Query 016257
Match_columns 392
No_of_seqs 688 out of 3251
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 05:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.2E-50 2.7E-55 328.0 27.6 320 4-355 115-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-48 2.5E-53 320.4 23.3 282 3-316 174-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 8.6E-48 1.9E-52 311.6 27.4 317 54-385 106-468 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-45 3.2E-50 302.1 22.1 280 61-355 173-458 (459)
5 KOG0279 G protein beta subunit 100.0 9.1E-42 2E-46 265.7 30.7 295 53-357 5-313 (315)
6 KOG0286 G-protein beta subunit 100.0 9.9E-42 2.2E-46 267.2 30.5 286 4-316 55-343 (343)
7 KOG0286 G-protein beta subunit 100.0 1.4E-41 3.1E-46 266.3 31.3 287 55-355 47-343 (343)
8 KOG0318 WD40 repeat stress pro 100.0 2.3E-41 4.9E-46 284.9 34.6 337 4-357 103-602 (603)
9 KOG0315 G-protein beta subunit 100.0 5.3E-41 1.2E-45 257.4 29.1 281 20-327 11-297 (311)
10 KOG0284 Polyadenylation factor 100.0 9E-43 2E-47 284.6 19.4 288 4-322 96-384 (464)
11 KOG0279 G protein beta subunit 100.0 4.7E-40 1E-44 256.2 31.1 288 4-318 15-313 (315)
12 KOG0273 Beta-transducin family 100.0 1E-39 2.2E-44 271.4 29.6 329 4-357 178-523 (524)
13 KOG0263 Transcription initiati 100.0 8.9E-40 1.9E-44 288.2 24.6 260 55-322 370-653 (707)
14 KOG0291 WD40-repeat-containing 100.0 8.9E-38 1.9E-42 273.8 35.6 331 4-362 96-555 (893)
15 KOG0291 WD40-repeat-containing 100.0 1.1E-37 2.4E-42 273.2 35.4 326 4-361 265-616 (893)
16 KOG0284 Polyadenylation factor 100.0 3E-40 6.4E-45 269.9 18.0 276 62-358 95-381 (464)
17 KOG0285 Pleiotropic regulator 100.0 7.8E-39 1.7E-43 257.6 24.9 287 54-357 142-439 (460)
18 KOG0273 Beta-transducin family 100.0 2.2E-38 4.8E-43 263.5 27.7 284 5-318 236-523 (524)
19 KOG0295 WD40 repeat-containing 100.0 1.3E-38 2.9E-43 256.7 23.8 289 52-355 97-404 (406)
20 KOG0295 WD40 repeat-containing 100.0 1.9E-38 4.1E-43 255.9 23.9 288 4-317 108-405 (406)
21 KOG0645 WD40 repeat protein [G 100.0 5.4E-37 1.2E-41 238.2 30.1 287 54-357 5-311 (312)
22 KOG0263 Transcription initiati 100.0 3E-38 6.5E-43 278.6 26.0 250 5-276 379-651 (707)
23 KOG0265 U5 snRNP-specific prot 100.0 3.2E-37 6.9E-42 242.8 26.9 284 56-353 40-334 (338)
24 KOG0296 Angio-associated migra 100.0 1.2E-36 2.6E-41 245.5 29.2 321 4-357 64-398 (399)
25 cd00200 WD40 WD40 domain, foun 100.0 7.6E-36 1.6E-40 256.7 35.7 281 4-316 9-289 (289)
26 KOG0319 WD40-repeat-containing 100.0 4.3E-37 9.3E-42 268.9 27.6 330 4-364 105-584 (775)
27 KOG0265 U5 snRNP-specific prot 100.0 1.6E-36 3.5E-41 238.8 27.5 282 4-317 47-337 (338)
28 KOG0266 WD40 repeat-containing 100.0 1.4E-36 3E-41 274.3 30.2 287 4-318 159-454 (456)
29 KOG0645 WD40 repeat protein [G 100.0 2.6E-35 5.6E-40 228.9 29.3 283 5-318 15-311 (312)
30 KOG0315 G-protein beta subunit 100.0 1.9E-35 4.1E-40 227.0 28.1 261 4-296 40-308 (311)
31 KOG0266 WD40 repeat-containing 100.0 1.5E-35 3.2E-40 267.6 32.5 290 56-357 151-454 (456)
32 KOG0281 Beta-TrCP (transducin 100.0 1.4E-37 3E-42 249.7 17.1 275 62-362 196-482 (499)
33 KOG0285 Pleiotropic regulator 100.0 8.3E-36 1.8E-40 240.2 26.9 285 4-320 151-441 (460)
34 cd00200 WD40 WD40 domain, foun 100.0 6.9E-35 1.5E-39 250.7 34.4 283 58-355 4-289 (289)
35 KOG0292 Vesicle coat complex C 100.0 6.4E-36 1.4E-40 266.4 28.2 316 4-363 9-354 (1202)
36 KOG0282 mRNA splicing factor [ 100.0 1E-36 2.2E-41 254.4 19.1 281 6-316 216-503 (503)
37 PLN00181 protein SPA1-RELATED; 100.0 2.2E-34 4.9E-39 278.8 36.3 288 59-356 479-792 (793)
38 KOG0278 Serine/threonine kinas 100.0 3E-36 6.5E-41 231.5 18.1 291 4-326 14-305 (334)
39 PLN00181 protein SPA1-RELATED; 100.0 3.1E-34 6.8E-39 277.7 36.8 288 4-317 483-792 (793)
40 KOG0293 WD40 repeat-containing 100.0 2.5E-35 5.3E-40 241.6 24.2 287 4-320 224-515 (519)
41 KOG0282 mRNA splicing factor [ 100.0 2.6E-36 5.6E-41 252.1 17.4 290 52-355 203-503 (503)
42 KOG0318 WD40 repeat stress pro 100.0 2.1E-33 4.6E-38 237.0 33.6 294 52-357 48-392 (603)
43 KOG0319 WD40-repeat-containing 100.0 1.7E-34 3.6E-39 252.8 27.4 287 4-318 323-619 (775)
44 KOG0276 Vesicle coat complex C 100.0 2.5E-34 5.5E-39 247.3 27.0 281 4-314 13-295 (794)
45 KOG0306 WD40-repeat-containing 100.0 6.7E-34 1.4E-38 249.5 28.9 329 1-358 317-665 (888)
46 KOG0296 Angio-associated migra 100.0 5.4E-34 1.2E-38 230.3 26.0 306 55-373 56-373 (399)
47 KOG0316 Conserved WD40 repeat- 100.0 1.5E-33 3.2E-38 214.9 24.1 247 57-322 11-261 (307)
48 KOG0281 Beta-TrCP (transducin 100.0 7.1E-35 1.5E-39 234.2 17.3 273 4-321 197-480 (499)
49 KOG0276 Vesicle coat complex C 100.0 1.3E-33 2.9E-38 242.9 25.5 248 58-319 8-258 (794)
50 KOG0293 WD40 repeat-containing 100.0 6.6E-34 1.4E-38 233.3 21.5 292 54-357 215-513 (519)
51 KOG0292 Vesicle coat complex C 100.0 1.8E-33 3.9E-38 250.9 25.6 285 59-358 5-322 (1202)
52 KOG0973 Histone transcription 100.0 4.1E-33 9E-38 254.4 27.0 307 4-319 13-356 (942)
53 KOG0310 Conserved WD40 repeat- 100.0 7.9E-33 1.7E-37 231.6 25.8 281 4-319 26-310 (487)
54 KOG0275 Conserved WD40 repeat- 100.0 5.5E-34 1.2E-38 227.3 17.7 289 6-316 215-507 (508)
55 KOG0316 Conserved WD40 repeat- 100.0 3E-32 6.4E-37 207.8 24.6 277 3-316 16-297 (307)
56 KOG1407 WD40 repeat protein [F 100.0 6.4E-32 1.4E-36 209.0 26.8 273 4-309 20-293 (313)
57 KOG0640 mRNA cleavage stimulat 100.0 8.7E-33 1.9E-37 219.0 22.1 295 4-318 112-426 (430)
58 KOG1407 WD40 repeat protein [F 100.0 3E-32 6.5E-37 210.8 23.9 251 57-322 14-265 (313)
59 KOG0283 WD40 repeat-containing 100.0 1.6E-32 3.6E-37 244.4 25.9 257 55-320 258-578 (712)
60 KOG0277 Peroxisomal targeting 100.0 1.8E-32 3.8E-37 211.3 22.5 280 66-356 11-308 (311)
61 KOG0306 WD40-repeat-containing 100.0 4.9E-32 1.1E-36 237.9 27.9 280 5-319 374-665 (888)
62 KOG0277 Peroxisomal targeting 100.0 2.5E-32 5.4E-37 210.5 22.2 294 5-317 9-308 (311)
63 KOG0641 WD40 repeat protein [G 100.0 8.2E-31 1.8E-35 199.0 29.9 299 2-318 30-349 (350)
64 KOG0643 Translation initiation 100.0 2.8E-32 6.1E-37 211.6 22.3 282 4-318 10-317 (327)
65 KOG0305 Anaphase promoting com 100.0 2.4E-31 5.1E-36 231.0 28.2 247 60-320 214-463 (484)
66 KOG0275 Conserved WD40 repeat- 100.0 8.5E-33 1.8E-37 220.5 17.3 288 61-355 211-507 (508)
67 PTZ00421 coronin; Provisional 100.0 9.1E-31 2E-35 235.5 32.5 240 58-299 70-314 (493)
68 KOG0313 Microtubule binding pr 100.0 5.2E-31 1.1E-35 214.1 26.9 263 33-318 123-418 (423)
69 KOG1446 Histone H3 (Lys4) meth 100.0 4.5E-30 9.6E-35 204.4 31.1 287 58-359 9-305 (311)
