RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016254
(392 letters)
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 613 bits (1583), Expect = 0.0
Identities = 256/342 (74%), Positives = 292/342 (85%)
Query: 31 AVLFILVRPASKRVYRRINKIIVELLWLELIWLIDWWACIKVELYADAETFQLMGKEHAL 90
AV FILVRP SK +YRRIN+ + ELLWLELIWL+DWWA +KV+LYAD ETF+LMGKEHAL
Sbjct: 28 AVCFILVRPLSKSLYRRINRAVAELLWLELIWLVDWWAGVKVQLYADEETFELMGKEHAL 87
Query: 91 VICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLERRWNKD 150
VI NHRSDIDWLVGW++AQR GCLGS LA++KK +K LP IGWSMWFSEYVFLER W KD
Sbjct: 88 VISNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYVFLERSWAKD 147
Query: 151 EQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLIPRTKGF 210
E TLKSGF+RL DFP PFWLAL+VEGTRFT+AKLLAAQEYA SRGLP+PRNVLIPRTKGF
Sbjct: 148 ENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASRGLPVPRNVLIPRTKGF 207
Query: 211 VSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQPSVVNVEIRRHSMEELPKTADGI 270
VSAV+NMRSFVPAIYD TVAVPK QP PTM+R+FRGQ SVV+V I+RHSM+ELP+T DGI
Sbjct: 208 VSAVSNMRSFVPAIYDVTVAVPKGQPAPTMLRIFRGQSSVVHVHIKRHSMKELPETDDGI 267
Query: 271 AQWCKDVFVTKDALLEKYLSRDTFGLQERQDIGRPKKSLFVVVSWSCLLIFILVKLFQWT 330
AQWCKDVFV KDALL+K+ + DTFG QE QDIGRPKKSL VV+SW+CLLI +K QW
Sbjct: 268 AQWCKDVFVAKDALLDKHFAEDTFGDQEYQDIGRPKKSLIVVISWACLLILGAIKFLQWL 327
Query: 331 SILASWAAIAFSAFFLLLVVGVMQILIQSSESEHSTPLKITP 372
S+L+SW IA A L++V +MQILI+SS+SE STP K
Sbjct: 328 SLLSSWKGIASLAAGLVIVTILMQILIESSQSERSTPAKAAN 369
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 237 bits (607), Expect = 1e-77
Identities = 87/195 (44%), Positives = 124/195 (63%), Gaps = 3/195 (1%)
Query: 62 WLIDWWACIKVELYADAETFQLMGKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAII 121
+L +W + +KV +Y D + KE AL+I NHRS++DWLV W++A R G LG ++
Sbjct: 2 FLFEWLSGVKVVVYGDEP---KLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVL 58
Query: 122 KKEAKHLPFIGWSMWFSEYVFLERRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTE 181
K K+ P GW E++FL+R+W KDE+T+K KRL D P PFWL ++ EGTRFTE
Sbjct: 59 KDSLKYPPLGGWGWQLGEFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTE 118
Query: 182 AKLLAAQEYALSRGLPIPRNVLIPRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMV 241
K +QE+A GLP ++VL+PRTKGFV+ + +R V A+YD T+A P +PP
Sbjct: 119 EKKERSQEFAEKNGLPPLKHVLLPRTKGFVAILETLRDAVDAVYDVTIAYPDGKPPSEQR 178
Query: 242 RMFRGQPSVVNVEIR 256
+ G+P V+V +R
Sbjct: 179 LLLGGKPREVHVHVR 193
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 181 bits (462), Expect = 9e-54
Identities = 87/266 (32%), Positives = 142/266 (53%), Gaps = 6/266 (2%)
Query: 85 GKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLE 144
+E L+I NHR+++DW+ W +A RKGCLG ++K LP GW+ E++ +E
Sbjct: 90 PEERVLLIANHRTEVDWMYLWDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVE 149
Query: 145 RRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLI 204
R+W DE ++ D P WLAL+ EGT +TEAK +Q++A GLPI NVL+
Sbjct: 150 RKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLPILNNVLL 209
