH---------------SSCEEECBGGGTB
T ss_pred CCEEEEEEChhcCcccccH-------------------HHH----HHHHHHc---------------CCcEEEEEeCCCC
Confidence 8999999999986532110 111 1111111 1345678888888
Q ss_pred hHHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETLR 382 (392)
Q Consensus 369 nI~~vF~~v~~~Il 382 (392)
||+++|+.+.+.+-
T Consensus 152 gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 152 GVEELKRMIALMAE 165 (271)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888877653
No 124
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=123.68 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=73.1
Q ss_pred ecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH---HHHcCCC-CCCceEEEEeeC-CCCc
Q 016253 227 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD---WVLKQPC-FEKTSFMLFLNK-FDIF 301 (392)
Q Consensus 227 DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~---~i~~~~~-~~~~~iiL~~NK-~Dl~ 301 (392)
|+|||++.|+.|.+||++++++|||||.+ +..|+. +.+.+. .++++.. +.++|+++|+|| +|+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSs----------DreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAE----------AHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCB----------TTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCC----------cHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 57999999999999999999999999975 344443 444333 4555432 578999999997 6886
Q ss_pred cc--------cccccCccccccccccccCCCCcccHHHHHHHHHHHH
Q 016253 302 EK--------KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 340 (392)
Q Consensus 302 ~~--------kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f 340 (392)
.+ ++.-..+ ...|..+-+++.+| .++.++++|+.+..
T Consensus 262 ~Ams~~EI~e~L~L~~l-~r~W~Iq~csA~tG-eGL~EGldWL~~~l 306 (312)
T 3l2o_B 262 KRMPCFYLAHELHLNLL-NHPWLVQDTEAETL-TGFLNGIEWILEEV 306 (312)
T ss_dssp CBCCHHHHHHHTTGGGG-CSCEEEEEEETTTC-TTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHcCCccC-CCcEEEEecccCCC-cCHHHHHHHHHHHH
Confidence 54 1222223 36899999999999 89999999998764
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.26 E-value=6e-11 Score=120.78 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=64.6
Q ss_pred ccccceeEEecCCccccccch--------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w--------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
..++.+.+|||+|++.++..| ..++++++++|+|+|.++... .+.+.+...++..+ .+.
T Consensus 278 ~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l------~~~ 344 (476)
T 3gee_A 278 HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAH------PAA 344 (476)
T ss_dssp ETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHC------TTS
T ss_pred ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhc------CCC
Confidence 345679999999998877554 558999999999999875322 12233444444443 268
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+..... .+. + .+.+.. ...++.|||++++|
T Consensus 345 piIvV~NK~Dl~~~~~-----------------------~~~--~----~l~~~~-----------~~~~i~vSAktg~G 384 (476)
T 3gee_A 345 KFLTVANKLDRAANAD-----------------------ALI--R----AIADGT-----------GTEVIGISALNGDG 384 (476)
T ss_dssp EEEEEEECTTSCTTTH-----------------------HHH--H----HHHHHH-----------TSCEEECBTTTTBS
T ss_pred CEEEEEECcCCCCccc-----------------------hhH--H----HHHhcC-----------CCceEEEEECCCCC
Confidence 9999999999864311 110 1 111110 02356788888888
Q ss_pred HHHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETLR 382 (392)
Q Consensus 370 I~~vF~~v~~~Il 382 (392)
|+++|+.+.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 126
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.24 E-value=1.8e-11 Score=117.67 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=81.7
Q ss_pred cccceeEEecCCcccc-----ccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEE
Q 016253 219 SGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 293 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~-----r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL 293 (392)
+++.+++|||+||+.+ +..|..||++++++|+|+|+++- .+.+.+..+..++..+... ..++|++|
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~-------~s~~~l~~~~~~l~~l~~~--~~~~piil 120 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST-------EVLKDIEIFAKALKQLRKY--SPDAKIFV 120 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS-------CHHHHHHHHHHHHHHHHHH--CTTCEEEE
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh-------hhHHHHHHHHHHHHHHHHh--CCCCeEEE
Confidence 3689999999999999 88999999999999999998632 1223333444455555432 34699999
Q ss_pred EeeCCCCccc--cccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHH
Q 016253 294 FLNKFDIFEK--KVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 371 (392)
Q Consensus 294 ~~NK~Dl~~~--kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~ 371 (392)
++||+|+..+ +... + ....+++.++. .. ... ..+.++.|||++ .++.
T Consensus 121 v~NK~Dl~~~~~r~~~--------~---------~v~~~~~~~~~-----~~---~g~-----~~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 121 LLHKMDLVQLDKREEL--------F---------QIMMKNLSETS-----SE---FGF-----PNLIGFPTSIWD-ESLY 169 (307)
T ss_dssp EEECGGGSCHHHHHHH--------H---------HHHHHHHHHHH-----HT---TTC-----CSCEEEECCTTS-SHHH
T ss_pred EEecccccchhhhhHH--------H---------HHHHHHHHHHH-----HH---cCC-----CCeEEEEeeecC-ChHH
Confidence 9999998752 1100 0 00112222221 10 000 026788999999 8999
Q ss_pred HHHHHHHHHHH
Q 016253 372 KTFKLVDETLR 382 (392)
Q Consensus 372 ~vF~~v~~~Il 382 (392)
++|..+...++
T Consensus 170 e~~~~iv~~li 180 (307)
T 3r7w_A 170 KAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHc
Confidence 99988876553
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.22 E-value=1.8e-10 Score=113.07 Aligned_cols=116 Identities=21% Similarity=0.226 Sum_probs=76.0
Q ss_pred cccceeEEecCCccccc---------cchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 219 SGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r---------~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
.+..+.+|||+|+.... .....+...++++++|+|++... .-.+.+...++..+.... .+.
T Consensus 212 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~--------~~~~~~~~~~~~~i~~~~--~~~ 281 (357)
T 2e87_A 212 GYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC--------GFPLEEQIHLFEEVHGEF--KDL 281 (357)
T ss_dssp TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT--------SSCHHHHHHHHHHHHHHT--TTS
T ss_pred cCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc--------cCCHHHHHHHHHHHHHhc--CCC
Confidence 35678999999986532 12234556799999999985321 113344455666555421 268
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+... ..++++.+++.. ..+.++++||++++|
T Consensus 282 piilV~NK~Dl~~~-----------------------~~~~~~~~~~~~----------------~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 282 PFLVVINKIDVADE-----------------------ENIKRLEKFVKE----------------KGLNPIKISALKGTG 322 (357)
T ss_dssp CEEEEECCTTTCCH-----------------------HHHHHHHHHHHH----------------TTCCCEECBTTTTBT
T ss_pred CEEEEEECcccCCh-----------------------HHHHHHHHHHHh----------------cCCCeEEEeCCCCcC
Confidence 99999999998542 122333333221 013457899999999
Q ss_pred HHHHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETLRR 383 (392)
Q Consensus 370 I~~vF~~v~~~Il~ 383 (392)
|+++|+.+.+.+..
T Consensus 323 i~~l~~~i~~~l~~ 336 (357)
T 2e87_A 323 IDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 128
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.20 E-value=2.2e-10 Score=115.54 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=80.1
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+.+....| ...+..+.+|||+|++.|.+.+..+++.++++|+|+|.++-.. + ...+......+.+..
T Consensus 80 GiTid~~~~~~------~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e-~~~~~~~qt~e~l~~ 149 (439)
T 3j2k_7 80 GKTVEVGRAYF------ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---E-TGFEKGGQTREHAML 149 (439)
T ss_pred CceEEEeEEEE------ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---c-cccCCCchHHHHHHH
Confidence 44555555666 5566789999999999999999999999999999999853210 0 000000112222222
Q ss_pred HHcCCCCCCce-EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCccee
Q 016253 280 VLKQPCFEKTS-FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFK 358 (392)
Q Consensus 280 i~~~~~~~~~~-iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~ 358 (392)
+.. .++| +++++||+|+..... .....++..+-+...+..+. -. ....+.
T Consensus 150 ~~~----~~v~~iIvviNK~Dl~~~~~-------------------~~~~~~~i~~~~~~~l~~~g----~~--~~~~~~ 200 (439)
T 3j2k_7 150 AKT----AGVKHLIVLINKMDDPTVNW-------------------SNERYEECKEKLVPFLKKVG----FN--PKKDIH 200 (439)
T ss_pred HHH----cCCCeEEEEeecCCCcccch-------------------HHHHHHHHHHHHHHHHHHhc----cc--ccCCee
Confidence 211 1355 999999999853210 00112222222222222211 00 112366
Q ss_pred EEEEEeeCchhHHHHHH
Q 016253 359 IYRTTALDPKLVKKTFK 375 (392)
Q Consensus 359 ~~~TsA~d~~nI~~vF~ 375 (392)
++.+||++|.||.++++
T Consensus 201 ~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 201 FMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEeeccCCcccccccc
Confidence 78899999999998654
No 129
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.19 E-value=2.2e-10 Score=116.73 Aligned_cols=108 Identities=18% Similarity=0.309 Sum_probs=72.4
Q ss_pred cccceeEEecCCcc-ccc--------cchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 219 SGEVYRLFDVGGQR-NER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 219 ~~~~l~i~DvgGq~-~~r--------~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
.+..+.+|||+|++ .+. ..+..++++++++|+|+|.++-.. . +..++++.+ .+.
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s----------~-~~~~il~~l------~~~ 351 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD----------E-EDRKILERI------KNK 351 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC----------H-HHHHHHHHH------TTS
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC----------H-HHHHHHHHh------cCC
Confidence 35678999999998 543 235678999999999999864321 1 112333332 267
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|+++++||+|+..+ + +.++..++ . ...+.++.+||++++|
T Consensus 352 piivV~NK~DL~~~-~----------------------~~~~~~~~--------~---------~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 352 RYLVVINKVDVVEK-I----------------------NEEEIKNK--------L---------GTDRHMVKISALKGEG 391 (482)
T ss_dssp SEEEEEEECSSCCC-C----------------------CHHHHHHH--------H---------TCSTTEEEEEGGGTCC
T ss_pred CEEEEEECcccccc-c----------------------CHHHHHHH--------h---------cCCCcEEEEECCCCCC
Confidence 99999999998532 1 11222221 0 0113357899999999
Q ss_pred HHHHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETLRR 383 (392)
Q Consensus 370 I~~vF~~v~~~Il~ 383 (392)
|+++|+.+.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987663
No 130
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.17 E-value=3.4e-11 Score=104.34 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=73.2
Q ss_pred cccceeEEecCCccccc------cchhcccc--ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 219 SGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r------~~w~~yf~--~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
.+..+++|||+||+.++ .++..|++ +++++++|+|.+++ +++ ..|+..+.. .++|
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~---~~~~~~~~~----~~~p 110 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERN---LYLTLQLME----MGAN 110 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHH---HHHHHHHHH----TTCC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHh---HHHHHHHHh----cCCC
Confidence 34689999999999886 44577886 89999999998532 122 234444433 2689
Q ss_pred EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhH
Q 016253 291 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 370 (392)
Q Consensus 291 iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI 370 (392)
+++++||+|+..++.. . . ++.++ .+.+ .+.+++|||++++||
T Consensus 111 ~ilv~nK~Dl~~~~~~--~-----------------~---~~~~~-~~~~---------------~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 111 LLLALNKMDLAKSLGI--E-----------------I---DVDKL-EKIL---------------GVKVVPLSAAKKMGI 152 (165)
T ss_dssp EEEEEECHHHHHHTTC--C-----------------C---CHHHH-HHHH---------------TSCEEECBGGGTBSH
T ss_pred EEEEEEchHhccccCh--h-----------------h---HHHHH-HHHh---------------CCCEEEEEcCCCCCH
Confidence 9999999998643210 0 0 01111 1111 134678999999999
Q ss_pred HHHHHHHHHHH
Q 016253 371 KKTFKLVDETL 381 (392)
Q Consensus 371 ~~vF~~v~~~I 381 (392)
+++|+.+.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 131
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.17 E-value=9.3e-11 Score=115.74 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=74.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE-EEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF-MLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i-iL~~ 295 (392)
...+..+.+|||+|++.|.+.+..+++.++++|+|+| ++- .+.+..+++..+.. .++|. ++++
T Consensus 56 ~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-----------~~~qt~e~~~~~~~----~~i~~~ivvv 119 (370)
T 2elf_A 56 DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-----------LDAHTGECIIALDL----LGFKHGIIAL 119 (370)
T ss_dssp CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-----------CCHHHHHHHHHHHH----TTCCEEEEEE
T ss_pred ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-----------CcHHHHHHHHHHHH----cCCCeEEEEE
Confidence 4455679999999999999999999999999999999 521 11122233322221 14566 8889
Q ss_pred e-CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEE--EEeeC---chh
Q 016253 296 N-KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALD---PKL 369 (392)
Q Consensus 296 N-K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~--TsA~d---~~n 369 (392)
| |+|+ .+.... ...++..++ .+... ...+.++. +||++ ++|
T Consensus 120 NNK~Dl-~~~~~~-------------------~~~~~i~~~--------l~~~~-----~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 120 TRSDST-HMHAID-------------------ELKAKLKVI--------TSGTV-----LQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp CCGGGS-CHHHHH-------------------HHHHHHHHH--------TTTST-----TTTCEEEECCCCTTSSSTTTT
T ss_pred EeccCC-CHHHHH-------------------HHHHHHHHH--------HHhcC-----CCceEEEecccccccCcCCCC
Confidence 9 9998 431100 001122222 11000 12356788 99999 999
Q ss_pred HHHHHHHHHHHHH
Q 016253 370 VKKTFKLVDETLR 382 (392)
Q Consensus 370 I~~vF~~v~~~Il 382 (392)
|+++|+.+.+.+-
T Consensus 167 i~~L~~~l~~~~~ 179 (370)
T 2elf_A 167 VDELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999998887653
No 132
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.16 E-value=7.1e-11 Score=120.59 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=80.4
Q ss_pred eeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHH
Q 016253 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280 (392)
Q Consensus 201 ~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i 280 (392)
.|+.+....| +..+..+.||||+|++.+.+.+..++++++++|+|+|.++-+.. ...+.......... +
T Consensus 97 iTi~~~~~~~------~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~----~~~~~~~qt~e~~~-~ 165 (483)
T 3p26_A 97 VTVSICTSHF------STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFE----SGFDLDGQTKEHML-L 165 (483)
T ss_dssp SSCCCCEEEE------ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHH-H
T ss_pred cceEeeeEEE------ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccc----cccchhhhHHHHHH-H
Confidence 3444445556 56678999999999999999999999999999999998642100 00000011111111 1
Q ss_pred HcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEE
Q 016253 281 LKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIY 360 (392)
Q Consensus 281 ~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~ 360 (392)
+.. ....|++|++||+|+.+.. ....++..+.+...+..+. . ....+.++
T Consensus 166 ~~~--~~~~~iIvviNK~Dl~~~~---------------------~~~~~~i~~~~~~~l~~~g----~---~~~~~~~i 215 (483)
T 3p26_A 166 ASS--LGIHNLIIAMNKMDNVDWS---------------------QQRFEEIKSKLLPYLVDIG----F---FEDNINWV 215 (483)
T ss_dssp HHH--TTCCCEEEEEECGGGGTTC---------------------HHHHHHHHHHHHHHHHHHT----C---CGGGEEEE
T ss_pred HHH--cCCCcEEEEEECcCcccch---------------------HHHHHHHHHHHHHHHHHcC----C---CcccceEE
Confidence 111 1224799999999986421 0234445555555444331 0 12246778
Q ss_pred EEEeeCchhHHH
Q 016253 361 RTTALDPKLVKK 372 (392)
Q Consensus 361 ~TsA~d~~nI~~ 372 (392)
.+||+++.||.+
T Consensus 216 ~iSA~~g~gi~e 227 (483)
T 3p26_A 216 PISGFSGEGVYK 227 (483)
T ss_dssp ECCSSSCTTSSS
T ss_pred EEeeecCCCccc
Confidence 899999999975
No 133
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.15 E-value=2.8e-10 Score=104.84 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=49.8
Q ss_pred cccceeEEecCC-----------ccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGG-----------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgG-----------q~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.+|||+| ++.+++.+..++++++++|+|+|++.++. ..... +.++...+... .
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-----~~~~~----l~~~~~~~~~~--~ 144 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-----EEHKA----TEKILKMFGER--A 144 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-----HHHHH----HHHHHHHHHHH--H
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-----HHHHH----HHHHHHHhhhh--c
Confidence 345789999999 55677778888999999999999875433 12222 33333332211 1
Q ss_pred CceEEEEeeCCCCccc
Q 016253 288 KTSFMLFLNKFDIFEK 303 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~ 303 (392)
..|++|++||+|+...
T Consensus 145 ~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 145 RSFMILIFTRKDDLGD 160 (239)
T ss_dssp GGGEEEEEECGGGC--
T ss_pred cceEEEEEeCCccCCc
Confidence 2589999999998754
No 134
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.10 E-value=3e-11 Score=106.11 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=71.2
Q ss_pred ceeEEecCC-----------ccccccchhccccc-cCEEEEEEEcc---cccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 222 VYRLFDVGG-----------QRNERRKWIHLFEG-VSAVIFCAAIS---EYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 222 ~l~i~DvgG-----------q~~~r~~w~~yf~~-~~~iifv~dls---~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
.+.+|||+| |+.++..|..|+++ ++++++|+++. .++.....-.....+.....++..+..
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---- 120 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---- 120 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh----
Confidence 789999999 88899999999987 66555444443 221110000000000001112222222
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.++|+++++||+|+..++ .+.+.+ +.+.+..-+ ......+++|||++
T Consensus 121 ~~~piilv~nK~Dl~~~~------------------------~~~~~~-~~~~~~~~~--------~~~~~~~~~~Sa~~ 167 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNV------------------------QEVINF-LAEKFEVPL--------SEIDKVFIPISAKF 167 (190)
T ss_dssp TTCCEEEEEECGGGCSCH------------------------HHHHHH-HHHHHTCCG--------GGHHHHEEECCTTT
T ss_pred cCCceEEEeehHhccCcH------------------------HHHHHH-HHHHhhhhh--------hccCCcEEEEecCC
Confidence 368999999999986532 011111 222211000 00013467899999
Q ss_pred chhHHHHHHHHHHHHHHh
Q 016253 367 PKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~~ 384 (392)
+.||+++|+.+.+.+...
T Consensus 168 ~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 168 GDNIERLKNRIFEVIRER 185 (190)
T ss_dssp CTTHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcchh
Confidence 999999999999988654
No 135
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.10 E-value=8.6e-11 Score=110.94 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=57.8
Q ss_pred cccccceeEEecCCc-------cccccch-------hccccc-------------cCEEEEEEEcccccccccchhhhhh
Q 016253 217 KKSGEVYRLFDVGGQ-------RNERRKW-------IHLFEG-------------VSAVIFCAAISEYDQTLFEDEQKNR 269 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq-------~~~r~~w-------~~yf~~-------------~~~iifv~dls~yd~~l~e~~~~nr 269 (392)
++..+.+.+|||+|+ +.++.++ ..|++. +|+++|+++-+.- ..
T Consensus 61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~----------~~ 130 (274)
T 3t5d_A 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH----------GL 130 (274)
T ss_dssp --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS----------SC
T ss_pred CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC----------CC
Confidence 344568999999998 3455555 555554 7899999874321 11
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 016253 270 MMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA 349 (392)
Q Consensus 270 l~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~ 349 (392)
......+++.+.. ++|+++|+||+|+.... ......+-+.+.+..
T Consensus 131 ~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~-----------------------e~~~~~~~i~~~l~~------- 175 (274)
T 3t5d_A 131 KPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE-----------------------ECQQFKKQIMKEIQE------- 175 (274)
T ss_dssp CHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH-----------------------HHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH-----------------------HHHHHHHHHHHHHHH-------
Confidence 1122344555432 68999999999985321 112222223332221
Q ss_pred CCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 350 PDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 350 ~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
..+.++.+||.+++++.++++.+.+.
