Query 016256
Match_columns 392
No_of_seqs 165 out of 213
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04720 DUF506: Protein of un 100.0 4.5E-69 9.8E-74 502.9 21.5 207 77-296 1-218 (218)
2 TIGR01615 A_thal_3542 uncharac 100.0 1.6E-60 3.5E-65 416.2 14.0 125 174-298 1-131 (131)
3 PF00797 Acetyltransf_2: N-ace 95.9 0.035 7.5E-07 51.4 8.1 60 168-227 45-109 (240)
4 PRK15047 N-hydroxyarylamine O- 94.8 0.1 2.3E-06 51.3 7.8 59 168-226 65-127 (281)
5 COG2162 NhoA Arylamine N-acety 87.7 1.3 2.8E-05 44.3 6.2 65 167-231 65-134 (275)
6 PF08742 C8: C8 domain; Inter 77.9 2.3 5E-05 33.1 2.9 62 218-284 10-71 (74)
7 smart00460 TGc Transglutaminas 67.4 31 0.00067 25.4 6.7 51 173-223 12-67 (68)
8 PF14475 Mso1_Sec1_bdg: Sec1-b 65.2 7.2 0.00016 29.1 2.8 20 261-280 21-40 (41)
9 PF15645 Tox-PLDMTX: Dermonecr 60.4 32 0.0007 31.1 6.7 72 173-256 10-84 (135)
10 PF01841 Transglut_core: Trans 57.4 22 0.00047 28.5 4.6 50 173-222 57-113 (113)
11 PRK14675 hypothetical protein; 54.5 69 0.0015 28.3 7.6 81 175-281 16-98 (125)
12 PF09551 Spore_II_R: Stage II 54.3 62 0.0013 29.3 7.4 42 173-214 57-106 (130)
13 PF08774 VRR_NUC: VRR-NUC doma 52.8 16 0.00034 29.9 3.1 23 173-195 78-100 (100)
14 PF01927 Mut7-C: Mut7-C RNAse 50.7 6.5 0.00014 35.0 0.6 68 175-262 10-78 (147)
15 PRK08462 biotin carboxylase; V 45.6 44 0.00095 34.1 5.7 108 173-281 15-136 (445)
16 COG3349 Uncharacterized conser 41.2 30 0.00065 37.3 3.9 71 178-262 16-86 (485)
17 TIGR00514 accC acetyl-CoA carb 40.8 44 0.00095 34.3 4.9 107 173-281 13-134 (449)
18 PRK08591 acetyl-CoA carboxylas 34.8 76 0.0017 32.3 5.5 44 236-280 90-133 (451)
19 cd00523 archeal_HJR Holliday j 30.1 2E+02 0.0044 25.5 6.7 47 174-227 9-57 (123)
20 PHA01753 Holliday junction res 29.2 2.2E+02 0.0048 25.6 6.8 48 173-227 10-59 (121)
21 TIGR01205 D_ala_D_alaTIGR D-al 26.5 2.7E+02 0.0059 26.6 7.4 97 175-283 21-126 (315)
22 TIGR02144 LysX_arch Lysine bio 25.2 4.9E+02 0.011 24.3 8.7 89 174-283 12-108 (280)
23 PRK05586 biotin carboxylase; V 24.3 2.8E+02 0.006 28.6 7.5 44 236-280 90-133 (447)
24 PRK08463 acetyl-CoA carboxylas 22.9 1.2E+02 0.0025 31.9 4.5 103 173-282 13-134 (478)
25 PF08372 PRT_C: Plant phosphor 22.5 1.3E+02 0.0029 27.9 4.3 50 112-166 38-88 (156)
26 PHA02119 hypothetical protein 21.3 55 0.0012 27.4 1.4 17 173-189 55-71 (87)
27 PRK08654 pyruvate carboxylase 21.2 1.7E+02 0.0037 31.1 5.4 46 236-282 90-135 (499)
28 TIGR01369 CPSaseII_lrg carbamo 20.5 4.4E+02 0.0095 30.8 8.8 102 174-284 577-691 (1050)
No 1
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=4.5e-69 Score=502.93 Aligned_cols=207 Identities=48% Similarity=0.821 Sum_probs=179.4
Q ss_pred HHHHHHHHHhhccccCCCCccccCCCCcccCCCCCCCCCccccccccCCCcccchHHHHHHHhhhcCCCChhhHh---HH
Q 016256 77 LAKMVQNFIEENNEKQSGGAIKCGRNRCNCFNGTCNESSEDELDSYYGDSNLASSAEACEILKSLVPCASVSERN---LL 153 (392)
Q Consensus 77 Ls~MV~~FlEe~~~~~~~~~~~~~~~rcnc~~g~~~d~sdde~d~~~~~s~~~a~~e~~e~Lk~l~~~~s~~Er~---Ll 153 (392)
|++||++|||+++.... +.|++++++++++++.|++ +. .....+..+.|+.|+.+.+..|++ |+
T Consensus 1 Ls~mV~~FlE~~~~~~~----------~~~~~~~~~~~~~~~~d~~-~~--~~~~~~~~e~l~~Ll~~~~~~e~~~~~l~ 67 (218)
T PF04720_consen 1 LSDMVQGFLEEEESSAP----------SFSFSGNGDDSSDEDSDSD-SG--SSESAEFWEELQELLQCISERESSRRRLL 67 (218)
T ss_pred CHHHHHHHhccCCcccc----------cccccccCCCCcccccccc-Cc--ccchHHHHHHHHHHHhccccccchHHHHH
Confidence 78999999999875431 1235566555555544432 11 122467788888999887776666 89
