Query 016255
Match_columns 392
No_of_seqs 276 out of 1775
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 3.6E-16 1.2E-20 126.5 6.5 80 308-388 11-90 (91)
2 1x4j_A Ring finger protein 38; 99.5 1.1E-14 3.7E-19 113.0 4.6 56 333-389 19-74 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3E-14 1E-18 103.8 3.8 52 335-386 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.4 6.8E-14 2.3E-18 107.8 5.6 55 334-389 12-66 (74)
5 2ect_A Ring finger protein 126 99.4 6.7E-14 2.3E-18 108.9 5.0 56 334-390 12-67 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 9.9E-14 3.4E-18 105.6 5.7 55 334-389 11-65 (69)
7 1v87_A Deltex protein 2; ring- 99.4 2E-13 6.9E-18 113.4 6.2 68 315-388 9-95 (114)
8 2ecm_A Ring finger and CHY zin 99.4 1.2E-13 4.3E-18 100.3 4.3 51 336-386 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.4 1.5E-13 5.2E-18 109.1 3.0 52 336-387 14-76 (81)
10 3ng2_A RNF4, snurf, ring finge 99.4 2.3E-13 7.9E-18 103.5 3.5 57 334-390 7-66 (71)
11 2ea6_A Ring finger protein 4; 99.3 4.4E-13 1.5E-17 101.0 3.4 54 334-387 12-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.3 1.4E-12 4.8E-17 109.5 4.7 52 335-386 35-100 (106)
13 2xeu_A Ring finger protein 4; 99.3 1.3E-12 4.4E-17 97.1 3.3 54 336-389 2-58 (64)
14 2ct2_A Tripartite motif protei 99.3 3.4E-12 1.2E-16 100.7 5.6 56 334-389 12-70 (88)
15 2djb_A Polycomb group ring fin 99.2 4.8E-12 1.6E-16 97.4 5.1 53 334-389 12-64 (72)
16 2d8t_A Dactylidin, ring finger 99.2 3.2E-12 1.1E-16 98.1 3.1 50 334-387 12-61 (71)
17 2ecn_A Ring finger protein 141 99.2 3E-12 1E-16 97.6 2.7 51 334-389 12-62 (70)
18 2d8s_A Cellular modulator of i 99.2 8E-12 2.7E-16 100.0 4.8 54 334-389 12-72 (80)
19 4a0k_B E3 ubiquitin-protein li 99.2 6.5E-13 2.2E-17 113.8 -1.8 52 335-386 46-111 (117)
20 2ysl_A Tripartite motif-contai 99.2 9.7E-12 3.3E-16 95.1 4.5 53 334-390 17-72 (73)
21 1chc_A Equine herpes virus-1 r 99.2 1.1E-11 3.6E-16 93.8 4.4 49 336-387 4-52 (68)
22 2yur_A Retinoblastoma-binding 99.2 1.6E-11 5.6E-16 95.2 4.5 52 334-389 12-66 (74)
23 2csy_A Zinc finger protein 183 99.2 1.5E-11 5E-16 96.6 4.2 48 335-386 13-60 (81)
24 2ecy_A TNF receptor-associated 99.2 1.6E-11 5.4E-16 92.8 4.1 51 335-389 13-64 (66)
25 4ayc_A E3 ubiquitin-protein li 99.1 9.6E-12 3.3E-16 107.5 2.6 48 336-387 52-99 (138)
26 1g25_A CDK-activating kinase a 99.1 2.2E-11 7.4E-16 91.8 3.9 53 337-389 3-57 (65)
27 2ecw_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 93.5 4.7 52 334-389 16-73 (85)
28 1t1h_A Gspef-atpub14, armadill 99.1 3.9E-11 1.3E-15 93.2 4.4 52 334-389 5-57 (78)
29 2ecv_A Tripartite motif-contai 99.1 4.9E-11 1.7E-15 92.8 4.8 52 334-389 16-73 (85)
30 4ap4_A E3 ubiquitin ligase RNF 99.1 2.3E-11 7.8E-16 101.9 2.9 54 336-389 6-62 (133)
31 3lrq_A E3 ubiquitin-protein li 99.1 2.2E-11 7.6E-16 99.9 2.1 52 335-389 20-72 (100)
32 2egp_A Tripartite motif-contai 99.1 1.8E-11 6.3E-16 94.8 1.3 52 334-389 9-67 (79)
33 2ysj_A Tripartite motif-contai 99.0 1.2E-10 4.2E-15 87.0 4.5 44 334-381 17-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.0 5.8E-11 2E-15 96.5 2.4 50 336-388 21-70 (99)
35 3ztg_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 92.7 4.6 49 334-386 10-61 (92)
36 2ckl_A Polycomb group ring fin 99.0 7.7E-11 2.6E-15 97.3 2.8 52 334-388 12-63 (108)
37 2ecj_A Tripartite motif-contai 99.0 1.8E-10 6.1E-15 84.1 3.8 44 334-381 12-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 98.3 3.1 49 335-387 50-99 (124)
39 1jm7_A BRCA1, breast cancer ty 99.0 1.7E-10 6E-15 94.8 3.8 50 336-389 20-72 (112)
40 4ap4_A E3 ubiquitin ligase RNF 99.0 8.5E-11 2.9E-15 98.4 2.0 55 335-389 70-127 (133)
41 2ct0_A Non-SMC element 1 homol 99.0 3.4E-10 1.2E-14 89.7 4.4 51 335-388 13-65 (74)
42 2ckl_B Ubiquitin ligase protei 99.0 3.1E-10 1E-14 100.4 4.0 49 336-387 53-102 (165)
43 1z6u_A NP95-like ring finger p 98.9 3.4E-10 1.2E-14 99.8 3.2 49 336-388 77-126 (150)
44 3hct_A TNF receptor-associated 98.9 3.3E-10 1.1E-14 95.2 2.4 51 334-388 15-66 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 1.7E-10 5.8E-15 96.1 -0.3 48 335-386 13-61 (115)
46 1rmd_A RAG1; V(D)J recombinati 98.9 6.6E-10 2.2E-14 92.7 2.6 50 336-389 22-72 (116)
47 1e4u_A Transcriptional repress 98.9 1.5E-09 5.1E-14 86.2 4.3 56 334-389 8-64 (78)
48 2kr4_A Ubiquitin conjugation f 98.8 1.4E-09 4.8E-14 87.1 3.6 50 335-388 12-61 (85)
49 2kre_A Ubiquitin conjugation f 98.8 2E-09 6.9E-14 89.1 4.1 51 335-389 27-77 (100)
50 1wgm_A Ubiquitin conjugation f 98.8 2.3E-09 8E-14 88.4 4.2 51 335-389 20-71 (98)
51 2vje_A E3 ubiquitin-protein li 98.8 1.6E-09 5.4E-14 82.5 2.9 50 335-386 6-56 (64)
52 3knv_A TNF receptor-associated 98.8 1.3E-09 4.5E-14 95.2 2.6 49 334-386 28-77 (141)
53 1jm7_B BARD1, BRCA1-associated 98.8 1.6E-09 5.6E-14 90.8 1.8 49 336-389 21-69 (117)
54 1bor_A Transcription factor PM 98.8 2.2E-09 7.5E-14 79.3 2.0 48 335-389 4-51 (56)
55 2y1n_A E3 ubiquitin-protein li 98.7 3.7E-09 1.3E-13 106.8 3.8 47 337-387 332-379 (389)
56 2vje_B MDM4 protein; proto-onc 98.7 4.9E-09 1.7E-13 79.5 2.8 49 336-386 6-55 (63)
57 2c2l_A CHIP, carboxy terminus 98.7 6.5E-09 2.2E-13 97.0 3.8 50 335-388 206-256 (281)
58 4ic3_A E3 ubiquitin-protein li 98.6 4.4E-09 1.5E-13 81.9 0.7 43 336-386 23-66 (74)
59 3hcs_A TNF receptor-associated 98.6 1.2E-08 4.2E-13 90.3 2.4 51 334-388 15-66 (170)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.5E-08 5.2E-13 82.3 2.1 47 335-384 5-59 (94)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.1E-08 3.8E-13 102.0 1.5 53 335-387 306-373 (381)
62 2ecg_A Baculoviral IAP repeat- 98.5 6.4E-08 2.2E-12 75.2 2.8 43 337-387 25-68 (75)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.2E-07 4.2E-12 71.7 3.5 47 336-386 5-58 (60)
64 2f42_A STIP1 homology and U-bo 98.4 8E-08 2.7E-12 87.7 3.0 50 335-388 104-154 (179)
65 2ea5_A Cell growth regulator w 98.4 2E-07 6.9E-12 71.8 4.0 44 336-387 14-58 (68)
66 1wim_A KIAA0161 protein; ring 98.4 1.2E-07 4E-12 76.5 2.4 48 336-384 4-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.3 8.8E-08 3E-12 75.8 0.1 43 336-386 17-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 2.1E-07 7.3E-12 70.5 1.6 49 338-389 4-52 (61)
69 3htk_C E3 SUMO-protein ligase 98.2 4.6E-07 1.6E-11 87.3 2.6 51 335-388 179-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.3E-07 7.9E-12 92.3 0.4 43 336-386 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.8 1.1E-05 3.7E-10 67.4 3.8 45 339-386 3-48 (101)
72 3nw0_A Non-structural maintena 97.4 7.4E-05 2.5E-09 70.7 3.1 49 336-387 179-229 (238)
73 2ko5_A Ring finger protein Z; 95.5 0.0036 1.2E-07 51.7 1.2 47 336-388 27-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.9 0.069 2.3E-06 42.8 3.4 36 336-372 2-38 (101)
75 2lri_C Autoimmune regulator; Z 92.4 0.074 2.5E-06 40.7 2.8 48 335-386 10-61 (66)
76 1we9_A PHD finger family prote 89.1 0.088 3E-06 39.3 0.4 50 335-384 4-58 (64)
77 2l5u_A Chromodomain-helicase-D 86.7 0.36 1.2E-05 36.0 2.5 47 334-384 8-58 (61)
78 1wil_A KIAA1045 protein; ring 86.0 0.83 2.8E-05 37.1 4.4 36 334-371 12-47 (89)
79 2k16_A Transcription initiatio 86.0 0.2 7E-06 38.5 0.8 51 336-387 17-71 (75)
80 1wep_A PHF8; structural genomi 85.0 0.75 2.6E-05 35.8 3.7 49 337-386 12-65 (79)
81 2xb1_A Pygopus homolog 2, B-ce 82.0 0.25 8.6E-06 40.9 -0.2 51 337-387 3-64 (105)
82 1mm2_A MI2-beta; PHD, zinc fin 80.8 0.36 1.2E-05 36.1 0.3 48 335-386 7-58 (61)
83 2kgg_A Histone demethylase jar 80.4 1.3 4.6E-05 31.8 3.2 44 339-382 4-52 (52)
84 3i2d_A E3 SUMO-protein ligase 78.3 1.3 4.6E-05 44.4 3.6 48 337-388 249-301 (371)
85 2yql_A PHD finger protein 21A; 76.0 0.36 1.2E-05 35.3 -1.0 46 334-383 6-55 (56)
86 2puy_A PHD finger protein 21A; 75.8 0.27 9.1E-06 36.4 -1.7 48 336-387 4-55 (60)
87 2l43_A N-teminal domain from h 75.8 0.83 2.8E-05 36.6 1.0 53 335-387 23-78 (88)
