Query 016254
Match_columns 392
No_of_seqs 335 out of 2301
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.5 1.2E-13 4E-18 135.6 12.1 110 67-181 108-237 (367)
2 2lnd_A De novo designed protei 43.8 53 0.0018 25.0 5.7 43 150-196 36-78 (112)
3 1fr2_A Colicin E9 immunity pro 35.5 23 0.00079 27.2 2.7 52 149-200 31-84 (86)
4 3u43_A Colicin-E2 immunity pro 31.3 33 0.0011 26.8 3.0 55 147-201 29-85 (94)
5 1unk_A Colicin E7; immunity pr 30.7 32 0.0011 26.5 2.8 50 151-200 34-85 (87)
6 1gxg_A Colicin E8 immunity pro 28.6 29 0.00098 26.6 2.2 50 151-200 32-83 (85)
7 3u5e_L 60S ribosomal protein L 14.8 57 0.0019 28.9 1.3 35 141-177 95-130 (199)
8 1msz_A DNA-binding protein smu 11.3 2.2E+02 0.0075 21.7 3.6 42 152-197 19-60 (86)
9 3p8k_A Hydrolase, carbon-nitro 10.8 2.4E+02 0.0081 25.5 4.5 47 150-198 38-98 (281)
10 1vs1_A 3-deoxy-7-phosphoheptul 10.4 5.2E+02 0.018 23.7 6.7 60 118-179 125-185 (276)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.49 E-value=1.2e-13 Score=135.59 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=77.8
Q ss_pred HcceEEEEEeccccc----cccCCCcEEEEeCCCCCCcHHHHHHHHHhcCC--CCceEeeEcccccccchh---hHHHHh
Q 016254 67 WACIKVELYADAETF----QLMGKEHALVICNHRSDIDWLVGWVVAQRKGC--LGSTLAIIKKEAKHLPFI---GWSMWF 137 (392)
Q Consensus 67 ~~g~kv~v~Gd~~~~----~~~~~e~~liiaNH~S~iD~lvl~~l~~r~g~--lg~~~~v~K~~L~~iP~~---Gw~~~~ 137 (392)
+.|++ |.|-+... +.+.++++|++|||||+.|.+++..++++.+. -.++.||+|+++...|+. +++ +.
T Consensus 108 ~~~s~--V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~ 184 (367)
T 1iuq_A 108 FGNSF--VGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RN 184 (367)
T ss_dssp GGGCE--EECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SE
T ss_pred hcCCE--eecchhhhhHHhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hh
Confidence 45665 77822000 34567899999999999999999988864110 014799999999977766 444 34
Q ss_pred cCccccC----------CCCh-hhHHHHHHHHHHhhcCCCCeEEEEeecccccch
Q 016254 138 SEYVFLE----------RRWN-KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTE 181 (392)
Q Consensus 138 ~~~ifv~----------R~~~-~d~~~i~~~~~~l~~~~~~~~llIFPEGTR~t~ 181 (392)
+++|+.. |... .+.+++++..+.+++.|.. ++|||||||..+
T Consensus 185 l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~s--I~IFPEGTRsR~ 237 (367)
T 1iuq_A 185 LICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQL--IWIAPSGGRDRP 237 (367)
T ss_dssp EEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCE--EEECTTCSCCCB
T ss_pred eeeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeE--EEEeCCCCCCCC
Confidence 5677763 3221 3567788888888876656 889999999986
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.81 E-value=53 Score=24.99 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEeecccccchhhHHHHHHHHHHcCC
Q 016254 150 DEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGL 196 (392)
Q Consensus 150 d~~~i~~~~~~l~~~~~~~~llIFPEGTR~t~~k~~~s~~~A~~~gl 196 (392)
..+.++..++.+++.|.| +++|..|..-+ .....+.-|++.|+
T Consensus 36 ssqdirdiiksmkdngkp--lvvfvngasqn--dvnefqneakkegv 78 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKP--LVVFVNGASQN--DVNEFQNEAKKEGV 78 (112)
T ss_dssp SHHHHHHHHHHHTTCCSC--EEEEECSCCHH--HHHHHHHHHHHHTC
T ss_pred chhhHHHHHHHHHhcCCe--EEEEecCcccc--cHHHHHHHHHhcCc
Confidence 345677888889999999 99999997443 33445555666654
No 3
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=35.54 E-value=23 Score=27.23 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHhhcCCCCeEEEEeec-ccccchhh-HHHHHHHHHHcCCCCCc
Q 016254 149 KDEQTLKSGFKRLVDFPMPFWLALYVE-GTRFTEAK-LLAAQEYALSRGLPIPR 200 (392)
Q Consensus 149 ~d~~~i~~~~~~l~~~~~~~~llIFPE-GTR~t~~k-~~~s~~~A~~~glp~l~ 200 (392)
.+...+...+.++..+|.+.=|+.+|| |-..+++. .....++-.++|+|-+|
T Consensus 31 ~e~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 31 EELVKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 344556666677777777766889997 44444544 56788899999999765
No 4
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=31.33 E-value=33 Score=26.82 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.2
Q ss_pred ChhhHHHHHHHHHHhhcCCCCeEEEEeeccc-ccchhh-HHHHHHHHHHcCCCCCce
Q 016254 147 WNKDEQTLKSGFKRLVDFPMPFWLALYVEGT-RFTEAK-LLAAQEYALSRGLPIPRN 201 (392)
Q Consensus 147 ~~~d~~~i~~~~~~l~~~~~~~~llIFPEGT-R~t~~k-~~~s~~~A~~~glp~l~~ 201 (392)
.+.....+...+.++...|.+.=|+.+||.. ..+++. .....++-+++|+|-+|.