Q ss_pred HHHHHHHHHhhhc--ccchhhhHHHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEcCe------eEEEecCcc
Q 016256 154 ADTAKIVEKNKIC--KRKDDVCRKIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQGE------RLIVDIDFR 225 (392)
Q Consensus 154 ad~~~ave~~~~c--~~~~~~~rr~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~~~------R~IVD~dFR 225 (392)
+++.++++..+.. ..+++|+||.||++||.+||||+||||+|++++++|+|+||||||++.+. ||||||+||
T Consensus 68 ~~v~~~v~~~~~~~~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~fr 147 (218)
T PF04720_consen 68 ADVRRAVEEAKDEIKRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDFR 147 (218)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecchH
Confidence 9999999988653 34688999999999999999999999999999999999999999999765 999999999
Q ss_pred cceeeccCcHHHHHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHhhccCCccc
Q 016256 226 SEFEIARSTKTYKSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWRKAEYIKAKWLSPHAR 296 (392)
Q Consensus 226 ~qFeIARpT~~Y~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWRk~~yM~aKWl~py~R 296 (392)
+||||||||++|++||++||.||||+.++|++||++||+|||+|||++|||||||||++|||+|||++|+|
T Consensus 148 ~~FeiArpt~~Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R 218 (218)
T PF04720_consen 148 SQFEIARPTPEYAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR 218 (218)
T ss_pred hCeeecCCCHHHHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=1.6e-60 Score=416.23 Aligned_cols=125 Identities=55% Similarity=1.028 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEcC------eeEEEecCcccceeeccCcHHHHHHHHhCCCc
Q 016256 174 RKIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQG------ERLIVDIDFRSEFEIARSTKTYKSILQILPYL 247 (392)
Q Consensus 174 rr~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~~------~R~IVD~dFR~qFeIARpT~~Y~~lL~~LP~v 247 (392)
||.||++||.+||||+||||+|++++++|+|+||||||++.+ +|||||+|||+||||||||++|+++|++||.|
T Consensus 1 ~r~v~~~Lr~~Gy~AaiCkS~W~~s~~~p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~Y~~ll~~LP~v 80 (131)
T TIGR01615 1 RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEEYKRLLESLPEV 80 (131)
T ss_pred ChhHHHHHHHCCCCeeeEEeecCCCCCCCCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHHHHHHHHhCCcc
Confidence 588999999999999999999999999999999999999865 49999999999999999999999999999999
Q ss_pred eeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHHHhhccCCccccC
Q 016256 248 FVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWRKAEYIKAKWLSPHARAA 298 (392)
Q Consensus 248 FVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWRk~~yM~aKWl~py~R~~ 298 (392)
|||+.++|++||++||+|||+|||++|||||||||++|||+|||+||+|++
T Consensus 81 FVG~~~rL~~iV~~mc~Aak~Slk~~gmhlPPWRk~~ym~aKWl~~~~R~~ 131 (131)
T TIGR01615 81 FVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQSKWLGPYKRTS 131 (131)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHhccCCccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 3
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=95.91 E-value=0.035 Score=51.42 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=45.8
Q ss_pred cchhh--hHHHHHHHHHhcCCceEEEeec--CCCCCC-CCCcccceEEEEEcCeeEEEecCcccc
Q 016256 168 RKDDV--CRKIVTDGLLALGYDASICKSR--WDKTPS-YPTGEYEYIDVVIQGERLIVDIDFRSE 227 (392)
Q Consensus 168 ~~~~~--~rr~v~~~LR~~GydAaiCkSr--W~~S~~-~paG~hEYIDVv~~~~R~IVD~dFR~q 227 (392)
+.+.| +...+...|+++||++.+|.++ +..... .+.+.|--|-|.+++.+|+||+.|=..
