RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 016254
         (392 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 21/235 (8%), Positives = 64/235 (27%), Gaps = 40/235 (17%)

Query: 86  KEHALVICNHRSDIDWLVGWVVAQRKGC--LGSTLAIIKKEAKHLPFIGWSMWFSEYVFL 143
             + ++I NH+++ D  +  ++ ++       +T+ +        P           + +
Sbjct: 129 GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICV 188

Query: 144 ERRWN-------------KDEQTLKSGFKRLVDFPMPFWLALYVEGTRFTEAKLLAAQEY 190
             + +              + ++LK     L       W  +   G R            
Sbjct: 189 YSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIW--IAPSGGRDRPDP------- 239

Query: 191 ALSRGLPIPRNVLIPRTKGFVSAVNNMRSFVPAIYDCTVAVPKSQPPPTMVRMFRGQPSV 250
                           +   +  +         ++   +      PPP+ V +  G+  V
Sbjct: 240 ---STGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRV 296

Query: 251 VN---VEIR----------RHSMEELPKTADGIAQWCKDVFVTKDALLEKYLSRD 292
           +      +             + +   +  +  ++   D    +  +L+  +S  
Sbjct: 297 IAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGK 351


>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 27.1 bits (60), Expect = 1.6
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 230 AVPKSQPPPTMVRMFRGQPSVVNVEIRRHSMEELPKT 266
           ++ + + P  + R+  G    +++E  R      PK 
Sbjct: 44  SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKG 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,497,220
Number of extensions: 70533
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)