70 KOG0288 WD40 repeat protein Ti 100.0 5.1E-32 1.1E-36 222.2 17.6 281 4-316 175-459 (459)
71 KOG0268 Sof1-like rRNA process 100.0 2E-32 4.4E-37 221.1 14.6 287 57-363 60-351 (433)
72 PTZ00421 coronin; Provisional 100.0 9.7E-30 2.1E-34 228.9 32.2 252 64-321 21-293 (493)
73 KOG0313 Microtubule binding pr 100.0 2E-30 4.4E-35 210.7 23.8 276 61-356 103-417 (423)
74 KOG0294 WD40 repeat-containing 100.0 9.8E-30 2.1E-34 202.1 26.5 268 34-322 10-285 (362)
75 PTZ00420 coronin; Provisional 100.0 3.9E-29 8.4E-34 226.0 33.6 254 32-300 51-318 (568)
76 KOG0268 Sof1-like rRNA process 100.0 1.4E-31 3.1E-36 216.2 16.0 280 6-322 68-349 (433)
77 KOG0310 Conserved WD40 repeat- 100.0 6.9E-30 1.5E-34 214.1 25.8 284 63-361 26-313 (487)
78 KOG0772 Uncharacterized conser 100.0 3.1E-30 6.6E-35 217.5 23.7 297 52-355 156-485 (641)
79 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-28 3.7E-33 195.5 31.4 283 3-319 13-304 (311)
80 KOG0274 Cdc4 and related F-box 100.0 9.9E-30 2.2E-34 229.1 27.3 280 61-363 206-488 (537)
81 KOG0274 Cdc4 and related F-box 100.0 1.2E-29 2.7E-34 228.5 27.8 280 5-326 209-490 (537)
82 KOG0640 mRNA cleavage stimulat 100.0 4.2E-30 9E-35 203.8 21.3 297 55-356 104-425 (430)
83 KOG0289 mRNA splicing factor [ 100.0 1.9E-29 4.2E-34 208.4 25.8 240 64-316 220-460 (506)
84 KOG0772 Uncharacterized conser 100.0 1E-29 2.2E-34 214.4 23.8 293 5-316 168-485 (641)
85 KOG0278 Serine/threonine kinas 100.0 9.6E-31 2.1E-35 201.3 14.5 281 56-360 7-300 (334)
86 KOG0289 mRNA splicing factor [ 100.0 4.4E-29 9.5E-34 206.3 24.5 279 7-317 222-505 (506)
87 KOG0973 Histone transcription 100.0 3.3E-29 7.1E-34 229.1 26.1 293 60-360 10-358 (942)
88 KOG0643 Translation initiation 100.0 2.7E-28 5.8E-33 189.7 26.6 238 57-311 4-254 (327)
89 KOG0283 WD40 repeat-containing 100.0 3.1E-29 6.7E-34 223.6 23.3 249 4-275 267-577 (712)
90 KOG0264 Nucleosome remodeling 100.0 2.6E-28 5.6E-33 203.1 26.8 308 4-318 40-404 (422)
91 KOG0300 WD40 repeat-containing 100.0 7.4E-29 1.6E-33 197.5 21.1 274 31-321 166-479 (481)
92 KOG2055 WD40 repeat protein [G 100.0 3E-28 6.4E-33 203.0 25.5 290 4-318 213-512 (514)
93 PTZ00420 coronin; Provisional 100.0 1.5E-27 3.2E-32 215.8 32.2 226 81-320 50-295 (568)
94 KOG0288 WD40 repeat protein Ti 100.0 5.7E-30 1.2E-34 210.2 14.7 286 55-355 167-459 (459)
95 KOG0647 mRNA export protein (c 100.0 3.5E-28 7.7E-33 192.1 24.0 249 63-326 27-289 (347)
96 KOG0305 Anaphase promoting com 100.0 1.1E-28 2.5E-33 214.4 23.2 243 4-276 217-463 (484)
97 KOG0299 U3 snoRNP-associated p 100.0 4E-28 8.6E-33 202.2 24.8 289 5-318 143-456 (479)
98 KOG0299 U3 snoRNP-associated p 100.0 2.1E-28 4.5E-33 203.8 22.8 256 57-320 136-412 (479)
99 KOG0641 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 175.7 30.4 288 61-357 30-349 (350)
100 KOG0647 mRNA export protein (c 100.0 1E-27 2.2E-32 189.6 24.2 274 4-309 27-315 (347)
101 KOG0301 Phospholipase A2-activ 100.0 8.1E-28 1.8E-32 209.8 25.1 283 54-358 5-289 (745)
102 KOG0639 Transducin-like enhanc 100.0 2.6E-28 5.6E-33 205.5 21.0 284 6-318 421-704 (705)
103 KOG0639 Transducin-like enhanc 100.0 2.2E-28 4.8E-33 205.9 19.7 283 61-356 417-703 (705)
104 KOG0264 Nucleosome remodeling 100.0 6.8E-28 1.5E-32 200.6 22.3 259 4-275 124-405 (422)
105 KOG1036 Mitotic spindle checkp 100.0 6.3E-27 1.4E-31 185.7 24.9 268 4-308 13-294 (323)
106 KOG1332 Vesicle coat complex C 100.0 7.9E-28 1.7E-32 184.7 19.1 260 59-323 7-291 (299)
107 KOG1539 WD repeat protein [Gen 100.0 7.1E-26 1.5E-30 201.6 34.1 316 7-356 162-647 (910)
108 KOG2048 WD40 repeat protein [G 100.0 6.8E-26 1.5E-30 197.4 32.7 323 4-359 25-363 (691)
109 KOG0771 Prolactin regulatory e 100.0 2.8E-27 6.2E-32 195.4 22.8 203 115-319 147-355 (398)
110 KOG1539 WD repeat protein [Gen 100.0 1.7E-26 3.6E-31 205.6 29.1 196 113-318 449-648 (910)
111 KOG0308 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 207.0 21.5 317 31-365 43-401 (735)
112 KOG2096 WD40 repeat protein [G 100.0 5.9E-27 1.3E-31 186.7 22.5 254 53-316 76-400 (420)
113 KOG0308 Conserved WD40 repeat- 100.0 5.1E-28 1.1E-32 209.6 17.8 284 68-359 29-329 (735)
114 KOG1063 RNA polymerase II elon 100.0 1.6E-26 3.4E-31 201.8 26.7 338 6-357 193-699 (764)
115 KOG2106 Uncharacterized conser 100.0 2.4E-25 5.2E-30 187.7 31.8 278 5-318 201-521 (626)
116 KOG1408 WD40 repeat protein [F 100.0 1.3E-26 2.9E-31 203.0 24.4 290 8-319 328-714 (1080)
117 KOG0269 WD40 repeat-containing 100.0 2E-27 4.3E-32 209.8 18.5 292 4-320 39-342 (839)
118 KOG0300 WD40 repeat-containing 100.0 1.4E-26 3.1E-31 184.5 20.6 289 54-359 139-478 (481)
119 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.4E-24 3E-29 188.4 34.6 263 34-323 10-284 (300)
120 KOG1036 Mitotic spindle checkp 100.0 1.2E-25 2.7E-30 178.4 25.1 245 63-326 13-270 (323)
121 KOG2106 Uncharacterized conser 100.0 7.7E-25 1.7E-29 184.7 31.3 317 5-357 155-521 (626)
122 KOG0294 WD40 repeat-containing 100.0 2.2E-25 4.7E-30 177.5 26.4 272 77-362 3-286 (362)
123 KOG0646 WD40 repeat protein [G 100.0 3.8E-26 8.2E-31 190.8 22.6 223 63-301 81-332 (476)
124 KOG1408 WD40 repeat protein [F 100.0 1.3E-25 2.8E-30 196.9 26.2 200 156-358 461-714 (1080)
125 KOG0269 WD40 repeat-containing 100.0 9.1E-27 2E-31 205.6 18.9 250 64-320 40-298 (839)
126 KOG0301 Phospholipase A2-activ 99.9 1.7E-25 3.7E-30 195.4 26.0 253 34-318 34-288 (745)
127 KOG1273 WD40 repeat protein [G 99.9 1.3E-25 2.9E-30 178.7 22.5 277 66-357 26-322 (405)
128 KOG2445 Nuclear pore complex c 99.9 3.7E-25 8E-30 175.6 24.7 256 60-323 10-323 (361)
129 KOG0646 WD40 repeat protein [G 99.9 2.6E-25 5.7E-30 185.8 25.1 236 76-325 51-314 (476)
130 KOG1274 WD40 repeat protein [G 99.9 6.2E-25 1.3E-29 197.7 28.4 245 61-320 11-264 (933)
131 KOG2055 WD40 repeat protein [G 99.9 4.2E-25 9.1E-30 184.3 24.8 281 63-357 213-512 (514)
132 KOG4328 WD40 protein [Function 99.9 4.9E-25 1.1E-29 183.7 24.1 293 4-318 186-495 (498)
133 KOG0267 Microtubule severing p 99.9 2.6E-27 5.6E-32 207.6 10.4 236 59-309 24-259 (825)
134 KOG1063 RNA polymerase II elon 99.9 2.5E-24 5.5E-29 188.1 26.9 333 8-360 149-651 (764)
135 KOG1274 WD40 repeat protein [G 99.9 1.8E-24 3.8E-29 194.8 26.3 273 7-315 16-297 (933)
136 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.3E-29 167.6 20.5 232 31-274 29-286 (299)
137 KOG2048 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 183.8 29.4 279 63-357 25-319 (691)