T Consensus 45 rGG~C~elN~lf~~lL~~lGf~v~~~~arv~~~~~~~~~~~~~H~~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 45 RGGYCFELNGLFYWLLRELGFDVTLVSARVYSPGGPDYWPPRTHLVLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp --B-HHHHHHHHHHHHHHCT-EEEEEEEEEETTTTTCCSSSEEEEEEEEEETTEEEEE-SSSTTC
T ss_pred CCeEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCceEEEEEEECCEEEEEeccCCCc
Confidence 34556 4678899999999999999885 444433 578899999999999999999999876
No 4
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=94.81 E-value=0.1 Score=51.29 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=47.7
Q ss_pred cchhhh--HHHHHHHHHhcCCceEEEeec--CCCCCCCCCcccceEEEEEcCeeEEEecCccc
Q 016256 168 RKDDVC--RKIVTDGLLALGYDASICKSR--WDKTPSYPTGEYEYIDVVIQGERLIVDIDFRS 226 (392)
Q Consensus 168 ~~~~~~--rr~v~~~LR~~GydAaiCkSr--W~~S~~~paG~hEYIDVv~~~~R~IVD~dFR~ 226 (392)
+.+.|+ ...+...|+++||++..+..+ |...+..++..|-.+-|.+++.+|+||+.|-+
T Consensus 65 RGGyCfE~N~Lf~~~L~~LGF~v~~~~arV~~~~~~~~~~~tH~~l~V~i~~~~yLvDVGFG~ 127 (281)
T PRK15047 65 RGGYCFEQNGLFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELEGEKWIADVGFGG 127 (281)
T ss_pred CCEEcHhHHHHHHHHHHHcCCcEEEEEEEEEecCCCCCCCcCcEEEEEEECCeeEEEEecCCC
Confidence 445564 678899999999999877664 54444457779999999999999999999986
No 5
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.70 E-value=1.3 Score=44.29 Aligned_cols=65 Identities=20% Similarity=0.406 Sum_probs=53.8
Q ss_pred ccchhhh--HHHHHHHHHhcCCceEE--EeecCCCCC-CCCCcccceEEEEEcCeeEEEecCcccceeec
Q 016256 167 KRKDDVC--RKIVTDGLLALGYDASI--CKSRWDKTP-SYPTGEYEYIDVVIQGERLIVDIDFRSEFEIA 231 (392)
Q Consensus 167 ~~~~~~~--rr~v~~~LR~~GydAai--CkSrW~~S~-~~paG~hEYIDVv~~~~R~IVD~dFR~qFeIA 231 (392)
++.+.|+ .-.+...|+++||+.-. |.-.|...+ ..|.+.|.-|-|.+.++-||+|..|=.+--.|
T Consensus 65 rRGGyCfElNglf~~vL~~lGF~v~~l~arV~~g~~~~a~~~~tH~~L~v~~~~~~~l~DvGFGg~~l~A 134 (275)
T COG2162 65 RRGGYCFELNGLFGRVLRELGFNVRLLLARVVWGLAPDALPPRTHRLLLVELEGETWLADVGFGGQTLTA 134 (275)
T ss_pred cccceehhhhhHHHHHHHHcCCcceeeEEEEEecCCCCCCCcccceEEEEEecCceeEEecCCCCCCcCC
Confidence 4556663 66778889999999976 778899865 46679999999999999999999999776666
No 6
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=77.89 E-value=2.3 Score=33.07 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=43.7
Q ss_pred EEEecCcccceeeccCcHHHHHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCchh
Q 016256 218 LIVDIDFRSEFEIARSTKTYKSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWRKAE 284 (392)
Q Consensus 218 ~IVD~dFR~qFeIARpT~~Y~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWRk~~ 284 (392)
+|.|+.|+.=+.+.-|++-|...+..+=. +-|.. ..+-..|.+-++.+ +..|+.+++||+..
T Consensus 10 ~l~~~~F~~C~~~v~~~~f~~~C~~d~C~-~~~~~---~~~C~~l~~Ya~~C-~~~g~~~~~WR~~~ 71 (74)
T PF08742_consen 10 ILLDPEFAPCHSVVDPDPFYEACVYDMCA-CPGSQ---QCLCEALSAYAREC-QRAGICVGDWRTPT 71 (74)
T ss_pred HHcCchhhhhcccCccHHHHHHHHHHHcC-CCCCc---chhhHHHHHHHHHH-HHCcCCCCCCCCcC
Confidence 45588899999999999999998866543 22221 33444455555555 77899999999864
No 7
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=67.39 E-value=31 Score=25.41 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCCceEEEee-cCCCCCC----CCCcccceEEEEEcCeeEEEecC
Q 016256 173 CRKIVTDGLLALGYDASICKS-RWDKTPS----YPTGEYEYIDVVIQGERLIVDID 223 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkS-rW~~S~~----~paG~hEYIDVv~~~~R~IVD~d 223 (392)
+-..++..||.+|+.|.++.. .+..... -+...|.++.|-+++.=+.+||.