Query: 205 PRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQPSVVNVEIRRHSMEELP 264
P+TKGFVS + +R + A+YD T+ K + P + +F PS V++ IRR ++++P
Sbjct: 210 PKTKGFVSCLQELRCSLDAVYDVTIGY-KHRCPSFLDNVFGIDPSEVHIHIRRIPLKQIP 268
Query: 265 KTADGIAQWCKDVFVTKDALLEKYLSRDTFGLQERQDIGRPKKSL---FVVVSWSCLLIF 321
+ D ++ W D F KD LL + ++ F + + K L V++ + + +
Sbjct: 269 TSEDEVSAWLMDRFQLKDQLLSDFYAQGHFPNEGTEGELSTLKCLANFLAVIALTTVFTY 328
Query: 322 ILVKLFQWTSILASWAA--IAFSAFF 345
+ + W I S + + + F
Sbjct: 329 LTLFSSVWFKIYVSLSCAYLTSATHF 354
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 82.4 bits (204), Expect = 2e-19
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 89 ALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLERRWN 148
ALV+ NH+S +D LV + RK +A KKE ++P +GW + +F++R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVA--KKELFYVPLLGWLLRLLGAIFIDRSNG 58
Query: 149 -KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEYALSRGLPIPRNVLIPRT 207
K L+ + L + WL ++ EGTR KLL ++ A L ++P
Sbjct: 59 RKARAALREAVELLKE---GEWLLIFPEGTRSRPGKLLPFKKGAARLALE-AGVPIVPVA 114
Query: 208 KGF 210
Sbjct: 115 IRG 117
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 69.9 bits (171), Expect = 1e-13
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 30 SAVLFILVRP--ASKRVYRRINKIIVELLWLELIWLIDWWACIKVELYADAETFQLMGKE 87
V+ L+ P + R+ + ++ L+ L+ ++VE+ G E
Sbjct: 8 ILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVE---------GLE 58
Query: 88 H------ALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYV 141
+ ALV+ NH+S +D L+ + R+G + KKE +P +GW + +
Sbjct: 59 NLPKGGPALVVANHQSFLDPLLLSLALPRRG---PVRFVAKKELFKVPLLGWLLRLLGAI 115
Query: 142 FLERRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQE-----YALSRGL 196
++R N D++TL++ RL L ++ EGTR + L + AL G+
Sbjct: 116 PVDRE-NPDDETLRAAVARLKAGGR--SLVIFPEGTRSRGGEELLPFKRGAARLALEAGV 172
Query: 197 PI 198
PI
Sbjct: 173 PI 174
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 60.0 bits (146), Expect = 3e-11
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 89 ALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSMWFSEYVFLERRWN 148
A+V+ NH+S +D L+ ++ ++G +A K E +LP +GW M +F++R+
Sbjct: 16 AIVVANHQSYLDPLLLSLLLPKRGRPLVFVA--KDELLNLPLLGWLMRLLGCIFIDRKNA 73
Query: 149 KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL 185
KD L+ + EGTR +LL
Sbjct: 74 KDAANTLEYLVELLREGELVLIFP--EGTRSRGGELL 108
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 62.6 bits (153), Expect = 5e-11
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 53/231 (22%)
Query: 90 LVICNHRSDIDWLVGWVVAQRKGCLGSTLAI------IKKEAKHLPFIGWSMWFSEYVFL 143
LVI NH+S +D LV V R+ I +K+E +PF+G + W ++ F+
Sbjct: 90 LVISNHQSWVDILVLQYVFNRR--------IPMLKFFLKQELIWVPFLGLAWWALDFPFM 141
Query: 144 ER-----------RWNKD-EQTLKS--GFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQ- 188
+R KD E T ++ FKR MP + +VEGTRFT K Q
Sbjct: 142 KRYSKAYLAKNPELKGKDLETTRRACEKFKR-----MPTTIVNFVEGTRFTPEKHQQQQS 196
Query: 189 EYALSRGLPIPRNVLIPRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQP 248
Y +++L P+ G A+N M + D T+ P P+ + G+