138 KOG0307 Vesicle coat complex C 99.9 5.6E-26 1.2E-30 209.2 16.0 301 7-321 9-330 (1049)
139 KOG1273 WD40 repeat protein [G 99.9 2.9E-24 6.3E-29 171.1 23.6 288 7-326 26-330 (405)
140 KOG0321 WD40 repeat-containing 99.9 1E-24 2.2E-29 188.9 22.6 294 8-320 53-393 (720)
141 KOG4283 Transcription-coupled 99.9 3.3E-24 7.1E-29 169.4 22.5 212 60-277 40-279 (397)
142 KOG0290 Conserved WD40 repeat- 99.9 1.1E-23 2.3E-28 166.1 25.1 298 3-315 43-362 (364)
143 KOG0650 WD40 repeat nucleolar 99.9 1.5E-24 3.4E-29 186.5 22.0 285 54-355 391-733 (733)
144 KOG4283 Transcription-coupled 99.9 1.1E-23 2.3E-28 166.5 24.6 290 4-318 43-365 (397)
145 KOG0270 WD40 repeat-containing 99.9 2E-24 4.3E-29 179.5 21.4 289 20-322 138-453 (463)
146 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-24 5.8E-29 181.2 21.0 267 7-300 37-305 (673)
147 KOG4328 WD40 protein [Function 99.9 3.3E-24 7.3E-29 178.8 21.0 292 58-357 181-495 (498)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-22 2.3E-27 176.6 31.5 271 76-363 2-285 (300)
149 KOG1034 Transcriptional repres 99.9 6.7E-24 1.4E-28 170.0 19.7 291 3-318 37-383 (385)
150 KOG0302 Ribosome Assembly prot 99.9 1.1E-23 2.4E-28 171.7 21.1 256 52-312 140-433 (440)
151 KOG1007 WD repeat protein TSSC 99.9 3.3E-23 7.1E-28 163.2 22.6 277 32-320 37-363 (370)
152 KOG1009 Chromatin assembly com 99.9 9.9E-23 2.1E-27 167.7 25.0 302 4-320 13-374 (434)
153 KOG0267 Microtubule severing p 99.9 3.3E-25 7.2E-30 194.5 11.2 212 34-266 49-260 (825)
154 KOG1445 Tumor-specific antigen 99.9 4.4E-23 9.4E-28 179.0 22.9 197 156-357 629-844 (1012)
155 KOG2919 Guanine nucleotide-bin 99.9 1.8E-22 4E-27 161.5 23.2 288 7-318 52-367 (406)
156 KOG0650 WD40 repeat nucleolar 99.9 6.6E-23 1.4E-27 176.6 22.0 286 4-315 400-732 (733)
157 KOG4378 Nuclear protein COP1 [ 99.9 8.6E-23 1.9E-27 172.2 21.7 267 36-321 13-283 (673)
158 KOG1538 Uncharacterized conser 99.9 8.3E-23 1.8E-27 178.3 21.6 279 5-318 13-293 (1081)
159 KOG1445 Tumor-specific antigen 99.9 5.3E-23 1.1E-27 178.5 20.3 129 56-185 72-201 (1012)
160 KOG0321 WD40 repeat-containing 99.9 1.2E-22 2.7E-27 176.1 21.9 287 67-360 53-394 (720)
161 KOG0303 Actin-binding protein 99.9 2E-22 4.4E-27 165.3 21.6 282 5-299 28-320 (472)
162 KOG2919 Guanine nucleotide-bin 99.9 4.6E-22 9.9E-27 159.2 22.2 253 65-322 51-331 (406)
163 KOG2445 Nuclear pore complex c 99.9 1.2E-21 2.7E-26 155.8 24.1 253 6-274 15-318 (361)
164 KOG0270 WD40 repeat-containing 99.9 4.2E-22 9.1E-27 165.8 22.4 286 67-362 129-454 (463)
165 KOG0302 Ribosome Assembly prot 99.9 4.1E-22 8.8E-27 162.6 20.0 228 34-271 174-435 (440)
166 KOG0307 Vesicle coat complex C 99.9 7.1E-23 1.5E-27 188.9 16.0 256 4-277 64-330 (1049)
167 KOG2096 WD40 repeat protein [G 99.9 2E-21 4.4E-26 155.3 20.9 246 110-362 84-365 (420)
168 KOG1007 WD repeat protein TSSC 99.9 4.8E-21 1E-25 151.2 20.9 262 4-275 63-362 (370)
169 PRK11028 6-phosphogluconolacto 99.9 2.8E-19 6E-24 156.8 34.2 273 33-320 10-306 (330)
170 KOG0322 G-protein beta subunit 99.9 3.2E-21 6.9E-26 150.3 17.5 250 53-317 4-322 (323)
171 COG2319 FOG: WD40 repeat [Gene 99.9 5.8E-18 1.2E-22 154.2 39.1 333 4-367 65-410 (466)
172 KOG2110 Uncharacterized conser 99.9 2.4E-19 5.1E-24 146.4 25.9 242 63-319 5-249 (391)
173 KOG0642 Cell-cycle nuclear pro 99.9 1.8E-21 3.8E-26 166.8 14.2 260 54-320 285-563 (577)
174 KOG1034 Transcriptional repres 99.9 7.6E-20 1.6E-24 146.9 22.5 288 58-356 33-382 (385)
175 KOG4227 WD40 repeat protein [G 99.9 2.3E-20 5.1E-25 153.3 18.9 263 52-320 45-324 (609)
176 KOG1587 Cytoplasmic dynein int 99.9 2.5E-19 5.5E-24 160.8 27.1 297 5-318 181-516 (555)
177 KOG0649 WD40 repeat protein [G 99.9 8.9E-19 1.9E-23 135.2 25.1 283 7-315 13-313 (325)
178 KOG1188 WD40 repeat protein [G 99.9 3.8E-20 8.2E-25 149.4 18.3 271 31-318 46-346 (376)
179 KOG0303 Actin-binding protein 99.9 1.8E-19 4E-24 148.1 22.2 206 109-321 78-297 (472)
180 KOG1963 WD40 repeat protein [G 99.9 1.1E-18 2.5E-23 157.3 28.5 292 60-362 202-543 (792)
181 COG2319 FOG: WD40 repeat [Gene 99.9 6E-18 1.3E-22 154.0 34.0 289 58-360 60-362 (466)
182 KOG1009 Chromatin assembly com 99.9 3.6E-19 7.8E-24 146.9 22.7 290 63-360 13-375 (434)
183 KOG0649 WD40 repeat protein [G 99.8 2E-18 4.3E-23 133.3 23.9 238 64-319 11-275 (325)
184 KOG1523 Actin-related protein 99.8 4.4E-19 9.4E-24 142.2 20.7 228 4-256 10-261 (361)
185 KOG0642 Cell-cycle nuclear pro 99.8 3.6E-20 7.8E-25 158.9 15.3 262 7-282 297-569 (577)
186 KOG2139 WD40 repeat protein [G 99.8 5.3E-18 1.1E-22 138.2 24.3 289 6-318 100-431 (445)
187 PRK01742 tolB translocation pr 99.8 2.1E-18 4.6E-23 155.8 23.3 220 58-299 198-426 (429)
188 KOG1538 Uncharacterized conser 99.8 9.4E-19 2E-23 153.2 20.0 267 65-358 14-294 (1081)
189 KOG0290 Conserved WD40 repeat- 99.8 2.7E-18 5.8E-23 135.9 20.1 248 63-321 44-321 (364)
190 KOG1963 WD40 repeat protein [G 99.8 2.6E-17 5.5E-22 148.7 28.7 325 11-362 23-492 (792)
191 KOG1524 WD40 repeat-containing 99.8 8E-19 1.7E-23 149.9 17.8 258 61-337 12-271 (737)
192 KOG0644 Uncharacterized conser 99.8 7.1E-20 1.5E-24 163.8 11.1 253 56-322 183-472 (1113)
193 PRK11028 6-phosphogluconolacto 99.8 1.4E-16 3.1E-21 139.7 31.2 246 5-274 35-304 (330)
194 KOG2111 Uncharacterized conser 99.8 5.1E-17 1.1E-21 130.4 25.0 241 65-320 7-258 (346)
195 KOG1524 WD40 repeat-containing 99.8 8.4E-18 1.8E-22 143.7 21.7 207 76-314 76-282 (737)
196 KOG1188 WD40 repeat protein [G 99.8 1.5E-17 3.2E-22 134.6 21.6 270 76-357 41-346 (376)
197 PF02239 Cytochrom_D1: Cytochr 99.8 2E-16 4.3E-21 138.4 30.7 261 53-327 26-356 (369)
198 KOG1523 Actin-related protein 99.8 1E-17 2.2E-22 134.4 19.7 227 62-299 9-260 (361)
199 KOG4227 WD40 repeat protein [G 99.8 1.4E-17 2.9E-22 137.2 20.1 291 4-317 56-386 (609)
200 KOG1272 WD40-repeat-containing 99.8 3.5E-19 7.5E-24 149.5 10.4 234 63-318 129-362 (545)
201 KOG1587 Cytoplasmic dynein int 99.8 2.8E-17 6.1E-22 147.8 23.1 258 3-275 241-517 (555)
202 KOG1517 Guanine nucleotide bin 99.8 4.8E-17 1.1E-21 149.5 24.8 293 6-320 1066-1383(1387)
203 KOG2394 WD40 protein DMR-N9 [G 99.8 5.7E-17 1.2E-21 138.7 22.8 231 37-298 146-384 (636)
204 KOG0771 Prolactin regulatory e 99.8 7.2E-18 1.6E-22 140.2 15.7 195 67-275 148-355 (398)
205 KOG1240 Protein kinase contain 99.8 1.9E-16 4.2E-21 147.7 26.6 268 1-278 1045-1338(1431)
206 KOG0322 G-protein beta subunit 99.8 1.4E-17 3.1E-22 130.1 16.0 244 5-273 15-322 (323)
207 PRK01742 tolB translocation pr 99.8 3E-17 6.4E-22 148.4 18.8 212 84-318 183-401 (429)