T Consensus 29 ~E~e~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~nG~pgFK~ 85 (94)
T 3u43_A 29 TEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGFKQ 85 (94)
T ss_dssp SHHHHHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHTTCCCCBC
T ss_pred CHHHHHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCccchh
Confidence 3344455666667777677766688999764 344444 667888999999998764
No 5
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=30.69 E-value=32 Score=26.50 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeecc-cccchhh-HHHHHHHHHHcCCCCCc
Q 016254 151 EQTLKSGFKRLVDFPMPFWLALYVEG-TRFTEAK-LLAAQEYALSRGLPIPR 200 (392)
Q Consensus 151 ~~~i~~~~~~l~~~~~~~~llIFPEG-TR~t~~k-~~~s~~~A~~~glp~l~ 200 (392)
...+.....++..+|.+.=|+.|||. -.-+++. .+...++-+++|+|-+|
T Consensus 34 ~d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 34 LDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFK 85 (87)
T ss_dssp HHHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 35566667777778877779999973 4444444 56778899999999765
No 6
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=28.57 E-value=29 Score=26.65 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeec-ccccchhh-HHHHHHHHHHcCCCCCc
Q 016254 151 EQTLKSGFKRLVDFPMPFWLALYVE-GTRFTEAK-LLAAQEYALSRGLPIPR 200 (392)
Q Consensus 151 ~~~i~~~~~~l~~~~~~~~llIFPE-GTR~t~~k-~~~s~~~A~~~glp~l~ 200 (392)
...+...+.++..+|.+.=|+.+|| |-..+++. .....++-.++|+|-+|
T Consensus 32 ~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 32 QDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHHTTCCTTTTHHHHSCCTTCCSSHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 3444455556656677666888997 33344444 56788899999999775
No 7
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=14.83 E-value=57 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.463 Sum_probs=26.4
Q ss_pred cccC-CCChhhHHHHHHHHHHhhcCCCCeEEEEeeccc
Q 016254 141 VFLE-RRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGT 177 (392)
Q Consensus 141 ifv~-R~~~~d~~~i~~~~~~l~~~~~~~~llIFPEGT 177 (392)
|.|| |...+..+.++..+++|++|... |++||-..
T Consensus 95 I~VD~RR~nks~Esl~~NVqrLk~y~sk--lilFPrk~ 130 (199)
T 3u5e_L 95 IAVDHRRQNRNQEIFDANVQRLKEYQSK--IIVFPRNG 130 (199)
T ss_dssp BCCCTTCCCCBHHHHHHHHHHHHHHHHT--EEECCSSS
T ss_pred eeeccccccccHHHHHHHHHHHHHHHhh--eeEecccc
Confidence 5565 44456778888889999988778 99999443
No 8
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=11.32 E-value=2.2e+02 Score=21.68 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeecccccchhhHHHHHHHHHHcCCC
Q 016254 152 QTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLP 197 (392)
Q Consensus 152 ~~i~~~~~~l~~~~~~~~llIFPEGTR~t~~k~~~s~~~A~~~glp 197 (392)
..+...++.+.+.... -+.|| ..++......-.++|++.||.
T Consensus 19 ~~i~~~l~~F~~~~~~--~l~FP--~sLs~~eR~~IH~lA~~~GL~ 60 (86)
T 1msz_A 19 DHFRAMIVEFMASKKM--QLEFP--PSLNSHDRLRVHQIAEEHGLR 60 (86)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEC--TTCCSHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhcCCCc--EEEcC--CCCCHHHHHHHHHHHHHcCCC
Confidence 5577788888765555 78999 446666666778899998875
No 9
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=10.81 E-value=2.4e+02 Score=25.51 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEeeccccc--c------------hhhHHHHHHHHHHcCCCC
Q 016254 150 DEQTLKSGFKRLVDFPMPFWLALYVEGTRF--T------------EAKLLAAQEYALSRGLPI 198 (392)
Q Consensus 150 d~~~i~~~~~~l~~~~~~~~llIFPEGTR~--t------------~~k~~~s~~~A~~~glp~ 198 (392)
..+.+.+.+++..+.+-. +++|||-.-. . ....+.-.+.|++.|+.+
T Consensus 38 Nl~~~~~~i~~A~~~gad--lvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~i 98 (281)
T 3p8k_A 38 NETQITQWFEKNMNAEVD--VVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDI 98 (281)
T ss_dssp HHHHHHHHHHHHCCTTCC--EEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHhCCCc--EEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEE
Confidence 345556666666555545 9999997532 1 112344556788877654
No 10
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=10.40 E-value=5.2e+02 Score=23.68 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=40.1
Q ss_pred EeeEcccccccchhhHHHHhcCccccCCCChhhHHHHHHHHHHhhcCCCCeEEEEeec-cccc
Q 016254 118 LAIIKKEAKHLPFIGWSMWFSEYVFLERRWNKDEQTLKSGFKRLVDFPMPFWLALYVE-GTRF 179 (392)
Q Consensus 118 ~~v~K~~L~~iP~~Gw~~~~~~~ifv~R~~~~d~~~i~~~~~~l~~~~~~~~llIFPE-GTR~ 179 (392)
--+.-.+....|++--+-....-|.++++-.-+.+.+..+++.+.+.|++ =++..| |++.
T Consensus 125 ~kIgs~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~--~i~L~~Rg~~~ 185 (276)
T 1vs1_A 125 LQIGARNMQNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNW--QVVLVERGIRT 185 (276)
T ss_dssp EEECGGGTTCHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCC--CEEEEECCBCC
T ss_pred EEECcccccCHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCC--eEEEEeCCcCC
Confidence 34556666677777776677777777877654666777777777776664 245566 7754
Done!