T Consensus 176 -----~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 176 -----HKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp -----TTCCCCCC-----------CHHHHHT
T ss_pred -----cCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 12334567999999999988887664
No 136
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.08 E-value=1.4e-10 Score=116.77 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=74.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+..+..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+ +. -...+.+..+.+..... ..-.|+++++|
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsf--e~-~~~~~~qt~~~~~~~~~---~~~~~iivviN 152 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEY--EA-GMSVEGQTREHIILAKT---MGLDQLIVAVN 152 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THH--HH-HHSTTCHHHHHHHHHHH---TTCTTCEEEEE
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccc--cc-ccccchHHHHHHHHHHH---cCCCeEEEEEE
Confidence 5566789999999999999999999999999999999863 110 00 00011122222222211 11246999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFK 375 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~ 375 (392)
|+|+.... | .....+...+.+...+... .. ....+.++.+||+++.||.++++
T Consensus 153 K~Dl~~~~--------------~-----~~~~~~~~~~~i~~~~~~~----~~---~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 153 KMDLTEPP--------------Y-----DEKRYKEIVDQVSKFMRSY----GF---NTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CGGGSSST--------------T-----CHHHHHHHHHHHHHHHHHT----TC---CCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccCCCcc--------------c-----cHHHHHHHHHHHHHHHHHc----CC---CcCCceEEEeecccCcccccccc
Confidence 99986421 0 0011222233333333221 10 01236678999999999976543
No 137
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.07 E-value=1.8e-10 Score=101.23 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=76.9
Q ss_pred ccccceeEEecCCccccc------cchhccccc--cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRNER------RKWIHLFEG--VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r------~~w~~yf~~--~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
.++..+.+|||+|++.++ ..|..|++. ++++++|+|.+++ .....++..+.. .+.
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~----~~~ 113 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL-------------ERNLYLTLQLME----MGA 113 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH-------------HHHHHHHHHHHT----TTC
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH-------------HHHHHHHHHHHh----cCC
Confidence 345789999999999886 568888864 9999999997532 223344555543 368
Q ss_pred eEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchh
Q 016253 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKL 369 (392)
Q Consensus 290 ~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~n 369 (392)
|++|++||+|+..++-.. .. +.++ .+.+ .+.+++|||+++.|
T Consensus 114 piilv~nK~Dl~~~~~~~-------------------~~---~~~~-~~~~---------------~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 114 NLLLALNKMDLAKSLGIE-------------------ID---VDKL-EKIL---------------GVKVVPLSAAKKMG 155 (188)
T ss_dssp CEEEEEECHHHHHHTTCC-------------------CC---HHHH-HHHH---------------TSCEEECBGGGTBS
T ss_pred CEEEEEEhhhccccccch-------------------HH---HHHH-HHHh---------------CCCeEEEEecCCCC
Confidence 999999999986532100 01 1111 1111 14567899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 016253 370 VKKTFKLVDETLRRR 384 (392)
Q Consensus 370 I~~vF~~v~~~Il~~ 384 (392)
|+++|+.+.+.+...
T Consensus 156 v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 156 IEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998887543
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.07 E-value=1.3e-09 Score=110.65 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=38.6
Q ss_pred cccceeEEecCCccccccch--------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 219 SGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w--------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
.+..+.+|||+|++.....| ..++++++++++|+|.++-.. .+...++..+ . +.|
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-----------~~~~~i~~~l-~-----~~p 332 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-----------TGDQEIYEQV-K-----HRP 332 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSC-----------HHHHHHHHHH-T-----TSC
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-----------HHHHHHHHhc-c-----CCc
Confidence 34568899999997765444 347899999999999864111 1113334433 2 369
Q ss_pred EEEEeeCCCCccc
Q 016253 291 FMLFLNKFDIFEK 303 (392)
Q Consensus 291 iiL~~NK~Dl~~~ 303 (392)
+++++||+|+...
T Consensus 333 iivV~NK~Dl~~~ 345 (462)
T 3geh_A 333 LILVMNKIDLVEK 345 (462)
T ss_dssp EEEEEECTTSSCG
T ss_pred EEEEEECCCCCcc
Confidence 9999999999764
No 139
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.06 E-value=1.7e-10 Score=100.86 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=70.4
Q ss_pred ccceeEEecCCccccccc--------hhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE
Q 016253 220 GEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 291 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~--------w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i 291 (392)
+..+.+|||+|++..... ...++++++++|+|+|.++.... + ...|+..+... ...++|+
T Consensus 51 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~-------~----~~~~~~~~~~~-~~~~~p~ 118 (172)
T 2gj8_A 51 GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAV-------D----PAEIWPEFIAR-LPAKLPI 118 (172)
T ss_dssp TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCC-------S----HHHHCHHHHHH-SCTTCCE
T ss_pred CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH-------H----HHHHHHHHHHh-cccCCCE
Confidence 456899999999764211 12468999999999998653321 1 12344444332 1246899
Q ss_pred EEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHH
Q 016253 292 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 371 (392)
Q Consensus 292 iL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~ 371 (392)
+|++||+|+.++... +.. .....+++|||++++||+
T Consensus 119 ilv~NK~Dl~~~~~~--------~~~------------------------------------~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 119 TVVRNKADITGETLG--------MSE------------------------------------VNGHALIRLSARTGEGVD 154 (172)
T ss_dssp EEEEECHHHHCCCCE--------EEE------------------------------------ETTEEEEECCTTTCTTHH
T ss_pred EEEEECccCCcchhh--------hhh------------------------------------ccCCceEEEeCCCCCCHH
Confidence 999999998543110 000 011456789999999999
Q ss_pred HHHHHHHHHHH
Q 016253 372 KTFKLVDETLR 382 (392)
Q Consensus 372 ~vF~~v~~~Il 382 (392)
++|+.+.+.+-
T Consensus 155 ~l~~~l~~~~~ 165 (172)
T 2gj8_A 155 VLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.06 E-value=6.9e-10 Score=103.46 Aligned_cols=127 Identities=11% Similarity=0.177 Sum_probs=69.9
Q ss_pred cccceeEEecCCcccccc-----------chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 219 SGEVYRLFDVGGQRNERR-----------KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~-----------~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
.+..+.+|||+|+..+.. .+..++++++++|+|+|.+.+.. .......++..++... ..
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~---------~~~~~~~~l~~~~~~~-~~ 138 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS---------QDQQAAQRVKEIFGED-AM 138 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCH---------HHHHHHHHHHHHHCGG-GG
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCH---------HHHHHHHHHHHHhCch-hh
Confidence 445789999999865432 23347899999999999864211 1122334455554321 12
Q ss_pred CceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcc--eeEEEEEee
Q 016253 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRV--FKIYRTTAL 365 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~--~~~~~TsA~ 365 (392)
..+++++.||+|+..+.+.. +..+. + .+++.+++. .+ . .+. +..+.|||+
T Consensus 139 ~~~i~vv~nK~Dl~~~~~~~-------~i~~~-----~---~~~~~~~~~----~~----~-----~~~~~~~~~~~SA~ 190 (260)
T 2xtp_A 139 GHTIVLFTHKEDLNGGSLMD-------YMHDS-----D---NKALSKLVA----AC----G-----GRICAFNNRAEGSN 190 (260)
T ss_dssp GGEEEEEECGGGGTTCCHHH-------HHHHC-----C---CHHHHHHHH----HT----T-----TCEEECCTTCCHHH
T ss_pred ccEEEEEEcccccCCccHHH-------HHHhc-----c---hHHHHHHHH----Hh----C-----CeEEEecCcccccc
Confidence 23444444599986432110 00000 0 011211211 11 0 110 111468999
Q ss_pred CchhHHHHHHHHHHHHHH
Q 016253 366 DPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 366 d~~nI~~vF~~v~~~Il~ 383 (392)
++.||+++|+.+.+.+..
T Consensus 191 ~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 191 QDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
No 141
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=112.19 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=52.9
Q ss_pred cccceeEEecCCc-------cccccchh-------ccccccC-------------EEEEEEEcccccccccchhhhhhHH
Q 016253 219 SGEVYRLFDVGGQ-------RNERRKWI-------HLFEGVS-------------AVIFCAAISEYDQTLFEDEQKNRMM 271 (392)
Q Consensus 219 ~~~~l~i~DvgGq-------~~~r~~w~-------~yf~~~~-------------~iifv~dls~yd~~l~e~~~~nrl~ 271 (392)
..+.+.+|||+|+ ++++.+|. .|+++++ +++|+++-+ . .....+.
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~--~------~~l~~~d 164 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF--G------HGLKPLD 164 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS--S------SSCCHHH
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC--C------CCcchhH
Confidence 3457999999999 88999997 8887654 455555421 1 1111111
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCC
Q 016253 272 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 351 (392)
Q Consensus 272 es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~ 351 (392)
..++..+ . .++|+|+|+||+|+...+- +.. +........
T Consensus 165 --~~~~~~l-~----~~~piIlV~NK~Dl~~~~e-----------------------v~~----~k~~i~~~~------- 203 (361)
T 2qag_A 165 --VAFMKAI-H----NKVNIVPVIAKADTLTLKE-----------------------RER----LKKRILDEI------- 203 (361)
T ss_dssp --HHHHHHT-C----S-SCEEEEEECCSSSCHHH-----------------------HHH----HHHHHHHHT-------
T ss_pred --HHHHHHh-c----cCCCEEEEEECCCCCCHHH-----------------------HHH----HHHHHHHHH-------
Confidence 1333333 2 4689999999999864321 110 111111111
Q ss_pred CCCcceeEEEEEeeCchhHHHHHHHHHHHHHH
Q 016253 352 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 352 ~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
....+.++.+||+++.+ .+.|..+.+.|..
T Consensus 204 -~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 204 -EEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -TCC-CCSCCCC----------CHHHHHHHHH
T ss_pred -HHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 11235567899999998 8888888877754
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.02 E-value=7.7e-10 Score=110.49 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=74.8
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
..+.+|||+|++.|.+.+......++++|+|+|.++-. ......+.+..+..+ ...|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~------~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence 47899999999999888888888899999999985310 011222333333322 12589999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
....... ...++..+|+. .. ....+.++.+||+++.||+.+|+.+.+.
T Consensus 150 ~~~~~~~-------------------~~~~~i~~~l~----~~---------~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 150 VDKEKAL-------------------ENYRQIKEFIE----GT---------VAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp SCHHHHH-------------------HHHHHHHHHHT----TS---------TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCHHHHH-------------------HHHHHHHHHHH----hc---------CcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 6431000 11222222221 10 0123567889999999999999988775
Q ss_pred H
Q 016253 381 L 381 (392)
Q Consensus 381 I 381 (392)
+
T Consensus 198 ~ 198 (410)
T 1kk1_A 198 I 198 (410)
T ss_dssp S
T ss_pred C
Confidence 4
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.01 E-value=2.8e-10 Score=115.28 Aligned_cols=72 Identities=22% Similarity=0.233 Sum_probs=49.8
Q ss_pred cccccceeEEecCC--------ccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGG--------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgG--------q~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
...+..+.+|||+| ++.++..+..++++++++|||+|..+- +...-.++..++.. .+
T Consensus 67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~------------~~~~d~~l~~~l~~---~~ 131 (456)
T 4dcu_A 67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR---TK 131 (456)
T ss_dssp TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC------------SCHHHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC------------CChHHHHHHHHHHH---cC
Confidence 44556899999999 889999999999999999999996421 11112233333433 46
Q ss_pred ceEEEEeeCCCCccc
Q 016253 289 TSFMLFLNKFDIFEK 303 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~ 303 (392)
.|++|++||+|+.+.
T Consensus 132 ~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 132 KPVVLAVNKLDNTEM 146 (456)
T ss_dssp SCEEEEEECC-----
T ss_pred CCEEEEEECccchhh
Confidence 899999999998643
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=1.6e-09 Score=108.23 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=70.0
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
..+.+|||+|++.+.+.+......++++|+|+|.++-. ......+.+..+.. ....|+++++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~------l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMALEI------LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHHHHH------TTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHHHHH------cCCCeEEEEEEccCC
Confidence 47899999999999998888888999999999985310 01111222333321 123589999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
...... ....++..+|+... ....+.++.+||++++||+.+|+.+.+.
T Consensus 148 ~~~~~~-------------------~~~~~~i~~~l~~~-------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 148 VDEKQA-------------------EENYEQIKEFVKGT-------------IAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp SCTTTT-------------------TTHHHHHHHHHTTS-------------TTTTCCEEEC------CHHHHHHHHHHH
T ss_pred CCHHHH-------------------HHHHHHHHHHHhhc-------------CCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 653110 01233343432210 0123567889999999999999998875
Q ss_pred H
Q 016253 381 L 381 (392)
Q Consensus 381 I 381 (392)
+
T Consensus 196 i 196 (408)
T 1s0u_A 196 I 196 (408)
T ss_dssp S
T ss_pred C
Confidence 4
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.93 E-value=6.8e-10 Score=112.45 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=84.0
Q ss_pred ccccceeEEecCC----------ccccccchhc-cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 218 KSGEVYRLFDVGG----------QRNERRKWIH-LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 218 ~~~~~l~i~DvgG----------q~~~r~~w~~-yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
..+..+++|||+| |+.++.++.. |++.++++|+|+|.++- .. .....++..+..
T Consensus 240 ~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~--------~~---~~~~~~~~~~~~---- 304 (456)
T 4dcu_A 240 YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--------II---EQDKRIAGYAHE---- 304 (456)
T ss_dssp ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC--------CC---HHHHHHHHHHHH----
T ss_pred ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------cC---HHHHHHHHHHHH----
Confidence 3445899999999 8888888764 78999999999997531 01 122233333332
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.+.|++|++||+|+.+++. ...+++.+++.+.+... ....+++|||++
T Consensus 305 ~~~~~ilv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~~~~~SA~~ 352 (456)
T 4dcu_A 305 AGKAVVIVVNKWDAVDKDE---------------------STMKEFEENIRDHFQFL-----------DYAPILFMSALT 352 (456)
T ss_dssp TTCEEEEEEECGGGSCCCS---------------------SHHHHHHHHHHHHCGGG-----------TTSCEEECCTTT
T ss_pred cCCCEEEEEEChhcCCCch---------------------HHHHHHHHHHHHhcccC-----------CCCCEEEEcCCC
Confidence 3589999999999865311 34556666666554321 124578899999
Q ss_pred chhHHHHHHHHHHHHHHh
Q 016253 367 PKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~~ 384 (392)
+.||+++|+.+.+.+...
T Consensus 353 g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 353 KKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CTTGGGHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999877543
No 146
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.92 E-value=3.2e-09 Score=102.06 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=72.1
Q ss_pred ccceeEEecCCccccc----------cchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHH-HHHHHcCCCCCC
Q 016253 220 GEVYRLFDVGGQRNER----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL-FDWVLKQPCFEK 288 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r----------~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~-f~~i~~~~~~~~ 288 (392)
+..+.+|||+|+...+ ..+..+++++++++||+|.++-. ...+ ... ++.+ .. .+
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~----------~~~~-~~~~~~~l-~~---~~ 122 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW----------RPRD-EEIYQNFI-KP---LN 122 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS----------CHHH-HHHHHHHT-GG---GC
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC----------Cchh-HHHHHHHH-Hh---cC
Confidence 6789999999996655 67888999999999999986321 1112 223 3333 22 36
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
+|++|++||+|+...+ ....+..+.+.+.+. ....++.+||+++.
T Consensus 123 ~pvilV~NK~Dl~~~~----------------------~~~~~~~~~l~~~~~-------------~~~~i~~vSA~~g~ 167 (308)
T 3iev_A 123 KPVIVVINKIDKIGPA----------------------KNVLPLIDEIHKKHP-------------ELTEIVPISALKGA 167 (308)
T ss_dssp CCEEEEEECGGGSSSG----------------------GGGHHHHHHHHHHCT-------------TCCCEEECBTTTTB
T ss_pred CCEEEEEECccCCCCH----------------------HHHHHHHHHHHHhcc-------------CCCeEEEEeCCCCC
Confidence 8999999999986221 111222222222210 11335678888888
Q ss_pred hHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETL 381 (392)
Q Consensus 369 nI~~vF~~v~~~I 381 (392)
||+++|+.+.+.+
T Consensus 168 gv~~L~~~l~~~l 180 (308)
T 3iev_A 168 NLDELVKTILKYL 180 (308)
T ss_dssp SHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhC
Confidence 8888888877654
No 147
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.91 E-value=1.9e-09 Score=100.93 Aligned_cols=76 Identities=9% Similarity=0.116 Sum_probs=50.7
Q ss_pred cccccceeEEecCCccccccchhcccc---------ccCEEEEEEEcccccccccchhhhhhH-HHHHHHHHHHHcCCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFE---------GVSAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPCF 286 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~---------~~~~iifv~dls~yd~~l~e~~~~nrl-~es~~~f~~i~~~~~~ 286 (392)
...+..+.+|||+|+..++.....+++ ++++++||++++... .... .+.+..+...+...
T Consensus 80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~--------~~~~~~~~~~~l~~~~~~~-- 149 (262)
T 3def_A 80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA--------VDELDKQVVIAITQTFGKE-- 149 (262)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC--------CCHHHHHHHHHHHHHHCGG--
T ss_pred EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC--------CCHHHHHHHHHHHHHhchh--
Confidence 344568999999999888777666665 889999999874321 1111 23444444444321
Q ss_pred CCceEEEEeeCCCCcc
Q 016253 287 EKTSFMLFLNKFDIFE 302 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~ 302 (392)
...|+++++||+|+..
T Consensus 150 ~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 150 IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp GGGGEEEEEECTTCCC
T ss_pred hhcCEEEEEeCcccCC
Confidence 1248999999999853
No 148
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.91 E-value=1.3e-09 Score=102.23 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=75.0
Q ss_pred cccccceeEEecCCccccccch------hccc--cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERRKW------IHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w------~~yf--~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
..++..+.+|||+|+.+++..| ..|+ .+++++|+|+|.++.+ ..+.++..+.. .+
T Consensus 48 ~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~-------------~~~~~~~~l~~----~~ 110 (258)
T 3a1s_A 48 TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE-------------QSLYLLLEILE----ME 110 (258)
T ss_dssp EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH-------------HHHHHHHHHHT----TT
T ss_pred EECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh-------------hHHHHHHHHHh----cC
Confidence 4456789999999999988755 6676 5899999999986421 22345555543 26
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
+|++|++||+|+.+++-.. .+..+ +.+.+ .+.++.|||+++.