88 1f62_A Transcription factor WS 75.8 1.1 3.7E-05 31.8 1.5 44 339-383 2-49 (51)
89 3v43_A Histone acetyltransfera 75.2 2.9 9.8E-05 34.5 4.2 34 336-369 4-42 (112)
90 4fo9_A E3 SUMO-protein ligase 74.8 2 6.9E-05 42.9 3.7 49 337-389 215-268 (360)
91 2ku3_A Bromodomain-containing 74.6 0.9 3.1E-05 35.1 0.9 50 335-384 14-66 (71)
92 1wee_A PHD finger family prote 73.5 0.56 1.9E-05 35.9 -0.5 50 337-387 16-69 (72)
93 1xwh_A Autoimmune regulator; P 73.3 0.69 2.4E-05 34.9 -0.0 47 335-385 6-56 (66)
94 2yt5_A Metal-response element- 72.9 0.66 2.3E-05 34.6 -0.2 51 335-385 4-62 (66)
95 2vpb_A Hpygo1, pygopus homolog 72.9 2.3 7.9E-05 32.2 2.8 34 335-368 6-40 (65)
96 1weu_A Inhibitor of growth fam 72.2 0.83 2.9E-05 37.1 0.2 44 337-385 36-86 (91)
97 2lv9_A Histone-lysine N-methyl 71.4 1.3 4.4E-05 36.1 1.2 46 337-384 28-76 (98)
98 1fp0_A KAP-1 corepressor; PHD 70.5 2 6.9E-05 34.7 2.1 47 335-385 23-73 (88)
99 2ri7_A Nucleosome-remodeling f 70.4 0.91 3.1E-05 39.8 0.1 48 336-384 7-59 (174)
100 3m62_A Ubiquitin conjugation f 69.1 2.4 8.1E-05 47.4 3.0 49 336-388 890-939 (968)
101 1wen_A Inhibitor of growth fam 67.9 2.6 9E-05 32.4 2.2 45 336-385 15-66 (71)
102 2e6r_A Jumonji/ARID domain-con 64.9 0.66 2.3E-05 37.5 -1.8 50 334-384 13-66 (92)
103 3v43_A Histone acetyltransfera 64.7 1.5 5.3E-05 36.2 0.3 45 339-383 63-111 (112)
104 2kwj_A Zinc finger protein DPF 63.3 2.2 7.5E-05 35.4 1.0 34 338-371 2-41 (114)
105 1wev_A Riken cDNA 1110020M19; 62.8 1.3 4.4E-05 35.4 -0.5 53 336-388 15-76 (88)
106 2ysm_A Myeloid/lymphoid or mix 62.0 2.1 7.2E-05 35.0 0.7 38 335-373 5-42 (111)
107 1wew_A DNA-binding family prot 61.1 2.8 9.5E-05 32.5 1.2 50 336-387 15-75 (78)
108 3o70_A PHD finger protein 13; 60.7 1.7 5.9E-05 33.1 -0.1 47 335-383 17-66 (68)
109 1wem_A Death associated transc 59.4 3.4 0.00012 31.6 1.4 47 338-386 17-72 (76)
110 2cs3_A Protein C14ORF4, MY039 56.4 6 0.00021 31.9 2.4 38 336-374 14-52 (93)
111 3ql9_A Transcriptional regulat 55.7 13 0.00043 32.0 4.5 47 334-384 54-111 (129)
112 2lbm_A Transcriptional regulat 55.4 12 0.00042 32.6 4.4 47 334-384 60-117 (142)
113 4gne_A Histone-lysine N-methyl 54.8 8.4 0.00029 32.0 3.1 46 334-385 12-63 (107)
114 2rsd_A E3 SUMO-protein ligase 52.4 1.3 4.5E-05 33.5 -2.0 44 338-383 11-64 (68)
115 3kqi_A GRC5, PHD finger protei 52.3 3.7 0.00013 31.5 0.6 49 337-385 9-62 (75)
116 3c6w_A P28ING5, inhibitor of g 51.4 2.4 8.1E-05 31.5 -0.7 41 338-383 10-57 (59)
117 3mpx_A FYVE, rhogef and PH dom 47.8 3.9 0.00013 40.3 0.0 50 336-385 374-430 (434)
118 1y02_A CARP2, FYVE-ring finger 47.6 2.6 8.8E-05 35.9 -1.1 50 336-385 18-67 (120)
119 3asl_A E3 ubiquitin-protein li 47.5 2.7 9.4E-05 32.1 -0.9 45 339-384 20-69 (70)
120 2vnf_A ING 4, P29ING4, inhibit 47.3 4 0.00014 30.2 -0.0 41 338-383 11-58 (60)
121 3shb_A E3 ubiquitin-protein li 47.2 2.7 9.3E-05 32.9 -1.0 44 339-383 28-76 (77)
122 1zbd_B Rabphilin-3A; G protein 44.0 11 0.00037 32.4 2.2 35 335-369 53-88 (134)
123 3t7l_A Zinc finger FYVE domain 43.6 15 0.0005 29.2 2.8 50 336-385 19-74 (90)
124 2g6q_A Inhibitor of growth pro 41.3 4.3 0.00015 30.4 -0.6 41 338-383 12-59 (62)
125 2e6s_A E3 ubiquitin-protein li 40.6 6.6 0.00023 30.6 0.3 46 337-383 26-76 (77)
126 2pv0_B DNA (cytosine-5)-methyl 39.9 21 0.00073 35.9 3.9 46 334-383 90-147 (386)
127 3ask_A E3 ubiquitin-protein li 39.6 7 0.00024 36.7 0.4 47 337-384 174-225 (226)
128 1weo_A Cellulose synthase, cat 39.6 27 0.00092 28.5 3.8 50 337-386 16-69 (93)
129 2yw8_A RUN and FYVE domain-con 39.4 16 0.00053 28.5 2.3 51 336-386 18-74 (82)
130 3a1b_A DNA (cytosine-5)-methyl 39.0 20 0.00069 31.9 3.2 38 333-374 75-114 (159)
131 1x4k_A Skeletal muscle LIM-pro 39.0 20 0.00069 26.0 2.8 40 338-387 6-45 (72)
132 2cu8_A Cysteine-rich protein 2 37.8 16 0.00054 27.1 2.0 40 337-387 9-48 (76)
133 1vfy_A Phosphatidylinositol-3- 37.8 19 0.00064 27.4 2.5 35 337-371 11-45 (73)
134 1dvp_A HRS, hepatocyte growth 36.9 14 0.00047 33.6 1.9 37 336-372 160-196 (220)
135 1wyh_A SLIM 2, skeletal muscle 36.9 17 0.00059 26.4 2.1 41 337-387 5-45 (72)
136 1joc_A EEA1, early endosomal a 36.8 18 0.00063 30.4 2.5 37 336-372 68-104 (125)
137 2gmg_A Hypothetical protein PF 36.7 6.3 0.00022 32.9 -0.4 24 358-386 72-95 (105)
138 1wfk_A Zinc finger, FYVE domai 36.2 23 0.00077 28.1 2.8 50 336-385 8-64 (88)
139 1z2q_A LM5-1; membrane protein 36.1 21 0.0007 27.9 2.6 52 335-386 19-78 (84)
140 3zyq_A Hepatocyte growth facto 35.9 15 0.00052 33.7 2.0 51 336-386 163-221 (226)
141 3kv5_D JMJC domain-containing 34.5 7.3 0.00025 40.2 -0.4 49 337-385 36-89 (488)
142 1x4u_A Zinc finger, FYVE domai 34.4 23 0.00078 27.6 2.6 37 335-371 12-48 (84)
143 2co8_A NEDD9 interacting prote 34.3 24 0.00083 26.8 2.7 41 336-387 14-54 (82)
144 2d8v_A Zinc finger FYVE domain 33.6 21 0.00072 27.5 2.1 32 335-371 6-38 (67)
145 1x63_A Skeletal muscle LIM-pro 33.4 27 0.00091 26.1 2.8 41 337-387 15-55 (82)
146 2dj7_A Actin-binding LIM prote 32.3 23 0.00078 26.9 2.2 40 336-386 14-53 (80)
147 1iml_A CRIP, cysteine rich int 32.1 16 0.00056 27.0 1.3 44 337-385 27-71 (76)
148 2ysm_A Myeloid/lymphoid or mix 31.9 8.5 0.00029 31.3 -0.4 46 339-385 56-105 (111)
149 1x61_A Thyroid receptor intera 31.6 31 0.0011 25.0 2.8 38 338-385 6-43 (72)
150 2jmi_A Protein YNG1, ING1 homo 30.3 11 0.00038 30.4 0.1 43 337-384 26-76 (90)
151 2o35_A Hypothetical protein DU 30.1 19 0.00065 30.0 1.4 12 363-374 43-54 (105)
152 2pk7_A Uncharacterized protein 30.0 12 0.00041 28.8 0.2 16 371-386 4-19 (69)
153 3fyb_A Protein of unknown func 29.9 19 0.00066 29.9 1.4 11 363-373 42-52 (104)
154 2kwj_A Zinc finger protein DPF 29.9 3.9 0.00013 33.9 -2.8 46 339-385 60-109 (114)
155 1g47_A Pinch protein; LIM doma 29.8 30 0.001 25.4 2.5 42 336-387 10-51 (77)
156 3mjh_B Early endosome antigen 29.8 15 0.00052 24.6 0.7 11 377-387 7-17 (34)
157 1z60_A TFIIH basal transcripti 29.7 25 0.00084 26.3 1.9 43 338-381 16-58 (59)
158 2jvx_A NF-kappa-B essential mo 29.5 12 0.00041 24.2 0.1 13 375-387 3-15 (28)
159 3o7a_A PHD finger protein 13 v 28.9 11 0.00038 26.8 -0.1 43 340-383 6-51 (52)
160 1x4l_A Skeletal muscle LIM-pro 28.8 34 0.0012 24.8 2.6 40 337-386 5-46 (72)
161 2zet_C Melanophilin; complex, 28.4 24 0.00084 30.9 2.0 48 336-384 67-117 (153)
162 1x68_A FHL5 protein; four-and- 27.6 35 0.0012 25.2 2.5 39 338-386 6-46 (76)
163 3f6q_B LIM and senescent cell 27.5 33 0.0011 24.6 2.3 42 336-387 10-51 (72)
164 2l3k_A Rhombotin-2, linker, LI 26.2 22 0.00075 29.1 1.2 33 338-372 37-69 (123)
165 1a7i_A QCRP2 (LIM1); LIM domai 25.8 22 0.00074 26.7 1.0 38 338-386 8-45 (81)
166 2jny_A Uncharacterized BCR; st 24.4 11 0.00036 29.0 -1.0 10 376-385 11-20 (67)
167 1x64_A Alpha-actinin-2 associa 23.1 48 0.0016 25.3 2.6 40 336-387 24-63 (89)
168 2jne_A Hypothetical protein YF 22.7 23 0.0008 29.3 0.7 39 338-385 33-71 (101)
169 2d8y_A Eplin protein; LIM doma 20.9 59 0.002 24.8 2.7 39 337-386 15-53 (91)
170 1x4i_A Inhibitor of growth pro 20.7 31 0.0011 26.2 1.0 43 338-385 7-56 (70)
171 1x62_A C-terminal LIM domain p 20.7 42 0.0015 25.0 1.8 39 336-386 14-52 (79)
172 2l4z_A DNA endonuclease RBBP8, 20.1 43 0.0015 27.6 1.8 39 337-386 61-99 (123)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.62 E-value=3.6e-16 Score=126.48 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=65.8
Q ss_pred CCCCCCCCHHHHHhhcccceeecccccCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 308 GSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 308 g~v~tGLSee~I~kll~~~~~~~s~~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
+....+++++.|..++.............+..|+||+++|..++.+..+ +|+|.||..||.+||+.+.+||+||+.+.+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456789999999987665443333445677899999999998888777 799999999999999999999999999865
Q ss_pred C
Q 016255 388 D 388 (392)
Q Consensus 388 ~ 388 (392)
.