T Consensus 12 ~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev~~~~~W~~~D~~ 67 (68)
T smart00460 12 FAALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEVYLEGGWVPVDPT 67 (68)
T ss_pred HHHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEEEECCCeEEEeCC
Confidence 346678899999999999977 3332222 24578999999998888889985
No 8
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=65.16 E-value=7.2 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 016256 261 IASEAAKQSLKKKGMHVPPW 280 (392)
Q Consensus 261 lmc~Aak~S~k~~Gm~lPPW 280 (392)
++|.++++-..++|.++|+|
T Consensus 21 ~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 68999999999999999999
No 9
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=60.39 E-value=32 Score=31.14 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCC-ceEEEe-ecCCCCCCCCCcccceEEEEEcCeeEEEecCcccceeeccCcHHHHHHHHhCC-Ccee
Q 016256 173 CRKIVTDGLLALGY-DASICK-SRWDKTPSYPTGEYEYIDVVIQGERLIVDIDFRSEFEIARSTKTYKSILQILP-YLFV 249 (392)
Q Consensus 173 ~rr~v~~~LR~~Gy-dAaiCk-SrW~~S~~~paG~hEYIDVv~~~~R~IVD~dFR~qFeIARpT~~Y~~lL~~LP-~vFV 249 (392)
.-+.|+..||..|| |..+.- .-|+.......-+|-=+.+...|.-|||||--. ||.=--. + ..|+
T Consensus 10 a~~~v~~~lk~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k~~g~eyV~D~Ta~-QF~~~~~-----------~~~p~i 77 (135)
T PF15645_consen 10 AMKEVADFLKDKGYEDIKYRGLLIWENANDDSPTNHFVVVAKKNGKEYVFDPTAH-QFSNKGN-----------DNGPII 77 (135)
T ss_pred HHHHHHHHHHhCCCCcceeeEEEEecCCCccCCcceEEEEEEECCEEEEEeCcHH-HhhccCC-----------CCCceE
Confidence 45889999999999 422221 249777777778887777778899999999642 4431111 2 6888
Q ss_pred eChhhHH
Q 016256 250 GKADRLQ 256 (392)
Q Consensus 250 G~~erL~ 256 (392)
|+.+.=.
T Consensus 78 ~~~~~W~ 84 (135)
T PF15645_consen 78 LPEDAWK 84 (135)
T ss_pred ecHHHHH
Confidence 8887654
No 10
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=57.41 E-value=22 Score=28.47 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCCceEEEeecCCCC------CCCCCcccceEEEEE-cCeeEEEec
Q 016256 173 CRKIVTDGLLALGYDASICKSRWDKT------PSYPTGEYEYIDVVI-QGERLIVDI 222 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkSrW~~S------~~~paG~hEYIDVv~-~~~R~IVD~ 222 (392)
+-..++..||.+|+.|.+........ .......|-+..|.+ .+.=+.+||
T Consensus 57 ~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~~~~W~~~Dp 113 (113)
T PF01841_consen 57 YASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLPGGGWIPLDP 113 (113)
T ss_dssp HHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEETTTEEEEEET
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEEcCCcEEEcCC
Confidence 45677899999999998886644332 123456799999999 567777886
No 11
>PRK14675 hypothetical protein; Provisional
Probab=54.53 E-value=69 Score=28.32 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEc--CeeEEEecCcccceeeccCcHHHHHHHHhCCCceeeCh
Q 016256 175 KIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQ--GERLIVDIDFRSEFEIARSTKTYKSILQILPYLFVGKA 252 (392)
Q Consensus 175 r~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~--~~R~IVD~dFR~qFeIARpT~~Y~~lL~~LP~vFVG~~ 252 (392)
...+..|+..||. |..-.|.. + |-.||++.. +.-++||+-.|..-..+.|-.. |...
T Consensus 16 ~~A~~~L~~~G~~--il~rn~r~----~---~GEIDlIa~d~~~lvFVEVK~R~~~~~g~~~~a------------V~~~ 74 (125)
T PRK14675 16 SIAVTYLKGLRYK--IVERNFRC----R---CGEIDIIARDGKTLVFVEVKTRKNYAYGVPQLA------------VTPF 74 (125)
T ss_pred HHHHHHHHHCCCE--EEEEEEeC----C---CCeEEEEEEeCCEEEEEEEEeccCCCCcChHHc------------CCHH
Confidence 5668899999995 55667743 3 557999873 5789999999876544443221 2111
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016256 253 DRLQKIIAIASEAAKQSLKKKGMHVPPWR 281 (392)
Q Consensus 253 erL~~iV~lmc~Aak~S~k~~Gm~lPPWR 281 (392)
. . +-|+.+|+.-|.++++.-.|+|
T Consensus 75 K-~----~ri~~~A~~yL~~~~~~~~~~R 98 (125)
T PRK14675 75 K-Q----RQISKAALTWLAKKKLLDAEAR 98 (125)
T ss_pred H-H----HHHHHHHHHHHHHCCCCCCCEE
Confidence 1 1 1566777888888886434454
No 12
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=54.27 E-value=62 Score=29.32 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCceEEEee--------cCCCCCCCCCcccceEEEEEc
Q 016256 173 CRKIVTDGLLALGYDASICKS--------RWDKTPSYPTGEYEYIDVVIQ 214 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkS--------rW~~S~~~paG~hEYIDVv~~ 214 (392)
+.+..-+.|++.|||-.+--. |+-+.-.+|+|+|+.+-|+++