T Consensus 111 ~pvilv~NK~Dl~~~~~i~-------------------~~~~~----l~~~l---------------g~~vi~~SA~~g~ 152 (258)
T 3a1s_A 111 KKVILAMTAIDEAKKTGMK-------------------IDRYE----LQKHL---------------GIPVVFTSSVTGE 152 (258)
T ss_dssp CCEEEEEECHHHHHHTTCC-------------------BCHHH----HHHHH---------------CSCEEECCTTTCT
T ss_pred CCEEEEEECcCCCCccchH-------------------HHHHH----HHHHc---------------CCCEEEEEeeCCc
Confidence 8999999999986532100 11111 11111 1456789999999
Q ss_pred hHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETL 381 (392)
Q Consensus 369 nI~~vF~~v~~~I 381 (392)
||+++|+.+.+.+
T Consensus 153 gi~el~~~i~~~~ 165 (258)
T 3a1s_A 153 GLEELKEKIVEYA 165 (258)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887765
No 149
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.90 E-value=1.5e-09 Score=102.59 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=71.8
Q ss_pred ccceeEEecCCccccc------cchhcccc--ccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceE
Q 016253 220 GEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 291 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r------~~w~~yf~--~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~i 291 (392)
+..+++|||+|+.+++ .++..|+. +++++|+|+|.++ ..+ .+.|+..+.. .++|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence 6789999999999887 57788887 5999999999753 222 2334444443 36899
Q ss_pred EEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHH
Q 016253 292 MLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 371 (392)
Q Consensus 292 iL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~ 371 (392)
+|++||+|+.+++-.. .+.+ + +.+.+ .+.++.|||++++||+
T Consensus 111 ilv~NK~Dl~~~~~~~-------------------~~~~---~-l~~~l---------------g~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKK-------------------INVD---K-LSYHL---------------GVPVVATSALKQTGVD 152 (272)
T ss_dssp EEEEECHHHHHHTTCC-------------------CCHH---H-HHHHH---------------TSCEEECBTTTTBSHH
T ss_pred EEEEEChhhCCcCCcH-------------------HHHH---H-HHHHc---------------CCCEEEEEccCCCCHH
Confidence 9999999986532100 1111 1 11111 1446778888888888
Q ss_pred HHHHHHHHHH
Q 016253 372 KTFKLVDETL 381 (392)
Q Consensus 372 ~vF~~v~~~I 381 (392)
++|+.+.+.+
T Consensus 153 el~~~i~~~~ 162 (272)
T 3b1v_A 153 QVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHHH
Confidence 8888876643
No 150
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.84 E-value=3e-09 Score=100.52 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=71.9
Q ss_pred cccccceeEEecCCccccc----------cchhccc--cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC
Q 016253 217 KKSGEVYRLFDVGGQRNER----------RKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r----------~~w~~yf--~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~ 284 (392)
...+..+.+|||+|+..++ ..+..|+ ++++++|+|+|.++ .++......++.+.
T Consensus 46 ~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~~~~~l~~~---- 111 (274)
T 3i8s_A 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLYLTLQLLEL---- 111 (274)
T ss_dssp ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHHHHHHHHHH----
T ss_pred EeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHHHHHHHHhc----
Confidence 3345678999999998877 3455565 79999999999753 22222223333322
Q ss_pred CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEe
Q 016253 285 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 364 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA 364 (392)
++|+++++||+|+.+++-.. .+.+ .+.+.+ .+.++.|||
T Consensus 112 ---~~p~ivv~NK~Dl~~~~~~~-------------------~~~~----~l~~~l---------------g~~~i~~SA 150 (274)
T 3i8s_A 112 ---GIPCIVALNMLDIAEKQNIR-------------------IEID----ALSARL---------------GCPVIPLVS 150 (274)
T ss_dssp ---TCCEEEEEECHHHHHHTTEE-------------------ECHH----HHHHHH---------------TSCEEECCC
T ss_pred ---CCCEEEEEECccchhhhhHH-------------------HHHH----HHHHhc---------------CCCEEEEEc
Confidence 68999999999986532100 1111 111111 145678999
Q ss_pred eCchhHHHHHHHHHHHH
Q 016253 365 LDPKLVKKTFKLVDETL 381 (392)
Q Consensus 365 ~d~~nI~~vF~~v~~~I 381 (392)
+++.||+++|+.+.+.+
T Consensus 151 ~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYK 167 (274)
T ss_dssp GGGHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887654
No 151
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.84 E-value=1.5e-09 Score=101.70 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=72.9
Q ss_pred cccccceeEEecCCcccccc----------chhccc--cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC
Q 016253 217 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~----------~w~~yf--~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~ 284 (392)
..++..+.+|||+|+.+++. .+..|+ ++++++|+|+|.++ . ...+.+...+..
T Consensus 44 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~----------~---~~~~~l~~~l~~-- 108 (256)
T 3iby_A 44 LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH----------L---ERHLYLTSQLFE-- 108 (256)
T ss_dssp EETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG----------H---HHHHHHHHHHTT--
T ss_pred EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC----------c---hhHHHHHHHHHH--
Confidence 33445899999999988875 677888 89999999999752 1 222333333432
Q ss_pred CCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEe
Q 016253 285 CFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTA 364 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA 364 (392)
.+.|+++++||+|+.+.+-.. .+.+. +.+.+ .+.++.|||
T Consensus 109 --~~~pvilv~NK~Dl~~~~~~~-------------------~~~~~----l~~~l---------------g~~vi~~SA 148 (256)
T 3iby_A 109 --LGKPVVVALNMMDIAEHRGIS-------------------IDTEK----LESLL---------------GCSVIPIQA 148 (256)
T ss_dssp --SCSCEEEEEECHHHHHHTTCE-------------------ECHHH----HHHHH---------------CSCEEECBG
T ss_pred --cCCCEEEEEEChhcCCcCCcH-------------------HHHHH----HHHHc---------------CCCEEEEEC
Confidence 268999999999986542100 11111 12111 145678999
Q ss_pred eCchhHHHHHHHHHHH
Q 016253 365 LDPKLVKKTFKLVDET 380 (392)
Q Consensus 365 ~d~~nI~~vF~~v~~~ 380 (392)
+++.||+++|+.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999888653
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.84 E-value=1.5e-08 Score=104.37 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=56.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.+|||+|++.++..|..+++.++++|+|+|.++-. ......+|..+.. .++|+++|+|
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~-----------~~~t~~~~~~~~~----~~iPiivviN 142 (528)
T 3tr5_A 78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-----------EPRTIKLMEVCRL----RHTPIMTFIN 142 (528)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-----------CHHHHHHHHHHHT----TTCCEEEEEE
T ss_pred EeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-----------CHHHHHHHHHHHH----cCCCEEEEEe
Confidence 556788999999999999999999999999999999975321 1233455555543 2689999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+...
T Consensus 143 K~Dl~~~ 149 (528)
T 3tr5_A 143 KMDRDTR 149 (528)
T ss_dssp CTTSCCS
T ss_pred CCCCccc
Confidence 9999754
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.80 E-value=2.5e-09 Score=107.72 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=80.3
Q ss_pred ccccceeEEecCCc----------cccccchh-ccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 218 KSGEVYRLFDVGGQ----------RNERRKWI-HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 218 ~~~~~l~i~DvgGq----------~~~r~~w~-~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
..+..+++|||+|+ +.++..+. .++++++++|+|+|.++-. . .+...++..+..
T Consensus 220 ~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~----------s-~~~~~~~~~~~~---- 284 (436)
T 2hjg_A 220 YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI----------I-EQDKRIAGYAHE---- 284 (436)
T ss_dssp ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC----------C-HHHHHHHHHHHH----
T ss_pred ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC----------c-HHHHHHHHHHHH----
Confidence 34457999999999 44555554 5889999999999986411 1 122344444433
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.+.|+++++||+|+.+++- ...++..+.+...+... ..+.+++|||++
T Consensus 285 ~~~~iiiv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~l~~~-----------~~~~~~~~SA~t 332 (436)
T 2hjg_A 285 AGKAVVIVVNKWDAVDKDE---------------------STMKEFEENIRDHFQFL-----------DYAPILFMSALT 332 (436)
T ss_dssp TTCEEEEEEECGGGSCCCT---------------------THHHHHHHHHHHHCGGG-----------TTSCEEECCTTT
T ss_pred cCCcEEEEEECccCCCcch---------------------HHHHHHHHHHHHhcccC-----------CCCCEEEEeccc
Confidence 3689999999999865311 12334444444443321 124578899999
Q ss_pred chhHHHHHHHHHHHHHHh
Q 016253 367 PKLVKKTFKLVDETLRRR 384 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~~ 384 (392)
+.||+++|+.+.+.+...
T Consensus 333 g~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 333 KKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CTTGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999998887643
No 154
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.79 E-value=6.6e-09 Score=104.56 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=46.8
Q ss_pred cccccceeEEecCCcc--------ccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 217 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~--------~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
...+..+.+|||||++ .++..|..++++++++|||+|.++-. + ..-.++..++.. .+
T Consensus 47 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~-------~-----~~d~~~~~~l~~---~~ 111 (436)
T 2hjg_A 47 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV-------T-----AADEEVAKILYR---TK 111 (436)
T ss_dssp TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS-------C-----HHHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC-------C-----HHHHHHHHHHHH---cC
Confidence 5566789999999996 67889999999999999999975310 1 111223333332 36
Q ss_pred ceEEEEeeCCCCccc
Q 016253 289 TSFMLFLNKFDIFEK 303 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~ 303 (392)
.|++|++||+|+...
T Consensus 112 ~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 112 KPVVLAVNKLDNTEM 126 (436)
T ss_dssp SCEEEEEECCCC---
T ss_pred CCEEEEEECccCccc
Confidence 899999999998754
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.74 E-value=3e-08 Score=98.57 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=60.1
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+++....+ +.....+.+|||+|++.|.+.+..+++.++++|+|+|.++-. +.++.+.+.
T Consensus 50 ~giTi~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-----------~~qt~e~l~ 112 (397)
T 1d2e_A 50 RGITINAAHVEY------STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGP-----------MPQTREHLL 112 (397)
T ss_dssp TTEEEECEEEEE------ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-----------CHHHHHHHH
T ss_pred cCcEEEeeeEEe------ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCC-----------CHHHHHHHH
Confidence 345666666666 556788999999999999999999999999999999986421 122233332
Q ss_pred HHHcCCCCCCce-EEEEeeCCCCcc
Q 016253 279 WVLKQPCFEKTS-FMLFLNKFDIFE 302 (392)
Q Consensus 279 ~i~~~~~~~~~~-iiL~~NK~Dl~~ 302 (392)
.+.. .++| +++++||+|+..
T Consensus 113 ~~~~----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 113 LARQ----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHH----TTCCCEEEEEECGGGCS
T ss_pred HHHH----cCCCeEEEEEECcccCC
Confidence 2221 2577 789999999863
No 156
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.74 E-value=2e-08 Score=96.26 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=49.9
Q ss_pred ccccceeEEecCCccc--------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 218 KSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~--------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
.++..+.+|||+|+.. +...+..+++++++++||+|.++-.. .. ...+++.+-.. ..++
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~---------~~--~~~i~~~l~~~--~~~~ 118 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT---------PE--DELVARALKPL--VGKV 118 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC---------HH--HHHHHHHHGGG--TTTS
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC---------hH--HHHHHHHHHhh--cCCC
Confidence 3467899999999987 45567788999999999999864211 11 11122333221 2468
Q ss_pred eEEEEeeCCCCcc
Q 016253 290 SFMLFLNKFDIFE 302 (392)
Q Consensus 290 ~iiL~~NK~Dl~~ 302 (392)
|++|++||+|+..
T Consensus 119 p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 119 PILLVGNKLDAAK 131 (301)
T ss_dssp CEEEEEECGGGCS
T ss_pred CEEEEEECcccCC
Confidence 9999999999864
No 157
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.73 E-value=4.9e-09 Score=105.07 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=71.2
Q ss_pred ceeEEecCCccccccc-------hhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEE
Q 016253 222 VYRLFDVGGQRNERRK-------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 294 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~~-------w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~ 294 (392)
.+.+|||+|+..+... +..++++++++|+|+|.+ ......+++. .+... +.|++++
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~---~l~~~----~~piIvV 146 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA----------PTPYEDDVVN---LFKEM----EIPFVVV 146 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS----------CCHHHHHHHH---HHHHT----TCCEEEE
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC----------ChHHHHHHHH---HHHhc----CCCEEEE
Confidence 8999999999877655 566899999999999962 1112223333 33222 6899999
Q ss_pred eeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHH
Q 016253 295 LNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTF 374 (392)
Q Consensus 295 ~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF 374 (392)
+||+|+..+... +.+.+ +. ....+.++++||+++.||+++|
T Consensus 147 ~NK~Dl~~~~~~-----------------------~~~~~-----l~-----------~~~g~~v~~vSAktg~gI~eL~ 187 (423)
T 3qq5_A 147 VNKIDVLGEKAE-----------------------ELKGL-----YE-----------SRYEAKVLLVSALQKKGFDDIG 187 (423)
T ss_dssp CCCCTTTTCCCT-----------------------HHHHH-----SS-----------CCTTCCCCCCSSCCTTSTTTHH
T ss_pred EeCcCCCCccHH-----------------------HHHHH-----HH-----------HHcCCCEEEEECCCCCCHHHHH
Confidence 999998754210 11111 00 0112456789999999999999
Q ss_pred HHHHHHHH
Q 016253 375 KLVDETLR 382 (392)
Q Consensus 375 ~~v~~~Il 382 (392)
+.+.+.+.
T Consensus 188 ~~L~~~l~ 195 (423)
T 3qq5_A 188 KTISEILP 195 (423)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhh
Confidence 99988763
No 158
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.73 E-value=1.5e-08 Score=100.97 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=76.7
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
..+.+|||+|++.+.+.+..++.+++++|+|+|.++-. ......+.+.+.... ...|+++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~------~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGII------GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHc------CCCCEEEEEECccc
Confidence 57899999999999999999999999999999975311 111222223222222 12489999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
.... ...+..+.+.+.+... ....+.++.+||+++.||+.+|+.+.+.
T Consensus 142 ~~~~-----------------------~~~~~~~~i~~~l~~~---------~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 142 VSKE-----------------------EALSQYRQIKQFTKGT---------WAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp SCHH-----------------------HHHHHHHHHHHHHTTS---------TTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred cchH-----------------------HHHHHHHHHHHHHHhh---------CCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 6431 1122222222222111 0123567889999999999999998875
Q ss_pred H
Q 016253 381 L 381 (392)
Q Consensus 381 I 381 (392)
+
T Consensus 190 l 190 (403)
T 3sjy_A 190 I 190 (403)
T ss_dssp S
T ss_pred C
Confidence 5
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.72 E-value=1.8e-08 Score=102.80 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=77.3
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
..+..+.+|||+|++.+.+.+..++..++++|+|+|.++- -.....+.+.+... .++|+++++||
T Consensus 70 ~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~-------~~ip~IvviNK 134 (482)
T 1wb1_A 70 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG--------PKTQTGEHMLILDH-------FNIPIIVVITK 134 (482)
T ss_dssp ETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC--------SCHHHHHHHHHHHH-------TTCCBCEEEEC
T ss_pred ECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC--------ccHHHHHHHHHHHH-------cCCCEEEEEEC
Confidence 3456899999999999999999999999999999997531 01111122222221 25788999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+..+. ..++..+-+.+.+.... . -..+.++.+||++++||.++++.+
T Consensus 135 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~~---~-----~~~~~ii~vSA~~g~gI~~L~~~L 183 (482)
T 1wb1_A 135 SDNAGTE-----------------------EIKRTEMIMKSILQSTH---N-----LKNSSIIPISAKTGFGVDELKNLI 183 (482)
T ss_dssp TTSSCHH-----------------------HHHHHHHHHHHHHHHSS---S-----GGGCCEEECCTTTCTTHHHHHHHH
T ss_pred CCcccch-----------------------hHHHHHHHHHHHHhhhc---c-----cccceEEEEECcCCCCHHHHHHHH
Confidence 9986421 11111222222221110 0 012456789999999999999998
Q ss_pred HHHHH
Q 016253 378 DETLR 382 (392)
Q Consensus 378 ~~~Il 382 (392)
.+.+-
T Consensus 184 ~~~i~ 188 (482)
T 1wb1_A 184 ITTLN 188 (482)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 88763
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.70 E-value=3.6e-08 Score=98.16 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=53.3
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce-EEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~-iiL~~ 295 (392)
+..+..+.+|||+|++.|.+.+..+++.++++|+|+|.++-. +....+++..+.. .++| +++++
T Consensus 71 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-----------~~qt~~~l~~~~~----~~ip~iivvi 135 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-----------MPQTREHILLARQ----VGVPYIVVFM 135 (405)
T ss_dssp ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC-----------CHHHHHHHHHHHH----TTCCCEEEEE
T ss_pred ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC-----------cHHHHHHHHHHHH----cCCCEEEEEE
Confidence 555678999999999999999999999999999999975321 1223334433322 2567 89999
Q ss_pred eCCCCcc
Q 016253 296 NKFDIFE 302 (392)
Q Consensus 296 NK~Dl~~ 302 (392)
||+|+..
T Consensus 136 NK~Dl~~ 142 (405)
T 2c78_A 136 NKVDMVD 142 (405)
T ss_dssp ECGGGCC
T ss_pred ECccccC
Confidence 9999863
No 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.69 E-value=4.9e-08 Score=101.87 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=77.4
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
++.+.+++|||+|+..|...|..+++.++++|+|+|.++-.+. .+...|..... .+.|+++|+||
T Consensus 68 g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~-----------qt~~~~~~~~~----~~ipiIvViNK 132 (599)
T 3cb4_D 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEA-----------QTLANCYTAME----MDLEVVPVLNK 132 (599)
T ss_dssp SCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCT-----------HHHHHHHHHHH----TTCEEEEEEEC
T ss_pred CCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCH-----------HHHHHHHHHHH----CCCCEEEeeec
Confidence 3457899999999999999999999999999999998642211 22233333332 26899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+..+. .++..+-+.+.+. .. ...++.+||+++.||+.+|+.+
T Consensus 133 iDl~~a~------------------------~~~v~~ei~~~lg------~~------~~~vi~vSAktg~GI~~Ll~~I 176 (599)
T 3cb4_D 133 IDLPAAD------------------------PERVAEEIEDIVG------ID------ATDAVRCSAKTGVGVQDVLERL 176 (599)
T ss_dssp TTSTTCC------------------------HHHHHHHHHHHTC------CC------CTTCEEECTTTCTTHHHHHHHH
T ss_pred cCccccc------------------------HHHHHHHHHHHhC------CC------cceEEEeecccCCCchhHHHHH
Confidence 9986431 1222222222220 00 0124689999999999999988
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 177 ~~~l 180 (599)
T 3cb4_D 177 VRDI 180 (599)
T ss_dssp HHHS
T ss_pred hhcC
Confidence 7765
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.69 E-value=2.3e-08 Score=100.63 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=70.9
Q ss_pred cccceeEEecCCccc---------cccchhccccccCEEEEEEEcccccccccchhhhhhHHH-HHHHHHHHHcCCCCCC
Q 016253 219 SGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME-TKELFDWVLKQPCFEK 288 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~---------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~e-s~~~f~~i~~~~~~~~ 288 (392)
.+..+++|||||++. .+..|..|+++++++|||+|.++- .....+ ...++.. .+
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~---------~~~~d~~i~~~l~~-------~~ 110 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG---------ITKEDESLADFLRK-------ST 110 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC---------CCHHHHHHHHHHHH-------HT
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHHHHHHHHHH-------cC
Confidence 345789999999874 467789999999999999997521 111111 1222222 25
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHH-HHHHHHHHHHHhhccCCCCCCCcce-eEEEEEeeC
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENA-YEFVKKKFEELYFQSTAPDRVDRVF-KIYRTTALD 366 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~-~~~i~~~f~~~~~~~~~~~~~~r~~-~~~~TsA~d 366 (392)
.|++|++||+|+.+. .. .++ .+| ..+ .+ .++.+||++
T Consensus 111 ~p~ilv~NK~D~~~~-~~-----------------------~~~~~~~-----~~l------------g~~~~~~iSA~~ 149 (439)
T 1mky_A 111 VDTILVANKAENLRE-FE-----------------------REVKPEL-----YSL------------GFGEPIPVSAEH 149 (439)
T ss_dssp CCEEEEEESCCSHHH-HH-----------------------HHTHHHH-----GGG------------SSCSCEECBTTT
T ss_pred CCEEEEEeCCCCccc-cH-----------------------HHHHHHH-----Hhc------------CCCCEEEEeccC
Confidence 899999999998532 00 011 111 111 01 246799999
Q ss_pred chhHHHHHHHHHHHHHH
Q 016253 367 PKLVKKTFKLVDETLRR 383 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~ 383 (392)
+.||.++|+.+.+.+..