208 KOG1517 Guanine nucleotide bin 99.8 2.1E-16 4.5E-21 145.4 23.9 248 63-320 1064-1335(1387)
209 KOG2110 Uncharacterized conser 99.8 7.9E-15 1.7E-19 120.2 30.5 279 6-322 7-334 (391)
210 KOG1310 WD40 repeat protein [G 99.8 1E-17 2.2E-22 143.7 14.1 218 54-281 41-310 (758)
211 PRK03629 tolB translocation pr 99.8 7.7E-16 1.7E-20 138.9 26.6 222 59-298 194-427 (429)
212 KOG1334 WD40 repeat protein [G 99.8 2.6E-17 5.7E-22 139.1 14.2 296 55-360 134-469 (559)
213 KOG1240 Protein kinase contain 99.7 7.2E-16 1.6E-20 144.0 23.9 270 48-322 1033-1338(1431)
214 KOG1272 WD40-repeat-containing 99.7 6.8E-18 1.5E-22 141.8 9.6 232 114-357 131-362 (545)
215 KOG3881 Uncharacterized conser 99.7 6.8E-16 1.5E-20 127.3 20.5 223 62-299 104-342 (412)
216 KOG4497 Uncharacterized conser 99.7 5.8E-16 1.3E-20 125.0 19.1 271 7-320 51-393 (447)
217 PRK05137 tolB translocation pr 99.7 3.1E-15 6.7E-20 135.8 26.3 236 37-298 182-432 (435)
218 PF10282 Lactonase: Lactonase, 99.7 2.2E-13 4.8E-18 119.6 36.9 274 33-320 11-324 (345)
219 KOG2139 WD40 repeat protein [G 99.7 1.8E-15 3.8E-20 123.7 21.1 232 63-310 98-367 (445)
220 KOG2321 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 129.5 23.2 289 2-327 49-352 (703)
221 PRK02889 tolB translocation pr 99.7 3.2E-15 7E-20 135.0 25.0 236 37-299 176-425 (427)
222 KOG4497 Uncharacterized conser 99.7 7.4E-17 1.6E-21 130.0 12.5 220 68-315 13-237 (447)
223 PRK04922 tolB translocation pr 99.7 3.9E-15 8.4E-20 134.9 24.6 220 59-298 199-432 (433)
224 PF08662 eIF2A: Eukaryotic tra 99.7 1.4E-15 3.1E-20 121.1 18.9 151 158-318 9-179 (194)
225 PRK03629 tolB translocation pr 99.7 1.7E-14 3.8E-19 130.1 26.8 206 86-311 180-396 (429)
226 KOG3881 Uncharacterized conser 99.7 4.7E-15 1E-19 122.4 20.6 250 63-321 55-323 (412)
227 KOG2041 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 128.2 25.0 292 3-319 13-338 (1189)
228 KOG0644 Uncharacterized conser 99.7 8.3E-17 1.8E-21 144.5 9.8 240 109-360 187-471 (1113)
229 PRK05137 tolB translocation pr 99.7 4.1E-14 9E-19 128.4 26.2 204 86-309 183-397 (435)
230 KOG2111 Uncharacterized conser 99.7 1.9E-13 4.1E-18 110.2 26.4 191 21-233 61-257 (346)
231 PF08662 eIF2A: Eukaryotic tra 99.7 1.2E-14 2.6E-19 115.8 19.6 150 116-276 9-181 (194)
232 KOG1334 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 129.1 14.3 288 4-318 142-466 (559)
233 PRK02889 tolB translocation pr 99.7 1.2E-14 2.5E-19 131.4 21.6 188 111-310 194-392 (427)
234 KOG1310 WD40 repeat protein [G 99.7 1.1E-15 2.5E-20 131.3 14.0 209 109-322 47-307 (758)
235 PRK04922 tolB translocation pr 99.7 2.3E-14 5E-19 129.9 22.5 213 85-317 184-408 (433)
236 KOG2394 WD40 protein DMR-N9 [G 99.7 8.6E-15 1.9E-19 125.6 18.3 144 63-207 219-384 (636)
237 KOG2321 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 119.4 21.9 276 61-354 49-340 (703)
238 PF10282 Lactonase: Lactonase, 99.6 1.7E-11 3.8E-16 107.7 35.1 275 8-296 40-345 (345)
239 PRK01029 tolB translocation pr 99.6 7.2E-13 1.6E-17 119.2 26.7 242 37-300 165-426 (428)
240 PF02239 Cytochrom_D1: Cytochr 99.6 8.9E-13 1.9E-17 115.6 26.3 274 76-366 6-356 (369)
241 COG2706 3-carboxymuconate cycl 99.6 1.6E-11 3.5E-16 101.3 31.8 274 34-320 15-323 (346)
242 PRK00178 tolB translocation pr 99.6 7.2E-13 1.6E-17 120.6 26.7 239 36-299 178-428 (430)
243 PRK04792 tolB translocation pr 99.6 1.2E-12 2.7E-17 118.7 27.2 222 59-298 213-446 (448)
244 TIGR02800 propeller_TolB tol-p 99.6 5.1E-13 1.1E-17 121.4 24.0 205 86-310 171-386 (417)
245 KOG2315 Predicted translation 99.6 2.4E-12 5.2E-17 111.5 25.7 233 67-320 129-392 (566)
246 KOG1354 Serine/threonine prote 99.6 2.8E-13 6E-18 110.3 18.8 253 6-277 27-362 (433)
247 TIGR02800 propeller_TolB tol-p 99.6 1.2E-12 2.6E-17 119.0 25.5 199 59-275 185-398 (417)
248 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.2E-11 4.7E-16 104.5 30.9 241 71-323 53-335 (352)
249 KOG0974 WD-repeat protein WDR6 99.6 6.4E-13 1.4E-17 122.8 20.0 269 64-358 8-289 (967)
250 PRK01029 tolB translocation pr 99.6 4E-12 8.6E-17 114.4 24.8 198 113-318 185-403 (428)
251 PRK00178 tolB translocation pr 99.5 6.9E-12 1.5E-16 114.2 26.3 213 86-318 180-404 (430)
252 KOG0280 Uncharacterized conser 99.5 8.3E-12 1.8E-16 99.7 22.6 284 20-317 25-332 (339)
253 KOG1354 Serine/threonine prote 99.5 8.6E-13 1.9E-17 107.5 16.9 251 63-320 25-361 (433)
254 COG2706 3-carboxymuconate cycl 99.5 2E-10 4.4E-15 94.9 30.4 278 5-297 40-345 (346)
255 KOG1409 Uncharacterized conser 99.5 1.6E-12 3.5E-17 105.9 17.9 254 52-320 13-272 (404)
256 PRK04792 tolB translocation pr 99.5 5.5E-12 1.2E-16 114.5 23.5 193 111-315 216-420 (448)
257 KOG4547 WD40 repeat-containing 99.5 6.1E-12 1.3E-16 109.7 22.3 190 122-320 3-222 (541)
258 KOG0974 WD-repeat protein WDR6 99.5 2.9E-12 6.3E-17 118.6 21.3 198 114-321 89-291 (967)
259 COG4946 Uncharacterized protei 99.5 1.6E-10 3.5E-15 98.5 26.6 241 61-320 357-656 (668)
260 COG5354 Uncharacterized protei 99.5 1.3E-10 2.9E-15 99.8 25.9 283 3-320 31-350 (561)
261 KOG4547 WD40 repeat-containing 99.5 2.4E-11 5.1E-16 106.1 21.7 191 73-275 3-221 (541)
262 COG4946 Uncharacterized protei 99.5 1.2E-10 2.6E-15 99.3 24.2 226 68-307 271-507 (668)
263 KOG2314 Translation initiation 99.4 2.2E-10 4.7E-15 99.5 25.3 283 65-357 251-573 (698)
264 KOG2315 Predicted translation 99.4 4E-10 8.6E-15 98.0 26.9 315 6-357 36-390 (566)
265 KOG0280 Uncharacterized conser 99.4 6.6E-10 1.4E-14 89.1 25.2 226 83-320 44-286 (339)
266 KOG2314 Translation initiation 99.4 2.4E-10 5.1E-15 99.3 23.6 277 66-358 213-526 (698)
267 PLN02919 haloacid dehalogenase 99.4 1E-09 2.3E-14 108.8 31.6 249 66-321 570-891 (1057)
268 PF04762 IKI3: IKI3 family; I 99.4 2.2E-09 4.7E-14 104.6 33.1 296 3-320 74-458 (928)
269 KOG1064 RAVE (regulator of V-A 99.4 4.2E-12 9E-17 123.5 13.4 205 58-286 2203-2410(2439)
270 COG5354 Uncharacterized protei 99.4 3.2E-10 6.8E-15 97.5 21.4 244 62-319 31-307 (561)
271 PRK04043 tolB translocation pr 99.4 1.3E-09 2.9E-14 97.6 26.6 217 37-280 169-406 (419)
272 KOG2041 WD40 repeat protein [G 99.4 4.9E-11 1.1E-15 106.5 17.0 236 63-309 14-279 (1189)
273 KOG4190 Uncharacterized conser 99.3 1E-11 2.2E-16 107.7 11.5 254 52-317 724-987 (1034)
274 KOG1064 RAVE (regulator of V-A 99.3 1.1E-11 2.4E-16 120.7 11.6 225 126-368 2182-2409(2439)
275 TIGR02658 TTQ_MADH_Hv methylam 99.3 8.3E-09 1.8E-13 88.8 28.1 261 85-365 27-338 (352)
276 KOG1409 Uncharacterized conser 99.3 2.7E-10 5.9E-15 93.2 17.5 283 4-318 68-394 (404)