T Consensus 57 Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlrI~IG 106 (130)
T PF09551_consen 57 IEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALRITIG 106 (130)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEEEEec
Confidence 667777888999976433322 344455699999999999986
No 13
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=52.85 E-value=16 Score=29.90 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCceEEEeecC
Q 016256 173 CRKIVTDGLLALGYDASICKSRW 195 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkSrW 195 (392)
..+...+.|+..||++.||.+.|
T Consensus 78 ~Q~~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 78 NQKEWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred HHHHHHHHHHHCCCEEEEEEccC
Confidence 35667789999999999999987
No 14
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=50.74 E-value=6.5 Score=34.97 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEcCeeEEEecCcccceeeccCcHHHHHHHHhCC-CceeeChh
Q 016256 175 KIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQGERLIVDIDFRSEFEIARSTKTYKSILQILP-YLFVGKAD 253 (392)
Q Consensus 175 r~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~~~R~IVD~dFR~qFeIARpT~~Y~~lL~~LP-~vFVG~~e 253 (392)
..||..||.+||||..+... .+++-|..-....|+||=-|- .-+. ....-. .+++.+.+
T Consensus 10 ~~Lar~LR~lG~Dt~~~~~~---------~D~~il~~A~~e~RillTrd~----------~l~~-~~~~~~~~~li~~~~ 69 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSRDI---------DDDEILELAREEGRILLTRDR----------DLLK-RRRVSGGVILIRSDD 69 (147)
T ss_pred HHHHHHHHHCCCcEEEeCCC---------ChHHHHHHhhhCCeEEEECCH----------HHHH-HhhccCCEEEEcCCC
Confidence 56899999999999977522 223333333346788874332 2222 222222 46786655
Q ss_pred hHHHHHHHH
Q 016256 254 RLQKIIAIA 262 (392)
Q Consensus 254 rL~~iV~lm 262 (392)
-..|+.+++
T Consensus 70 ~~~QL~ev~ 78 (147)
T PF01927_consen 70 PEEQLREVL 78 (147)
T ss_pred HHHHHHHHH
Confidence 555666554
No 15
>PRK08462 biotin carboxylase; Validated
Probab=45.61 E-value=44 Score=34.11 Aligned_cols=108 Identities=18% Similarity=0.128 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEE--cCeeE-----EEecCcccceeeccCc-------HHHH
Q 016256 173 CRKIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVI--QGERL-----IVDIDFRSEFEIARST-------KTYK 238 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~--~~~R~-----IVD~dFR~qFeIARpT-------~~Y~ 238 (392)
+.-.++..++++||.+..|-|.-+....+-.--++++.+-. ....| |++.--+.++....|+ ....
T Consensus 15 ~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a 94 (445)
T PRK08462 15 IALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFV 94 (445)
T ss_pred HHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHH
Confidence 45678889999999999997766553211111233332200 00111 1222222222222222 3344
Q ss_pred HHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016256 239 SILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWR 281 (392)
Q Consensus 239 ~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWR 281 (392)
.+++.+--.|+|...+...+..= =..+++-|++.|.+.|||.
T Consensus 95 ~~~e~~Gi~~~g~~~~~~~~~~d-K~~~r~~l~~~gIp~pp~~ 136 (445)
T PRK08462 95 EICSHHNIKFIGPSVEVMALMSD-KSKAKEVMKRAGVPVIPGS 136 (445)
T ss_pred HHHHHCCCeEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 56777777788877654333211 1467888999999999985
No 16
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=41.19 E-value=30 Score=37.32 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=55.1
Q ss_pred HHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEcCeeEEEecCcccceeeccCcHHHHHHHHhCCCceeeChhhHHH
Q 016256 178 TDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQGERLIVDIDFRSEFEIARSTKTYKSILQILPYLFVGKADRLQK 257 (392)
Q Consensus 178 ~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~~~R~IVD~dFR~qFeIARpT~~Y~~lL~~LP~vFVG~~erL~~ 257 (392)
+..|.++|||..||.++|.--|++-++.- ++--++|-.|+-=| ..|..+++.|+++..+...+|+.
T Consensus 16 a~~La~~g~~vt~~ea~~~~GGk~~s~~~--------~dg~~~E~glh~f~------~~Y~n~~~ll~~~~~~~~~~~~~ 81 (485)
T COG3349 16 AYELADAGYDVTLYEARDRLGGKVASWRD--------SDGNHVEHGLHVFF------GCYYNLLTLLKELPIEDRLQLRE 81 (485)
T ss_pred HHHHHhCCCceEEEeccCccCceeeeeec--------CCCCeeeeeeEEec------hhHHHHHHHhhhCCchheeehHh
Confidence 66789999999999999987777665433 44556666666655 57999999999998887777777
Q ss_pred HHHHH
Q 016256 258 IIAIA 262 (392)
Q Consensus 258 iV~lm 262 (392)
.+.+.