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887754
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.67 E-value=2.9e-08 Score=99.85 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=51.6
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
......+.+|||+|++.|.+.+..++..++++|+|+|.++-. +....+++..+.. ....|+++++|
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-----------~~qt~~~l~~~~~---~~~~~iIvviN 165 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-----------QTQTRRHSYIASL---LGIKHIVVAIN 165 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-----------CHHHHHHHHHHHH---TTCCEEEEEEE
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-----------cHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 455678999999999999999999999999999999985311 1122222222211 12237999999
Q ss_pred CCCCcc
Q 016253 297 KFDIFE 302 (392)
Q Consensus 297 K~Dl~~ 302 (392)
|+|+..
T Consensus 166 K~Dl~~ 171 (434)
T 1zun_B 166 KMDLNG 171 (434)
T ss_dssp CTTTTT
T ss_pred cCcCCc
Confidence 999864
No 164
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.64 E-value=4.3e-08 Score=92.08 Aligned_cols=77 Identities=6% Similarity=0.050 Sum_probs=46.6
Q ss_pred cccccceeEEecCCccccccchh-------cc--ccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCC
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWI-------HL--FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~-------~y--f~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~ 287 (392)
...+..+.+|||+|+..+..... .| +++++++|||+|++... . .. .-.+.+..+...+... .
T Consensus 83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~--~~----~~~~~~~~l~~~~~~~--~ 153 (270)
T 1h65_A 83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-V--DN----LDKLVAKAITDSFGKG--I 153 (270)
T ss_dssp EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-C--CH----HHHHHHHHHHHHHCGG--G
T ss_pred eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-C--CH----HHHHHHHHHHHHhCcc--c
Confidence 34456899999999977653322 22 35799999999985321 0 00 0113333343333211 1
Q ss_pred CceEEEEeeCCCCcc
Q 016253 288 KTSFMLFLNKFDIFE 302 (392)
Q Consensus 288 ~~~iiL~~NK~Dl~~ 302 (392)
..|+++++||+|+..
T Consensus 154 ~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 154 WNKAIVALTHAQFSP 168 (270)
T ss_dssp GGGEEEEEECCSCCC
T ss_pred ccCEEEEEECcccCC
Confidence 269999999999853
No 165
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.64 E-value=1.1e-08 Score=105.44 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=76.7
Q ss_pred ccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 220 ~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
+..+.+|||+|++.|...|..+++.++++|+|+|.++ ..+..+...+..+.. .++|+++++||+|
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKiD 115 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKCD 115 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSGG
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEeccc
Confidence 4578999999999999999999999999999999753 122344444444433 3679999999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+........... ..++ + .. . ..-...+.++.+||+++.||+++|+.+..
T Consensus 116 l~~~~~~~v~~~----l~~~-----~-----------------~~----~-e~~~~~~~iv~vSAktG~GI~eLle~I~~ 164 (537)
T 3izy_P 116 KAEADPEKVKKE----LLAY-----D-----------------VV----C-EDYGGDVQAVHVSALTGENMMALAEATIA 164 (537)
T ss_dssp GTTTSCCSSSSH----HHHT-----T-----------------SC----C-CCSSSSEEECCCCSSSSCSSHHHHHHHHH
T ss_pred ccccchHHHHHH----HHhh-----h-----------------hh----H-HhcCCCceEEEEECCCCCCchhHHHHHHH
Confidence 865321110000 0000 0 00 0 00011356678999999999999998876
Q ss_pred HH
Q 016253 380 TL 381 (392)
Q Consensus 380 ~I 381 (392)
.+
T Consensus 165 l~ 166 (537)
T 3izy_P 165 LA 166 (537)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 166
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.63 E-value=8.1e-08 Score=100.13 Aligned_cols=113 Identities=9% Similarity=0.078 Sum_probs=76.7
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
...+.+++|||+|+..|...|..+++.++++|+|+|.++-.+ .+....|..... .+.|+++|+||
T Consensus 70 g~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-----------~qt~~~~~~a~~----~~ipiIvviNK 134 (600)
T 2ywe_A 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-----------AQTVANFWKAVE----QDLVIIPVINK 134 (600)
T ss_dssp SCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-----------HHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred CCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-----------HHHHHHHHHHHH----CCCCEEEEEec
Confidence 345789999999999999999999999999999999863211 122333333332 36899999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+..+. .++..+-+.+.+. . ....++++||+++.||+.+|+.+
T Consensus 135 iDl~~a~------------------------~~~v~~el~~~lg-------~-----~~~~vi~vSAktg~GI~~Lle~I 178 (600)
T 2ywe_A 135 IDLPSAD------------------------VDRVKKQIEEVLG-------L-----DPEEAILASAKEGIGIEEILEAI 178 (600)
T ss_dssp TTSTTCC------------------------HHHHHHHHHHTSC-------C-----CGGGCEECBTTTTBSHHHHHHHH
T ss_pred cCccccC------------------------HHHHHHHHHHhhC-------C-----CcccEEEEEeecCCCchHHHHHH
Confidence 9986431 1122221221110 0 01124679999999999999988
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 179 ~~~l 182 (600)
T 2ywe_A 179 VNRI 182 (600)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 7765
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.60 E-value=2.7e-08 Score=101.64 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=73.2
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+..+.+|||+|++.|...|..++..++++|+|+|.++=- .. .+.+.+..... .++|+++++||+
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~--------~~---qT~e~l~~~~~----~~vPiIVviNKi 113 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV--------MP---QTIEAIQHAKA----AQVPVVVAVNKI 113 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS--------CT---TTHHHHHHHHH----TTCCEEEEEECS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc--------cH---HHHHHHHHHHh----cCceEEEEEEec
Confidence 4457899999999999999999999999999999975311 11 11222222221 368999999999
Q ss_pred CCcccccccc--CccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHH
Q 016253 299 DIFEKKVLKV--PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKL 376 (392)
Q Consensus 299 Dl~~~kl~~~--~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~ 376 (392)
|+........ .+.....+++. -...+.++.+||+++.||.++|+.
T Consensus 114 Dl~~~~~~~v~~~l~~~~~~~~~---------------------------------~~~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 114 DKPEADPDRVKNELSQYGILPEE---------------------------------WGGESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp SSSTTCCCCTTCCCCCCCCCTTC---------------------------------CSSSCEEEECCTTTCTTCTTHHHH
T ss_pred cccccCHHHHHHHHHHhhhhHHH---------------------------------hCCCccEEEEeeeeccCcchhhhh
Confidence 9975321110 11000000000 011256788999999999999988
Q ss_pred HHH
Q 016253 377 VDE 379 (392)
Q Consensus 377 v~~ 379 (392)
+..
T Consensus 161 I~~ 163 (501)
T 1zo1_I 161 ILL 163 (501)
T ss_dssp TTT
T ss_pred hhh
Confidence 753
No 168
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.60 E-value=1e-06 Score=93.60 Aligned_cols=134 Identities=11% Similarity=0.211 Sum_probs=78.2
Q ss_pred cceeEEecCCccc---cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 221 EVYRLFDVGGQRN---ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 221 ~~l~i~DvgGq~~---~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
..+.+|||+|... ....+..|++++++||||+|.+.- ... .....|...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~----------~s~-~e~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP----------CTL-GERRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST----------TCH-HHHHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc----------cch-hHHHHHHHHHHh---hCCCEEEEEEC
Confidence 4699999999754 467788999999999999997421 111 122334333332 25689999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCC-CCCCCcceeEEEEEee-----------
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA-PDRVDRVFKIYRTTAL----------- 365 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~-~~~~~r~~~~~~TsA~----------- 365 (392)
+|+....... + ......+++.+.+...+......... .+.......++.+||+
T Consensus 240 ~Dl~~~~~~~-~--------------ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 240 WDQVRESLID-P--------------DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp GGGGGGGCSS-T--------------TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred cccccccccC-h--------------hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 9986542100 0 00012333333333322221110000 0000112346789999
Q ss_pred ---CchhHHHHHHHHHHHHHH
Q 016253 366 ---DPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 366 ---d~~nI~~vF~~v~~~Il~ 383 (392)
++.++..+++.+.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887753
No 169
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.58 E-value=6.5e-08 Score=94.32 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=75.4
Q ss_pred cceeEEecCCcc----ccccchhccccc---cCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcC-CCCCCceEE
Q 016253 221 EVYRLFDVGGQR----NERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFM 292 (392)
Q Consensus 221 ~~l~i~DvgGq~----~~r~~w~~yf~~---~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~-~~~~~~~ii 292 (392)
..+.||||+|+. ..+.++..|++. ++++|+|+|+++.+ ..+.+.+...+..++... +.+.+.|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l~~~p~i 278 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQI 278 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBC
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhhcCCCEE
Confidence 579999999963 455566666664 99999999997532 123333444444555432 335679999
Q ss_pred EEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHH
Q 016253 293 LFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKK 372 (392)
Q Consensus 293 L~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~ 372 (392)
|++||+|+..++ +.. + .+.+.+ . . .+.++.+||+++++|++
T Consensus 279 lV~NK~Dl~~~~-------------------------e~~-~----~l~~~l----~----~-~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 279 IVANKMDMPEAA-------------------------ENL-E----AFKEKL----T----D-DYPVFPISAVTREGLRE 319 (342)
T ss_dssp BEEECTTSTTHH-------------------------HHH-H----HHHHHC----C----S-CCCBCCCSSCCSSTTHH
T ss_pred EEEECccCCCCH-------------------------HHH-H----HHHHHh----h----c-CCCEEEEECCCCcCHHH
Confidence 999999986431 001 1 111111 0 0 13456799999999999
Q ss_pred HHHHHHHHHH
Q 016253 373 TFKLVDETLR 382 (392)
Q Consensus 373 vF~~v~~~Il 382 (392)
+|..+.+.+.
T Consensus 320 L~~~l~~~l~ 329 (342)
T 1lnz_A 320 LLFEVANQLE 329 (342)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988774
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.58 E-value=5.4e-08 Score=98.82 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=43.1
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|..|+++....| ...+..+.+|||+||+.|.+.+..++..++++|+|+|.++-.. + .+.+....+.+.+.
T Consensus 105 ~giTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~---e-~sf~~~~qt~e~l~ 174 (467)
T 1r5b_A 105 KGKTVEVGRAYF------ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF---E-AGFERGGQTREHAV 174 (467)
T ss_dssp --------CCEE------ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHH---H-HTTSTTCCHHHHHH
T ss_pred cCceEEeeeEEE------ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCcc---c-cccCCCCcHHHHHH
Confidence 345555554555 4456789999999999999999999999999999999853100 0 00000011122222
Q ss_pred HHHcCCCCCCce-EEEEeeCCCCcc
Q 016253 279 WVLKQPCFEKTS-FMLFLNKFDIFE 302 (392)
Q Consensus 279 ~i~~~~~~~~~~-iiL~~NK~Dl~~ 302 (392)
.... .++| +++++||+|+..
T Consensus 175 ~~~~----~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 175 LART----QGINHLVVVINKMDEPS 195 (467)
T ss_dssp HHHH----TTCSSEEEEEECTTSTT
T ss_pred HHHH----cCCCEEEEEEECccCCC
Confidence 1211 2466 999999999853
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.53 E-value=2.8e-07 Score=96.09 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=80.6
Q ss_pred cceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl 300 (392)
..+.+|||+|++.|...|..+++.++++|+|+|.++= - ...+...+..+.. .++|+++++||+|+
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G--------v---~~qT~e~l~~l~~----~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--------F---KPQTQEALNILRM----YRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC--------C---CHHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------c---cHhHHHHHHHHHH----cCCeEEEEeccccc
Confidence 3589999999999999999999999999999998531 0 1122223332222 36899999999998
Q ss_pred ccccccccCccccccccccccCCCCcccHHHHHHH----HHHHHHHHhhccC---CCCCCCcceeEEEEEeeCchhHHHH
Q 016253 301 FEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF----VKKKFEELYFQST---APDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 301 ~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~----i~~~f~~~~~~~~---~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
....-.. ....++... ...+ ..+.+.+.- +...+.+...... .-....+.+.++.+||+++.||..+
T Consensus 135 ~~~~~~~---~~~~~~e~s--a~~~-~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eL 208 (594)
T 1g7s_A 135 IHGWRVH---EGRPFMETF--SKQD-IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPEL 208 (594)
T ss_dssp STTCCCC---TTCCHHHHH--TTSC-HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHH
T ss_pred ccccccc---cCCchHHHH--HHhH-HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhH
Confidence 6431100 001111111 0111 222222211 1222221110000 0000123467788999999999999
Q ss_pred HHHHHHHHH
Q 016253 374 FKLVDETLR 382 (392)
Q Consensus 374 F~~v~~~Il 382 (392)
++.+...+-
T Consensus 209 l~~I~~~~~ 217 (594)
T 1g7s_A 209 LTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999887653
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.52 E-value=1.7e-07 Score=94.86 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=51.0
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc-eEEEEe
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT-SFMLFL 295 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~-~iiL~~ 295 (392)
+..+..+.+|||+||+.|.+.+..++..++++|+|+|.++-.. + .+.+........+..... .++ ++++++
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~---~-~sf~~~~qt~~~~~~~~~----~~v~~iivvi 152 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF---E-AGISKDGQTREHALLAFT----LGVRQLIVAV 152 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHH---H-HHTCTTSHHHHHHHHHHH----TTCCEEEEEE
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCcc---c-cccCcchhHHHHHHHHHH----cCCCeEEEEE
Confidence 5556789999999999999999999999999999999752100 0 000000022222222211 135 499999
Q ss_pred eCCCCc
Q 016253 296 NKFDIF 301 (392)
Q Consensus 296 NK~Dl~ 301 (392)
||+|+.
T Consensus 153 NK~Dl~ 158 (458)
T 1f60_A 153 NKMDSV 158 (458)
T ss_dssp ECGGGG
T ss_pred Eccccc
Confidence 999986
No 173
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.51 E-value=9.7e-08 Score=100.03 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=74.9
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
...+..+.||||+|++.+.+.+..++++++++|+|+|.++-. .+ ...+........+... .. ....|++|++|
T Consensus 241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e-~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvN 313 (611)
T 3izq_1 241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FE-SGFDLDGQTKEHMLLA-SS--LGIHNLIIAMN 313 (611)
T ss_dssp ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HH-TTCCTTSHHHHHHHHH-HT--TTCCEEEEEEE
T ss_pred ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---cc-ccchhhhHHHHHHHHH-HH--cCCCeEEEEEe
Confidence 556678999999999999999999999999999999985310 00 0000011111211111 11 22346999999
Q ss_pred CCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHH
Q 016253 297 KFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 297 K~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
|+|+.... ....++..+.+...+..+. . ....+.++.+||++|.||.++
T Consensus 314 KiDl~~~~---------------------~~~~~ei~~~l~~~l~~~g----~---~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWS---------------------QQRFEEIKSKLLPYLVDIG----F---FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTC---------------------HHHHHHHHHHHHHHHHHHT----C---CGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchh---------------------HHHHHHHHHHHHHHHHhhc----c---cccCccEEeeecccCCCcccc
Confidence 99986421 0223444444444443331 0 112366788999999999865
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.49 E-value=5.2e-07 Score=99.42 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=55.8
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW 279 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~ 279 (392)
..|+.+....+ +..+..+.+|||+||+.|.+.+..+++.++++|+|+|.++-. .. +..+++..
T Consensus 344 GITIdva~v~f------~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv--------~~---QTrEhL~l 406 (1289)
T 3avx_A 344 GITINTSHVEY------DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP--------MP---QTREHILL 406 (1289)
T ss_dssp ----CCSCEEE------ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS--------CT---THHHHHHH
T ss_pred ceeEEEEEEEE------cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC--------cH---HHHHHHHH
Confidence 33444444455 566789999999999999999999999999999999986421 11 12222222
Q ss_pred HHcCCCCCCce-EEEEeeCCCCcc
Q 016253 280 VLKQPCFEKTS-FMLFLNKFDIFE 302 (392)
Q Consensus 280 i~~~~~~~~~~-iiL~~NK~Dl~~ 302 (392)
+.. .++| +++++||+|+..
T Consensus 407 l~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 407 GRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHH----HTCSCEEEEEECCTTCC
T ss_pred HHH----cCCCeEEEEEeeccccc
Confidence 211 1467 899999999864
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.46 E-value=1e-06 Score=86.60 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=73.5
Q ss_pred ccceeEEecCCcc---------ccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCce
Q 016253 220 GEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 290 (392)
Q Consensus 220 ~~~l~i~DvgGq~---------~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~ 290 (392)
+..+.+|||+|+- .+++.+. ++..++.+++|+|+++.+. .....+..+.+++..+ ...+.|
T Consensus 225 g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~-----~~~~~~~~~~~~L~~l----~~~~~p 294 (364)
T 2qtf_A 225 NRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSEN-----LLIETLQSSFEILREI----GVSGKP 294 (364)
T ss_dssp TEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHH-----HHHHHHHHHHHHHHHH----TCCSCC
T ss_pred CEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcc-----hHHHHHHHHHHHHHHh----CcCCCC
Confidence 3578999999982 2444444 5789999999999864210 0112222333334433 234689
Q ss_pred EEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhH
Q 016253 291 FMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 370 (392)
Q Consensus 291 iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI 370 (392)
+++++||+|+...... .....+.++.. .+ . .....+..|||+++.++
T Consensus 295 ~ilV~NK~Dl~~~~~~--------------------~~~~~~~~l~~----~l----~-----~~~~~~~~~SA~~g~gi 341 (364)
T 2qtf_A 295 ILVTLNKIDKINGDLY--------------------KKLDLVEKLSK----EL----Y-----SPIFDVIPISALKRTNL 341 (364)
T ss_dssp EEEEEECGGGCCSCHH--------------------HHHHHHHHHHH----HH----C-----SCEEEEEECBTTTTBSH
T ss_pred EEEEEECCCCCCchHH--------------------HHHHHHHHHHH----Hh----c-----CCCCcEEEEECCCCcCH
Confidence 9999999998642100 01111211111 11 0 01134578999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 016253 371 KKTFKLVDETLRRRH 385 (392)
Q Consensus 371 ~~vF~~v~~~Il~~~ 385 (392)
+.+++.+.+.+....
T Consensus 342 ~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 342 ELLRDKIYQLATQLS 356 (364)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccC
Confidence 999999988776543
No 176
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.45 E-value=3.7e-07 Score=91.86 Aligned_cols=118 Identities=12% Similarity=0.194 Sum_probs=70.5
Q ss_pred cccceeEEecCCccccccch------------hccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 219 SGEVYRLFDVGGQRNERRKW------------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w------------~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
.+..+.+|||+|+++.+... ..+++.++++++|+|.++-. +. +...+...+..
T Consensus 226 ~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~-------~~----~~~~i~~~l~~---- 290 (439)
T 1mky_A 226 DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGI-------TR----QDQRMAGLMER---- 290 (439)
T ss_dssp TTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCC-------CH----HHHHHHHHHHH----
T ss_pred CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCC-------CH----HHHHHHHHHHH----
Confidence 34578999999996654432 34677899999999975311 11 01122222221
Q ss_pred CCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeC
Q 016253 287 EKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALD 366 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d 366 (392)
.+.|+++++||+|+.+++- ...++..+.+...+... ....+++|||++
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~~~~~-----------~~~~~~~~SA~~ 338 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHRE---------------------KRYDEFTKLFREKLYFI-----------DYSPLIFTSADK 338 (439)
T ss_dssp TTCEEEEEEECGGGSTTGG---------------------GCHHHHHHHHHHHCGGG-----------TTSCEEECBTTT
T ss_pred cCCCEEEEEECccCCCchh---------------------hHHHHHHHHHHHHhccC-----------CCCcEEEEECCC
Confidence 2589999999999864321 11233333333333221 124567899999
Q ss_pred chhHHHHHHHHHHHHHH
Q 016253 367 PKLVKKTFKLVDETLRR 383 (392)
Q Consensus 367 ~~nI~~vF~~v~~~Il~ 383 (392)
|.||+++|+.+.+.+..