277 KOG4532 WD40-like repeat conta 99.3 1.1E-09 2.4E-14 86.8 20.1 239 68-318 72-331 (344)
278 PRK04043 tolB translocation pr 99.3 6.6E-09 1.4E-13 93.1 27.9 193 114-318 189-398 (419)
279 PF04762 IKI3: IKI3 family; I 99.3 1.8E-08 4E-13 98.3 31.7 286 6-318 23-379 (928)
280 TIGR03300 assembly_YfgL outer 99.3 1.9E-08 4E-13 90.2 29.8 255 74-354 104-376 (377)
281 KOG1912 WD40 repeat protein [G 99.3 1.2E-09 2.7E-14 98.6 20.2 238 7-275 18-305 (1062)
282 KOG3914 WD repeat protein WDR4 99.3 1.3E-10 2.9E-15 96.9 12.9 166 65-241 64-232 (390)
283 COG5170 CDC55 Serine/threonine 99.3 2.9E-10 6.3E-15 91.9 14.3 249 63-318 26-367 (460)
284 PLN02919 haloacid dehalogenase 99.2 1.2E-08 2.6E-13 101.5 28.6 209 64-278 624-892 (1057)
285 TIGR03300 assembly_YfgL outer 99.2 2.3E-08 5E-13 89.5 27.2 267 74-367 64-348 (377)
286 KOG0309 Conserved WD40 repeat- 99.2 1.5E-10 3.2E-15 103.8 12.4 249 6-275 69-340 (1081)
287 PF07433 DUF1513: Protein of u 99.2 4.2E-08 9.1E-13 81.5 25.3 228 65-309 6-277 (305)
288 KOG1912 WD40 repeat protein [G 99.2 3E-09 6.4E-14 96.2 19.5 240 64-319 16-305 (1062)
289 PF15492 Nbas_N: Neuroblastoma 99.2 3.8E-08 8.3E-13 79.3 23.8 238 69-328 3-269 (282)
290 PF15492 Nbas_N: Neuroblastoma 99.2 2.9E-08 6.3E-13 80.0 22.9 227 33-282 16-267 (282)
291 KOG4714 Nucleoporin [Nuclear s 99.2 2.7E-09 5.8E-14 84.2 16.4 211 7-233 39-255 (319)
292 PF08450 SGL: SMP-30/Gluconola 99.2 9.5E-08 2.1E-12 80.1 27.0 218 67-306 3-243 (246)
293 KOG0309 Conserved WD40 repeat- 99.2 7.8E-10 1.7E-14 99.4 14.6 226 63-301 24-258 (1081)
294 KOG3914 WD repeat protein WDR4 99.2 1E-09 2.2E-14 91.8 13.6 161 157-324 65-229 (390)
295 KOG4190 Uncharacterized conser 99.2 9.6E-10 2.1E-14 95.7 14.0 267 31-314 753-1032(1034)
296 KOG4532 WD40-like repeat conta 99.1 4.6E-08 9.9E-13 77.8 20.5 187 77-274 130-331 (344)
297 COG5170 CDC55 Serine/threonine 99.1 1.1E-08 2.3E-13 83.0 15.3 252 4-274 26-367 (460)
298 KOG1832 HIV-1 Vpr-binding prot 99.0 2.7E-10 5.9E-15 104.2 5.2 218 58-306 1096-1319(1516)
299 PRK11138 outer membrane biogen 99.0 6.3E-07 1.4E-11 80.7 24.9 273 74-364 68-360 (394)
300 PF13360 PQQ_2: PQQ-like domai 99.0 2.7E-07 5.8E-12 77.1 21.0 220 84-322 2-234 (238)
301 PF08450 SGL: SMP-30/Gluconola 99.0 2E-06 4.4E-11 72.1 26.2 186 66-263 42-244 (246)
302 KOG0882 Cyclophilin-related pe 98.9 3.7E-08 8E-13 83.9 14.5 247 62-320 8-307 (558)
303 KOG1920 IkappaB kinase complex 98.9 2.1E-06 4.6E-11 82.2 26.4 241 63-318 68-365 (1265)
304 PF13360 PQQ_2: PQQ-like domai 98.9 3.2E-07 7E-12 76.6 19.4 217 133-362 2-235 (238)
305 KOG4714 Nucleoporin [Nuclear s 98.9 2.3E-08 5E-13 79.1 11.0 147 165-319 100-255 (319)
306 KOG2066 Vacuolar assembly/sort 98.9 7.6E-07 1.6E-11 81.5 21.9 189 112-318 39-233 (846)
307 PRK11138 outer membrane biogen 98.9 2.4E-06 5.2E-11 77.0 24.9 258 74-355 119-392 (394)
308 KOG4649 PQQ (pyrrolo-quinoline 98.9 8.5E-06 1.8E-10 65.1 24.3 111 75-194 23-133 (354)
309 KOG1920 IkappaB kinase complex 98.9 6E-06 1.3E-10 79.2 27.3 204 111-319 67-323 (1265)
310 KOG2695 WD40 repeat protein [G 98.8 2.2E-08 4.8E-13 82.4 9.4 150 79-242 228-386 (425)
311 KOG2695 WD40 repeat protein [G 98.8 2.3E-08 4.9E-13 82.3 8.8 155 119-283 218-385 (425)
312 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 67.6 24.3 204 113-322 5-251 (305)
313 PF14583 Pectate_lyase22: Olig 98.8 1.3E-05 2.7E-10 69.2 25.2 286 11-321 42-384 (386)
314 PF00400 WD40: WD domain, G-be 98.8 2.8E-08 6.2E-13 56.5 6.4 37 55-91 3-39 (39)
315 KOG1645 RING-finger-containing 98.8 4.2E-07 9E-12 76.6 15.6 243 58-318 188-461 (463)
316 PF00930 DPPIV_N: Dipeptidyl p 98.8 6.8E-06 1.5E-10 72.7 23.7 237 63-307 42-346 (353)
317 PF11768 DUF3312: Protein of u 98.8 2.4E-05 5.3E-10 69.8 26.5 114 157-277 208-332 (545)
318 KOG2114 Vacuolar assembly/sort 98.7 3.3E-06 7.2E-11 78.0 21.2 203 70-286 30-255 (933)
319 KOG1275 PAB-dependent poly(A) 98.7 3E-07 6.6E-12 85.1 14.3 181 75-272 147-340 (1118)
320 cd00216 PQQ_DH Dehydrogenases 98.7 1.4E-05 3E-10 73.9 25.5 286 75-376 61-443 (488)
321 PF00400 WD40: WD domain, G-be 98.7 4.1E-08 8.9E-13 55.9 5.6 39 234-272 1-39 (39)
322 PF11768 DUF3312: Protein of u 98.7 1.1E-06 2.5E-11 78.0 16.4 119 64-188 206-333 (545)
323 PF06433 Me-amine-dh_H: Methyl 98.7 5.6E-05 1.2E-09 64.0 24.6 247 66-323 38-325 (342)
324 KOG1275 PAB-dependent poly(A) 98.7 8.5E-07 1.8E-11 82.3 15.0 182 123-316 146-340 (1118)
325 KOG3617 WD40 and TPR repeat-co 98.7 8.8E-07 1.9E-11 81.6 15.0 113 63-184 15-131 (1416)
326 KOG2114 Vacuolar assembly/sort 98.7 9E-06 1.9E-10 75.3 21.2 209 6-240 27-251 (933)
327 PF04053 Coatomer_WDAD: Coatom 98.6 4.4E-05 9.6E-10 68.6 23.6 225 57-318 26-262 (443)
328 KOG1645 RING-finger-containing 98.6 3.3E-06 7.1E-11 71.3 14.9 229 136-374 175-436 (463)
329 PRK02888 nitrous-oxide reducta 98.6 2.1E-05 4.6E-10 71.9 20.8 184 71-275 200-405 (635)
330 KOG1832 HIV-1 Vpr-binding prot 98.6 7.5E-08 1.6E-12 88.8 4.9 186 111-319 1100-1292(1516)
331 KOG2066 Vacuolar assembly/sort 98.5 1.5E-05 3.3E-10 73.3 18.4 183 63-274 39-233 (846)
332 KOG3617 WD40 and TPR repeat-co 98.5 1.2E-05 2.6E-10 74.4 17.8 113 8-142 19-131 (1416)
333 PRK02888 nitrous-oxide reducta 98.5 3.5E-05 7.6E-10 70.5 20.6 186 165-358 140-405 (635)
334 COG0823 TolB Periplasmic compo 98.5 3.8E-05 8.3E-10 68.8 20.2 190 59-264 188-389 (425)
335 PF05694 SBP56: 56kDa selenium 98.5 0.0005 1.1E-08 60.1 25.4 272 33-307 35-392 (461)
336 KOG0882 Cyclophilin-related pe 98.5 2.9E-06 6.3E-11 72.7 11.5 208 111-321 8-234 (558)
337 COG3391 Uncharacterized conser 98.5 0.00017 3.8E-09 64.4 23.6 225 64-300 74-310 (381)
338 PF06977 SdiA-regulated: SdiA- 98.4 0.00025 5.5E-09 58.4 21.8 201 6-229 23-247 (248)
339 KOG1008 Uncharacterized conser 98.4 1.3E-07 2.8E-12 84.3 2.1 199 63-275 56-276 (783)
340 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00019 4.1E-09 63.6 22.0 237 72-320 1-315 (353)
341 PF08596 Lgl_C: Lethal giant l 98.4 0.00036 7.8E-09 62.0 23.4 244 65-328 3-300 (395)
342 KOG3621 WD40 repeat-containing 98.4 0.00011 2.3E-09 67.0 20.0 117 63-185 33-155 (726)
343 PF04053 Coatomer_WDAD: Coatom 98.4 0.00025 5.4E-09 63.9 22.5 178 113-314 33-219 (443)
344 KOG3621 WD40 repeat-containing 98.4 0.00018 4E-09 65.5 20.9 246 60-320 73-355 (726)
345 KOG1008 Uncharacterized conser 98.4 2.7E-07 5.9E-12 82.3 3.2 201 112-319 56-276 (783)
346 cd00216 PQQ_DH Dehydrogenases 98.3 0.00072 1.6E-08 62.7 25.6 235 76-322 111-428 (488)