T Consensus 90 ~ 90 (91)
T 2l0b_A 90 P 90 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=113.01 Aligned_cols=56 Identities=32% Similarity=0.885 Sum_probs=49.2
Q ss_pred ccCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 333 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 333 ~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
...++..|+||+++|..++.+..+ +|+|.||..||.+||+.+..||+||+.+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 345667899999999998888777 79999999999999999999999999987653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.45 E-value=3e-14 Score=103.75 Aligned_cols=52 Identities=31% Similarity=0.952 Sum_probs=46.3
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.++..|+||++.+..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467899999999998888777459999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.8e-14 Score=107.85 Aligned_cols=55 Identities=35% Similarity=0.958 Sum_probs=48.3
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 34567899999999998888777 89999999999999999999999999986543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=6.7e-14 Score=108.95 Aligned_cols=56 Identities=30% Similarity=0.794 Sum_probs=48.9
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 390 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~~ 390 (392)
...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34567899999999988877777 899999999999999999999999999876543
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=9.9e-14 Score=105.57 Aligned_cols=55 Identities=35% Similarity=0.822 Sum_probs=47.8
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34567899999999888777777 89999999999999999999999999986543
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.41 E-value=2e-13 Score=113.43 Aligned_cols=68 Identities=28% Similarity=0.598 Sum_probs=49.2
Q ss_pred CHHHHHhhcccceeecccccCCCCccceecccccCCC--------------ceEEcccCCccccHHHHHHHH-----hcC
Q 016255 315 SEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMD--------------DVGTLKSCGHDYHVTCIKKWL-----SMK 375 (392)
Q Consensus 315 See~I~kll~~~~~~~s~~~~ed~~C~ICLEdf~~ge--------------~v~~LlpCgH~FH~~CI~kWL-----k~k 375 (392)
.++.+.++..... ...+..|+|||+.|..+. .+.++++|+|.||..||.+|| ..+
T Consensus 9 p~~~i~~~~~~~~------~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~ 82 (114)
T 1v87_A 9 PEQVIRKYTEELK------VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82 (114)
T ss_dssp HHHHHHHHEEECS------SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSC
T ss_pred hHHHHHHHHHhcc------CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCC
Confidence 3456666543221 224568999999997653 344466999999999999999 446
Q ss_pred CCCcccccccCCC
Q 016255 376 NVCPICKASVMAD 388 (392)
Q Consensus 376 nsCPICR~~l~~~ 388 (392)
.+||+||+.+...
T Consensus 83 ~~CP~CR~~~~~~ 95 (114)
T 1v87_A 83 LQCPSCKTIYGEK 95 (114)
T ss_dssp CBCTTTCCBSSSC
T ss_pred CcCCCCCCccCCC
Confidence 7899999987543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=1.2e-13 Score=100.25 Aligned_cols=51 Identities=31% Similarity=0.677 Sum_probs=44.1
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.+..|+||++.+..++...++++|+|.||..||.+|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999776655555589999999999999999999999999874
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=109.07 Aligned_cols=52 Identities=29% Similarity=0.724 Sum_probs=42.1
Q ss_pred CCCccceeccccc-----------CCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYK-----------NMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~-----------~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
++..|+||++.|. .++.++.+++|+|.||..||.+||+.+++||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4556777777764 445577776799999999999999999999999998754
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.36 E-value=2.3e-13 Score=103.51 Aligned_cols=57 Identities=23% Similarity=0.612 Sum_probs=46.6
Q ss_pred cCCCCccceecccccCC---CceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCCC
Q 016255 334 MQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 390 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~g---e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~~ 390 (392)
..++..|+||++.+.++ ....++++|+|.||..||.+|++.+..||+||+.+...+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34567899999999763 2333445899999999999999999999999999876654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=4.4e-13 Score=101.05 Aligned_cols=54 Identities=24% Similarity=0.661 Sum_probs=44.0
Q ss_pred cCCCCccceecccccCC---CceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 334 MQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~g---e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
..+...|+||++.+.+. ....++++|+|.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999864 2233444899999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.29 E-value=1.4e-12 Score=109.53 Aligned_cols=52 Identities=27% Similarity=0.687 Sum_probs=43.4
Q ss_pred CCCCccceecccccCC--------------CceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNM--------------DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~g--------------e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.++..|+||++.|... +.+.++++|+|.||..||.+||+.+.+||+||+++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678899999999864 223445589999999999999999999999999853
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=97.11 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=44.2
Q ss_pred CCCccceecccccCC---CceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 336 EEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 336 ed~~C~ICLEdf~~g---e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
++..|+||++.+.++ ....++++|+|.||..||.+|++.+..||+||+.+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 357899999999763 223334489999999999999999999999999987654
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=100.68 Aligned_cols=56 Identities=29% Similarity=0.598 Sum_probs=46.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC---CCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK---NVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k---nsCPICR~~l~~~~ 389 (392)
..+...|+||++.|...+...++++|+|.||..||.+|++.+ ..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 445678999999999876533445899999999999999876 78999999886554
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.8e-12 Score=97.42 Aligned_cols=53 Identities=25% Similarity=0.505 Sum_probs=44.5
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..++..|+||++.+.++ ..+++|+|.||..||.+|++.+..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34567899999999863 344489999999999999999999999999986654
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.2e-12 Score=98.14 Aligned_cols=50 Identities=22% Similarity=0.526 Sum_probs=42.5
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
..++..|+||++.+.+. ..+ +|+|.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34567899999998753 344 899999999999999999999999998754
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3e-12 Score=97.57 Aligned_cols=51 Identities=29% Similarity=0.839 Sum_probs=43.7
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..++..|+||++.+.. ..+ +|+|.||..||.+|+..+..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3456789999999886 344 89999999999999999999999999987654
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8e-12 Score=99.98 Aligned_cols=54 Identities=22% Similarity=0.612 Sum_probs=44.6
Q ss_pred cCCCCccceecccccCCCceEEcccCC-----ccccHHHHHHHHhcC--CCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMK--NVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCg-----H~FH~~CI~kWLk~k--nsCPICR~~l~~~~ 389 (392)
..++..|.||+++|..++.+ ++ ||. |.||..||++||..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 44567899999999877665 45 896 999999999999876 48999999986543
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.21 E-value=6.5e-13 Score=113.75 Aligned_cols=52 Identities=27% Similarity=0.687 Sum_probs=1.7
Q ss_pred CCCCccceecccccCC-------------C-ceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNM-------------D-DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~g-------------e-~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
..++.|+||+++|... + .+..+++|+|.||..||.+||+.+.+||+||+++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4568899999999752 2 23344589999999999999999999999999853
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.7e-12 Score=95.12 Aligned_cols=53 Identities=36% Similarity=0.702 Sum_probs=43.3
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHh---cCCCCcccccccCCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKASVMADSE 390 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~knsCPICR~~l~~~~~ 390 (392)
..++..|+||++.+.+ ...+ +|+|.||..||.+|++ .+..||+||+.+..++.