T Consensus 339 g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 339 GWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887644
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.44 E-value=4.5e-07 Score=96.31 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=56.2
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.+|||+|+..++..|..+++.++++|+|+|.++..+ ......|..+.. .+.|+++|+|
T Consensus 73 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-----------~~t~~~~~~~~~----~~~p~ivviN 137 (691)
T 1dar_A 73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-----------PQSETVWRQAEK----YKVPRIAFAN 137 (691)
T ss_dssp EETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-----------HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred EECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-----------hhhHHHHHHHHH----cCCCEEEEEE
Confidence 4556789999999999999999999999999999999864322 122334444433 2689999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+...
T Consensus 138 KiD~~~~ 144 (691)
T 1dar_A 138 KMDKTGA 144 (691)
T ss_dssp CTTSTTC
T ss_pred CCCcccC
Confidence 9999764
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.41 E-value=1.2e-06 Score=93.29 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=54.7
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+.+.+.||||+|+..|...|..+++.++++|+|+|.++-.+ ......|..... .++|+++|+||
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-----------~qt~~~~~~~~~----~~ip~ilviNK 143 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-----------PQSETVWRQANK----YKVPRIAFVNK 143 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-----------HHHHHHHHHHHH----cCCCEEEEEeC
Confidence 344899999999999999999999999999999999864211 123344444432 26899999999
Q ss_pred CCCccc
Q 016253 298 FDIFEK 303 (392)
Q Consensus 298 ~Dl~~~ 303 (392)
+|+...
T Consensus 144 iD~~~~ 149 (704)
T 2rdo_7 144 MDRMGA 149 (704)
T ss_pred CCcccc
Confidence 999764
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.34 E-value=1.4e-07 Score=98.46 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=38.6
Q ss_pred ceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEccccc--ccccchhhhhhHHHHHHHH
Q 016253 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYD--QTLFEDEQKNRMMETKELF 277 (392)
Q Consensus 200 ~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd--~~l~e~~~~nrl~es~~~f 277 (392)
..|+.+....| ...+..+.||||+|++.|.+.+..++..++++|+|+|.++-. .-+. ......+.+.+.
T Consensus 240 GiTid~~~~~~------~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~---~~~qt~e~l~~~ 310 (592)
T 3mca_A 240 GVTMDVASTTF------ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL---ENGQTREHAYLL 310 (592)
T ss_dssp -------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSC---SCSSHHHHHHHH
T ss_pred CeeEEeeEEEE------EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccc---cchHHHHHHHHH
Confidence 34444444555 455678999999999999999999999999999999986310 0000 011111222222
Q ss_pred HHHHcCCCCCCce-EEEEeeCCCCcc
Q 016253 278 DWVLKQPCFEKTS-FMLFLNKFDIFE 302 (392)
Q Consensus 278 ~~i~~~~~~~~~~-iiL~~NK~Dl~~ 302 (392)
.. .++| +|+++||+|+..
T Consensus 311 ~~-------lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 311 RA-------LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp HH-------SSCCCEEEEEECGGGGT
T ss_pred HH-------cCCCeEEEEEecccccc
Confidence 11 1344 999999999864
No 180
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.33 E-value=1.5e-06 Score=83.19 Aligned_cols=100 Identities=10% Similarity=0.183 Sum_probs=65.6
Q ss_pred CccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccC
Q 016253 230 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP 309 (392)
Q Consensus 230 Gq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~ 309 (392)
+|++++.+...|+++++++++|+|+++-+ .+.+.+..++...+. .++|++|++||+|+..+..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~------~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~~~---- 127 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPE------FNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNEEE---- 127 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTT------CCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHHH----
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCC------CCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCccc----
Confidence 48889999999999999999999986321 123344444443322 3689999999999864310
Q ss_pred ccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 310 LNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 310 l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
. ...++..++ +... .+.+++|||+++.||+++|+.+.
T Consensus 128 v----------------~~~~~~~~~----~~~~------------g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 128 K----------------KELERWISI----YRDA------------GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp H----------------HHHHHHHHH----HHHT------------TCEEEECCTTTCTTHHHHHHHTT
T ss_pred c----------------HHHHHHHHH----HHHC------------CCeEEEEECCCCCCHHHHHhhcc
Confidence 0 001222222 2211 14568899999999999997764
No 181
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.32 E-value=1.2e-06 Score=81.24 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=51.4
Q ss_pred cccccceeEEecCCc--------cccccchhccc----cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCC
Q 016253 217 KKSGEVYRLFDVGGQ--------RNERRKWIHLF----EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq--------~~~r~~w~~yf----~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~ 284 (392)
...+..+.+|||+|. +.+...+..++ ++++++|+|+|++.+.. .-...++++..++..
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~---------~~~~~~~~l~~~~~~- 135 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA---------QDQQAVRQVRDMFGE- 135 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH---------HHHHHHHHHHHHHCG-
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH---------HHHHHHHHHHHHhCh-
Confidence 344568999999997 44444444444 89999999999864321 112345555555542
Q ss_pred CCCCceEEEEeeCCCCccc
Q 016253 285 CFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 285 ~~~~~~iiL~~NK~Dl~~~ 303 (392)
...+.|++||+||.|+..+
T Consensus 136 ~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 136 DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp GGGGGEEEEEECGGGGTTC
T ss_pred hhhccEEEEEEchHhcCCC
Confidence 2336899999999998643
No 182
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.32 E-value=1.8e-06 Score=77.92 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=40.3
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|.++++||+|+..++. ...+++.+++... .....+++|||+++.
T Consensus 165 ~~~iiv~NK~Dl~~~~~---------------------~~~~~~~~~~~~~--------------~~~~~~~~~Sa~~g~ 209 (226)
T 2hf9_A 165 TADLIVINKIDLADAVG---------------------ADIKKMENDAKRI--------------NPDAEVVLLSLKTME 209 (226)
T ss_dssp TCSEEEEECGGGHHHHT---------------------CCHHHHHHHHHHH--------------CTTSEEEECCTTTCT
T ss_pred cCCEEEEeccccCchhH---------------------HHHHHHHHHHHHh--------------CCCCeEEEEEecCCC
Confidence 68899999999854310 1234444444321 012456789999999
Q ss_pred hHHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETLR 382 (392)
Q Consensus 369 nI~~vF~~v~~~Il 382 (392)
||+++|+.+.+.+.
T Consensus 210 gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 210 GFDKVLEFIEKSVK 223 (226)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.28 E-value=2e-06 Score=90.97 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=53.5
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..+.+.+++|||+|++.++..+..+++.++++++|+|.++-.+ .....++..+.. .++|+++++|
T Consensus 70 ~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~-----------~qt~~~~~~~~~----~~ip~ilv~N 134 (665)
T 2dy1_A 70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQ-----------VGTERAWTVAER----LGLPRMVVVT 134 (665)
T ss_dssp EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSC-----------HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccc-----------hhHHHHHHHHHH----ccCCEEEEec
Confidence 3456789999999999999999999999999999999753111 122344444433 2689999999
Q ss_pred CCCCc
Q 016253 297 KFDIF 301 (392)
Q Consensus 297 K~Dl~ 301 (392)
|+|+.
T Consensus 135 KiD~~ 139 (665)
T 2dy1_A 135 KLDKG 139 (665)
T ss_dssp CGGGC
T ss_pred CCchh
Confidence 99986
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.25 E-value=2.1e-06 Score=91.26 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=55.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.+|||+|+..+...|..+++.++++|+|+|.++-.+ ......|..+.. .+.|+++|+|
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-----------~~~~~~~~~~~~----~~~p~ilviN 135 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-----------PQTETVWRQATT----YGVPRIVFVN 135 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-----------HHHHHHHHHHHH----TTCCEEEEEE
T ss_pred EECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-----------HHHHHHHHHHHH----cCCCEEEEEE
Confidence 4456789999999999999999999999999999999864211 123344444433 2689999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+...
T Consensus 136 K~Dl~~~ 142 (693)
T 2xex_A 136 KMDKLGA 142 (693)
T ss_dssp CTTSTTC
T ss_pred CCCcccc
Confidence 9999764
No 185
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.24 E-value=1.9e-06 Score=84.70 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=71.8
Q ss_pred CCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcccccccc
Q 016253 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKV 308 (392)
Q Consensus 229 gGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~ 308 (392)
..|+.|++.+.+++++++.+++|+|+++++..+. ..+ ... +.+.|+++++||+|+....
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~-----~~l-------~~~-----l~~~piilV~NK~DLl~~~---- 114 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFI-----PGL-------PRF-----AADNPILLVGNKADLLPRS---- 114 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGCC-----SSH-------HHH-----CTTSCEEEEEECGGGSCTT----
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCchh-----hHH-------HHH-----hCCCCEEEEEEChhcCCCc----
Confidence 4699999999999999999999999988764221 112 122 2368999999999996431
Q ss_pred CccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHH
Q 016253 309 PLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381 (392)
Q Consensus 309 ~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~I 381 (392)
...+...+|+...+.... -+...++.+||+++.+++.+++.+.+..
T Consensus 115 ------------------~~~~~~~~~l~~~~~~~g---------~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 115 ------------------VKYPKLLRWMRRMAEELG---------LCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTT---------CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ------------------cCHHHHHHHHHHHHHHcC---------CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 123455566665554321 1123567899999999999999887543
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.17 E-value=2.3e-06 Score=81.66 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=48.2
Q ss_pred ccccceeEEecCCcc---------ccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 218 KSGEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~---------~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
..+..+.+|||+|+. .++..+..+++.+++++||+|.+++. ..+ ..+++.+.. .+
T Consensus 53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~-----~~~-------~~i~~~l~~----~~ 116 (301)
T 1ega_A 53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-----PDD-------EMVLNKLRE----GK 116 (301)
T ss_dssp ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC-----HHH-------HHHHHHHHS----SS
T ss_pred ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-----HHH-------HHHHHHHHh----cC
Confidence 345689999999997 34556678899999999999985411 111 122333322 36
Q ss_pred ceEEEEeeCCCCcc
Q 016253 289 TSFMLFLNKFDIFE 302 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~ 302 (392)
.|++|++||+|+..
T Consensus 117 ~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 117 APVILAVNKVDNVQ 130 (301)
T ss_dssp SCEEEEEESTTTCC
T ss_pred CCEEEEEECcccCc
Confidence 89999999999864
No 187
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.17 E-value=6e-07 Score=84.78 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=47.7
Q ss_pred ccceeEEecCCcc-------------ccccchhccccccCEEE-EEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 220 GEVYRLFDVGGQR-------------NERRKWIHLFEGVSAVI-FCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 220 ~~~l~i~DvgGq~-------------~~r~~w~~yf~~~~~ii-fv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
...+.+|||+|+. .++..+..|+++++++| +|+|.+.- .... +...+++.+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~---~~~~~~~~~~---- 189 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-------LANS---DALKIAKEVD---- 189 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC-------GGGC---HHHHHHHHHC----
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc-------hhhh---HHHHHHHHhC----
Confidence 4689999999974 45677888999998777 78887531 1111 2223344332
Q ss_pred CCCceEEEEeeCCCCccc
Q 016253 286 FEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~ 303 (392)
..+.|+++++||+|+..+
T Consensus 190 ~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 190 PQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp TTCSSEEEEEECGGGSCT
T ss_pred CCCCeEEEEEEccccCCC
Confidence 136899999999999753
No 188
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.12 E-value=2.5e-06 Score=83.85 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=70.4
Q ss_pred CccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccC
Q 016253 230 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVP 309 (392)
Q Consensus 230 Gq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~ 309 (392)
.++.|++.+.+++++++++++|+|+++++.. +...+.+.+ .+.|+++++||+|+..+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~------------~~~~l~~~~-----~~~p~ilV~NK~DL~~~~----- 112 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGS------------WLPGLHRFV-----GNNKVLLVGNKADLIPKS----- 112 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHH------------CCTTHHHHS-----SSSCEEEEEECGGGSCTT-----
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCccc------------HHHHHHHHh-----CCCcEEEEEEChhcCCcc-----
Confidence 5688999999999999999999999764321 111222332 368999999999996431
Q ss_pred ccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHH
Q 016253 310 LNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 310 l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
...+...+|+...+.... -+...++.+||+++.||+++++.+.+.
T Consensus 113 -----------------~~~~~~~~~l~~~~~~~g---------~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 113 -----------------VKHDKVKHWMRYSAKQLG---------LKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTT---------CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----------------cCHHHHHHHHHHHHHHcC---------CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 123445566655444321 112356789999999999999988653
No 189
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.11 E-value=3.3e-06 Score=86.96 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=54.8
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
..++..+.+|||+|++.++..+..+++.++++|+|+|.++-.+ .....++... . ..++|+++|+|
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~-----------~~t~~~~~~~-~---~~~ipiivviN 142 (529)
T 2h5e_A 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE-----------DRTRKLMEVT-R---LRDTPILTFMN 142 (529)
T ss_dssp EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC-----------HHHHHHHHHH-T---TTTCCEEEEEE
T ss_pred EECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch-----------HHHHHHHHHH-H---HcCCCEEEEEc
Confidence 5667899999999999999999999999999999999864211 1223333333 2 23689999999
Q ss_pred CCCCccc
Q 016253 297 KFDIFEK 303 (392)
Q Consensus 297 K~Dl~~~ 303 (392)
|+|+...
T Consensus 143 K~Dl~~~ 149 (529)
T 2h5e_A 143 KLDRDIR 149 (529)
T ss_dssp CTTSCCS
T ss_pred CcCCccc
Confidence 9999754
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.96 E-value=3.4e-05 Score=68.45 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=66.0
Q ss_pred ceeEEecCCccc----------cccchhccc---cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCC
Q 016253 222 VYRLFDVGGQRN----------ERRKWIHLF---EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288 (392)
Q Consensus 222 ~l~i~DvgGq~~----------~r~~w~~yf---~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~ 288 (392)
.+.+||++|+.. +++....|+ +.++++++|+|++..... ... +...+.. ..+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-----~~~---~~~~~~~-------~~~ 137 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD-----LDQ---QMIEWAV-------DSN 137 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-----HHH---HHHHHHH-------HTT
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch-----hHH---HHHHHHH-------HcC
Confidence 688999999843 233334555 468899999998642110 001 1112221 125
Q ss_pred ceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCch
Q 016253 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPK 368 (392)
Q Consensus 289 ~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~ 368 (392)
.|+++++||+|+....... ..+..+..++. + ....+....|||+|+.
T Consensus 138 ~~~~~v~nK~D~~s~~~~~-------------------~~~~~~~~~~~----~----------~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 138 IAVLVLLTKADKLASGARK-------------------AQLNMVREAVL----A----------FNGDVQVETFSSLKKQ 184 (210)
T ss_dssp CCEEEEEECGGGSCHHHHH-------------------HHHHHHHHHHG----G----------GCSCEEEEECBTTTTB
T ss_pred CCeEEEEecccCCCchhHH-------------------HHHHHHHHHHH----h----------cCCCCceEEEeecCCC
Confidence 7899999999975421000 01223333221 1 1123556789999999
Q ss_pred hHHHHHHHHHHHH
Q 016253 369 LVKKTFKLVDETL 381 (392)
Q Consensus 369 nI~~vF~~v~~~I 381 (392)
+++++|+.+.+.+
T Consensus 185 ~~~~l~~~l~~~~ 197 (210)
T 1pui_A 185 GVDKLRQKLDTWF 197 (210)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988765
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.94 E-value=6.3e-06 Score=89.36 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=54.7
Q ss_pred cccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEee
Q 016253 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLN 296 (392)
Q Consensus 217 ~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~N 296 (392)
+.+++.++||||+|+..|+..|..+++.++++|+|+|.++-.+ ......|..... .++|+++|+|
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-----------~qt~~~~~~~~~----~~~p~ilviN 158 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-----------VQTETVLRQALG----ERIKPVVVIN 158 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-----------HHHHHHHHHHHH----TTCEEEEEEE
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-----------HHHHHHHHHHHH----cCCCeEEEEE
Confidence 3456889999999999999999999999999999999864221 122344444443 2689999999
Q ss_pred CCCCcc
Q 016253 297 KFDIFE 302 (392)
Q Consensus 297 K~Dl~~ 302 (392)
|+|+..
T Consensus 159 K~D~~~ 164 (842)
T 1n0u_A 159 KVDRAL 164 (842)
T ss_dssp CHHHHH
T ss_pred CCCcch
Confidence 999873
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.90 E-value=1.3e-05 Score=73.96 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=41.9
Q ss_pred cceeEEecCCccccccchh------ccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEE
Q 016253 221 EVYRLFDVGGQRNERRKWI------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLF 294 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~------~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~ 294 (392)
+.+.+|||+|+......+. .++.+ ..+|+|+|.+... +...+............. .+.|++++
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~-------~~~~~~~~~~~~~~~~~~---~~~p~~iv 177 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILK-------KPNDYCFVRFFALLIDLR---LGATTIPA 177 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCC-------SHHHHHHHHHHHHHHHHH---HTSCEEEE
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhc-------CHHHHHHHHHHHHHHhcc---cCCCeEEE
Confidence 4788999999976544322 24566 8999999864221 111222211111111111 24799999
Q ss_pred eeCCCCccc
Q 016253 295 LNKFDIFEK 303 (392)
Q Consensus 295 ~NK~Dl~~~ 303 (392)
+||+|+...
T Consensus 178 ~NK~D~~~~ 186 (262)
T 1yrb_A 178 LNKVDLLSE 186 (262)
T ss_dssp ECCGGGCCH
T ss_pred Eeccccccc
Confidence 999998643
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.78 E-value=7.7e-05 Score=66.82 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=64.8
Q ss_pred cceeEEecCCccccccchhccc-cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCC
Q 016253 221 EVYRLFDVGGQRNERRKWIHLF-EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r~~w~~yf-~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~D 299 (392)
..+.+|||+|+-. -+.+| .+.+.+|+|+|.+..+. .+. .+.... +.|+++++||+|
T Consensus 109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~---------~~~----~~~~~~------~~~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD---------VVE----KHPEIF------RVADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT---------HHH----HCHHHH------HTCSEEEEECGG
T ss_pred CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcch---------hhh----hhhhhh------hcCCEEEEeccc
Confidence 4678999999721 12222 36788999999864321 111 111111 368899999999
Q ss_pred CccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHH
Q 016253 300 IFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379 (392)
Q Consensus 300 l~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~ 379 (392)
+.... + .+.++..+++... . ....++.+||+++.|++.+|+.+.+
T Consensus 166 l~~~~--------------------~-~~~~~~~~~~~~~----~----------~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 166 LAEAV--------------------G-ADVEKMKADAKLI----N----------PRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp GHHHH--------------------T-CCHHHHHHHHHHH----C----------TTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCcch--------------------h-hHHHHHHHHHHHh----C----------CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 85421 0 1234444544321 0 1245678999999999999999988
Q ss_pred HHHH
Q 016253 380 TLRR 383 (392)
Q Consensus 380 ~Il~ 383 (392)
.+..
