BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016254
         (392 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
          Length = 458

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 21/73 (28%)

Query: 167 PFWLALYVEGTRFTEAK----------------LLAAQEYALSRGLPIPRNVLIPRTKGF 210
           P WL ++VEGT+FT  K                L+A ++Y ++    +PRN L+     F
Sbjct: 245 PHWL-IFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVN----LPRNKLVYSPHVF 299

Query: 211 VSAVNNMRSFVPA 223
              V N   F PA
Sbjct: 300 GPDVYNQPYFGPA 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,036,068
Number of Sequences: 62578
Number of extensions: 370511
Number of successful extensions: 1023
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 1
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)