Sbjct: 197 PY---------QHLLKPKAGGIAFALNAMGEQFDGLLDVTIVYP--DGRPSFWDLLSGRV 245
Query: 249 SVVNVEIRRHSMEELPKT---AD-----GIAQWCKDVFVTKDALLEKYLSR 291
+ V +R + E D QW ++ KD L+E+ L++
Sbjct: 246 KKIVVHVRLLPIPEELIGDYFNDKEFRRRFQQWLNQLWQEKDQLIEQLLAQ 296
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 51.1 bits (123), Expect = 1e-07
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 66 WWACIKVELYADAETFQLMGKEH------ALVICNHRSDIDWLVGWVVAQRKGCLGSTLA 119
++V + G E+ +++ NH+S +D LV R
Sbjct: 6 RLLGVRVRVE---------GLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIR-----F 51
Query: 120 IIKKEAKHLPFIGWSMWFSEYVFLER-RWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTR 178
+ KKE +PF+GW + + ++R + L+ + L + + ++ EGTR
Sbjct: 52 VAKKELFKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALKE---GESVVIFPEGTR 108
Query: 179 FTEAKLL 185
+ +LL
Sbjct: 109 SRDGELL 115
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 44.6 bits (106), Expect = 9e-06
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 70 IKVELYADAETFQLMGKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLP 129
+KVE+ L K LV+ NH+S++D L I KKE K +P
Sbjct: 2 LKVEVVG---PENLPAKSPVLVVANHQSNLDPLTLSAAFPPPIVF-----IAKKELKWIP 53
Query: 130 FIGWSMWFSEYVFLERRWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL---- 185
F G +W + +F++R + T ++ ++ EGTR +L
Sbjct: 54 FFGIMLWLTGAIFIDRENIRAIATALKAAIEVLKQGRSIG--VFPEGTRSRGRDILPFKK 111
Query: 186 AAQEYALSRGLPI 198
A A+ G+PI
Sbjct: 112 GAFHIAIKAGVPI 124
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 35.1 bits (81), Expect = 0.027
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 90 LVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEA--KHLPFIGWSMWFSEYVFLERRW 147
L + NH S D L+ +++ +R L + + E + PF ++R
Sbjct: 29 LFVSNHSSWWDGLILFLLLERG--LRRDVYGLMDEELLERYPFFTR----LGAFSVDRDS 82
Query: 148 NK-DEQTLKSGFKRLVDFPMPFWLALYVEGTR 178
+ ++LK + L W+ EGTR
Sbjct: 83 PRSAAKSLKYVARLLSKPGSVVWIFP--EGTR 112
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 32.4 bits (74), Expect = 0.30
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 38/146 (26%)
Query: 65 DWWACIKVELYADAETFQLMGKEH-------ALVICNHRS--DIDWLVGWVVAQRKGCLG 115
WA + + E + G E+ A+ + NH+S DI L LG
Sbjct: 24 KVWATLSTSPFYKIE---VEGLENLPSPDEPAVYVSNHQSFLDIYTLFH---------LG 71
Query: 116 STLAIIKKEAKHL-PFIGWSMWFSEYVFLERRWNKDE-QTLKSGFKRLVD------FPMP 167
I K + L P IGW+M+ + ++ L+R + + + LK + L FP
Sbjct: 72 RPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQLECLKRCMELLKKGASVFFFP-- 129
Query: 168 FWLALYVEGTRFTEAKLLAAQEYALS 193
EGTR + KL A ++ A S
Sbjct: 130 -------EGTRSKDGKLAAFKKGAFS 148
>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic
class II alpha-mannosidases; glycoside hydrolase family
38 (GH38). The family corresponds to a group of
eukaryotic class II alpha-mannosidases (AlphaMII), which
contain Golgi alpha-mannosidases II (GMII), the major
broad specificity lysosomal alpha-mannosidases (LAM,
MAN2B1), the noval core-specific lysosomal alpha
1,6-mannosidases (Epman, MAN2B2), and similar proteins.