T Consensus 211 ~~~~ 214 (221)
T 2wsm_A 211 ILNV 214 (221)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 7643
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.70 E-value=0.00016 Score=70.41 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=69.2
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
..++.+.||||+|-.. -.....+.++.+|+|+|.+.-++. ..+ . ....+.|+++++||
T Consensus 169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~-------~~l-----------~-~~~~~~p~ivVlNK 226 (355)
T 3p32_A 169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL-------QGI-----------K-KGVLELADIVVVNK 226 (355)
T ss_dssp HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT-------TTC-----------C-TTSGGGCSEEEEEC
T ss_pred hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH-------HHH-----------H-HhHhhcCCEEEEEC
Confidence 3456889999999532 233345889999999996532221 000 0 11234699999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+..+ .+.+...+.+...+.... .. .......++.+||+++++|+++++.+
T Consensus 227 ~Dl~~~-----------------------~~~~~~~~~l~~~l~~~~----~~-~~~~~~~vi~iSA~~g~Gi~~L~~~i 278 (355)
T 3p32_A 227 ADGEHH-----------------------KEARLAARELSAAIRLIY----PR-EALWRPPVLTMSAVEGRGLAELWDTV 278 (355)
T ss_dssp CCGGGH-----------------------HHHHHHHHHHHHHHHHHS----TT-CCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred CCCcCh-----------------------hHHHHHHHHHHHHHhhcc----cc-ccCCCCceEEEEcCCCCCHHHHHHHH
Confidence 998532 112223333333332221 00 00112346789999999999999999
Q ss_pred HHHHH
Q 016253 378 DETLR 382 (392)
Q Consensus 378 ~~~Il 382 (392)
.+.+-
T Consensus 279 ~~~~~ 283 (355)
T 3p32_A 279 ERHRQ 283 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.62 E-value=0.00024 Score=73.35 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=60.4
Q ss_pred cceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHH
Q 016253 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278 (392)
Q Consensus 199 r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~ 278 (392)
|.-|+......| ..++..++|.||.|+-.|..=...-.+-++++|+|+|-. .--...+...|+
T Consensus 84 RGITI~s~~~~~------~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~-----------~GV~~qT~~v~~ 146 (548)
T 3vqt_A 84 RGISVTTSVMQF------PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAA-----------KGVEAQTRKLMD 146 (548)
T ss_dssp ----CTTTEEEE------EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETT-----------TBSCHHHHHHHH
T ss_pred CCCcEeeceEEE------EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecC-----------CCcccccHHHHH
Confidence 344444344556 677889999999999888777777788899999999963 222335566676
Q ss_pred HHHcCCCCCCceEEEEeeCCCCccc
Q 016253 279 WVLKQPCFEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 279 ~i~~~~~~~~~~iiL~~NK~Dl~~~ 303 (392)
..... ++|+++|.||+|....
T Consensus 147 ~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 147 VCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHT----TCCEEEEEECTTSCCC
T ss_pred HHHHh----CCceEEEEecccchhc
Confidence 66543 6899999999998764
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.59 E-value=2.8e-05 Score=74.18 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred cccceeEEecCCc-------cccccchh-------ccccccCE-------------EEEEEEcc-c-ccccccchhhhhh
Q 016253 219 SGEVYRLFDVGGQ-------RNERRKWI-------HLFEGVSA-------------VIFCAAIS-E-YDQTLFEDEQKNR 269 (392)
Q Consensus 219 ~~~~l~i~DvgGq-------~~~r~~w~-------~yf~~~~~-------------iifv~dls-~-yd~~l~e~~~~nr 269 (392)
....+++||++|+ +.++.++. .|+++..+ ++|+.+-+ . +|.
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~---------- 143 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKP---------- 143 (301)
T ss_dssp CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCH----------
T ss_pred cccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCH----------
Confidence 3457999999999 77777776 77766543 55554421 1 221
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 016253 270 MMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTA 349 (392)
Q Consensus 270 l~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~ 349 (392)
.. .+++..+. .++++++++||.|+...+... ...+++.+++..
T Consensus 144 ~~--~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~-------------------~~~~~~~~~~~~----------- 186 (301)
T 2qnr_A 144 LD--VAFMKAIH-----NKVNIVPVIAKADTLTLKERE-------------------RLKKRILDEIEE----------- 186 (301)
T ss_dssp HH--HHHHHHHT-----TTSCEEEEECCGGGSCHHHHH-------------------HHHHHHHHHHHH-----------
T ss_pred HH--HHHHHHHH-----hcCCEEEEEEeCCCCCHHHHH-------------------HHHHHHHHHHHH-----------
Confidence 11 23344432 257999999999986431100 012233333321
Q ss_pred CCCCCcceeEEEEEeeCchhHHHHHHHHHHHHHH
Q 016253 350 PDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRR 383 (392)
Q Consensus 350 ~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il~ 383 (392)
..+.+++|||+++ |++++|..+.+.+..
T Consensus 187 -----~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 187 -----HNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp -----TTCCCCCCC----------CHHHHHHHHT
T ss_pred -----cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 1245678999999 999999999888753
No 197
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.47 E-value=0.00045 Score=68.85 Aligned_cols=114 Identities=12% Similarity=0.206 Sum_probs=67.5
Q ss_pred cceeEEecCCccc----cccchhccc---cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEE
Q 016253 221 EVYRLFDVGGQRN----ERRKWIHLF---EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFML 293 (392)
Q Consensus 221 ~~l~i~DvgGq~~----~r~~w~~yf---~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL 293 (392)
..+.+||+.|... .+.++..++ +.++.+++|+|++ +. ....+.........+. +.+.+.|.+|
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~------~~~~ls~g~~el~~la--~aL~~~P~IL 274 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DE------PLKTLETLRKEVGAYD--PALLRRPSLV 274 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SC------HHHHHHHHHHHHHHHC--HHHHHSCEEE
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cC------CHHHHHHHHHHHHHHh--HHhhcCCEEE
Confidence 5789999999843 223333333 4689999999985 11 1122222222222221 1123468899
Q ss_pred EeeCCCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHH
Q 016253 294 FLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKT 373 (392)
Q Consensus 294 ~~NK~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~v 373 (392)
++||+|+... . ..++ +.+.+. ...+.++.+||+++++|+++
T Consensus 275 VlNKlDl~~~-~----------------------~~~~----l~~~l~------------~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 275 ALNKVDLLEE-E----------------------AVKA----LADALA------------REGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEECCTTSCH-H----------------------HHHH----HHHHHH------------TTTSCEEECCTTTCTTHHHH
T ss_pred EEECCChhhH-H----------------------HHHH----HHHHHH------------hcCCeEEEEECCCccCHHHH
Confidence 9999998532 0 0111 111111 11244678999999999999
Q ss_pred HHHHHHHHHH
Q 016253 374 FKLVDETLRR 383 (392)
Q Consensus 374 F~~v~~~Il~ 383 (392)
|+.+.+.+..
T Consensus 316 ~~~i~~~l~~ 325 (416)
T 1udx_A 316 KEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 198
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.43 E-value=9.4e-05 Score=70.21 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=48.8
Q ss_pred cccceeEEecCCccc-------------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 219 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~-------------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
....+.+|||+|... ++..+..|+++++++|+|+|.+.-+. ... +...+++.+ ..
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~------~~~---~~~~i~~~~-~~-- 196 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL------ANS---DALQLAKEV-DP-- 196 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS------TTC---SHHHHHHHH-CS--
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch------hhh---HHHHHHHHh-CC--
Confidence 456899999999864 56678889999999999999743221 001 112223333 21
Q ss_pred CCCceEEEEeeCCCCccc
Q 016253 286 FEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~ 303 (392)
.+.|+++++||+|+...
T Consensus 197 -~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp -SCSSEEEEEECTTSSCS
T ss_pred -CCCcEEEEEcCcccCCc
Confidence 36899999999999754
No 199
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.41 E-value=3.1e-05 Score=75.39 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=44.5
Q ss_pred ccceeEEecCCcc-------------ccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCC
Q 016253 220 GEVYRLFDVGGQR-------------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286 (392)
Q Consensus 220 ~~~l~i~DvgGq~-------------~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~ 286 (392)
...+.+|||+|.. ..+.++..|+++.+.+|+++.-+.-+ ... .++..+++.+. .
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--------~~~-~~~~~i~~~~~----~ 195 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LAN-SDALKVAKEVD----P 195 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--------GGG-CHHHHHHHHHC----T
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--------cch-hHHHHHHHHhC----c
Confidence 4689999999963 34567788888877666655322111 110 12233444442 1
Q ss_pred CCceEEEEeeCCCCccc
Q 016253 287 EKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 287 ~~~~iiL~~NK~Dl~~~ 303 (392)
.+.|+++|+||+|+..+
T Consensus 196 ~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp TCTTEEEEEECGGGSCT
T ss_pred CCCceEEEeccccccCc
Confidence 36899999999999753
No 200
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.36 E-value=0.00012 Score=71.25 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=51.6
Q ss_pred cccceeEEecCCcccc-------------ccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 219 SGEVYRLFDVGGQRNE-------------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~-------------r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
....+.+|||+|+... +.+...|+++++++|+|+|.+.-+.. ..+++.+...+.
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~---------~~~~~~l~~~~~---- 200 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA---------TSDAIKISREVD---- 200 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG---------GCHHHHHHHHSC----
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC---------CHHHHHHHHHhc----
Confidence 3457999999999887 77888999999999999986422111 123344444432
Q ss_pred CCCceEEEEeeCCCCccc
Q 016253 286 FEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~ 303 (392)
..+.|+++++||+|+..+
T Consensus 201 ~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 201 PSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp TTCTTEEEEEECGGGCCT
T ss_pred ccCCCEEEEEeCCccCCC
Confidence 235799999999999754
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.30 E-value=0.00049 Score=66.62 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=63.3
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
..++.+.+|||+|....... ..+.++++++|+|.+..+.. ..+.. .. .+.|.++|+||
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK 203 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINK 203 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECC
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEEC
Confidence 45678999999997544332 35899999999997643321 00000 01 13688999999
Q ss_pred CCCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHH
Q 016253 298 FDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLV 377 (392)
Q Consensus 298 ~Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v 377 (392)
+|+.... ++....+.+...+..+ ... .......++.+||+++++++.+++.+
T Consensus 204 ~Dl~~~~-----------------------~~~~~~~~l~~~l~~~----~~~-~~~~~~~vi~iSA~~g~gi~~L~~~l 255 (341)
T 2p67_A 204 DDGDNHT-----------------------NVAIARHMYESALHIL----RRK-YDEWQPRVLTCSALEKRGIDEIWHAI 255 (341)
T ss_dssp CCTTCHH-----------------------HHHHHHHHHHHHHHHS----CCS-BTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred CCCCChH-----------------------HHHHHHHHHHHHHHhc----ccc-ccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence 9985421 1222222222222211 000 00001245678999999999888888
Q ss_pred HHHH
Q 016253 378 DETL 381 (392)
Q Consensus 378 ~~~I 381 (392)
.+.+
T Consensus 256 ~~~~ 259 (341)
T 2p67_A 256 IDFK 259 (341)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7755
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.28 E-value=0.00045 Score=68.87 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=4.2
Q ss_pred eeEEEEEeeCchhHHHHHHHHHHH
Q 016253 357 FKIYRTTALDPKLVKKTFKLVDET 380 (392)
Q Consensus 357 ~~~~~TsA~d~~nI~~vF~~v~~~ 380 (392)
+.++.+||+++.++..+|..+.+.
T Consensus 201 i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 201 IKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp CCCCCCC-----------------
T ss_pred CeEEeCCCCCCcCHHHHHHHHHhh
Confidence 334678888888888888776654
No 203
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.06 E-value=0.00035 Score=69.19 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=24.4
Q ss_pred ccceeEEecCCccc----cccch---hccccccCEEEEEEEcccc
Q 016253 220 GEVYRLFDVGGQRN----ERRKW---IHLFEGVSAVIFCAAISEY 257 (392)
Q Consensus 220 ~~~l~i~DvgGq~~----~r~~w---~~yf~~~~~iifv~dls~y 257 (392)
.+.+++|||+|+.. .+.++ ..++++++++++|+|.++-
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 46799999999853 33333 3567999999999998753
No 204
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.05 E-value=0.00026 Score=73.13 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=48.6
Q ss_pred cceeEEecCCccc-----------cccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCc
Q 016253 221 EVYRLFDVGGQRN-----------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289 (392)
Q Consensus 221 ~~l~i~DvgGq~~-----------~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~ 289 (392)
..+.+|||.|+.. +...+..+++++++||||+|.+..+. ..+...+++.+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~----------~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI----------SDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC----------CHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC----------CHHHHHHHHHHHh----cCC
Confidence 3689999999875 55778889999999999999854221 1122333433321 257
Q ss_pred eEEEEeeCCCCcc
Q 016253 290 SFMLFLNKFDIFE 302 (392)
Q Consensus 290 ~iiL~~NK~Dl~~ 302 (392)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999974
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.03 E-value=0.00028 Score=74.14 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=67.0
Q ss_pred CCCCCcccceeccceeeeeEEEeeccCCCccccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhh
Q 016253 187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ 266 (392)
Q Consensus 187 ~y~PT~~Dil~~r~~T~Gi~e~~f~~~~~~~~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~ 266 (392)
||.|-+ +.|.-|+-.....| ..++..++|.||.|+..|..-...-.+-+|++|+|+|..+ .
T Consensus 43 D~~~~E----reRGITI~s~~~~~------~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~---------G 103 (638)
T 3j25_A 43 DNTLLE----RQRGITIQTGITSF------QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD---------G 103 (638)
T ss_dssp TCSTTH----HHHSSCSSCCCCCC------BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC---------T
T ss_pred CCcHHH----HhCCCcEEeeeEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC---------C
Confidence 455544 34556665555566 7788899999999999988888888889999999999642 1
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcccc
Q 016253 267 KNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKK 304 (392)
Q Consensus 267 ~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~k 304 (392)
. ...+...|+..... ++|.++|.||+|.....
T Consensus 104 V--~~qT~~v~~~a~~~----~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 104 V--QAQTRILFHALRKM----GIPTIFFINKIDQNGID 135 (638)
T ss_dssp T--CSHHHHHHHHHHHH----TCSCEECCEECCSSSCC
T ss_pred C--cHHHHHHHHHHHHc----CCCeEEEEeccccccCC
Confidence 1 12344556655443 68999999999987653
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.71 E-value=0.0017 Score=61.18 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=61.4
Q ss_pred EecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCccccc
Q 016253 226 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKV 305 (392)
Q Consensus 226 ~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~~kl 305 (392)
|--|.....++.+......+++|++|+|..+-.. ..+ . .+..++ .+.|.++++||+|+....
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~------~~~---~---~l~~~l-----~~kp~ilVlNK~DL~~~~- 66 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMS------SRN---P---MIEDIL-----KNKPRIMLLNKADKADAA- 66 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTT------TSC---H---HHHHHC-----SSSCEEEEEECGGGSCHH-
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc------cCC---H---HHHHHH-----CCCCEEEEEECcccCCHH-
Confidence 3333344666677778899999999999853211 111 0 122222 468999999999986421
Q ss_pred cccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHHHHHH
Q 016253 306 LKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLR 382 (392)
Q Consensus 306 ~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~~~Il 382 (392)
..+...+| |.+ ..+.++++||+++.+++.+++.+.+.+-
T Consensus 67 ----------------------~~~~~~~~----~~~------------~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 ----------------------VTQQWKEH----FEN------------QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ----------------------HHHHHHHH----HHT------------TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ----------------------HHHHHHHH----HHh------------cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 11222222 211 1134668999999999999988877664
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.66 E-value=0.0031 Score=61.19 Aligned_cols=113 Identities=10% Similarity=-0.017 Sum_probs=60.6
Q ss_pred cccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCC
Q 016253 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 298 (392)
Q Consensus 219 ~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~ 298 (392)
.+..+.++||+|-. .-+....+.++.+++|+|.+..+. ... ....+ .+.|.++++||+
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~~~----------~~~---i~~~i------l~~~~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGGDE----------LQG---IKRGI------IEMADLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcchh----------HHH---hHHHH------HhcCCEEEEeee
Confidence 45678999999953 234556789999999999753210 000 00111 135789999999
Q ss_pred CCccccccccCccccccccccccCCCCcccHHHHHHHHHHHHHHHhhccCCCCCCCcceeEEEEEeeCchhHHHHHHHHH
Q 016253 299 DIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378 (392)
Q Consensus 299 Dl~~~kl~~~~l~~~~~f~~y~~~~~g~~~~~~~~~~i~~~f~~~~~~~~~~~~~~r~~~~~~TsA~d~~nI~~vF~~v~ 378 (392)
|+.... ........+....... .+.. ......++.|||+++++++.+++.+.
T Consensus 223 Dl~~~~-----------------------~~~~~~~~l~~~l~~~----~~~a-~~~~~~vi~iSA~~g~Gi~~L~~~I~ 274 (349)
T 2www_A 223 DGDLIV-----------------------PARRIQAEYVSALKLL----RKRS-QVWKPKVIRISARSGEGISEMWDKMK 274 (349)
T ss_dssp SGGGHH-----------------------HHHHHHHHHHHHHTTC----C------CCCEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCch-----------------------hHHHHHHHHHHHHHhc----Cccc-cCCCceEEEEecCCCCCHHHHHHHHH
Confidence 985320 0111111111111000 0000 00012356699999999999999888
Q ss_pred HHH
Q 016253 379 ETL 381 (392)
Q Consensus 379 ~~I 381 (392)
+.+
T Consensus 275 ~~~ 277 (349)
T 2www_A 275 DFQ 277 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.85 E-value=0.0032 Score=54.32 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=16.4
Q ss_pred ceEEeccCCCchhHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQ 66 (392)
Q Consensus 49 killlG~~~sGKST~~kq 66 (392)
-+.|+|++||||||++|.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999996
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.85 E-value=0.0033 Score=54.60 Aligned_cols=23 Identities=48% Similarity=0.439 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|++||||||++|.+.-..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58899999999999999985443
No 210
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.85 E-value=0.028 Score=54.89 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=28.9
Q ss_pred cceeEEecCCccccc-------cchhccccccCEEEEEEEccc
Q 016253 221 EVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE 256 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r-------~~w~~yf~~~~~iifv~dls~ 256 (392)
..+++|||+|+.... ..+..++++++++++|+|.++
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 468999999997643 234556899999999999975
No 211
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.83 E-value=0.0035 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
++.|+|++||||||++|.+--+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999885443
No 212
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.80 E-value=0.0037 Score=54.04 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=19.0
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+|+|.+|+|||||++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999986
No 213
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.74 E-value=0.0046 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||+++.+.-.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999986554
No 214
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.73 E-value=0.0049 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+.-++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999986555
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.67 E-value=0.027 Score=54.93 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=28.9
Q ss_pred cceeEEecCCccccc-------cchhccccccCEEEEEEEccc
Q 016253 221 EVYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISE 256 (392)
Q Consensus 221 ~~l~i~DvgGq~~~r-------~~w~~yf~~~~~iifv~dls~ 256 (392)
..+++|||+|+.... ..+..++++++++++|+|.++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 468899999998753 234456899999999999986
No 216
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.64 E-value=0.0045 Score=51.93 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=19.4
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+++|.+++|||||++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 579999999999999999876
No 217
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.63 E-value=0.0046 Score=54.26 Aligned_cols=23 Identities=9% Similarity=0.333 Sum_probs=19.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||+++.+.-++
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999875443
No 218
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.54 E-value=0.014 Score=61.96 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=54.7
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeC
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK 297 (392)
.+++.++|.||.|+-.|..=-..-.+-+|++|+|+|..+ --...+...|+..... +.|+++|.||
T Consensus 82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~v~~~a~~~----~lp~i~~iNK 146 (709)
T 4fn5_A 82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSETVWRQANKY----GVPRIVYVNK 146 (709)
T ss_dssp SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHHH----TCCEEEEEEC
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCeEEEEcc
Confidence 346889999999998888777777888999999999642 1122445566666553 6899999999
Q ss_pred CCCccc
Q 016253 298 FDIFEK 303 (392)
Q Consensus 298 ~Dl~~~ 303 (392)
+|....
