BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016257
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 250
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 306
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 307 ISTACHPTENIIASAALE 324
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 243
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 299
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 300 ISTACHPTENIIASAALE 317
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 231
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 287
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 288 ISTACHPTENIIASAALE 305
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 248
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 304
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 305 ISTACHPTENIIASAALE 322
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 225
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 281
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 282 ISTACHPTENIIASAALE 299
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 227
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 283
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 284 ISTACHPTENIIASAALE 301
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 222
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 278
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 279 ISTACHPTENIIASAALE 296
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FS D+ + + S D + +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
+W T +T + E + RFS + + P + V G L+ V++++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 187
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
IGH L + +++S DG A G KDG + D+ +
Sbjct: 188 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 223
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FS D+ + + S D + +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
+W T +T + E + RFS + + P + V G L+ V++++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 210
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
IGH L + +++S DG A G KDG + D+ +
Sbjct: 211 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 246
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVL 158
NL + P DA C FS DG R A+ G D L++ + +L E KAH+ VL
Sbjct: 611 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGADKTLQVFKAETGEKLL-EIKAHEDEVL 667
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
FS D F+AT S D +IW + G +S E++ C F+ L
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS-EQVNCCHFTNSSHHLLL 722
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDMD-FSLDSEFLATTSTDGS 177
S D ++F++ D +I W L + L E + H + FS+DS LAT +G
Sbjct: 1099 ISHDATKFSSTSADKTAKI--WSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156
Query: 178 ARIWKTEDG 186
RIW +G
Sbjct: 1157 IRIWNVSNG 1165
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 48/205 (23%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C S A G +G + I+ + RI + K+V + F+ D + L ++S D
Sbjct: 972 CCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDA 1031
Query: 177 SARIWKTE------------------------------DGVA--WTFLTRNSDE------ 198
++W + DG W +T N ++
Sbjct: 1032 EIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQ 1091
Query: 199 -KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLD 255
+ C S D TK F + A + +D+ GH +R A S+D
Sbjct: 1092 GTVLSCDISHDATK---FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA----FSVD 1144
Query: 256 GKYLAMGSKDGDICVVDVKKMEINH 280
LA G +G+I + +V E+ H
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLH 1169
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
P+++++ +P+T+ VY + + EGD G E
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
T NL + P DA C FS DG R A+ G D L++ + +LD
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
VL FS D ++AT S D +IW + G +S E++ C F+
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 L 214
L
Sbjct: 716 L 716
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDG 176
+ F+ DG + D +++ +W + + +AH+ +V D DS L + S DG
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLL-SWSFDG 1065
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STWN 235
+ ++W G T + + C S D TK F + A + +D+ S +
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLS-CAISSDATK---FSSTSADKTAKIWSFDLLSPLH 1121
Query: 236 KI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
++ GH +R A SLDG LA G +G+I + +V ++ H
Sbjct: 1122 ELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
P+++++ +P+T+ VY + + EGD G E
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
T NL + P DA C FS DG R A+ G D L++ + +LD