GMII catalyzes the hydrolysis of the terminal both
alpha-1,3-linked and alpha-1,6-linked mannoses from the
high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to
yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc,
N-acetylglucosmine), which is the committed step of
complex N-glycan synthesis. LAM is a broad specificity
exoglycosidase hydrolyzing all known alpha 1,2-, alpha
1,3-, and alpha 1,6-mannosidic linkages from numerous
high mannose type oligosaccharides. Different from LAM,
Epman can efficiently cleave only the alpha 1,6-linked
mannose residue from (Man)3GlcNAc, but not
(Man)3(GlcNAc)2 or other larger high mannose
oligosaccharides, in the core of N-linked glycans.
Members in this family are retaining glycosyl hydrolases
of family GH38 that employs a two-step mechanism
involving the formation of a covalent glycosyl enzyme
complex. Two carboxylic acids positioned within the
active site act in concert: one as a catalytic
nucleophile and the other as a general acid/base
catalyst.
Length = 258
Score = 31.4 bits (72), Expect = 0.65
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 137 FSEYVFLERRWNKDEQTLKSGFKRLVD 163
++E FLER W K FK+LV
Sbjct: 48 WAEIGFLERWWEDQGNDTKQQFKKLVK 74
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 31.1 bits (70), Expect = 0.74
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 76 ADAETFQLMGKEHALVICNHRSDIDWLVGWVVAQRKGCLGSTLAIIKKEAKHLPFIGWSM 135
ADAE++ +A+ I NH+++ D + + Q T+ + KK +PF G
Sbjct: 59 ADAESYG-----NAIYIANHQNNYDMVTASNIVQP-----PTVTVGKKSLLWIPFFGQLY 108
Query: 136 WFSEYVFLER-RWNKDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLL----AAQEY 190
W + + ++R K T+ + W ++ EGTR LL A
Sbjct: 109 WLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIW--MFPEGTRSRGRGLLPFKTGAFHA 166
Query: 191 ALSRGLPI 198
A++ G+PI
Sbjct: 167 AIAAGVPI 174
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 31.0 bits (71), Expect = 1.3
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 317 CLLIFILVKLFQWTSILASWAAIAFSAFFLLLVVGVM 353
+++ L+Q+T S AA+ + FL L++G++
Sbjct: 310 FFPPIVVLSLWQFT-QADSAAAVVLAVVFLALLLGLL 345
>gnl|CDD|182171 PRK09966, PRK09966, putative inner membrane diguanylate cyclase;
Provisional.
Length = 407
Score = 30.7 bits (69), Expect = 1.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 33 LFILVRPASKRVYRRINKIIVELLWLELIWLI 64
+ RP KR R I+ + + + LIWL+
Sbjct: 5 NSLNKRPTFKRALRNISMTSI-FITMMLIWLL 35
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain.
Length = 410
Score = 30.5 bits (69), Expect = 1.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 228 TVAVPKSQPPPTMVRMFRGQPSVVNVEIRRHSME 261
+VA P P P MVR F SV+ E RR +ME
Sbjct: 206 SVAGP--HPYPMMVRDFH---SVIGKETRRQAME 234
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 29.1 bits (66), Expect = 3.2
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 90 LVICNHRSDIDWLVGWVVAQRKGCLGSTLAII-KKEAKHLPFIGWSMWFSEYVFLERRWN 148
+++ NH S ID L+ + +I+ KKE LPFIG + +F++R
Sbjct: 27 IIVANHTSFIDPLI---LFSDLFP-----SIVAKKELGKLPFIGTILRALGCIFVDRSEP 78
Query: 149 KDEQ 152
KD +
Sbjct: 79 KDRK 82
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 29.3 bits (66), Expect = 3.7
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 308 SLFVVVSWSCLLIFILVKLFQWTSILA-----SWAAIAFSAFFLLL 348
++F+V+ + ++F+ V+L ++S+L+ W + F++ FL +
Sbjct: 525 NIFLVLCF--PVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCI 568
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Streptococcus aureus MepA. The integral membrane
proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. This subfamily includes Streptococcus aureus
MepA and Vibrio vulnificus VmrA and functions most
likely as a multidrug efflux pump.