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3456789999999885 3344 8999999999999997 35689999999876654
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.19 E-value=1.1e-11 Score=93.84 Aligned_cols=49 Identities=35% Similarity=0.838 Sum_probs=41.6
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
.+..|+||++.+.++ +..+ +|+|.||..||.+|++.+..||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMAL-PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEET-TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEec-CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999998753 3444 899999999999999999999999998753
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=95.18 Aligned_cols=52 Identities=25% Similarity=0.637 Sum_probs=42.3
Q ss_pred cCCCCccceecccccCCCceEEccc-CCccccHHHHHHHHhcC--CCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKS-CGHDYHVTCIKKWLSMK--NVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~Llp-CgH~FH~~CI~kWLk~k--nsCPICR~~l~~~~ 389 (392)
..++..|+||++.|.++ ..+ + |+|.||..||.+|++.+ ..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34567899999999864 234 7 99999999999999875 68999999865443
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=96.59 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=41.4
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.....|+||++.+.++ .+ ++|+|.||..||.+|+.....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4467899999999763 23 489999999999999999999999999875
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=92.81 Aligned_cols=51 Identities=24% Similarity=0.568 Sum_probs=42.0
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHh-cCCCCcccccccCCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-~knsCPICR~~l~~~~ 389 (392)
.++..|+||++.+.++. .++|+|.||..||.+|+. .+..||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK----QTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCC----CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCee----ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 45678999999998652 238999999999999995 5678999999987653
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=9.6e-12 Score=107.45 Aligned_cols=48 Identities=35% Similarity=0.888 Sum_probs=41.5
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
++..|+||++.|.++ ..+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTL-NCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 456899999999764 344 899999999999999999999999998854
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=2.2e-11 Score=91.81 Aligned_cols=53 Identities=21% Similarity=0.528 Sum_probs=43.4
Q ss_pred CCccceecc-cccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 016255 337 EGNCVICLE-EYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 389 (392)
Q Consensus 337 d~~C~ICLE-df~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~~ 389 (392)
+..|+||++ .+.++....++++|||.||..||.+|+.. ...||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 568999999 78877654455589999999999999765 467999999987654
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=3.7e-11 Score=93.52 Aligned_cols=52 Identities=31% Similarity=0.645 Sum_probs=43.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc------CCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~------knsCPICR~~l~~~~ 389 (392)
..++..|+||++.+..+ ..+ +|+|.||..||.+|+.. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999999865 234 89999999999999987 667999999987553
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.11 E-value=3.9e-11 Score=93.16 Aligned_cols=52 Identities=29% Similarity=0.553 Sum_probs=43.2
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~~ 389 (392)
..++..|+||++.+.++ ..+ +|||.||..||.+|+.. +..||+||+.+...+
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 34578899999999864 334 89999999999999987 778999999886543
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.9e-11 Score=92.85 Aligned_cols=52 Identities=31% Similarity=0.724 Sum_probs=43.2
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc------CCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~------knsCPICR~~l~~~~ 389 (392)
..++..|+||++.+.++ ..+ +|+|.||..||.+|+.. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCCc---eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567899999999864 234 89999999999999987 778999999987554
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.10 E-value=2.3e-11 Score=101.88 Aligned_cols=54 Identities=24% Similarity=0.676 Sum_probs=44.4
Q ss_pred CCCccceecccccCC---CceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 336 EEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 336 ed~~C~ICLEdf~~g---e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
++..|+||++.|.++ ....++++|||.||..||.+||+.+..||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 467899999999764 233344489999999999999999999999999886543
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=2.2e-11 Score=99.86 Aligned_cols=52 Identities=27% Similarity=0.716 Sum_probs=43.0
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC-CCCcccccccCCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k-nsCPICR~~l~~~~ 389 (392)
.++..|+||++.|.. ...+++|||.||..||.+|+..+ ..||+||+.+..++
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 356789999999985 33425899999999999999987 68999999986543
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.08 E-value=1.8e-11 Score=94.75 Aligned_cols=52 Identities=37% Similarity=0.650 Sum_probs=42.7
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-------CCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-------knsCPICR~~l~~~~ 389 (392)
..++..|+||++.|.++ ..+ +|+|.||..||.+|+.. ...||+||+.+..++
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccCCe---eEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34567899999999864 234 89999999999999987 567999999986543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-10 Score=86.96 Aligned_cols=44 Identities=36% Similarity=0.781 Sum_probs=36.7
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHh---cCCCCccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPIC 381 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~knsCPIC 381 (392)
..++..|+||++.+.++ ..+ +|+|.||..||.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999999864 344 8999999999999998 45689998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=5.8e-11 Score=96.49 Aligned_cols=50 Identities=34% Similarity=0.743 Sum_probs=42.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
++..|+||++.|.++ ..+++|||.||..||.+|+..+..||+||+.+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 457899999999863 33448999999999999999999999999988643
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=92.71 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=40.6
Q ss_pred cCCCCccceecccccCCCceEEccc-CCccccHHHHHHHHhcC--CCCcccccccC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKS-CGHDYHVTCIKKWLSMK--NVCPICKASVM 386 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~Llp-CgH~FH~~CI~kWLk~k--nsCPICR~~l~ 386 (392)
..++..|+||++.|.++ ..+ + |||.||..||.+|+... ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44678899999999865 234 7 99999999999999754 58999999873
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=7.7e-11 Score=97.33 Aligned_cols=52 Identities=29% Similarity=0.668 Sum_probs=43.7
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
..++..|+||++.+.++ ..+++|||.||..||.+|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34578899999999863 33348999999999999999999999999988653
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=84.14 Aligned_cols=44 Identities=36% Similarity=0.982 Sum_probs=36.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHh---cCCCCccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPIC 381 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~knsCPIC 381 (392)
..++..|+||++.+.++ ++++|+|.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999875 2348999999999999954 46789998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=98.28 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=41.0
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC-CCcccccccCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMA 387 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn-sCPICR~~l~~ 387 (392)
.++..|+||++.|..+ ..+ +|||.||..||.+|+..+. .||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3457899999999864 334 8999999999999998654 89999999865
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.7e-10 Score=94.83 Aligned_cols=50 Identities=34% Similarity=0.663 Sum_probs=41.2
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC---CCcccccccCCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASVMADS 389 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn---sCPICR~~l~~~~ 389 (392)
+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||+.+...+
T Consensus 20 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 356899999999865 2238999999999999998754 7999999887554
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=8.5e-11 Score=98.38 Aligned_cols=55 Identities=24% Similarity=0.665 Sum_probs=44.8
Q ss_pred CCCCccceecccccCC---CceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 335 QEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~g---e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
.+...|+||++.+... ....++++|+|.||..||.+||+.+++||+||+.+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999999763 223334489999999999999999999999999987543
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-10 Score=89.70 Aligned_cols=51 Identities=22% Similarity=0.537 Sum_probs=42.0
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC--CCCcccccccCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k--nsCPICR~~l~~~ 388 (392)
.....|.||.+.+..++.. ..|+|.||..||.+||+.+ .+||+||++...+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 3457899999999865433 2799999999999999987 7899999987543
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.95 E-value=3.1e-10 Score=100.36 Aligned_cols=49 Identities=35% Similarity=0.716 Sum_probs=41.0
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~ 387 (392)
++..|+||++.|.++ + .+++|||.||..||.+|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--M-TTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--C-EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999863 3 34489999999999999997 7789999998853
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=3.4e-10 Score=99.79 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=41.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC-CCcccccccCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn-sCPICR~~l~~~ 388 (392)
+...|+||++.|.++ ..+ +|+|.||..||.+|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999864 234 8999999999999998765 799999998765
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.91 E-value=3.3e-10 Score=95.23 Aligned_cols=51 Identities=24% Similarity=0.597 Sum_probs=42.4
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC-CCcccccccCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMAD 388 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn-sCPICR~~l~~~ 388 (392)
..++..|+||++.+..+ ..+ +|||.||..||.+|+..+. .||+||+.+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34567899999999864 334 8999999999999998765 899999988653
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=1.7e-10 Score=96.11 Aligned_cols=48 Identities=29% Similarity=0.608 Sum_probs=40.3
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~ 386 (392)
.++..|+||++.+..+ ..+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3467899999999864 344 89999999999999976 668999999874
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.86 E-value=6.6e-10 Score=92.69 Aligned_cols=50 Identities=24% Similarity=0.536 Sum_probs=41.7
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 389 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~~ 389 (392)
++..|+||++.+.++ ..+ +|||.||..||.+|+.. ...||+||+.+...+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 457899999999864 334 89999999999999987 678999999986543
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.85 E-value=1.5e-09 Score=86.19 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=42.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccCCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~~ 389 (392)
..++..|+||++.+...+.....++|||.||..||.+|+.. ...||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34567899999998654433221259999999999999854 567999999886543
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=1.4e-09 Score=87.12 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=42.8
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
.+...|+||++.+.++ ++++|||.|+..||.+|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 3567899999999975 3348999999999999999888999999987643
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=2e-09 Score=89.07 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=43.5
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
.+...|+||++.+.++ ++++|||.|+..||.+||..+.+||+||..+..++
T Consensus 27 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 3567899999999975 33489999999999999998889999999986543
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.81 E-value=2.3e-09 Score=88.38 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=43.6
Q ss_pred CCCCccceecccccCCCceEEcccCC-ccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCG-HDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCg-H~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
.++..|+||++.+.++ ++++|| |.|+..||.+||..+.+||+||+.+...+
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 3567899999999976 334899 99999999999998889999999886543
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.81 E-value=1.6e-09 Score=82.46 Aligned_cols=50 Identities=30% Similarity=0.508 Sum_probs=40.7
Q ss_pred CCCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.++..|.||++...+. +...+||||. |+..|+.+|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3467899999987753 3222389999 899999999998899999999874
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=95.18 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=41.0
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC-CCcccccccC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVM 386 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn-sCPICR~~l~ 386 (392)
..++..|+||++.+.++ ..+ +|||.||..||.+|+.... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQA-QCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567899999999875 234 8999999999999998765 7999999764
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.6e-09 Score=90.82 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=40.5
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
+...|+||++.|.++ ..+.+|||.||..||.+|+. ..||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 467899999999865 22328999999999999997 78999999986443
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=2.2e-09 Score=79.29 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=39.1
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
.+...|+||++.|.++ ++++|+|.||..||.+| ...||+||+.+..+.
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4567899999999865 33489999999999884 668999999986543
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=3.7e-09 Score=106.76 Aligned_cols=47 Identities=30% Similarity=0.720 Sum_probs=39.9
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHh-cCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-~knsCPICR~~l~~ 387 (392)
...|+||++.+.+ +..+ +|||.||..||.+|+. .+..||+||+.+..