T Consensus 147 iDr~~a 152 (709)
T 4fn5_A 147 MDRQGA 152 (709)
T ss_dssp SSSTTC
T ss_pred ccccCc
Confidence 998754
No 219
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.51 E-value=0.0055 Score=52.27 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
.|.|+|++||||||+++.+.-.++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999866543
No 220
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.51 E-value=0.0065 Score=53.98 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=21.8
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
+-..+.|+|++||||||++|.+.-++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999986555
No 221
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.45 E-value=0.0069 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.0
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
+.|+|++||||||++|.+.-++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999986554
No 222
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.45 E-value=0.0056 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.0
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
..|++|+|.+|+|||||++++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999873
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.38 E-value=0.0066 Score=51.31 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=17.6
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-|+|.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999999998
No 224
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.37 E-value=0.0061 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.4
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
+.+||+|+|.+|+|||||++++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35799999999999999999873
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.36 E-value=0.0066 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.3
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-++|+|++||||||++|.+.-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 368899999999999999853
No 226
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.32 E-value=0.0072 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.|+|.|++||||||+.+.+.-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998543
No 227
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.31 E-value=0.0065 Score=55.87 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.4
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
....|+|+|++||||||+.+.+.-.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999986544
No 228
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.30 E-value=0.0076 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.5
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-|+|.|.+||||||+.+.+.-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478899999999999999864
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.28 E-value=0.007 Score=54.66 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.3
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++||||||+++++-
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 230
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.27 E-value=0.0073 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--++
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999985554
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.26 E-value=0.0074 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||+++.+.-.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999986544
No 232
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.20 E-value=0.0078 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.1
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|++||||||++|.+.-.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998543
No 233
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.20 E-value=0.0093 Score=52.74 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.5
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~ 72 (392)
..+.|+|++||||||++|.+.-++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999976654
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.18 E-value=0.011 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||+++.+.-.+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 37788999999999999986554
No 235
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.15 E-value=0.015 Score=53.06 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=22.3
Q ss_pred hhhcceEEeccCCCchhHHHHHHHHhh
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
++..+|+|.|++||||||+.+.+.--+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999985433
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.15 E-value=0.0099 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
-|+|.|.+||||||+.|.+.-...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999865443
No 237
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.15 E-value=0.0082 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.3
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
-.++|+|++||||||++|.+.--+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999986333
No 238
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.14 E-value=0.0068 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.5
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
+.+||+++|.+++|||||++++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999998863
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.10 E-value=0.0087 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999985444
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.09 E-value=0.009 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.++|+|++||||||+++.+.-.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5889999999999999988543
No 241
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.08 E-value=0.0077 Score=52.10 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.6
Q ss_pred HhhhcceEEeccCCCchhHHHHHH
Q 016253 44 EKHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 44 ~~~~~killlG~~~sGKST~~kq~ 67 (392)
.++.+||+|+|.+++|||||++++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l 42 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVI 42 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHH
Confidence 356789999999999999999987
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.08 E-value=0.0093 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|+.|||||||+|.+--+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999885443
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.06 E-value=0.009 Score=53.97 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++|||||||+|.+.-++
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999885554
No 244
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.06 E-value=0.0083 Score=56.00 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
+.+.|+|++||||||++|.+--+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999986554
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.06 E-value=0.01 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+.-++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999986554
No 246
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.02 E-value=0.0091 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.4
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
++.+||+++|.+++|||||++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999886
No 247
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.02 E-value=0.0097 Score=51.01 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.2
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+||+++|.+++|||||++++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 689999999999999999863
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.01 E-value=0.0097 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.5
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
..|+|.|.+||||||+++.+.-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988543
No 249
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.00 E-value=0.0089 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
..+||+++|.+++|||||++.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999863
No 250
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.0093 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.5
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
++.+||+++|.+++|||||++++.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999998863
No 251
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.00 E-value=0.0098 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.0
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
.-|.|+|.+||||||++|.+.-
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588899999999999999843
No 252
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.98 E-value=0.0097 Score=52.97 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-+.|+|++||||||+++++--
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999954
No 253
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.98 E-value=0.0097 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.9
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
...||+|+|.+++|||||++++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34799999999999999999873
No 254
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.95 E-value=0.0095 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.7
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
.+.+||+|+|.+++|||||++++.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999998863
No 255
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.94 E-value=0.0099 Score=51.82 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=18.7
Q ss_pred hhhcceEEeccCCCchhHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQ 66 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq 66 (392)
++.+||+++|.+++|||||++.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~ 39 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKV 39 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHH
Confidence 4578999999999999999874
No 256
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.93 E-value=0.0099 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.7
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
++.+||+++|.+++|||||++++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999986
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.93 E-value=0.01 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.6
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.-|+|+|++||||||+.+.+.-.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357889999999999999985433
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.92 E-value=0.013 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.8
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|.|+|++||||||++|.+.-.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999996544
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.92 E-value=0.01 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999985444
No 260
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.91 E-value=0.011 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|.|++||||||+++.+.--+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999984433
No 261
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.87 E-value=0.012 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|.|++||||||+.+.+.-.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999985433
No 262
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.85 E-value=0.012 Score=57.18 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.9
Q ss_pred cceEEeccCCCchhHHHHHHHHhhcC
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQT 73 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~~ 73 (392)
-|+.|+|++|||||||+|.+--++.+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 48999999999999999999777754
No 263
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.80 E-value=0.013 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|.|.+||||||+.+.+.-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999985433
No 264
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.79 E-value=0.011 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.5
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
..|+|.|++||||||+.+.+.-
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 265
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.79 E-value=0.012 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|.|++||||||+++.+.--+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999984433
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.78 E-value=0.012 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|+|++||||||+.+.+.-.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999986444
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.75 E-value=0.012 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999985444
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.75 E-value=0.0091 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.4
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
|+|+|++||||+|.++.+.--|
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999985554
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.74 E-value=0.013 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
+|.|.|++||||||++|.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.73 E-value=0.012 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.1
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++||||||++|.+--+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988544
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.72 E-value=0.013 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999986554
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.70 E-value=0.013 Score=53.59 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999985444
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.69 E-value=0.013 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999985554
No 274
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.68 E-value=0.011 Score=50.81 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=19.6
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
...+||+|+|.+++|||||++.+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999998544
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.63 E-value=0.015 Score=50.14 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=20.2
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|++||||||+.+.+.-.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999986533
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.63 E-value=0.014 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999985554
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.62 E-value=0.016 Score=51.03 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=17.0
Q ss_pred eEEeccCCCchhHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~ 68 (392)
|+|.|++|||||||++.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999998864
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.61 E-value=0.014 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999985444
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.60 E-value=0.014 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999985554
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.60 E-value=0.015 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|.|.|.+||||||+.+.+.-.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999986533
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.59 E-value=0.014 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999985444
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.57 E-value=0.015 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.2
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.|+|.|.+||||||+.+.+.-.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998543
No 283
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.57 E-value=0.014 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.6
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
+.+||+|||.+++|||+|+.++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~ 33 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRF 33 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHH
Confidence 4589999999999999999885
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.56 E-value=0.015 Score=50.35 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.0
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.-|+|.|.+||||||+.+.+.-.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999985433
No 285
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.56 E-value=0.014 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.7
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
...+||+|+|.+++|||||++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l 47 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVL 47 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHH
Confidence 45689999999999999999886
No 286
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.55 E-value=0.014 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999985554
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.55 E-value=0.015 Score=50.17 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=18.2
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++|+||||+++.+-
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999984
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.54 E-value=0.014 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999985554
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.52 E-value=0.015 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999985444
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.50 E-value=0.015 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++||||||++|.+--+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998654
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.50 E-value=0.015 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999985444
No 292
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.50 E-value=0.02 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.1
Q ss_pred hcceEEeccCCCchhHHHHHHHHhh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~~ 71 (392)
...|+|.|++||||||+.+.+.-.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999986544
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.48 E-value=0.012 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=14.0
Q ss_pred ceEEeccCCCchhHHHHHHH-Hhh
Q 016253 49 KLLLLGAGESGKSTIFKQIK-LLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~-~~~ 71 (392)
-+.|+|++||||||+++.+. -++
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999885 443
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.48 E-value=0.015 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999985554
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.47 E-value=0.016 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.9
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|.+||||||+.+.+.-.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999885433
No 296
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.46 E-value=0.017 Score=49.87 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|.|.+||||||+.+.+.-.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999986544
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.45 E-value=0.016 Score=51.01 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
.|.|+|++||||||+.+.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 298
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.45 E-value=0.014 Score=55.20 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.5
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
-.++|+|+|++|+|||||++.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L 38 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSL 38 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999996
No 299
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.44 E-value=0.016 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999985544
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.42 E-value=0.016 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.++|+|++||||||+++.+--++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 68999999999999999985544
No 301
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.40 E-value=0.016 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|.+--++
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999986554
No 302
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.38 E-value=0.018 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|.|.+||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999986543
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.38 E-value=0.017 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999985554
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.37 E-value=0.017 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=19.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999985544
No 305
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.36 E-value=0.017 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
..+||+|+|.+++|||||++++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~ 26 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999876
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.35 E-value=0.016 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.2
Q ss_pred hcceEEeccCCCchhHHHHHHHHhh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~~ 71 (392)
-..|+|.|.+||||||+.+.+.-.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999986544
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.34 E-value=0.022 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||++.+--++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999997666
No 308
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.32 E-value=0.019 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
+|+|.|++||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999986544
No 309
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.30 E-value=0.018 Score=53.60 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999985544
No 310
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.28 E-value=0.012 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.7
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
...+++|+|.+|||||||++.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4468999999999999999986
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.28 E-value=0.019 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
-+.|+|++||||||++|.+.-+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 578999999999999999976664
No 312
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.28 E-value=0.019 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
++.|+|++||||||+++.+--+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6889999999999999987433
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.27 E-value=0.02 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=20.2
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|.+||||||+++.+.-.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999986543
No 314
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.26 E-value=0.019 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.0
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|.+||||||+.+.+.-.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 358999999999999999885433
No 315
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.26 E-value=0.018 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++||||||++|.+--+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998654
No 316
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.23 E-value=0.022 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++|||||||++.+.-.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57889999999999999875444
No 317
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.22 E-value=0.019 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999985444
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.21 E-value=0.019 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.6
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..+.|+|++||||||++|.+.-++
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999986554
No 319
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.19 E-value=0.02 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.2
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
....||+|+|.+++|||||++++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45679999999999999999886
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.17 E-value=0.019 Score=53.32 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.2
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++||||||++|.+--+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998544
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.15 E-value=0.022 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|.|.+||||||+.+.+.-.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999986543
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.15 E-value=0.023 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.3
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
+...|+|.|.+||||||+.+.+.-.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999986444
No 323
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.15 E-value=0.014 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=11.8
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
..+||+++|.+++|||||++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l 28 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRF 28 (183)
T ss_dssp EEEEEEEECCCCC---------
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999886
No 324
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.14 E-value=0.025 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|+|++||||+|.++.+.--|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986555
No 325
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.017 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.5
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
..+||+++|.+++|||||++++.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999998863
No 326
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.13 E-value=0.043 Score=45.66 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhcceEEeccCCCchhHHHHHHHH
Q 016253 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 32 ~Id~~l~~~~~~~~~~~killlG~~~sGKST~~kq~~~ 69 (392)
.+.+.++.-+.......-|||.|++|+|||++++.+.-
T Consensus 9 ~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence 34443333223334455799999999999999998743
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.13 E-value=0.022 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
..|+|.|.+||||||+.+.+.-.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998654
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.08 E-value=0.028 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-.+|+|++|||||||++.+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999987654
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.07 E-value=0.029 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=19.8
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.-|+|.|++||||||+++.+.--+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457888999999999999985433
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.06 E-value=0.018 Score=49.38 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=15.1
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.|+|.|.+||||||+.+.+.-.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998543
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.05 E-value=0.023 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|.|.+||||||+.+.+.-.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999985443
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.04 E-value=0.024 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.4
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
.|.|.|..||||||+.+.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 333
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.02 E-value=0.02 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.7
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
..+||+++|.+++|||||++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l 29 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICY 29 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHH
Confidence 4589999999999999999775
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.02 E-value=0.022 Score=52.42 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.2
Q ss_pred eEEeccCCCchhHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~ 68 (392)
++|.|++||||||+.+++.
T Consensus 4 i~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 6889999999999999974
No 335
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.00 E-value=0.023 Score=49.81 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.4
Q ss_pred eEEeccCCCchhHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~ 68 (392)
+|++|+++|||||++.|+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999999874
No 336
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.99 E-value=0.023 Score=50.43 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.0
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++||||||+++++-
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999999985
No 337
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.98 E-value=0.025 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.2
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-|.|.|+.||||||+++.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998853
No 338
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.95 E-value=0.026 Score=47.94 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-|+|.|..||||||+.+.+.-.+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999986543
No 339
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.92 E-value=0.012 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.1
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
...+||+|+|.+++|||||++++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l 31 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRV 31 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBC
T ss_pred cCccEEEEECCCCCCHHHHHHHH
Confidence 45689999999999999999875
No 340
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.91 E-value=0.024 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.1
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
..|.|+|++||||||++|.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 341
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.90 E-value=0.026 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.0
Q ss_pred hcceEEeccCCCchhHHHHHHHHhh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~~ 71 (392)
...|+|.|++||||||+.+.+.-.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999986544
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.89 E-value=0.026 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.5
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|.|.|++||||||+++.+.-.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999986554
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.88 E-value=0.024 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.5
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|.+||||||+.+.+.-.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999985433
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.87 E-value=0.025 Score=50.48 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=23.6
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc-CCCCHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ-TGFDEAE 79 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~-~~~~~~e 79 (392)
..|+|.|++||||||+.+.+.-.++ ..++-++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~ 38 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAGD 38 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHHH
Confidence 4789999999999999999854443 2344443
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.85 E-value=0.035 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=21.8
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
+...|.|.|++||||||+++.+.-++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999986655
No 346
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.026 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
...+||+|||.+++|||||++++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999875
No 347
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.80 E-value=0.027 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.3
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
..|+|.|..||||||+.+.+.-
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.79 E-value=0.025 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--++
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999985443
No 349
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.77 E-value=0.027 Score=52.20 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=33.6
Q ss_pred cccccchhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 232 RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 232 ~~~r~~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
..-++.......+++.||.|+|..+-.. ..+.. ++ .. +.|.++++||+|+..
T Consensus 9 ~ka~~~~~~~l~~~D~vl~VvDar~P~~------~~~~~------l~------ll-~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 9 EKAKRQIKDLLRLVNTVVEVRDARAPFA------TSAYG------VD------FS-RKETIILLNKVDIAD 60 (262)
T ss_dssp CCTTHHHHHHHTTCSEEEEEEETTSTTT------TSCTT------SC------CT-TSEEEEEEECGGGSC
T ss_pred HHHHHHHHHHHhhCCEEEEEeeCCCCCc------CcChH------HH------hc-CCCcEEEEECccCCC
Confidence 3444556667889999999999753211 11110 00 12 689999999999864
No 350
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.77 E-value=0.026 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.5
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
.-+.|.|++||||||+++.+.-.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999987543
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.75 E-value=0.028 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.|.|.|.+||||||+++.+.-.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998543
No 352
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.74 E-value=0.027 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.9
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
.-|+|.|.+||||||+++.+.-
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999998843
No 353
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.73 E-value=0.026 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.8
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-+.|+|++||||||++|.+--+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999998443
No 354
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.72 E-value=0.018 Score=54.88 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=20.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
.+.|+|++||||||++|.+--++.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 588999999999999999866654
No 355
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=93.71 E-value=0.023 Score=60.61 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=42.8
Q ss_pred ccceeEEecCCccc-------------cccchhccc-cccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCC
Q 016253 220 GEVYRLFDVGGQRN-------------ERRKWIHLF-EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285 (392)
Q Consensus 220 ~~~l~i~DvgGq~~-------------~r~~w~~yf-~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~ 285 (392)
...+.++||.|-.. .+.....|. ..++.|++|+|.+.- ... .+.+.+...+..
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~-------~~~---~d~l~ll~~L~~--- 215 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-------LAN---SDALKIAKEVDP--- 215 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC-------SSS---CHHHHHHHHHCT---
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC-------cch---hHHHHHHHHHHh---
Confidence 34789999999543 122234444 468899999997521 001 122233444422
Q ss_pred CCCceEEEEeeCCCCccc
Q 016253 286 FEKTSFMLFLNKFDIFEK 303 (392)
Q Consensus 286 ~~~~~iiL~~NK~Dl~~~ 303 (392)
.+.|+++++||.|+...
T Consensus 216 -~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 216 -QGQRTIGVITKLDLMDE 232 (772)
T ss_dssp -TCSSEEEEEECTTSSCT
T ss_pred -cCCCEEEEEeCcccCCc
Confidence 35899999999999754
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.71 E-value=0.021 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|.+||||||+++.+--++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999986555
No 357
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.70 E-value=0.03 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.3
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|.|.|..||||||+.+.+.-.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999886543
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.67 E-value=0.028 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.0
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|++||||||+.+.+.-.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368889999999999999985444
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.67 E-value=0.067 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.7
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
.+..+++++|.+||||||++.++-
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHH
Confidence 356799999999999999998873
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.61 E-value=0.028 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.7
Q ss_pred hcceEEeccCCCchhHHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~ 69 (392)
...|+|.|.+||||||+.+.+.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999853
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.61 E-value=0.018 Score=50.68 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.5
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-|.|.|.+||||||+++.+.-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3788999999999999987543
No 362
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.58 E-value=0.03 Score=49.36 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=18.7
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-++|+|++|||||||++++-.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 363
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.55 E-value=0.029 Score=54.51 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-+.|+|++||||||++|.+--+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998433
No 364
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.54 E-value=0.025 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.6
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
+.+||+|+|.+++|||||++++-
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999973
No 365
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.51 E-value=0.03 Score=51.53 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-|+|.|.+||||||+.+.+.-
T Consensus 6 lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999854
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.50 E-value=0.031 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.|+|.|++||||||+.+.+.-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999985443
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.49 E-value=0.036 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.2
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~ 72 (392)
..+.|+|++||||||+++.+.-+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999876543
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.47 E-value=0.037 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
=+.|+|++||||||+++.+.-+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999986655
No 369
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.46 E-value=0.032 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999996655
No 370
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.46 E-value=0.03 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999994433
No 371
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.45 E-value=0.03 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.1
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
.+||+|+|.+++|||||++++-
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999974
No 372
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.40 E-value=0.03 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.3
Q ss_pred hhhcceEEeccCCCchhHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~ 67 (392)
...+||+|+|.+++|||||+..+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHH
Confidence 45689999999999999999886
No 373
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.39 E-value=0.032 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=20.7
Q ss_pred hcceEEeccCCCchhHHHHHHHHh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~ 70 (392)
...|.|.|..||||||+.+.+.-.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999998665
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.36 E-value=0.032 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-+.|+|++||||||++|.+--+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998443
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.34 E-value=0.036 Score=49.42 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|.+||||||+.+.+.-.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999985544
No 376
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.33 E-value=0.033 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=18.8
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-+.|+|++||||||++|.+--+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999998433
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.32 E-value=0.033 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999985443
No 378
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.30 E-value=0.033 Score=55.34 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.0
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.++|+|+|++|+|||||++.+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L 51 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSL 51 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHH
Confidence 368999999999999999886
No 379
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.21 E-value=0.04 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||+++.+--++
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57889999999999999986655
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.14 E-value=0.052 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.3
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
.-|+|.|.+||||||+++.+.-.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999998543
No 381
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.14 E-value=0.037 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|++|||||||++++-...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999985543
No 382
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.12 E-value=0.038 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 46899999999999999995443
No 383
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.11 E-value=0.029 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|.+--+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999995443
No 384
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.11 E-value=0.078 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.8
Q ss_pred hcc-eEEeccCCCchhHHHHHHH
Q 016253 47 IQK-LLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~k-illlG~~~sGKST~~kq~~ 68 (392)
.++ +.|+|.+++|||||++.+-
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 466 8999999999999999873
No 385
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.10 E-value=0.037 Score=53.72 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.4
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++||||||+++.+-
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 386
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.10 E-value=0.072 Score=50.62 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=32.4
Q ss_pred chhccccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 237 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 237 ~w~~yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
++..--.++|.|++|+|..+.+ .+.+.++. |-..+. ..++|.+|++||+||..