Length = 426
Score = 29.0 bits (66), Expect = 4.2
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 300 QDIGRPKKSLFVVVSWSCL----LIFILVKLFQWTSILASWAAIAFSAFFLLLVVGVM 353
Q IG+ K++ + + L L+ IL +LF I W A + LL+ ++
Sbjct: 370 QAIGKAKRAALLSLLRQGLFLIPLLLILPRLFGLDGI---WLAFPLAEILTLLLALIL 424
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 29.1 bits (66), Expect = 4.9
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 236 PPPTMVRMFRGQPSVVNVEIRRHSME---ELP 264
P P MVR F+ SV+ E R +E LP
Sbjct: 203 PFPMMVRDFQ---SVIGEEAREQFLEMTGRLP 231
>gnl|CDD|237448 PRK13614, PRK13614, lipoprotein LpqB; Provisional.
Length = 573
Score = 29.1 bits (65), Expect = 5.0
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 207 TKGFVSAVNNMRSFVP-----AIYDCTVAVPKSQPPPTMVRM-------FRGQPSVVNVE 254
F S + R VP A D + RM R QP VVNVE
Sbjct: 226 ASAFPSGIKLARESVPVVSGTATVDLSAKELDEASAEDRQRMQQQLQLTLRAQPDVVNVE 285
Query: 255 IR 256
+R
Sbjct: 286 LR 287
>gnl|CDD|182188 PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional.
Length = 258
Score = 28.8 bits (64), Expect = 5.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 134 SMWFSEYVFLERRWNKDEQTLKSGFKRLVDFPMPF 168
SM F EY FL R E+ + GF R V+F P+
Sbjct: 9 SMLFGEYDFLARF----EKAAQCGF-RGVEFMFPY 38
>gnl|CDD|171438 PRK12363, PRK12363, phosphoglycerol transferase I; Provisional.
Length = 703
Score = 28.7 bits (64), Expect = 6.2
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 305 PKKSLFVVVSWSCLLIFILVKLFQWTSILASWAAIAFSAFFLLLVVGVMQ 354
++F+ + L ++ ++ A F+ F +LVV + Q
Sbjct: 73 GYIAVFIGMILLSLSPLFAFRVRRFRRPRGGGA--LFAGFVFMLVVTIAQ 120
>gnl|CDD|235767 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 28.5 bits (64), Expect = 6.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 308 SLFVVVSWSCLLIFILVKLFQWTSILAS--WAAIAFSAFFLLLVVGVMQILIQS 359
S FV+V+ L+ ++ KLF S S IA S L +V GV+ L+Q+
Sbjct: 241 SKFVLVA----LMLVIFKLFGGLSYFPSAQGVLIALS--VLAMVFGVVMALLQT 288
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 28.5 bits (64), Expect = 6.9
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 21/72 (29%)
Query: 63 LIDWWACIKVELYADAETFQLMGKEHALVICNHRSDIDWL-----VGWVVAQRKGCLGST 117
+I+WW + E Y E+ A+ S+ D L VG K G+
Sbjct: 291 MIEWWGPVIYEYYGSTES-------GAVTFAT--SE-DALSHPGTVG------KAAPGAE 334
Query: 118 LAIIKKEAKHLP 129
L + ++ + LP
Sbjct: 335 LRFVDEDGRPLP 346
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 28.3 bits (63), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 124 EAKHLPFIGWSMWFSEYVFLERRWNKDEQTLKSGFKR 160
+A LP IGW ++++ V L++RW+ +SG
Sbjct: 520 KAGSLP-IGWLTFYNQTVALDKRWHVLGLGHESGVGA 555
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 28.0 bits (63), Expect = 9.0
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 269 GIAQWCKDVFVTKDALLEKYLSRDTFGLQERQDIGRPKKSLFVVVSWSCL-LIFILVKLF 327
A + + E L RDT E + R + L WS L L+ +L+ +
Sbjct: 187 LGAYYLGKKERKRLGEGELELERDTLEELEAEYEIRKRPLLS----WSNLALVLVLMLVL 242
Query: 328 QWTSILASWAAIAFSAFFLLLVV 350
+ W A+ L L++
Sbjct: 243 LLLGLWPGWVAL-LIGILLALLI 264
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 27.5 bits (62), Expect = 9.9
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 315 WSCLLIFILVKLFQWTSI--LASWAAIAFSAFFLLLVVGVMQILIQSS 360
IF + L+ T+ L+ F+ L+V ++ I + SS
Sbjct: 101 LGTAAIFGGLSLYALTTKRDLSFLGGFLFAGLIGLIVASLVNIFLPSS 148
>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain
of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9
alpha-mannosidase III, and similar proteins; glycoside
hydrolase family 38 (GH38). This subfamily is
represented by Golgi alpha-mannosidase II (GMII, also