T Consensus 332 ~~~C~ICle~~~~---pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999999865 3344 8999999999999998 67889999998754
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.71 E-value=4.9e-09 Score=79.48 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=40.2
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.+..|.||++...+. +...+||||. ||..|+.+|.+....||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 457899999987653 3333489998 999999999988889999999874
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=6.5e-09 Score=96.98 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=41.3
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC-CCCcccccccCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k-nsCPICR~~l~~~ 388 (392)
.....|+||++.+.++ ++++|||.||..||.+|+... .+||+||..+...
T Consensus 206 ~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3567899999999975 334899999999999999874 4599999988543
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=4.4e-09 Score=81.85 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=36.3
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
++..|+||++.+.+ +..+ ||||. ||..|+.+| ..||+||+.+.
T Consensus 23 ~~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFV-PCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEE-TTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC---EEEc-CCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 45789999999875 3344 89999 999999999 78999999875
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=90.33 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=42.3
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC-CCCcccccccCCC
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD 388 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k-nsCPICR~~l~~~ 388 (392)
..++..|+||++.+.++ ..+ +|||.||..||.+|+..+ ..||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44567899999999865 334 899999999999999875 4899999988653
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=82.33 Aligned_cols=47 Identities=30% Similarity=0.553 Sum_probs=37.9
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC------CCCcc--cccc
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK------NVCPI--CKAS 384 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k------nsCPI--CR~~ 384 (392)
..+..|+||++.|.++ +++..|||.|+..||.+||..+ ..||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567899999999975 2342499999999999999764 47999 9866
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.57 E-value=1.1e-08 Score=102.00 Aligned_cols=53 Identities=28% Similarity=0.651 Sum_probs=41.0
Q ss_pred CCCCccceecccccCCCce----EEcccCCccccHHHHHHHHhcC-----------CCCcccccccCC
Q 016255 335 QEEGNCVICLEEYKNMDDV----GTLKSCGHDYHVTCIKKWLSMK-----------NVCPICKASVMA 387 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v----~~LlpCgH~FH~~CI~kWLk~k-----------nsCPICR~~l~~ 387 (392)
....+|+||++.+....++ ...++|+|.||..||.+||+.. ..||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3567899999999873322 2334799999999999999752 459999998753
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.4e-08 Score=75.20 Aligned_cols=43 Identities=26% Similarity=0.670 Sum_probs=35.1
Q ss_pred CCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
+..|+||++.+.+. +++||+|. ||..|+.+ ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45799999998753 34489999 99999965 3789999998854
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.42 E-value=1.2e-07 Score=71.75 Aligned_cols=47 Identities=30% Similarity=0.759 Sum_probs=36.3
Q ss_pred CCCccceecccccCCCceEEcccCC--c---cccHHHHHHHHhc--CCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCG--H---DYHVTCIKKWLSM--KNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCg--H---~FH~~CI~kWLk~--knsCPICR~~l~ 386 (392)
+...|.||+++.. +.+ ++ ||. + .||..||.+||.. +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999999843 333 34 765 4 8999999999975 567999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.42 E-value=8e-08 Score=87.72 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=41.3
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC-CCCcccccccCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k-nsCPICR~~l~~~ 388 (392)
.+...|+||++.+.++ ++++|||.|+..||.+||... .+||+|+..+...
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999975 334899999999999999874 4699999987543
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=2e-07 Score=71.78 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=35.7
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
++..|.||++...+ + +++||+|. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---~-v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---W-VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---C-EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---E-EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 46789999998764 3 44599999 99999984 4789999998753
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=1.2e-07 Score=76.51 Aligned_cols=48 Identities=25% Similarity=0.646 Sum_probs=38.5
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC--------CCCcc--cccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--------NVCPI--CKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k--------nsCPI--CR~~ 384 (392)
+...|+||++++..++.+ .+.+|+|.||..||.+++..+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999999876444 444799999999999999641 35999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=8.8e-08 Score=75.81 Aligned_cols=43 Identities=33% Similarity=0.763 Sum_probs=35.0
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
++..|+||++.+.+ +. ++||||. ||..|+.+| ..||+||+.+.
T Consensus 17 ~~~~C~IC~~~~~~---~v-~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---ST-FCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EE-EETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EE-EECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 35689999998764 33 3489999 999999887 38999999774
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=2.1e-07 Score=70.51 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=41.1
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCCCC
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..|+||++.+.++ + ++.+|||.|...||.+||+.+.+||++++.+..++
T Consensus 4 ~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 5799999999965 3 23279999999999999998888999999886543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.6e-07 Score=87.33 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=40.9
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC--CCCcc--cccccCCC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPI--CKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k--nsCPI--CR~~l~~~ 388 (392)
.....|+||++.|.++ |. .+.|||.||..||.+|+..+ ..||+ |++.+...
T Consensus 179 ~~el~CPIcl~~f~DP--Vt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCC--ee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3567899999999875 33 33799999999999999864 46999 99977543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.19 E-value=2.3e-07 Score=92.28 Aligned_cols=43 Identities=30% Similarity=0.754 Sum_probs=36.5
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
++..|+||++.+.+ +..+ ||||. ||..|+..| ..||+||+.+.
T Consensus 294 ~~~~C~IC~~~~~~---~v~l-pCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFI-PCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEE-TTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEc-CCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 56789999999875 3344 89999 999999988 68999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.82 E-value=1.1e-05 Score=67.44 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=36.2
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCcccccccC
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 386 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~ 386 (392)
.|.+|--.+.. -+++.||+|+||.+|+..|.+. .+.||+|+..+.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 48888777664 3455599999999999999865 578999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.37 E-value=7.4e-05 Score=70.67 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=39.2
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC--CCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN--VCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn--sCPICR~~l~~ 387 (392)
....|.||.+.+..+. .+..|++.||..|+.+|++.+. .||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3568999999988652 2335999999999999998754 79999987643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.50 E-value=0.0036 Score=51.74 Aligned_cols=47 Identities=32% Similarity=0.634 Sum_probs=38.2
Q ss_pred CCCccceecccccCCCceEEcccC-CccccHHHHHHHHhcCCCCcccccccCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSC-GHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpC-gH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
.-..|-.|....+. ++ .| .|.+|..||...|.....||||+.+|+..
T Consensus 27 G~~nCKsCWf~~k~---LV---~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG---LV---ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS---EE---ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC---ee---eecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 34579999877663 22 45 59999999999999999999999998764
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.89 E-value=0.069 Score=42.77 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=26.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHH-HH
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WL 372 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~k-WL 372 (392)
++..|.||++.+... .+...+.|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHHHhc
Confidence 357899999875433 2333348999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.45 E-value=0.074 Score=40.73 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=34.9
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC----CCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn----sCPICR~~l~ 386 (392)
.....|.||.+. + ++...-.|...||..|+...|.... .||.|+....
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999753 3 4444557999999999998886532 4999987653
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.11 E-value=0.088 Score=39.34 Aligned_cols=50 Identities=24% Similarity=0.437 Sum_probs=35.5
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHh-----cCCCCcccccc
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKAS 384 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-----~knsCPICR~~ 384 (392)
.+...|+||...+.+....+..-.|.-.||..|+.--.. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345679999999875555555557999999999854322 23459999754
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.67 E-value=0.36 Score=36.01 Aligned_cols=47 Identities=19% Similarity=0.584 Sum_probs=33.2
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCcccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKAS 384 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~ 384 (392)
...+..|.||.+. + .+...-.|.-.||..|+..-|... =.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999873 3 444455788999999998755432 239999765
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.02 E-value=0.83 Score=37.09 Aligned_cols=36 Identities=14% Similarity=0.430 Sum_probs=25.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHH
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 371 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kW 371 (392)
...|..|.||- .+...+....- -|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 44678999985 34444333222 48999999999996
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.01 E-value=0.2 Score=38.46 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc----CCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM----KNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~----knsCPICR~~l~~ 387 (392)
+...|.||..... ++.++..-.|.-.||..|+..-+.. .-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 4456999988764 4344444479999999999755432 2349999887653
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.97 E-value=0.75 Score=35.82 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHh-----cCCCCcccccccC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-----~knsCPICR~~l~ 386 (392)
...| ||...+......+..-.|.-.||..|+.--.. ..-.||.|+....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3445 99998864444444557999999999842211 2345999987653
No 81
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.05 E-value=0.25 Score=40.91 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCccceecccccCCCceEEcc-cCCccccHHHHHHHH----h------cCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWL----S------MKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~Ll-pCgH~FH~~CI~kWL----k------~knsCPICR~~l~~ 387 (392)
...|.||...+.........- .|.-.||..|+.-=. . .+-.||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 457999999987655555553 588999999973211 0 23459999876543
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.83 E-value=0.36 Score=36.07 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=32.4
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~l~ 386 (392)
..+..|.||.+. + .+...-.|.-.||..|+..-|... =.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 446779999853 3 333344688999999998655432 23999987543
No 83
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=80.35 E-value=1.3 Score=31.78 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=31.2
Q ss_pred ccceecccccCCCceEEcc-cCCccccHHHHHHH----HhcCCCCcccc
Q 016255 339 NCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKW----LSMKNVCPICK 382 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~Ll-pCgH~FH~~CI~kW----Lk~knsCPICR 382 (392)
.|.||...+.+++..+..- .|.-.||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889999987666565655 58889999997421 12456799985
No 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.28 E-value=1.3 Score=44.40 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHh---cC--CCCcccccccCCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MK--NVCPICKASVMAD 388 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~k--nsCPICR~~l~~~ 388 (392)
...|+|-+..+..+ ++.. .|.|.-|.+- ..||. .. -.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~P--vRg~-~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSI-NCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSE--EEET-TCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCcccccccc--CcCC-cCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHH
Confidence 35799888777754 4444 7999855442 34443 22 3499999887544
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.05 E-value=0.36 Score=35.27 Aligned_cols=46 Identities=24% Similarity=0.597 Sum_probs=31.7
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKA 383 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~ 383 (392)
...+..|.||.+. + .+...-.|.-.||..|+..=|... =.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999874 3 344444799999999998655432 13999864
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.80 E-value=0.27 Score=36.42 Aligned_cols=48 Identities=23% Similarity=0.618 Sum_probs=33.2