T Consensus 82 ~~~~~ 86 (485)
T COG3349 82 HTKTF 86 (485)
T ss_pred hhhhh
Confidence 77766
No 17
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=40.76 E-value=44 Score=34.28 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCceEEEeecCCC-CCCCCCcccceEEEEE--cCeeE-----EEecCcccceeeccCc-------HHH
Q 016256 173 CRKIVTDGLLALGYDASICKSRWDK-TPSYPTGEYEYIDVVI--QGERL-----IVDIDFRSEFEIARST-------KTY 237 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkSrW~~-S~~~paG~hEYIDVv~--~~~R~-----IVD~dFR~qFeIARpT-------~~Y 237 (392)
+...++..++++||...+|-+.-+. +..+.. .++|+.+-- ...-| |++.-++.+..+-.|+ ..+
T Consensus 13 ~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~-aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~ 91 (449)
T TIGR00514 13 IALRILRACKELGIKTVAVHSTADRDALHVLL-ADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANF 91 (449)
T ss_pred HHHHHHHHHHHcCCeEEEEEChhhhccccccc-CCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHH
Confidence 5677899999999999999663332 122211 123322200 00011 2222222232222221 225
Q ss_pred HHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016256 238 KSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWR 281 (392)
Q Consensus 238 ~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWR 281 (392)
..+++.+--.|+|...+...+.+= =..+++-|++.|.+.|||-
T Consensus 92 a~~~e~~Gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gip~pp~~ 134 (449)
T TIGR00514 92 AEQCERSGFTFIGPSAESIRLMGD-KVSAIETMKKAGVPCVPGS 134 (449)
T ss_pred HHHHHHCCCcEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 667888887788866554333221 1358889999999999984
No 18
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=34.82 E-value=76 Score=32.32 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 016256 236 TYKSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPW 280 (392)
Q Consensus 236 ~Y~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPW 280 (392)
.+..+++.+-..|+|.......+.+= =..+++-|++.|.+.|||
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gIp~pp~ 133 (451)
T PRK08591 90 DFAEICEDSGFTFIGPSAETIRLMGD-KVTAKATMKKAGVPVVPG 133 (451)
T ss_pred HHHHHHHHCCCceECcCHHHHHHhcC-HHHHHHHHHHcCCCCCCC
Confidence 46678888888888876554433322 235788999999999998
No 19
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=30.13 E-value=2e+02 Score=25.47 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEc--CeeEEEecCcccc
Q 016256 174 RKIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQ--GERLIVDIDFRSE 227 (392)
Q Consensus 174 rr~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~--~~R~IVD~dFR~q 227 (392)
=+.++..|+..||.+- |+..+++ |.+-.||++.. +.-++||+-.|..
T Consensus 9 E~~a~~~L~~~G~~vl----R~~~sG~---~~~~eiDIIA~~~~~lvfVEVK~r~~ 57 (123)
T cd00523 9 ERELVKILEEKGFAVV----RAPGSGG---GPRPLPDIVAGNGGTYLAIEVKSTKK 57 (123)
T ss_pred HHHHHHHHHhCCCEEE----EEcCCCC---CCCCceeEEEecCCEEEEEEEEecCC
Confidence 4778999999999887 2222222 23668999974 5788899988865
No 20
>PHA01753 Holliday junction resolvase
Probab=29.21 E-value=2.2e+02 Score=25.58 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCceEEEeecCCCCCCCCCcccceEEEEEc--CeeEEEecCcccc
Q 016256 173 CRKIVTDGLLALGYDASICKSRWDKTPSYPTGEYEYIDVVIQ--GERLIVDIDFRSE 227 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkSrW~~S~~~paG~hEYIDVv~~--~~R~IVD~dFR~q 227 (392)
.-+.++..|+..|| .+....|..++ .|-.||++.. +.-++||+-.|+.
T Consensus 10 ~E~~a~~~L~~~G~--~il~rn~~~~~-----~~GEiDIIA~~~~~lvfVEVKtR~~ 59 (121)
T PHA01753 10 YEYKTLEILESNGF--KALRIPVSGTG-----KQALPDIIATKNNTIYPIEVKSTSK 59 (121)
T ss_pred HHHHHHHHHHHCCC--EEEEeccccCC-----CCCCccEEEeeCCEEEEEEEEeCCC
Confidence 34778999999999 66677775532 3567999974 5788899988865
No 21
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=26.48 E-value=2.7e+02 Score=26.61 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCceEEEeecCCCCC---CCCCc------ccceEEEEEcCeeEEEecCcccceeeccCcHHHHHHHHhCC
Q 016256 175 KIVTDGLLALGYDASICKSRWDKTP---SYPTG------EYEYIDVVIQGERLIVDIDFRSEFEIARSTKTYKSILQILP 245 (392)
Q Consensus 175 r~v~~~LR~~GydAaiCkSrW~~S~---~~paG------~hEYIDVv~~~~R~IVD~dFR~qFeIARpT~~Y~~lL~~LP 245 (392)
+.|.+.|+++||++.++...-.... .+..- .-.-+|+++. +++ ..+. -...+.++++.+=
T Consensus 21 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~----~~~----g~~~---~~~~~~~~le~~g 89 (315)
T TIGR01205 21 AAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFP----VLH----GRYG---EDGTIQGLLELMG 89 (315)
T ss_pred HHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEE----ecC----CCCC---CCcHHHHHHHHcC
Confidence 5678889999999999976532111 11100 0011344432 111 0000 1124677888888
Q ss_pred CceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCch
Q 016256 246 YLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWRKA 283 (392)
Q Consensus 246 ~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWRk~ 283 (392)
--|+|.......+.. ==..+++-|++.|.++|+|+..