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~------~~~~~i~r----~L~~~~---~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPS------FSTALLDR----FLVLVE---ANDIQPIICITKMDLIE 131 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTT------CCHHHHHH----HHHHHH---TTTCEEEEEEECGGGCC
T ss_pred hhHHHHHhCCEEEEEEeCCCCC------CCHHHHHH----HHHHHH---HCCCCEEEEEECCccCc
Confidence 3344578999999999974211 12222222 222221 23688999999999964
No 387
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.04 Score=49.38 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-++|+|++||||||+++++-.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999865
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.06 E-value=0.043 Score=48.72 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=19.6
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
.-|.|.|..||||||+++.+.-
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999865
No 389
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.05 E-value=0.038 Score=55.00 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.7
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
+++.|+|++|||||||++.+-
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999873
No 390
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.05 E-value=0.04 Score=46.44 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.2
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-++|+|++||||||+++.+--
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588899999999999988743
No 391
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.03 E-value=0.04 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.3
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
++|+|++|+||||++|.+--..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 8999999999999999985443
No 392
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.97 E-value=0.069 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.1
Q ss_pred hhhcceEEeccCCCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~~sGKST~~kq~~ 68 (392)
....-|||.|++|+|||++++.+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 344579999999999999998873
No 393
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.95 E-value=0.041 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.6
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-|+|.|.+||||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.93 E-value=0.044 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.5
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~ 72 (392)
-.++|+|++||||||+++.+--++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4799999999999999999865553
No 395
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.88 E-value=0.044 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.1
Q ss_pred eEEeccCCCchhHHHHHHHHhhcC
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQT 73 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~~ 73 (392)
++|+|++|+||||++|.+--....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~ 75 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV 75 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999998554433
No 396
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.87 E-value=0.32 Score=47.11 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=28.7
Q ss_pred cccccCEEEEEEEcccccccccchhhhhhHHHHHHHHHHHHcCCCCCCceEEEEeeCCCCcc
Q 016253 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302 (392)
Q Consensus 241 yf~~~~~iifv~dls~yd~~l~e~~~~nrl~es~~~f~~i~~~~~~~~~~iiL~~NK~Dl~~ 302 (392)
.-.+++.|++|.+.. ...+.+.++..+..-+. .++|.+|++||+||..
T Consensus 127 i~anvD~v~iv~a~~-------P~~~~~~i~r~L~~a~~-------~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-------PELSLNIIDRYLVGCET-------LQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EEECCCEEEEEEEST-------TTCCHHHHHHHHHHHHH-------HTCEEEEEEECGGGCC
T ss_pred HHhcCCEEEEEEeCC-------CCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCC
Confidence 357899999887641 12233333333222111 2578899999999964
No 397
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.85 E-value=0.043 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.1
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|++|||||||++++-..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998643
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.83 E-value=0.029 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-+.|+|++||||||++|.+--+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998433
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.76 E-value=0.044 Score=53.90 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
.+.|+|++||||||++|.+--+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998543
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.76 E-value=0.047 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=20.5
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
-.|.|+|.+||||||+.+.+.-..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999985433
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.73 E-value=0.052 Score=47.88 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.0
Q ss_pred hhcceEEeccCCCchhHHHHHHHHhh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~~ 71 (392)
...-|.|.|..||||||+.+.+.-.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34578899999999999999997664
No 402
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.73 E-value=0.036 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.8
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-|.|.|+.||||||++|.+.-+
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999987544
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.67 E-value=0.048 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|+|.|..||||||+.+.+.-.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999986544
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.047 Score=54.87 Aligned_cols=24 Identities=13% Similarity=0.452 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
-.++|+|++||||||++|.+--+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 479999999999999999985544
No 405
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.62 E-value=0.05 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.8
Q ss_pred hhcceEEeccCCCchhHHHHHHHHh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~ 70 (392)
+...|.|.|++||||||+.+.+.-.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999988553
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.60 E-value=0.047 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
-.++|+|++||||||+++.+--++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999985554
No 407
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.58 E-value=0.049 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.++|+|++||||||+++.+--++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999985544
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.49 E-value=0.066 Score=45.03 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.5
Q ss_pred eEEeccCCCchhHHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~ 69 (392)
.+|+|+.|||||||+..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58899999999999888754
No 409
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.48 E-value=0.06 Score=50.96 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|++||||||+++.+--++
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999985554
No 410
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.45 E-value=0.05 Score=50.56 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.6
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+|+|.+++|||||++++
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l 23 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQL 23 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999987
No 411
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.42 E-value=0.43 Score=45.67 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=25.7
Q ss_pred ccccceeEEecCCccccccchhccccccCEEEEEEEcc
Q 016253 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255 (392)
Q Consensus 218 ~~~~~l~i~DvgGq~~~r~~w~~yf~~~~~iifv~dls 255 (392)
..+..+.++||+|...-. ....+.++.+++|+|.+
T Consensus 145 ~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPG 179 (337)
T ss_dssp HTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSC
T ss_pred cCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCC
Confidence 356789999999975422 22357899999999864
No 412
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.40 E-value=0.058 Score=45.72 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.8
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
.-++|.|++|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 34899999999999999876
No 413
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.40 E-value=0.1 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.5
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
--++|.|++|+||||++|.+--.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998443
No 414
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.40 E-value=0.054 Score=49.88 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~ 67 (392)
.||+|+|.+++|||||++++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999987
No 415
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.34 E-value=0.055 Score=49.34 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.8
Q ss_pred hcceEEeccCCCchhHHHHHHHHhh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~~ 71 (392)
...|.|.|++||||||+.+.+.-.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999985443
No 416
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.32 E-value=0.056 Score=51.11 Aligned_cols=21 Identities=48% Similarity=0.580 Sum_probs=19.2
Q ss_pred hcceEEeccCCCchhHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~ 67 (392)
.+||+|+|.+++|||||++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l 23 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSII 23 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 479999999999999999875
No 417
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.24 E-value=0.11 Score=51.11 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.2
Q ss_pred ceeEEecCCcccccc-------chhccccccCEEEEEEEccccc
Q 016253 222 VYRLFDVGGQRNERR-------KWIHLFEGVSAVIFCAAISEYD 258 (392)
Q Consensus 222 ~l~i~DvgGq~~~r~-------~w~~yf~~~~~iifv~dls~yd 258 (392)
.+++|||+|+...++ .|..++++++++++|+|.++-+
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 588999999987665 6888999999999999987543
No 418
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.21 E-value=0.059 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEEeccCCCchhHHHHHHHHhhcCC
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQTG 74 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~~~ 74 (392)
++|+|++|+||||++|.+--....+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred EEEECCCcChHHHHHHHHHHHcCCC
Confidence 8999999999999999986544333
No 419
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.20 E-value=0.1 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
...|.|+|.+||||||+++.+-
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999999884
No 420
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.17 E-value=0.058 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.229 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|+.||||||+++.+--+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998443
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.10 E-value=0.063 Score=50.10 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.6
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
..|.|.|++||||||+.+.+.-
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999974
No 422
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.08 E-value=0.066 Score=46.46 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.9
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-+++.|.+||||||+++.+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 5788899999999998886
No 423
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.03 E-value=0.081 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
.|.|.|+.||||||+.+.+.-.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999966443
No 424
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.02 E-value=0.062 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.6
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~ 72 (392)
-++.|+|++|+||||++++|--+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999965553
No 425
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.87 E-value=0.068 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||+++.+.-+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999985443
No 426
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.86 E-value=0.068 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||+++.+. +.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 55
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.81 E-value=0.069 Score=50.78 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.9
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|..||||||++|.+--.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999998644
No 428
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.80 E-value=0.081 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.1
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
--++|+|++||||||+++.+--++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999885544
No 429
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.76 E-value=0.078 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.8
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.-|++.|++||||||+++.+.-.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458889999999999999885443
No 430
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.74 E-value=0.08 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|.+||||||+++.|--++
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHh
Confidence 48899999999999999885443
No 431
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.73 E-value=0.15 Score=50.56 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.8
Q ss_pred hcceEEeccCCCchhHHHHHHHHhh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~~ 71 (392)
..-+.|+|++||||||+++.+.-+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468999999999999999986543
No 432
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.71 E-value=0.068 Score=54.47 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=17.5
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-++|+|++|||||||++++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999994
No 433
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=91.71 E-value=0.069 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.1
Q ss_pred hhhcceEEeccC---------CCchhHHHHHHH
Q 016253 45 KHIQKLLLLGAG---------ESGKSTIFKQIK 68 (392)
Q Consensus 45 ~~~~killlG~~---------~sGKST~~kq~~ 68 (392)
...+||+|+|.+ ++|||||++++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~ 49 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFV 49 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHH
Confidence 356899999999 999999999874
No 434
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.67 E-value=0.076 Score=47.06 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.1
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
..-++|.|++|+||||+++.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999873
No 435
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.59 E-value=0.077 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.7
Q ss_pred ceEEeccCCCchhHHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~ 69 (392)
-+||.|++|+||||+++.+--
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999998843
No 436
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.46 E-value=0.082 Score=47.32 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.4
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
=++|+|++|||||||+.|+-
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999988873
No 437
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.37 E-value=0.094 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|++||||||+++.+--++
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhc
Confidence 48899999999999999885554
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.34 E-value=0.076 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.8
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
.-+||.|++|+||||+++.+.-
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998743
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.32 E-value=0.079 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.3
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
++.|+|++||||||++|.+--++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999976664
No 440
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.23 E-value=0.086 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.2
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
...+.|+|++||||||+++.+-
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999874
No 441
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.20 E-value=0.11 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||+++.+--+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 56899999999999999996655
No 442
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.20 E-value=0.086 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.2
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|++|||||||++|+-...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997665
No 443
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.17 E-value=0.11 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.6
Q ss_pred cceEEeccCCCchhHHHHHHHHhhc
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~~ 72 (392)
-++.|+|++|||||||++.+--+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccC
Confidence 4899999999999999999966553
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.17 E-value=0.086 Score=52.14 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.6
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-|+|.|.+||||||+++++.
T Consensus 260 lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47788999999999999974
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.14 E-value=0.085 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.4
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999987655
No 446
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.12 E-value=0.12 Score=53.02 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
..+|+|+|..++|||||++.+-
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Ll 86 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLL 86 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999873
No 447
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.11 E-value=0.079 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
++.|+|++||||||++|.+--++.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 688999999999999999866654
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.07 E-value=0.095 Score=47.22 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=20.5
Q ss_pred hcceEEeccCCCchhHHHHHHHHh
Q 016253 47 IQKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~~~ 70 (392)
...|.|.|+.||||||+.+.+.-.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998653
No 449
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.97 E-value=0.1 Score=45.10 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.6
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-+.+.|++||||||++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778899999999998776
No 450
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.96 E-value=0.095 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|+|||||++.+.-..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999886433
No 451
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.94 E-value=0.097 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
..++.|+|.+++|||||++.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999974
No 452
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.84 E-value=0.11 Score=45.40 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.2
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
.-++|.|++|+||||+++.+-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458999999999999998763
No 453
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.74 E-value=0.044 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=19.4
Q ss_pred eEEeccCCCchhHHHHHHHHhhc
Q 016253 50 LLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~~ 72 (392)
+.|+|++||||||+++.+..+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36899999999999999876553
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.70 E-value=0.099 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-+.|+|++||||||++|-+--++
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36799999999999999986555
No 455
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.69 E-value=0.11 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.585 Sum_probs=20.0
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
...||+++|.+++|||||+..+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHH
Confidence 4569999999999999999987
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.63 E-value=0.085 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
++.|+|++||||||++|.+--++.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 588999999999999999866653
No 457
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.63 E-value=0.42 Score=44.37 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=17.4
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-+||.|++|+||||+++.+
T Consensus 69 ~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3899999999999999877
No 458
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.59 E-value=0.098 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.4
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
...+|+|+|.+||||||+.+++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999984
No 459
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.57 E-value=0.11 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.1
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|++||||||+++.+--.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999988543
No 460
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.51 E-value=0.091 Score=54.50 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
++.|+|++||||||++|.+--++.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Confidence 689999999999999999866664
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.42 E-value=0.13 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.6
Q ss_pred eEEeccCCCchhHHHHHHHHhh
Q 016253 50 LLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~~~ 71 (392)
.+|+|++|||||||+..+....
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5788999999999999886543
No 462
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.34 E-value=0.063 Score=51.01 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.3
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
.+.|+|++|+|||||++.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHhc
Confidence 68999999999999999973
No 463
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.32 E-value=0.22 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++|+|+.||||||+++.+--+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999885444
No 464
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.24 E-value=0.097 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=16.8
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
.-|.|-|++||||||+.+.+.-.+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357888999999999999986543
No 465
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.22 E-value=0.16 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.6
Q ss_pred hhcceEEeccCCCchhHHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~ 69 (392)
+..+|.|+|.+|+||||++..+-.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998843
No 466
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.13 E-value=0.13 Score=44.53 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=17.9
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|.|++|+||||+++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999873
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.07 E-value=0.12 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|-+--+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999986544
No 468
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=89.97 E-value=0.12 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.0
Q ss_pred hhcceEEeccCCCchhHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~ 68 (392)
+..+|+|+|.+++|||||++++-
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHh
Confidence 34589999999999999999973
No 469
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.90 E-value=0.14 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
+|+.|+|.+++|||||++.+--
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998853
No 470
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.88 E-value=0.14 Score=54.59 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.2
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|++||||||++|++-.+
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 4788999999999999998654
No 471
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.80 E-value=0.14 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.1
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
.-+||.|++|+||||+++.+--
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999998843
No 472
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.76 E-value=0.16 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.++++|++||||||+++.+-..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58889999999999999886554
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.14 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999986555
No 474
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.71 E-value=0.14 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.8
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++|||||||++|+-
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 37899999999999999874
No 475
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.61 E-value=0.15 Score=46.93 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.6
Q ss_pred cceEEeccCCCchhHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~ 68 (392)
.-+||.|++|+||||+++.+-
T Consensus 52 ~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 358999999999999999884
No 476
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.58 E-value=0.15 Score=54.65 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.3
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|++||||||++|++-.+
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4788999999999999998653
No 477
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.55 E-value=0.086 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=20.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
++.|+|++||||||++|.+--++.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 588999999999999998865554
No 478
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=89.49 E-value=0.15 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.7
Q ss_pred hhcceEEeccCCCchhHHHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~ 69 (392)
...++.|+|.+++||||+++.+--
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999999843
No 479
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.45 E-value=0.16 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
-+||.|++|+||||+++.+--...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCcCHHHHHHHHHHHhC
Confidence 389999999999999999865443
No 480
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.39 E-value=0.3 Score=44.54 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.8
Q ss_pred hhcceEEeccCCCchhHHHHHHHHh
Q 016253 46 HIQKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~~~~ 70 (392)
...-+||.|++|+|||++++.+.-.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3457999999999999999987543
No 481
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.34 E-value=0.31 Score=42.58 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=17.2
Q ss_pred ceEEeccCCCchhHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 49 killlG~~~sGKST~~kq~ 67 (392)
-++|.|++|+||||+++.+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999987
No 482
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.28 E-value=0.16 Score=45.87 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.0
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-+||.|++|+||||+++.+-
T Consensus 41 ~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999884
No 483
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.26 E-value=0.12 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.6
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
-.+.|+|.+||||||++|.+.-.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 46889999999999999998543
No 484
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.26 E-value=0.15 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.6
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|.+--+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999985544
No 485
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.21 E-value=0.16 Score=49.28 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=18.0
Q ss_pred eEEeccCCCchhHHHHHHHH
Q 016253 50 LLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 50 illlG~~~sGKST~~kq~~~ 69 (392)
.+|+|++|||||||+..+-.
T Consensus 26 ~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999864
No 486
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.18 E-value=0.26 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.7
Q ss_pred cceEEeccCCCchhHHHHHHHHh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~ 70 (392)
.-+||.|++|+||||+++.+--.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999998433
No 487
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.17 E-value=0.16 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.1
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++||||||++|.+--+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999985443
No 488
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.12 E-value=0.19 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=19.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
-++++|++||||||+++.+-..+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 47899999999999999886554
No 489
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.08 E-value=0.13 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.4
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..+.|+|++||||||+++.+--+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 468999999999999999985443
No 490
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.05 E-value=0.16 Score=55.51 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.9
Q ss_pred ceEEeccCCCchhHHHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~ 68 (392)
-++|+|++||||||++|++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999999999983
No 491
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=89.04 E-value=0.17 Score=48.47 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=16.8
Q ss_pred ceEEeccCCCchhHHHHH
Q 016253 49 KLLLLGAGESGKSTIFKQ 66 (392)
Q Consensus 49 killlG~~~sGKST~~kq 66 (392)
||+|+|.+|+|||+|+++
T Consensus 1 KIvllGdsgvGKTSLl~~ 18 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKV 18 (331)
T ss_dssp CEEEECSTTSSTTHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 799999999999999974
No 492
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.01 E-value=0.17 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.9
Q ss_pred hcceEEeccCCCchhHHHHHHH
Q 016253 47 IQKLLLLGAGESGKSTIFKQIK 68 (392)
Q Consensus 47 ~~killlG~~~sGKST~~kq~~ 68 (392)
..+|+|+|..+|||||+++.+-
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~ 55 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIV 55 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4599999999999999999984
No 493
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.86 E-value=0.1 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.5
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
.+.|+|++|||||||++.+..+..
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987764
No 494
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.86 E-value=0.18 Score=55.53 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=19.0
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-++|+|++||||||++|++-++
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4788999999999999999444
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.86 E-value=0.17 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~ 71 (392)
.+.|+|++|||||||+|.+--+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57799999999999999986554
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.81 E-value=0.24 Score=43.66 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.7
Q ss_pred cceEEeccCCCchhHHHHHHHHhh
Q 016253 48 QKLLLLGAGESGKSTIFKQIKLLF 71 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~~~ 71 (392)
..|.|.|+.||||||+.+.+.-.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999986654
No 497
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.75 E-value=0.19 Score=47.44 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=19.0
Q ss_pred cceEEeccCCCchhHHHHHHHH
Q 016253 48 QKLLLLGAGESGKSTIFKQIKL 69 (392)
Q Consensus 48 ~killlG~~~sGKST~~kq~~~ 69 (392)
.-++|.|++|+||||+++.+--
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999843
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.73 E-value=0.18 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.5
Q ss_pred ceEEeccCCCchhHHHHHHHHh
Q 016253 49 KLLLLGAGESGKSTIFKQIKLL 70 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~ 70 (392)
-|+|.|++||||||+.+.+.-.
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4788899999999999887543
No 499
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.68 E-value=0.12 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.7
Q ss_pred ceEEeccCCCchhHHHHHHHHhhc
Q 016253 49 KLLLLGAGESGKSTIFKQIKLLFQ 72 (392)
Q Consensus 49 killlG~~~sGKST~~kq~~~~~~ 72 (392)
++.|+|++||||||++|.+--++.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 588999999999999999865553
No 500
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.64 E-value=0.19 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=19.9
Q ss_pred hhcceEEeccCCCchhHHHHHH
Q 016253 46 HIQKLLLLGAGESGKSTIFKQI 67 (392)
Q Consensus 46 ~~~killlG~~~sGKST~~kq~ 67 (392)
...+|+++|..++|||||+..+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l 44 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENI 44 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999987
Done!