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~l~~ 387 (392)
.+..|.||... + .+...-.|.-.||..|+..=|... =.||.|+.....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 46789999874 3 344444799999999998655432 239999776543
No 87
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.76 E-value=0.83 Score=36.61 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=35.2
Q ss_pred CCCCccceecccc-cCCCceEEcccCCccccHHHHHHHHhcC--CCCcccccccCC
Q 016255 335 QEEGNCVICLEEY-KNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMA 387 (392)
Q Consensus 335 ~ed~~C~ICLEdf-~~ge~v~~LlpCgH~FH~~CI~kWLk~k--nsCPICR~~l~~ 387 (392)
.++..|.||.+.- ...+.+...-.|.-.||..|+..-+.-. =.||.|+.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3567899998763 2333555555788899999997533221 239999776543
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.76 E-value=1.1 Score=31.81 Aligned_cols=44 Identities=20% Similarity=0.588 Sum_probs=29.5
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccccc
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKA 383 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~ 383 (392)
.|.||...-..+ .+...-.|.-.||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898764333 344444799999999997544332 13999975
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.21 E-value=2.9 Score=34.52 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=25.1
Q ss_pred CCCccceecccc-----cCCCceEEcccCCccccHHHHH
Q 016255 336 EEGNCVICLEEY-----KNMDDVGTLKSCGHDYHVTCIK 369 (392)
Q Consensus 336 ed~~C~ICLEdf-----~~ge~v~~LlpCgH~FH~~CI~ 369 (392)
....|.||+..- ..++++.....|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998763 2234566666899999999995
No 90
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=74.83 E-value=2 Score=42.95 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHH---hcC--CCCcccccccCCCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL---SMK--NVCPICKASVMADS 389 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL---k~k--nsCPICR~~l~~~~ 389 (392)
...|+|-...+..+ ++.. .|.|.=|.+ +..|| ..+ -.||+|.+.+..++
T Consensus 215 SL~CPlS~~ri~~P--~Rg~-~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAV-TCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp ESBCTTTCSBCSSE--EEET-TCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeeCCCccceeccC--CcCC-CCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 35699888777754 4444 799984433 33444 333 34999999876543
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=74.64 E-value=0.9 Score=35.11 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=33.8
Q ss_pred CCCCccceecccc-cCCCceEEcccCCccccHHHHHHHHhcC--CCCcccccc
Q 016255 335 QEEGNCVICLEEY-KNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKAS 384 (392)
Q Consensus 335 ~ed~~C~ICLEdf-~~ge~v~~LlpCgH~FH~~CI~kWLk~k--nsCPICR~~ 384 (392)
..+..|.||.+.- .+.+.+...-.|.-.||..|+..-+.-. =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998764 3344555555799999999997533222 139999754
No 92
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.50 E-value=0.56 Score=35.89 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHH----hcCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL----SMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL----k~knsCPICR~~l~~ 387 (392)
...| ||......++..+..-.|.-.||..|+.--. ..+-.||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 4458 7988876665444555799999999985422 123459999876544
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=73.26 E-value=0.69 Score=34.91 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=32.4
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccccccc
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASV 385 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~l 385 (392)
..+..|.||.+. + .+...-.|.-.||..|+..=|... =.||.|+..-
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 356789999864 3 344444788999999998655432 1399997643
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.94 E-value=0.66 Score=34.61 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=34.8
Q ss_pred CCCCccceecccccC-CCceEEcccCCccccHHHHHHHHhc-------CCCCccccccc
Q 016255 335 QEEGNCVICLEEYKN-MDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASV 385 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~-ge~v~~LlpCgH~FH~~CI~kWLk~-------knsCPICR~~l 385 (392)
..+..|.||...... .+.+...-.|.-.||..|+..=|.. .=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987533 3355555579999999998764321 22399997654
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.88 E-value=2.3 Score=32.22 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=26.0
Q ss_pred CCCCccceecccccCCCceEEcc-cCCccccHHHH
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCI 368 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~Ll-pCgH~FH~~CI 368 (392)
.....|.+|...+...+..+..- .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34568999999998766666665 69999999997
No 96
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.17 E-value=0.83 Score=37.14 Aligned_cols=44 Identities=23% Similarity=0.600 Sum_probs=27.5
Q ss_pred CCccceecccccCCCceEEccc--CC-ccccHHHHHHHHhc----CCCCccccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSM----KNVCPICKASV 385 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~----knsCPICR~~l 385 (392)
..-| ||..... ++.| ..-. |. ..||..|+. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3446 9988653 3322 2224 65 679999997 433 22499998754
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.44 E-value=1.3 Score=36.07 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhc---CCCCcccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKAS 384 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~---knsCPICR~~ 384 (392)
...| ||-.....+..| ..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3457 898776655444 44479999999998643221 2249999753
No 98
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.55 E-value=2 Score=34.72 Aligned_cols=47 Identities=19% Similarity=0.447 Sum_probs=32.8
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC----CCccccccc
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASV 385 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn----sCPICR~~l 385 (392)
..+..|.||.+. + .+...-.|.-.||..|+.+=|..-. .||.|+...
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 456789999864 3 3444447889999999977664321 399998643
No 99
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=70.35 E-value=0.91 Score=39.83 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=32.6
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHH-----hcCCCCcccccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL-----SMKNVCPICKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL-----k~knsCPICR~~ 384 (392)
+...| ||...+..+......-.|.-.||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998876555455555799999999985221 123459999763
No 100
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=69.12 E-value=2.4 Score=47.40 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=40.1
Q ss_pred CCCccceecccccCCCceEEcccCC-ccccHHHHHHHHhcCCCCcccccccCCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCG-HDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCg-H~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
+...|+|-++.+.++ +++|.| +.|=..+|.+||..+.+||+=|.++...
T Consensus 890 ~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 455699999998875 334787 5899999999999999999999887543
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=67.89 E-value=2.6 Score=32.41 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=28.1
Q ss_pred CCCccceecccccCCCceEEccc--CC-ccccHHHHHHHHhcC----CCCccccccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSMK----NVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~k----nsCPICR~~l 385 (392)
+...| ||..... ++ ++..-. |. ..||..|+. |... -.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34456 8988643 43 333334 66 689999997 4432 2499997654
No 102
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.88 E-value=0.66 Score=37.45 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=33.5
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCcccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKAS 384 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~ 384 (392)
..++..|.||...-.. +.+...-.|.-.||..|+..=|... =.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456689999877543 2444444799999999997544321 139999764
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.73 E-value=1.5 Score=36.17 Aligned_cols=45 Identities=29% Similarity=0.668 Sum_probs=30.6
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccccc
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKA 383 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~ 383 (392)
.|.||.+.-.+.+.+...-.|...||..|+..-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888886533333454555799999999997655432 24999975
No 104
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.31 E-value=2.2 Score=35.41 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=24.7
Q ss_pred Cccceeccccc------CCCceEEcccCCccccHHHHHHH
Q 016255 338 GNCVICLEEYK------NMDDVGTLKSCGHDYHVTCIKKW 371 (392)
Q Consensus 338 ~~C~ICLEdf~------~ge~v~~LlpCgH~FH~~CI~kW 371 (392)
..|.||+..-. +++++.....|+..||..||...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987642 23455566689999999998754
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.78 E-value=1.3 Score=35.40 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=36.2
Q ss_pred CCCccceecccccC-CCceEEcccCCccccHHHHHHHHhc--------CCCCcccccccCCC
Q 016255 336 EEGNCVICLEEYKN-MDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~-ge~v~~LlpCgH~FH~~CI~kWLk~--------knsCPICR~~l~~~ 388 (392)
.+..|.||...-.. .+.+...-.|...||..|+..=|.. .=.|+.|+......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 35689999976432 2355555579999999999865531 12399998765443
No 106
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.02 E-value=2.1 Score=35.00 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=27.2
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHh
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 373 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk 373 (392)
..+..|.||.+.=+.. .+.....|...||..||...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 3567899998763322 2334457999999999987764
No 107
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.10 E-value=2.8 Score=32.53 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCccceecccccCCCceEEcc--cCCccccHHHHHHHHh---------cCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLS---------MKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~Ll--pCgH~FH~~CI~kWLk---------~knsCPICR~~l~~ 387 (392)
....| ||-.....+ ..+..- .|...||..|+.---. .+-.||.|+..-.+
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 34557 898875444 333443 5999999999853211 23459999875443
No 108
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=60.72 E-value=1.7 Score=33.15 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=30.7
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHh---cCCCCccccc
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKA 383 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~knsCPICR~ 383 (392)
.+...| ||...+. ++..+..-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344567 9988766 333444447999999999853221 2345999965
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.39 E-value=3.4 Score=31.63 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=31.3
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHH------H---hcCCCCcccccccC
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW------L---SMKNVCPICKASVM 386 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kW------L---k~knsCPICR~~l~ 386 (392)
..| ||...+.....| ..-.|.-.||..|+.-- | ..+-.||.|+..-.
T Consensus 17 ~~C-~C~~~~~~~~MI-~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMI-CCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCS-TTCCCCCSSCEE-ECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CEE-ECCCccCCCCEE-EeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 445 899887644334 44479999999998421 1 23567999987543
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=56.42 E-value=6 Score=31.91 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=28.0
Q ss_pred CCCccceecccccCCCceEEcc-cCCccccHHHHHHHHhc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWLSM 374 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~Ll-pCgH~FH~~CI~kWLk~ 374 (392)
....|.+|.+.+++..-| ..+ -=.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 457899999999876433 221 12599999999999875
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.65 E-value=13 Score=32.02 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=32.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHH------hc-----CCCCcccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL------SM-----KNVCPICKAS 384 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL------k~-----knsCPICR~~ 384 (392)
...+..|.||.+. .++...-.|-..||..||.+-| +. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4456679999854 3444445789999999999753 21 1249999653
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.41 E-value=12 Score=32.58 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=33.2
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHh---------c--CCCCcccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---------M--KNVCPICKAS 384 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---------~--knsCPICR~~ 384 (392)
...+..|.||.+. + ++...-.|--.||..||..-|. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3456789999864 3 4445557999999999997663 1 1239999753
No 113
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=54.84 E-value=8.4 Score=32.01 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=29.7
Q ss_pred cCCCCccceecccccCCCceEEcc--cCCccccHHHHHHHHhcCC----CCccccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSMKN----VCPICKASV 385 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~Ll--pCgH~FH~~CI~kWLk~kn----sCPICR~~l 385 (392)
...+..|.||.+. + ++...- .|--.||..|+. |.... .||.|+..+
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 4566789999832 3 444442 388899999997 54321 388776544
No 114
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=52.45 E-value=1.3 Score=33.51 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=26.7
Q ss_pred CccceecccccCCCceEEcc--cCCccccHHHHHHHH---h-----cCCCCccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWL---S-----MKNVCPICKA 383 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~Ll--pCgH~FH~~CI~kWL---k-----~knsCPICR~ 383 (392)
..| ||-.....+..| ..- .|.-.||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 897665555433 331 388899999973210 0 1245999975
No 115
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=52.27 E-value=3.7 Score=31.49 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHh-----cCCCCccccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASV 385 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-----~knsCPICR~~l 385 (392)
.....||...+..+...+..-.|.-.||..|+.---. ..-.||.|+...