347 COG3391 Uncharacterized conser 98.3 0.0019 4E-08 57.9 28.1 241 65-320 32-285 (381)
348 COG0823 TolB Periplasmic compo 98.3 3.6E-05 7.7E-10 69.0 15.1 173 135-318 174-358 (425)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0016 3.4E-08 60.8 26.3 200 75-279 69-338 (527)
350 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00039 8.5E-09 55.9 18.5 139 166-314 23-161 (354)
351 PF06977 SdiA-regulated: SdiA- 98.2 0.0019 4.2E-08 53.3 24.0 200 59-271 17-247 (248)
352 KOG4640 Anaphase-promoting com 98.2 1.1E-05 2.5E-10 72.2 9.2 94 113-207 21-115 (665)
353 PF08553 VID27: VID27 cytoplas 98.2 8.5E-05 1.8E-09 70.6 15.4 139 174-318 502-647 (794)
354 KOG1897 Damage-specific DNA bi 98.2 0.0077 1.7E-07 57.7 28.8 153 156-318 776-942 (1096)
355 PF02897 Peptidase_S9_N: Proly 98.1 0.0045 9.7E-08 56.4 26.1 196 115-318 126-357 (414)
356 PF02897 Peptidase_S9_N: Proly 98.1 0.0053 1.1E-07 55.9 26.4 222 66-301 126-383 (414)
357 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0055 1.2E-07 55.3 25.6 207 86-316 62-285 (410)
358 COG3490 Uncharacterized protei 98.1 0.0025 5.5E-08 52.2 20.5 241 65-317 69-347 (366)
359 PF00780 CNH: CNH domain; Int 98.1 0.0023 4.9E-08 54.7 22.1 229 123-368 6-266 (275)
360 PF03178 CPSF_A: CPSF A subuni 98.1 0.0012 2.6E-08 57.8 19.8 175 135-319 3-203 (321)
361 PRK13616 lipoprotein LpqB; Pro 98.0 0.00092 2E-08 62.8 19.5 157 155-321 350-528 (591)
362 PF06433 Me-amine-dh_H: Methyl 98.0 0.006 1.3E-07 52.1 22.2 206 66-284 97-330 (342)
363 PF08596 Lgl_C: Lethal giant l 98.0 0.0023 5.1E-08 56.9 20.7 202 59-263 82-325 (395)
364 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0097 2.1E-07 53.0 27.6 96 68-164 6-118 (415)
365 PRK13616 lipoprotein LpqB; Pro 98.0 0.0011 2.3E-08 62.3 19.2 187 64-269 350-563 (591)
366 KOG4640 Anaphase-promoting com 98.0 5.3E-05 1.1E-09 68.1 9.1 93 199-298 22-115 (665)
367 COG3386 Gluconolactonase [Carb 97.9 0.0097 2.1E-07 51.1 23.7 189 64-263 66-274 (307)
368 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0087 1.9E-07 54.0 23.2 167 135-319 62-247 (410)
369 PF03178 CPSF_A: CPSF A subuni 97.9 0.0034 7.3E-08 55.0 19.9 182 124-315 42-262 (321)
370 COG3386 Gluconolactonase [Carb 97.8 0.014 3.1E-07 50.0 21.8 220 68-307 29-274 (307)
371 PF08553 VID27: VID27 cytoplas 97.7 0.0028 6.1E-08 60.7 17.2 144 123-273 492-646 (794)
372 COG3490 Uncharacterized protei 97.7 0.0059 1.3E-07 50.1 16.2 153 156-309 69-246 (366)
373 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0031 6.8E-08 44.1 12.8 101 157-270 2-110 (111)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.045 9.8E-07 51.2 29.8 153 76-237 121-338 (527)
375 smart00320 WD40 WD40 repeats. 97.7 0.00017 3.6E-09 40.0 5.4 36 56-91 5-40 (40)
376 PF14583 Pectate_lyase22: Olig 97.7 0.032 7E-07 48.7 22.1 183 118-305 41-254 (386)
377 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0045 9.8E-08 43.4 13.1 103 115-227 2-109 (111)
378 KOG2395 Protein involved in va 97.6 0.0016 3.5E-08 57.8 13.1 148 165-318 344-500 (644)
379 PF00780 CNH: CNH domain; Int 97.6 0.032 6.9E-07 47.6 24.5 219 74-322 6-259 (275)
380 smart00320 WD40 WD40 repeats. 97.5 0.00029 6.3E-09 39.0 5.2 37 236-272 4-40 (40)
381 PRK10115 protease 2; Provision 97.5 0.072 1.6E-06 51.7 23.8 197 114-319 128-345 (686)
382 KOG2444 WD40 repeat protein [G 97.5 0.00016 3.5E-09 57.0 4.9 141 169-318 33-177 (238)
383 PF14870 PSII_BNR: Photosynthe 97.4 0.051 1.1E-06 46.4 19.3 151 112-271 144-301 (302)
384 KOG1897 Damage-specific DNA bi 97.4 0.14 3E-06 49.6 31.4 291 63-363 530-862 (1096)
385 PF05096 Glu_cyclase_2: Glutam 97.4 0.054 1.2E-06 44.8 22.0 185 113-308 45-250 (264)
386 KOG2395 Protein involved in va 97.4 0.0034 7.4E-08 55.8 12.0 147 120-274 341-500 (644)
387 PF15390 DUF4613: Domain of un 97.3 0.13 2.8E-06 47.1 23.9 123 61-183 54-185 (671)
388 PF10647 Gmad1: Lipoprotein Lp 97.3 0.081 1.8E-06 44.4 20.2 148 114-266 25-187 (253)
389 PF07995 GSDH: Glucose / Sorbo 97.2 0.12 2.6E-06 45.3 25.7 238 65-313 3-330 (331)
390 KOG2079 Vacuolar assembly/sort 97.2 0.009 2E-07 57.8 13.6 102 74-183 98-202 (1206)
391 TIGR03074 PQQ_membr_DH membran 97.2 0.17 3.7E-06 49.4 22.3 206 75-281 194-484 (764)
392 COG3204 Uncharacterized protei 97.2 0.048 1E-06 45.3 15.7 163 151-318 82-263 (316)
393 KOG4499 Ca2+-binding protein R 97.1 0.095 2.1E-06 42.0 18.0 134 156-298 110-263 (310)
394 KOG2079 Vacuolar assembly/sort 97.0 0.0031 6.8E-08 60.7 8.5 102 165-273 98-202 (1206)
395 PF14870 PSII_BNR: Photosynthe 97.0 0.18 3.9E-06 43.2 30.5 279 3-315 15-301 (302)
396 PHA02713 hypothetical protein; 97.0 0.043 9.3E-07 51.8 16.0 183 123-318 303-533 (557)
397 KOG4441 Proteins containing BT 97.0 0.12 2.7E-06 48.8 18.7 223 74-314 284-537 (571)
398 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0032 6.9E-08 36.8 5.2 33 244-277 11-43 (47)
399 PF10647 Gmad1: Lipoprotein Lp 97.0 0.17 3.8E-06 42.4 17.7 148 156-311 25-188 (253)
400 PF15390 DUF4613: Domain of un 97.0 0.045 9.7E-07 49.9 14.5 116 113-232 57-186 (671)
401 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0037 8E-08 36.5 5.3 34 112-146 11-44 (47)
402 PRK10115 protease 2; Provision 96.9 0.47 1E-05 46.2 30.5 238 65-320 128-396 (686)
403 COG3204 Uncharacterized protei 96.9 0.2 4.3E-06 41.8 19.1 163 61-233 83-264 (316)
404 KOG2444 WD40 repeat protein [G 96.8 0.0068 1.5E-07 48.1 7.2 104 75-184 70-177 (238)
405 PF10214 Rrn6: RNA polymerase 96.6 0.81 1.8E-05 45.3 23.1 119 64-185 146-277 (765)
406 KOG3630 Nuclear pore complex, 96.6 0.035 7.6E-07 54.3 12.1 148 64-212 101-258 (1405)
407 PHA02713 hypothetical protein; 96.6 0.39 8.4E-06 45.5 18.9 218 135-364 273-540 (557)
408 TIGR03118 PEPCTERM_chp_1 conse 96.6 0.38 8.1E-06 40.5 23.3 228 65-298 24-307 (336)
409 KOG3630 Nuclear pore complex, 96.6 0.056 1.2E-06 53.0 12.9 146 156-306 102-261 (1405)
410 PHA03098 kelch-like protein; P 96.5 0.27 6E-06 46.5 17.5 175 123-309 294-497 (534)
411 PRK13684 Ycf48-like protein; P 96.3 0.7 1.5E-05 40.7 30.4 153 154-316 172-329 (334)
412 KOG4441 Proteins containing BT 96.2 1.1 2.4E-05 42.5 20.0 235 20-278 286-550 (571)
413 KOG1916 Nuclear protein, conta 96.2 0.0085 1.8E-07 56.9 5.4 210 58-275 127-375 (1283)
414 KOG4499 Ca2+-binding protein R 96.2 0.41 8.8E-06 38.6 13.6 144 112-263 108-273 (310)
415 KOG2280 Vacuolar assembly/sort 96.1 0.55 1.2E-05 44.4 16.3 203 84-300 63-271 (829)
416 TIGR02604 Piru_Ver_Nterm putat 96.1 0.94 2E-05 40.5 22.6 138 64-211 14-197 (367)