T Consensus 90 ip~~g~~~~~~~~~~-dK~~~~~~l~~~gip~p~~~~~ 126 (315)
T TIGR01205 90 IPYTGSGVLASALSM-DKLLTKLLWKALGLPTPDYIVL 126 (315)
T ss_pred CCccCCCHHHHHHHH-CHHHHHHHHHHCCCCCCCEEEE
Confidence 788897533322211 1135778899999999999853
No 22
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=25.24 E-value=4.9e+02 Score=24.35 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCceEEE-----eecCCCCCCCCCcccceEEEEEcCeeEEEecCcccceeeccCcHHH-HHHHHhCCCc
Q 016256 174 RKIVTDGLLALGYDASIC-----KSRWDKTPSYPTGEYEYIDVVIQGERLIVDIDFRSEFEIARSTKTY-KSILQILPYL 247 (392)
Q Consensus 174 rr~v~~~LR~~GydAaiC-----kSrW~~S~~~paG~hEYIDVv~~~~R~IVD~dFR~qFeIARpT~~Y-~~lL~~LP~v 247 (392)
-+.|...|++.||++.+- .-.|.... ....++ |+++. | . +..-+..| ..++..+...
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~---d~v~~--r-----~------~~~~~~~~~~~~le~~g~~ 74 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPFGERP-KELEDV---DVAII--R-----C------VSQSRALYSARLLEALGVP 74 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEcCCCc-cccCCC---CEEEE--c-----C------cchhhHHHHHHHHHHCCCc
Confidence 467888999999998762 33454210 000112 22221 1 0 01111222 3456666656
Q ss_pred eeeChhhHHHHHHHHHHH--HHHHHHhcCCCCCCCCch
Q 016256 248 FVGKADRLQKIIAIASEA--AKQSLKKKGMHVPPWRKA 283 (392)
Q Consensus 248 FVG~~erL~~iV~lmc~A--ak~S~k~~Gm~lPPWRk~ 283 (392)
++++++ .+.+..+- +++-|++.|.++|||...
T Consensus 75 ~~n~~~----~~~~~~dK~~~~~~l~~~gip~P~t~~~ 108 (280)
T TIGR02144 75 VINSSH----VIEACGDKIFTYLKLAKAGVPTPRTYLA 108 (280)
T ss_pred EECcHH----HHHHHhhHHHHHHHHHHCCcCCCCeEee
Confidence 778764 44445554 667789999999999653
No 23
>PRK05586 biotin carboxylase; Validated
Probab=24.28 E-value=2.8e+02 Score=28.57 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 016256 236 TYKSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPW 280 (392)
Q Consensus 236 ~Y~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPW 280 (392)
....+++.+--.|+|...+...+..= =..+|+-|++.|.++|||
T Consensus 90 ~~a~~~~~~gi~~~g~s~~~~~~~~D-K~~~k~~l~~~GIpvp~~ 133 (447)
T PRK05586 90 KFAKMCKECNIVFIGPDSETIELMGN-KSNAREIMIKAGVPVVPG 133 (447)
T ss_pred HHHHHHHHCCCcEECcCHHHHHhhCC-HHHHHHHHHHCCCCCCCC
Confidence 44556777777788876654443321 146788899999999998
No 24
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=22.92 E-value=1.2e+02 Score=31.88 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhcCCceEEEeecCCC-CCCCCCc----------ccceEEE--EEc-----C-eeEEEecCcccceeeccC
Q 016256 173 CRKIVTDGLLALGYDASICKSRWDK-TPSYPTG----------EYEYIDV--VIQ-----G-ERLIVDIDFRSEFEIARS 233 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAaiCkSrW~~-S~~~paG----------~hEYIDV--v~~-----~-~R~IVD~dFR~qFeIARp 233 (392)
+-..++..++.+||.+..|-+.-+. +..+..- ...|+|. ++. + ..++.=..|-+ |
T Consensus 13 ~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~ls--E---- 86 (478)
T PRK08463 13 IAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLS--E---- 86 (478)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccc--c----
Confidence 4567788899999998777665332 2211111 1234441 110 1 11111112211 1
Q ss_pred cHHHHHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 016256 234 TKTYKSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWRK 282 (392)
Q Consensus 234 T~~Y~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWRk 282 (392)
.......+..+--.|+|+......+..== ..+|+.|++.|.++|||-.