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3445699887764444445557999999999953221 234599998754
No 116
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.44 E-value=2.4 Score=31.47 Aligned_cols=41 Identities=24% Similarity=0.612 Sum_probs=26.1
Q ss_pred CccceecccccCCCceEEccc--CC-ccccHHHHHHHHhcC----CCCccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSMK----NVCPICKA 383 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~k----nsCPICR~ 383 (392)
.-| ||.+... + .++..-. |. ..||..|+. |... -.||.|++
T Consensus 10 ~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 445 9988643 4 3333335 66 689999997 4332 24999965
No 117
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.79 E-value=3.9 Score=40.26 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-------CCCCccccccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-------knsCPICR~~l 385 (392)
....|.+|...|..-..--.+..||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346799999998754322233369999999999776521 34588886655
No 118
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.56 E-value=2.6 Score=35.86 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
....|.+|...|..-..--..-.||.+||..|..+.......|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34679999999975433233447999999999877665566688885543
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.54 E-value=2.7 Score=32.12 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=28.5
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhc--CC---CCcccccc
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KN---VCPICKAS 384 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--kn---sCPICR~~ 384 (392)
.|.||...-. ++.+...-.|.-.||..|+..=|.. +. .||.|+..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4667765422 2344444478899999999854432 12 49999753
No 120
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=47.26 E-value=4 Score=30.24 Aligned_cols=41 Identities=24% Similarity=0.630 Sum_probs=25.5
Q ss_pred CccceecccccCCCceEEccc--CC-ccccHHHHHHHHhcC----CCCccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSMK----NVCPICKA 383 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~k----nsCPICR~ 383 (392)
.-| ||..... + .++..-. |. ..||..|+. |... -.||.|+.
T Consensus 11 ~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345 8988643 3 3333334 55 679999997 4432 23999965
No 121
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.17 E-value=2.7 Score=32.95 Aligned_cols=44 Identities=25% Similarity=0.566 Sum_probs=27.9
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcC-----CCCccccc
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-----NVCPICKA 383 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k-----nsCPICR~ 383 (392)
.|.||...-.. +.+...-.|.-.||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666554332 3444444788999999998765431 24999976
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.04 E-value=11 Score=32.45 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=25.7
Q ss_pred CCCCccceeccccc-CCCceEEcccCCccccHHHHH
Q 016255 335 QEEGNCVICLEEYK-NMDDVGTLKSCGHDYHVTCIK 369 (392)
Q Consensus 335 ~ed~~C~ICLEdf~-~ge~v~~LlpCgH~FH~~CI~ 369 (392)
..+..|.||+..|. ....-.....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999994 333344555899999999853
No 123
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=43.65 E-value=15 Score=29.21 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=33.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc------CCCCccccccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~------knsCPICR~~l 385 (392)
+...|.+|...|..-..--....||.+||..|...++.. ...|-.|-..|
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 346799999999764433334479999999998765421 23476665443
No 124
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=41.27 E-value=4.3 Score=30.38 Aligned_cols=41 Identities=24% Similarity=0.644 Sum_probs=25.7
Q ss_pred CccceecccccCCCceEEccc--CC-ccccHHHHHHHHhc----CCCCccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSM----KNVCPICKA 383 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~----knsCPICR~ 383 (392)
.-| ||..... ++ ++..-. |. ..||..|+. |.. +-.||.|+.
T Consensus 12 ~yC-~C~~~~~-g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVSY-GE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred cEE-ECCCCCC-CC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 445 9988633 43 333334 55 789999997 332 224999965
No 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.62 E-value=6.6 Score=30.63 Aligned_cols=46 Identities=24% Similarity=0.575 Sum_probs=30.3
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhc--CC---CCccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KN---VCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--kn---sCPICR~ 383 (392)
+..|.||...-.. +.+...-.|...||..|+..=|.. .. .||.|+.
T Consensus 26 ~c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478889865333 344455579999999999854432 22 3999975
No 126
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.89 E-value=21 Score=35.92 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=32.7
Q ss_pred cCCCCccceecccccCCCceEEcc--cCCccccHHHHHHHHhc----------CCCCccccc
Q 016255 334 MQEEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSM----------KNVCPICKA 383 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~Ll--pCgH~FH~~CI~kWLk~----------knsCPICR~ 383 (392)
...+..|.||-+. .++..+- .|...||..||+.++.. +=.|=+|.-
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3456779999864 3455555 79999999999999922 224888864
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.63 E-value=7 Score=36.67 Aligned_cols=47 Identities=21% Similarity=0.497 Sum_probs=27.4
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhc--CC---CCcccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KN---VCPICKAS 384 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--kn---sCPICR~~ 384 (392)
+..|.||...-..+ .+...-.|.-.||..|+..=|.. .. .||.|+..
T Consensus 174 ~c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34688887643333 34444479999999999855533 22 39999754
No 128
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.58 E-value=27 Score=28.50 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=35.5
Q ss_pred CCccceecccccC---CCceEEcccCCccccHHHHHHHHhc-CCCCcccccccC
Q 016255 337 EGNCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~---ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~ 386 (392)
...|-||-+++.. ++.....--|+--.|..|..-=.+. +..||-|++...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4579999999754 3333333357777899998766554 567999998764
No 129
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.37 E-value=16 Score=28.46 Aligned_cols=51 Identities=25% Similarity=0.580 Sum_probs=33.1
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc------CCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~------knsCPICR~~l~ 386 (392)
+...|.+|...|..-..---.-.||.+||..|....+.. ...|-.|-..|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 446799999999754322233469999999998654321 123777755543
No 130
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.00 E-value=20 Score=31.89 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=28.0
Q ss_pred ccCCCCccceecccccCCCceEEcc--cCCccccHHHHHHHHhc
Q 016255 333 QMQEEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSM 374 (392)
Q Consensus 333 ~~~ed~~C~ICLEdf~~ge~v~~Ll--pCgH~FH~~CI~kWLk~ 374 (392)
....+..|.||-+. .++...- .|...||..||+.++..
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 34456789999853 4555554 58899999999999843
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.97 E-value=20 Score=26.03 Aligned_cols=40 Identities=20% Similarity=0.487 Sum_probs=25.6
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
..|..|-+.+...+.+... -+..||..|. .|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 4688888877765444332 4567777774 57777776643
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.83 E-value=16 Score=27.13 Aligned_cols=40 Identities=25% Similarity=0.597 Sum_probs=28.8
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
...|..|-+.+..++.+. .-+..||..|. .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCCC--------CCCCCCCccCC
Confidence 467999998888666543 24677888874 58888887754
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=37.81 E-value=19 Score=27.39 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=25.1
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHH
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 371 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kW 371 (392)
+..|.+|...|..-..---.-.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 45899999998754322233369999999997543
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.92 E-value=14 Score=33.60 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=26.7
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHH
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 372 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL 372 (392)
++..|.+|...|..-..---+-.||.+||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 4578999999997543222334699999999976543
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.87 E-value=17 Score=26.39 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
...|..|-+.+...+.+.. .-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 3568888887776444432 34667887774 57777776643
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.84 E-value=18 Score=30.39 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=26.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHH
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 372 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL 372 (392)
+...|.+|...|..-..---.-.||.+||..|.....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 3467999999997543222334699999999976543
No 137
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.67 E-value=6.3 Score=32.94 Aligned_cols=24 Identities=25% Similarity=0.744 Sum_probs=15.8
Q ss_pred cCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 358 SCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 358 pCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.||+.|. +=+.....||.|+.+-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 7999991 11233467999998643
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.15 E-value=23 Score=28.11 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=32.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHh-------cCCCCccccccc
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-------MKNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-------~knsCPICR~~l 385 (392)
+...|.+|...|..-..---.-.||.+||..|....+. ....|-.|-..+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 44679999999986433223346999999999765432 123477775543
No 139
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=36.11 E-value=21 Score=27.87 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=34.4
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHh--------cCCCCcccccccC
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS--------MKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk--------~knsCPICR~~l~ 386 (392)
.+...|.+|...|..-..---.-.||.+||..|....+. ....|-.|-..+.
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 345689999999986433223346999999999866532 1235777765543
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.90 E-value=15 Score=33.72 Aligned_cols=51 Identities=20% Similarity=0.513 Sum_probs=34.5
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc--------CCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--------knsCPICR~~l~ 386 (392)
++..|.+|...|..-..---+-.||.+||..|....+.. ...|-.|-..+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 456899999999764333334479999999998765421 234777765553
No 141
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=34.46 E-value=7.3 Score=40.21 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHh-----cCCCCccccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASV 385 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-----~knsCPICR~~l 385 (392)
+...+||...+..+...+.+-.|.-.||..|+.---. .+-.||.|+...
