BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016256
         (392 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IJL|A Chain A, Crystal Structure Of Acidic Phospholipase A2 From
           Deinagkistrodon Acutus
 pdb|1IJL|B Chain B, Crystal Structure Of Acidic Phospholipase A2 From
           Deinagkistrodon Acutus
          Length = 123

 Score = 29.3 bits (64), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 84  FIEENNEKQSGGAIKCGRNRCNCFNGTCNESSEDELDSYYGDSNLASSAEACEILKSLVP 143
           + EEN +   GG   C R  C C +    +   D LD+Y  D+      + CE  +S  P
Sbjct: 66  YSEENGDIVCGGDDPCKREICEC-DRVAADCFRDNLDTYNSDTYWRYPRQDCE--ESPEP 122

Query: 144 C 144
           C
Sbjct: 123 C 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,603,688
Number of Sequences: 62578
Number of extensions: 394538
Number of successful extensions: 593
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 3
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)