T Consensus 87 ~~~~a~~~e~~Gi~~iGps~~~i~~~~DK-~~~k~~l~~~gIpvpp~~~ 134 (478)
T PRK08463 87 NYEFAKAVEDAGIIFIGPKSEVIRKMGNK-NIARYLMKKNGIPIVPGTE 134 (478)
T ss_pred CHHHHHHHHHCCCceecCCHHHHHhhCcH-HHHHHHHHHcCCCCCCCcc
Confidence 12345677788888899865544444332 5788899999999999854
No 25
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=22.54 E-value=1.3e+02 Score=27.86 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCCccccccccCCCccc-chHHHHHHHhhhcCCCChhhHhHHHHHHHHHHHhhhc
Q 016256 112 NESSEDELDSYYGDSNLA-SSAEACEILKSLVPCASVSERNLLADTAKIVEKNKIC 166 (392)
Q Consensus 112 ~d~sdde~d~~~~~s~~~-a~~e~~e~Lk~l~~~~s~~Er~Llad~~~ave~~~~c 166 (392)
.|+.|||+|.+ ..+... .-.+-.+.|+++.. .=.+++.+++...|+.++.
T Consensus 38 ~deldEEfD~~-ps~~~~~~lr~Rydrlr~va~----rvQ~vlgd~At~gERl~al 88 (156)
T PF08372_consen 38 PDELDEEFDTF-PSSRPPDSLRMRYDRLRSVAG----RVQNVLGDVATQGERLQAL 88 (156)
T ss_pred cchhhhhhccc-ccccccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 34445666654 222221 23445555555432 3345677777777776653
No 26
>PHA02119 hypothetical protein
Probab=21.26 E-value=55 Score=27.43 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCCceE
Q 016256 173 CRKIVTDGLLALGYDAS 189 (392)
Q Consensus 173 ~rr~v~~~LR~~GydAa 189 (392)
+-|-+++.||++||++.
T Consensus 55 ~~~divdylr~lgy~~~ 71 (87)
T PHA02119 55 MPKDIVDYLRSLGYDAK 71 (87)
T ss_pred ccHHHHHHHHHccchhc
Confidence 57889999999999974
No 27
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=21.16 E-value=1.7e+02 Score=31.12 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCceeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 016256 236 TYKSILQILPYLFVGKADRLQKIIAIASEAAKQSLKKKGMHVPPWRK 282 (392)
Q Consensus 236 ~Y~~lL~~LP~vFVG~~erL~~iV~lmc~Aak~S~k~~Gm~lPPWRk 282 (392)
...+.++.+=-.|+|+....-.+..= =..+++-|++.|.++|||..
T Consensus 90 ~~a~~~e~~gi~~iGps~~~i~~~~D-K~~~k~~l~~~GVpv~p~~~ 135 (499)
T PRK08654 90 EFAKACEKAGIVFIGPSSDVIEAMGS-KINAKKLMKKAGVPVLPGTE 135 (499)
T ss_pred HHHHHHHHCCCcEECCCHHHHHHhCC-HHHHHHHHHHcCcCCCCCcC
Confidence 45567777777899976543333211 12478889999999999975
No 28
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.50 E-value=4.4e+02 Score=30.82 Aligned_cols=102 Identities=18% Similarity=0.308 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCceEEEeecCCC-CCCCCCcccceEEEEE-c---------C-eeEEEecCcccceeeccCcHHHHHHH
Q 016256 174 RKIVTDGLLALGYDASICKSRWDK-TPSYPTGEYEYIDVVI-Q---------G-ERLIVDIDFRSEFEIARSTKTYKSIL 241 (392)
Q Consensus 174 rr~v~~~LR~~GydAaiCkSrW~~-S~~~paG~hEYIDVv~-~---------~-~R~IVD~dFR~qFeIARpT~~Y~~lL 241 (392)
-..++..|+++||.+.++.+..+. +..+.-.++-|.+-.. . + ..+| +.|-.|.. -.....|
T Consensus 577 ~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI--~~~gg~~~-----~~la~~l 649 (1050)
T TIGR01369 577 CVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVI--VQFGGQTP-----LNLAKAL 649 (1050)
T ss_pred HHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEE--EccCcHhH-----HHHHHHH
Confidence 356799999999999999887654 2222222222332210 0 1 1222 22222210 1123345
Q ss_pred HhCCCceeeChhh-HHHHHHHHHHHHHHHHHhcCCCCCCCCchh
Q 016256 242 QILPYLFVGKADR-LQKIIAIASEAAKQSLKKKGMHVPPWRKAE 284 (392)
Q Consensus 242 ~~LP~vFVG~~er-L~~iV~lmc~Aak~S~k~~Gm~lPPWRk~~ 284 (392)
..+---++|+..+ +..+-. =..+++-|++.|++.|+|....
T Consensus 650 e~~Gi~i~G~s~~~i~~~~D--K~~f~~lL~~~GIp~P~~~~v~ 691 (1050)
T TIGR01369 650 EEAGVPILGTSPESIDRAED--REKFSELLDELGIPQPKWKTAT 691 (1050)
T ss_pred HHCCCcEECCCHHHHHHHCC--HHHHHHHHHHCCcCCCCeEEEC
Confidence 5444445675543 322222 1246788999999999997643
Done!