T Consensus 36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3345599988764444445557999999999843221 124599998643
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.37 E-value=23 Score=27.55 Aligned_cols=37 Identities=19% Similarity=0.499 Sum_probs=25.8
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHH
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 371 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kW 371 (392)
.+...|.+|...|..-..---.-.||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3456799999999754322223369999999997543
No 143
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.34 E-value=24 Score=26.75 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=29.7
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
....|..|-+.+...+.+. .-+..||..|. .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 4567999999987665553 24678898884 58888877654
No 144
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.64 E-value=21 Score=27.54 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=23.4
Q ss_pred CCCCccceecccccCCCceEEcccC-CccccHHHHHHH
Q 016255 335 QEEGNCVICLEEYKNMDDVGTLKSC-GHDYHVTCIKKW 371 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpC-gH~FH~~CI~kW 371 (392)
.+..-|.||.++- .++.+ .| +-+||..|...-
T Consensus 6 ee~pWC~ICneDA----tlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEET-TTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEec-CCCCceehHHHHHHH
Confidence 3445699999882 35555 79 789999998764
No 145
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.44 E-value=27 Score=26.07 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=29.2
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
...|..|-+.+..++.+... -+..||..|. .|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 35799999888876654333 4678888884 68888877754
No 146
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.26 E-value=23 Score=26.88 Aligned_cols=40 Identities=25% Similarity=0.595 Sum_probs=29.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
....|.-|-+.+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45679999999887665543 3677888884 6888887764
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.14 E-value=16 Score=27.02 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=25.8
Q ss_pred CCccceecccccCCCceEEcccCCccccH-HHHHHHHhcCCCCccccccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHV-TCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~-~CI~kWLk~knsCPICR~~l 385 (392)
-..|..|...+..+. ... .=+..||. .|..+-+ ...|-.|...+
T Consensus 27 CF~C~~C~~~L~~~~-~~~--~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG-HAE--HEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TCBCTTTCCBCCTTT-EEE--ETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCccccCccCCCCc-eEC--cCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 356888877776542 211 23566777 5776543 45577776543
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.86 E-value=8.5 Score=31.30 Aligned_cols=46 Identities=17% Similarity=0.509 Sum_probs=30.1
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccccccc
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASV 385 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~l 385 (392)
.|.||...-.. +.+...-.|...||..|+..=|... -.||.|+.-.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57777765333 3454555799999999998655431 2399986643
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.64 E-value=31 Score=25.02 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=17.7
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
..|..|-+.+...+.+.. .-+..||..|. .|-.|+..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV--ALDRVFHVGCF--------VCSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE--CSSSEECTTTC--------BCSSSCCBC
T ss_pred CCCccCCCccCCCceEEE--ECCCeEcccCC--------cccccCCcC
Confidence 345566555544322222 13445555552 355555554
No 150
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=30.33 E-value=11 Score=30.38 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCccceecccccCCCceEEcccCC---ccccHHHHHHHHhc----CCCCcc-cccc
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCG---HDYHVTCIKKWLSM----KNVCPI-CKAS 384 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCg---H~FH~~CI~kWLk~----knsCPI-CR~~ 384 (392)
..-| ||..... ++ ++..-.|. -.||..||. |.. +-.||. |+..
T Consensus 26 ~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp SCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcch
Confidence 3456 9987533 33 33333444 689999996 332 224999 9753
No 151
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.12 E-value=19 Score=29.95 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=10.7
Q ss_pred ccHHHHHHHHhc
Q 016255 363 YHVTCIKKWLSM 374 (392)
Q Consensus 363 FH~~CI~kWLk~ 374 (392)
||..||.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999963
No 152
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.04 E-value=12 Score=28.79 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=7.8
Q ss_pred HHhcCCCCcccccccC
Q 016255 371 WLSMKNVCPICKASVM 386 (392)
Q Consensus 371 WLk~knsCPICR~~l~ 386 (392)
||..--.||+|+.++.
T Consensus 4 ~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 4 KLLDILACPICKGPLK 19 (69)
T ss_dssp CGGGTCCCTTTCCCCE
T ss_pred HHHhheeCCCCCCcCe
Confidence 3444445555555543
No 153
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.91 E-value=19 Score=29.87 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 016255 363 YHVTCIKKWLS 373 (392)
Q Consensus 363 FH~~CI~kWLk 373 (392)
||..||.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 154
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.89 E-value=3.9 Score=33.86 Aligned_cols=46 Identities=17% Similarity=0.510 Sum_probs=30.9
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccccccc
Q 016255 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASV 385 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPICR~~l 385 (392)
.|.||...-..+ .+...-.|...||..|+..=|... =.||.|+..+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 688887754333 444455799999999998544331 1399997654
No 155
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.85 E-value=30 Score=25.36 Aligned_cols=42 Identities=21% Similarity=0.521 Sum_probs=29.1
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
....|.-|-+.+...+.+... -+..||..|. .|-.|++.|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 356799999988765555433 4677888884 57788777643
No 156
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.76 E-value=15 Score=24.65 Aligned_cols=11 Identities=36% Similarity=0.957 Sum_probs=6.5
Q ss_pred CCcccccccCC
Q 016255 377 VCPICKASVMA 387 (392)
Q Consensus 377 sCPICR~~l~~ 387 (392)
.||+|++.+..
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 36777665543
No 157
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=29.73 E-value=25 Score=26.32 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=29.0
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 381 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPIC 381 (392)
..|--|+..|.+. .+.....|++.||.+|=.---..-..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998643 235567899999999932211223459988
No 158
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.47 E-value=12 Score=24.15 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.6
Q ss_pred CCCCcccccccCC
Q 016255 375 KNVCPICKASVMA 387 (392)
Q Consensus 375 knsCPICR~~l~~ 387 (392)
+..||+|+..++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3469999987754
No 159
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=28.89 E-value=11 Score=26.77 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=27.3
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHh---cCCCCccccc
Q 016255 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKA 383 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~knsCPICR~ 383 (392)
-.||......+ ..+..-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 6 ~C~C~~~~~~~-~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TCFCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CSTTCCBCTTC-CEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEEeCCcCCCC-CEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 34787766533 3334446999999999853221 2345999975
No 160
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.76 E-value=34 Score=24.84 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=26.2
Q ss_pred CCccceecccccC--CCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 337 EGNCVICLEEYKN--MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~--ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
...|.-|-+.+.. .+.+.. .-+..||..|. .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCC
Confidence 3568888888775 333332 25677888774 5777877764
No 161
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.43 E-value=24 Score=30.90 Aligned_cols=48 Identities=19% Similarity=0.467 Sum_probs=31.3
Q ss_pred CCCccceecccccCC-CceEEcccCCccccHHHHHHHHhcCC--CCcccccc
Q 016255 336 EEGNCVICLEEYKNM-DDVGTLKSCGHDYHVTCIKKWLSMKN--VCPICKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf~~g-e~v~~LlpCgH~FH~~CI~kWLk~kn--sCPICR~~ 384 (392)
.+..|.+|+..|.-- ..-.....|.|.+|..|- .|+.... .|=+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 567899999987432 123344589999999997 2443222 28777653
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.57 E-value=35 Score=25.20 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=25.9
Q ss_pred CccceecccccC--CCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 338 GNCVICLEEYKN--MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 338 ~~C~ICLEdf~~--ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
..|..|-+.+.. ..++.. .-+..||..|. .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCcccC--------ChhhCCCcCC
Confidence 568888888775 323322 35677888884 5777777664
No 163
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.54 E-value=33 Score=24.56 Aligned_cols=42 Identities=21% Similarity=0.521 Sum_probs=30.2
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
....|.-|-..+...+.+... =+..||..|. .|-.|++.|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 346799999998877655432 4667898885 58888877643
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.22 E-value=22 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=16.5
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHH
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 372 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL 372 (392)
..|..|...+..++..... =+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 3456665555443333222 34556666665554
No 165
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=25.83 E-value=22 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.652 Sum_probs=22.9
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
..|..|-+.+..++.+. .-+..||..|. .|-.|++.|.
T Consensus 8 ~~C~~C~~~I~~~~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ---CDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp CBCSSSCCBCSSTTEEE---ETTEEEESSSE--------ECSSSCCEEC
T ss_pred CcCcCcCccccCceeEE---eCCcccccccC--------ccCCCCCCCC
Confidence 56777777776555432 24566776663 4666666654
No 166
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.41 E-value=11 Score=28.97 Aligned_cols=10 Identities=30% Similarity=0.560 Sum_probs=4.4
Q ss_pred CCCccccccc
Q 016255 376 NVCPICKASV 385 (392)
Q Consensus 376 nsCPICR~~l 385 (392)
-.||+|+.++
T Consensus 11 L~CP~ck~~L 20 (67)
T 2jny_A 11 LACPKDKGPL 20 (67)
T ss_dssp CBCTTTCCBC
T ss_pred hCCCCCCCcC
Confidence 3344444443
No 167
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.10 E-value=48 Score=25.27 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccCC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
....|..|-+.+.. +.+ . .-+..||..|. .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~-~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV-K--ARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE-E--SSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE-E--ECCceECccCC--------EecCCCCCCCC
Confidence 45679999988875 222 2 35678998884 68888887754
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.75 E-value=23 Score=29.28 Aligned_cols=39 Identities=26% Similarity=0.585 Sum_probs=21.6
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
..|++|..++.-.. ++.+|..|-+. ++....||-|.++|
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHH
Confidence 67888887765321 22234444221 23345588887766
No 169
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.93 E-value=59 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.597 Sum_probs=21.1
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
...|.-|-+.+...+.+. .-+..||..|. .|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCC
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCC
Confidence 346777776666544332 24556666663 3555555543
No 170
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.74 E-value=31 Score=26.19 Aligned_cols=43 Identities=33% Similarity=0.608 Sum_probs=25.4
Q ss_pred CccceecccccCCCceEEcccC---CccccHHHHHHHHhc----CCCCccccccc
Q 016255 338 GNCVICLEEYKNMDDVGTLKSC---GHDYHVTCIKKWLSM----KNVCPICKASV 385 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpC---gH~FH~~CI~kWLk~----knsCPICR~~l 385 (392)
.-| ||.... .++.|. .-.| ...||..|+. |.. +-.||.|+...
T Consensus 7 ~yC-~C~~~~-~g~MI~-CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 7 GYC-ICNQVS-YGEMVG-CDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCS-TTSCCC-CSSEEC-CSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred eEE-EcCCCC-CCCEeE-eCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 344 688763 343333 3244 3689999996 322 22499997654
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.69 E-value=42 Score=24.98 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
....|..|-+.+.. +.+ . .-+..||..|. .|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~-~--a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV-K--LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE-E--CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE-E--ECcceeCcCcC--------eeCCCCCCCC
Confidence 45689999988875 222 2 35778898885 5777877653
No 172
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.05 E-value=43 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=28.7
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccC
Q 016255 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
...|.-|-+.+.....+. .-+..||..|. .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 468999999887543333 35778999884 6888988874
Done!