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
VL FS D ++AT S D +IW + G +S E++ C F+
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 L 214
L
Sbjct: 723 L 723
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDG 176
+ F+ DG + D +++ +W + + +AH+ +V D DS L + S DG
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLL-SWSFDG 1072
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STWN 235
+ ++W G T + + C S D TK F + A + +D+ S +
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLS-CAISSDATK---FSSTSADKTAKIWSFDLLSPLH 1128
Query: 236 KI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
++ GH +R A SLDG LA G +G+I + +V ++ H
Sbjct: 1129 ELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDND----LKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
D T+A +P T G +F V G + +L + L +++S DG
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL-------SIAYSPDG 176
Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
A+G +DG + I + +++ + + FS DS+ L T S DG +I+ +
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 130 GGVDGHLRIMHWPSLRIILD-EPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187
G +D +++ W R+ L + H+ V+ +D S A++S D R+W E+G
Sbjct: 54 GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113
Query: 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRK 245
+ + L FS D +L G + V + G K L +
Sbjct: 114 QIKSIDAGPVDAWTLA-FSPD--SQYLATGTHVGKVNIFGV-------ESGKKEYSLDTR 163
Query: 246 PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303
+LSI+ DGKYLA G+ DG I + D+ ++ H + H I + F P +++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGH-AMPIRSLTFSPDSQLL 221
Query: 304 LTASKE 309
+TAS +
Sbjct: 222 VTASDD 227
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG- 186
A+ +D H+R+ + + I + FS DS++LAT + G I+ E G
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP 246
++ TR + I +S DG +L G ++ ++DI+T + P
Sbjct: 156 KEYSLDTRG--KFILSIAYSPDG--KYLASGAIDG---IINIFDIATGKLLHTLEGHAMP 208
Query: 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCP 298
L+ S D + L S DG I + DV+ + + L S L V FCP
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANL---AGTLSGHASWVLNVAFCP 258
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 7/163 (4%)
Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
K VL + FS D+ + + D + R+W + T + + RFS P +
Sbjct: 110 KDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVI 169
Query: 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274
V G L+ V+D++T + + + +++S DG A KDG + D+
Sbjct: 170 ---VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317
K E + G I + F P R + A+ E G I L
Sbjct: 227 KGEA---LSEMAAGAPINQICFSP-NRYWMCAATEKGIRIFDL 265
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ- 115
Y F D +++A +P V + +++ V G + M L
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG---------ECMHTLSRGAHTD 153
Query: 116 --KCLSFS--VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT 171
C+ FS +D +GG D +++ + R++ D V + S D A+
Sbjct: 154 WVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 172 TSTDGSARIWKTEDGVA 188
+ DG AR+W G A
Sbjct: 214 SDKDGVARLWDLTKGEA 230
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 17/201 (8%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FSLD+ + + S D + +
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 180 IWKTEDGVAWTFLTRNSDEK--IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-- 235
+W T +T + + RFS + +P + DK + V+++S
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA--SWDKT-VKVWNLSNCKLR 554
Query: 236 --KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293
GH + S +++S DG A G KDG + + D+ + + + L + I
Sbjct: 555 STLAGHTGYV----STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY---SLEANSVIHA 607
Query: 294 VEFCPTQRVVLTASKEWGAMI 314
+ F P R L A+ E G I
Sbjct: 608 LCFSP-NRYWLCAATEHGIKI 627
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 250 LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298
LSIS +GKY+A G KD + + D+ + + + + G++I + F P
Sbjct: 219 LSISPNGKYIATGGKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNP 265
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 13/162 (8%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
CL + D + +G D ++I +L SVL + + D + T S+D
Sbjct: 138 CLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
+ R+W G L + + + L RF+ + C+ R +AV+D+++
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHL-RFN---NGMMVTCSKDRS----IAVWDMASPTD 245
Query: 237 IGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277
I +R+L A+V + D KY+ S D I V + E
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE 287
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD 175