417 COG4257 Vgb Streptogramin lyas 96.1 0.66 1.4E-05 38.4 18.1 219 113-356 62-292 (353)
418 PF12234 Rav1p_C: RAVE protein 96.0 0.32 6.8E-06 45.9 14.6 117 59-183 25-155 (631)
419 PF10395 Utp8: Utp8 family; I 96.0 1.5 3.2E-05 41.6 22.1 251 8-282 31-313 (670)
420 PHA03098 kelch-like protein; P 96.0 0.46 1E-05 45.0 16.1 147 123-278 342-515 (534)
421 PF05096 Glu_cyclase_2: Glutam 96.0 0.79 1.7E-05 38.1 17.5 151 156-316 46-201 (264)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 95.8 0.2 4.3E-06 44.9 11.9 86 156-241 309-407 (415)
423 PHA02790 Kelch-like protein; P 95.8 1.2 2.7E-05 41.4 17.6 172 123-309 271-456 (480)
424 PF12234 Rav1p_C: RAVE protein 95.7 0.57 1.2E-05 44.3 14.9 110 116-232 33-156 (631)
425 PF07995 GSDH: Glucose / Sorbo 95.6 1.5 3.2E-05 38.6 19.9 71 199-269 254-330 (331)
426 COG3823 Glutamine cyclotransfe 95.5 0.77 1.7E-05 36.4 12.5 173 123-306 55-247 (262)
427 TIGR03074 PQQ_membr_DH membran 95.4 3.1 6.7E-05 41.0 22.2 191 124-322 194-481 (764)
428 TIGR02604 Piru_Ver_Nterm putat 95.3 1.6 3.4E-05 39.1 15.9 143 114-264 15-203 (367)
429 COG5167 VID27 Protein involved 95.3 0.64 1.4E-05 42.0 12.7 150 163-319 476-633 (776)
430 PRK13684 Ycf48-like protein; P 95.2 2 4.4E-05 37.8 27.7 272 63-355 45-329 (334)
431 PF05694 SBP56: 56kDa selenium 95.1 2.4 5.1E-05 38.0 20.5 191 66-264 132-393 (461)
432 TIGR03118 PEPCTERM_chp_1 conse 95.0 1.9 4.1E-05 36.5 20.1 205 114-321 24-282 (336)
433 PF08728 CRT10: CRT10; InterP 94.9 0.63 1.4E-05 44.5 12.6 119 65-183 102-245 (717)
434 KOG2377 Uncharacterized conser 94.9 0.94 2E-05 40.3 12.7 107 62-173 65-172 (657)
435 PLN00033 photosystem II stabil 94.9 2.7 5.9E-05 37.8 18.0 144 115-271 241-396 (398)
436 PF10313 DUF2415: Uncharacteri 94.9 0.11 2.4E-06 29.4 4.7 31 64-94 1-34 (43)
437 PF10168 Nup88: Nuclear pore c 94.7 4.7 0.0001 39.4 21.0 81 64-145 85-182 (717)
438 KOG2377 Uncharacterized conser 94.6 1.3 2.9E-05 39.5 12.7 136 68-211 27-167 (657)
439 PHA02790 Kelch-like protein; P 94.6 3.6 7.8E-05 38.4 16.8 146 122-278 317-474 (480)
440 PF10214 Rrn6: RNA polymerase 94.6 5.5 0.00012 39.6 21.9 166 61-233 77-277 (765)
441 PF10313 DUF2415: Uncharacteri 94.4 0.23 5E-06 28.1 5.2 31 245-275 1-34 (43)
442 PF14781 BBS2_N: Ciliary BBSom 94.4 1.5 3.2E-05 32.2 12.4 119 68-188 3-129 (136)
443 TIGR03606 non_repeat_PQQ dehyd 94.1 4.6 0.0001 37.0 15.7 115 61-175 27-166 (454)
444 KOG2280 Vacuolar assembly/sort 94.0 5.2 0.00011 38.3 15.8 174 133-320 63-248 (829)
445 PF13449 Phytase-like: Esteras 93.9 4.2 9E-05 35.7 15.5 106 65-171 86-231 (326)
446 PF07569 Hira: TUP1-like enhan 93.9 0.45 9.7E-06 38.9 8.3 71 72-144 19-97 (219)
447 PF07569 Hira: TUP1-like enhan 93.9 0.59 1.3E-05 38.2 9.0 67 120-187 18-98 (219)
448 COG5167 VID27 Protein involved 93.8 5.2 0.00011 36.5 14.9 148 118-274 473-632 (776)
449 COG5290 IkappaB kinase complex 93.6 7.2 0.00016 37.7 16.1 92 158-256 250-348 (1243)
450 TIGR03548 mutarot_permut cycli 93.4 5.1 0.00011 35.1 21.1 65 123-188 72-151 (323)
451 PLN00033 photosystem II stabil 93.2 6.3 0.00014 35.6 33.2 145 157-315 241-396 (398)
452 PF08728 CRT10: CRT10; InterP 93.2 8.7 0.00019 37.2 16.3 100 217-318 117-246 (717)
453 COG4590 ABC-type uncharacteriz 92.9 0.84 1.8E-05 40.6 8.7 164 63-236 220-390 (733)
454 KOG2247 WD40 repeat-containing 92.9 0.017 3.6E-07 51.2 -1.5 139 115-261 37-176 (615)
455 PF12768 Rax2: Cortical protei 92.8 5.1 0.00011 34.1 13.1 117 135-252 17-144 (281)
456 KOG1898 Splicing factor 3b, su 92.8 12 0.00025 37.6 29.4 67 250-319 939-1005(1205)
457 KOG2063 Vacuolar assembly/sort 92.8 11 0.00024 37.4 16.9 69 119-188 21-100 (877)
458 KOG2247 WD40 repeat-containing 92.8 0.018 3.8E-07 51.1 -1.5 143 158-310 38-180 (615)
459 COG1520 FOG: WD40-like repeat 92.6 7.3 0.00016 34.9 16.7 107 168-281 70-178 (370)
460 COG3292 Predicted periplasmic 92.4 9.1 0.0002 35.5 18.1 231 64-314 206-443 (671)
461 PF12657 TFIIIC_delta: Transcr 92.4 1.1 2.4E-05 35.1 8.2 31 245-275 86-122 (173)
462 TIGR03606 non_repeat_PQQ dehyd 92.3 8.9 0.00019 35.2 18.1 55 155-209 30-90 (454)
463 PF13449 Phytase-like: Esteras 92.3 7.4 0.00016 34.2 21.3 148 63-211 19-228 (326)
464 KOG4460 Nuclear pore complex, 92.0 4.9 0.00011 36.8 12.3 33 290-322 167-202 (741)
465 PF14761 HPS3_N: Hermansky-Pud 91.9 5.6 0.00012 32.0 14.1 104 125-234 29-165 (215)
466 PF03022 MRJP: Major royal jel 91.9 7.5 0.00016 33.4 17.1 145 177-322 35-219 (287)
467 KOG1896 mRNA cleavage and poly 91.7 17 0.00037 37.1 27.5 178 132-318 1002-1213(1366)
468 COG4257 Vgb Streptogramin lyas 91.7 7 0.00015 32.7 19.3 238 63-316 61-303 (353)
469 COG1520 FOG: WD40-like repeat 91.4 10 0.00022 33.9 21.0 194 77-283 70-277 (370)
470 KOG1898 Splicing factor 3b, su 91.1 18 0.00039 36.3 19.7 173 135-318 854-1048(1205)
471 PF14761 HPS3_N: Hermansky-Pud 91.1 6.9 0.00015 31.5 17.6 144 167-318 29-214 (215)
472 COG4590 ABC-type uncharacteriz 90.8 1 2.2E-05 40.1 6.9 164 153-326 219-394 (733)
473 PRK14131 N-acetylneuraminic ac 90.8 12 0.00026 33.6 19.2 53 123-175 84-149 (376)
474 TIGR02276 beta_rpt_yvtn 40-res 90.0 1.8 3.8E-05 24.2 5.5 31 254-284 1-32 (42)
475 PLN02193 nitrile-specifier pro 90.0 16 0.00035 34.0 21.7 148 123-279 228-415 (470)
476 COG5276 Uncharacterized conser 89.9 11 0.00024 31.9 23.2 195 113-322 87-289 (370)
477 TIGR03547 muta_rot_YjhT mutatr 89.9 14 0.00029 32.8 19.9 53 123-175 63-128 (346)
478 COG5276 Uncharacterized conser 89.7 12 0.00025 31.8 30.2 273 63-356 86-368 (370)
479 PF02333 Phytase: Phytase; In 89.3 15 0.00033 32.7 20.5 192 123-321 67-293 (381)
480 PF07676 PD40: WD40-like Beta 89.3 1.9 4E-05 23.8 5.1 30 242-271 6-38 (39)
481 PF03088 Str_synth: Strictosid 89.2 4 8.8E-05 27.7 7.4 42 263-307 34-75 (89)
482 PF11715 Nup160: Nucleoporin N 88.9 3.2 6.8E-05 39.5 9.4 72 122-193 156-257 (547)
483 PF11715 Nup160: Nucleoporin N 88.8 3 6.6E-05 39.6 9.3 77 73-149 156-255 (547)
484 PLN02153 epithiospecifier prot 88.7 17 0.00036 32.2 20.9 66 123-188 85-171 (341)
485 KOG1983 Tomosyn and related SN 88.6 22 0.00047 36.6 15.1 33 63-95 35-67 (993)
486 PF12657 TFIIIC_delta: Transcr 87.7 7 0.00015 30.6 9.2 35 199-233 87-122 (173)
487 KOG1900 Nuclear pore complex, 87.5 10 0.00022 38.9 11.8 139 131-275 96-273 (1311)
488 TIGR02276 beta_rpt_yvtn 40-res 87.2 3.6 7.8E-05 22.9 6.0 32 164-195 1-33 (42)
489 KOG1916 Nuclear protein, conta 86.8 2.4 5.2E-05 41.3 6.9 149 37-189 155-328 (1283)
490 PF03022 MRJP: Major royal jel 86.8 19 0.00042 30.9 16.7 61 246-306 187-253 (287)