known as mannosyl-oligosaccharide 1,3- 1,6-alpha
mannosidase, EC 3.2.1.114, Man2A1), a monomeric,
membrane-anchored class II alpha-mannosidase existing in
the Golgi apparatus of eukaryotes. GMII plays a key role
in the N-glycosylation pathway. It catalyzes the
hydrolysis of the terminal both alpha-1,3-linked and
alpha-1,6-linked mannoses from the high-mannose
oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield
GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which
is the committed step of complex N-glycan synthesis.
GMII is activated by zinc or cobalt ions and is strongly
inhibited by swainsonine. Inhibition of GMII provides a
route to block cancer-induced changes in cell surface
oligosaccharide structures. GMII has a pH optimum of
5.5-6.0, which is intermediate between those of acidic
(lysosomal alpha-mannosidase) and neutral (ER/cytosolic
alpha-mannosidase) enzymes. GMII is a retaining glycosyl
hydrolase of family GH38 that employs a two-step
mechanism involving the formation of a covalent glycosyl
enzyme complex; two carboxylic acids positioned within
the active site act in concert: one as a catalytic
nucleophile and the other as a general acid/base
catalyst. This subfamily also includes human
alpha-mannosidase 2x (MX, also known as
mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC
3.2.1.114, Man2A2). MX is enzymatically and functionally
very similar to GMII, and is thought to also function in
the N-glycosylation pathway. Also found in this
subfamily is class II alpha-mannosidase encoded by
Spodoptera frugiperda Sf9 cell. This alpha-mannosidase
is an integral membrane glycoprotein localized in the
Golgi apparatus. It shows high sequence homology with
mammalian Golgi alpha-mannosidase II(GMII). It can
hydrolyze p-nitrophenyl alpha-D-mannopyranoside
(pNP-alpha-Man), and it is inhibited by swainsonine.
However, the Sf9 enzyme is stimulated by cobalt and can
hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it
cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is
distinct from that of GMII. Thus, this enzyme has been
designated as Sf9 alpha-mannosidase III (SfManIII). It
probably functions in an alternate N-glycan processing
pathway in Sf9 cells.
Length = 340
Score = 28.0 bits (63), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 135 MWFSEYVFLERRWNKDEQTLKSGFKRLVD 163
+W +E FLER W+ K K+LV
Sbjct: 48 IW-AEISFLERWWDDASPDKKEAVKKLVK 75
>gnl|CDD|233183 TIGR00916, 2A0604s01, protein-export membrane protein, SecD/SecF
family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY
proteins form the protein translocation appartus in
prokaryotes. This family is specific for the SecD and
SecF proteins [Protein fate, Protein and peptide
secretion and trafficking].
Length = 192
Score = 27.6 bits (62), Expect = 10.0
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 306 KKSLFVVVSWSCLLIFILVKL-FQWTSILASWAAIAFSAFFLLLVVGVMQI 355
K + ++ +L+ + + L ++W +A+ AA+ +L V+ +
Sbjct: 47 KAGIIALL-IGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGA 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.433
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,377,503
Number of extensions: 2020566
Number of successful extensions: 2806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2780
Number of HSP's successfully gapped: 82
Length of query: 392
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 293
Effective length of database: 6,546,556
Effective search space: 1918140908
Effective search space used: 1918140908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)