+ + FS DG A G D +RI + +I++ + + +D+ + L + S D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 176 GSARIWKTEDG 186
+ RIW G
Sbjct: 187 RTVRIWDLRTG 197
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306
A+V S GKY+ G KDG I DV S LH SI+ ++F P +T+
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITS 236
Query: 307 SKEWGAMITKLTVPADWKEWQ 327
S++ + + ++ K+++
Sbjct: 237 SRDTNSFLVDVSTLQVLKKYE 257
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
GP ++ S G+ +A+GG DG +R+ H+
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHHF 344
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 19/167 (11%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
CL++S DG+ G +G LR+ W +L+ H++ ++ + ++ D + + +
Sbjct: 113 CLAWSHDGNSIVTGVENGELRL--WNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 176 GSARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQR------GDKALLA 227
+W G L I S DG+ V G K +
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230
Query: 228 VYDIS----TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270
VY I+ T IGH P SVL + K L S DG + +
Sbjct: 231 VYQITEKTPTGKLIGH----HGPISVLEFNDTNKLLLSASDDGTLRI 273
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----------DEKIELC 203
H + ++F+ ++ L + S DG+ RIW +G + +S D+K+ C
Sbjct: 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISC 306
Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263
S DG+ ++++ L++ D P IS DG+ A+
Sbjct: 307 --SMDGS--VRLWSLKQNTLLALSIVD-------------GVPIFAGRISQDGQKYAVAF 349
Query: 264 KDGDICVVDVKKM 276
DG + V D+KK+
Sbjct: 350 MDGQVNVYDLKKL 362
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177
L F+ G F + G D L P I + K SVL D S+D +++ T S D
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 178 ARIWK 182
A +++
Sbjct: 330 ATVYE 334
>pdb|3EK3|A Chain A, Crystal Structure Of Nitroreductase With Bound Fmn
(yp_211706.1) From Bacteroides Fragilis Nctc 9343 At
1.70 A Resolution
Length = 190
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 133 DGHLR----------IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
D HLR H P+L I+ +EPK + D ++++ FLA TS G A W
Sbjct: 76 DKHLRERGHSETYCCYYHAPTLVIVSNEPKQWWAGXDCACAIENXFLAATSL-GIASCWI 134
Query: 183 TEDG 186
+ G
Sbjct: 135 NQLG 138
>pdb|1T9O|A Chain A, Crystal Structure Of V44g Cp Rubredoxin
pdb|1T9O|B Chain B, Crystal Structure Of V44g Cp Rubredoxin
pdb|1T9O|C Chain C, Crystal Structure Of V44g Cp Rubredoxin
Length = 54
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 50 YTSPLVTYVFDESEGDPMTIAVNPSG------DDFVCSTTNGGCKLFE 91
YT + Y+++ +GDP VNP DD+VC GG FE
Sbjct: 4 YTCTVCGYIYNPEDGDPDN-GVNPGTDFKDIPDDWVCPLCGGGKDQFE 50
>pdb|3R9C|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 With
Econazole Bound
pdb|3R9B|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|C Chain C, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
Length = 418
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
+AV SGD C L + G T +NL+A + P + + + DGSR +
Sbjct: 232 VAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRT-PGQWAALAADGSRAS 290
Query: 129 A 129
A
Sbjct: 291 A 291
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 24/138 (17%)
Query: 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLF--------EVYGGATDINLLAKKMPPL 109
+ EGD ++ P G F + +G C+LF +VY D N ++P +
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN--DNELPIV 301
Query: 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKS----VLDMDFS 163
++FS+ G AG +G + W +L ++L+ S + + S
Sbjct: 302 TS------VAFSISGRLLFAGYSNGDCYV--WDTLLAEMVLNLGTLQNSHEGRISCLGLS 353
Query: 164 LDSEFLATTSTDGSARIW 181
D L T S D + +IW
Sbjct: 354 SDGSALCTGSWDKNLKIW 371
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 31/183 (16%)
Query: 129 AGGVDGHLRIMHWPS---------LRIILDEPKAHK-------SVLDMDFSLDSEF---- 168
+G DG RIM W S L + LD KA + L ++ EF
Sbjct: 352 SGSYDG--RIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 409
Query: 169 -LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL---FCTVQRGDKA 224
+A+ + DG + +D + L + + I+ R + G+ L + V +
Sbjct: 410 KVASANNDGFTAVLTNDDDLL--ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467
Query: 225 LLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--NHW 281
+ V+ +S K LR S +SIS Y+A G G I + D++ E+ + W
Sbjct: 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 527
Query: 282 SKR 284
+ R
Sbjct: 528 AFR 530
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,514,565
Number of Sequences: 62578
Number of extensions: 513297
Number of successful extensions: 1310
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 121
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)