491 PF11635 Med16: Mediator compl 86.5 37 0.0008 33.9 22.2 69 245-313 260-345 (753)
492 PF10168 Nup88: Nuclear pore c 86.4 36 0.00077 33.6 23.3 74 112-186 84-181 (717)
493 PF07676 PD40: WD40-like Beta 86.4 3.9 8.4E-05 22.4 5.3 29 62-90 7-38 (39)
494 KOG3616 Selective LIM binding 86.2 29 0.00063 33.6 13.3 192 110-312 12-238 (1636)
495 KOG4460 Nuclear pore complex, 85.9 16 0.00035 33.6 11.1 77 113-189 104-203 (741)
496 smart00036 CNH Domain found in 85.2 24 0.00053 30.6 21.1 60 123-184 12-73 (302)
497 KOG1900 Nuclear pore complex, 84.5 55 0.0012 34.1 17.1 149 159-319 83-273 (1311)
498 PF14727 PHTB1_N: PTHB1 N-term 84.2 33 0.00071 31.3 27.0 288 72-370 34-373 (418)
499 KOG2109 WD40 repeat protein [G 84.2 8.1 0.00018 36.5 8.7 262 35-317 295-575 (788)
500 COG1506 DAP2 Dipeptidyl aminop 83.4 46 0.001 32.4 16.6 181 114-309 14-236 (620)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-50 Score=328.01 Aligned_cols=320 Identities=16% Similarity=0.171 Sum_probs=271.3
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+++|.|++|+|++. .+++|++ |.++++|+++ .....++.++|...|.|++|+|||+.||+|+.
T Consensus 115 ~e~Vl~~~fsp~g~---~l~tGsG------D~TvR~WD~~--------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGS---RLVTGSG------DTTVRLWDLD--------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCcEEEEEecCCCc---eEEecCC------CceEEeeccC--------CCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 57999999999884 4888888 6779999998 44455678999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 158 (392)
||+|++||.++++....... .|...|++++|.| ..++|++++.||.++|||+..++++..+.+|..+|+
T Consensus 178 dg~I~lwdpktg~~~g~~l~------gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALR------GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred CCeEEEecCCCCCccccccc------CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 99999999998876544332 4888999999976 567999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEec-----------CCCCcceE-------------
Q 016257 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-----------KDGTKPFL------------- 214 (392)
Q Consensus 159 ~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~------------- 214 (392)
|+.|--+| +|++++.|++|++|+...|++.+.+.+|.. .|+.++.+ |.+...--
T Consensus 252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 99998654 899999999999999999999998887644 78888766 22222000
Q ss_pred -------EEEEEeCCccEEEEEeCCC-ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257 215 -------FCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 215 -------~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 286 (392)
-.++++++|.++.+|+... .+++..+.+|..-|..+.||||++++|+++-|..|++||.++|+.+..+ ++|
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGH 408 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGH 408 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhc
Confidence 0169999999999999764 4577888999999999999999999999999999999999999999888 789
Q ss_pred cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc---cc-----ceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD---WK-----EWQIYSLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
-..|+.++|+.|.++|++|+.|.++++|+++..+- ++ ++.+..++++ ..+.+++.|..+++|.
T Consensus 409 -v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG-----~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 -VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG-----QRVASGGKDKVLRLWR 479 (480)
T ss_pred -cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC-----ceeecCCCceEEEeec
Confidence 99999999999999999999999999999986532 22 3444444444 4677777899999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=320.37 Aligned_cols=282 Identities=15% Similarity=0.205 Sum_probs=258.9
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC--CCeEEE
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~ 80 (392)
...||..+.|++++ .++++|+- .+.+++|+.. ......+|.||.+.|.++.|+|. +..+|+
T Consensus 174 d~rPis~~~fS~ds---~~laT~sw------sG~~kvW~~~--------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRDS---KHLATGSW------SGLVKVWSVP--------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecCC---CeEEEeec------CCceeEeecC--------CcceeEEEeccccceeeEEEccCCCccceee
Confidence 36799999999998 56888777 4569999987 45667889999999999999996 568999
Q ss_pred EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (392)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i 160 (392)
++.||++++|++.+...+..+. .|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.++
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~-------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLE-------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred eccCCceeeeccCCCcchhhhh-------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 9999999999998876544443 377899999999999999999999999999999999988888999999999
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 240 (392)
+|+|||.++++|+.|..-+|||+++++++..+.+|.. +|..++|+|+|.. +++|+.|++++|||++..+.+..+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence 9999999999999999999999999999999988655 8999999999998 899999999999999999999999
Q ss_pred cccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 241 RLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 241 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
..|..-|+.+.|+| .|.+|++++.|++++||..++..+++.+ .+| ++.|.++..++|++++++++.|.++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGH-EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999 7899999999999999999999999887 699 99999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-48 Score=311.56 Aligned_cols=317 Identities=16% Similarity=0.199 Sum_probs=264.3
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (392)
.+...+.||.++|.|++|+|+|..|++|+.|.++++||+.+........ .|...|.|++|+|||+.||+|+.|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-------gH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-------GHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-------CCccEEEEEEECCCcchhhccccC
Confidence 4555789999999999999999999999999999999999876554443 378899999999999999999999
Q ss_pred CcEEEEeCCCCceeec-ccCCCCcEEEEEecC-----CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257 134 GHLRIMHWPSLRIILD-EPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 134 g~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (392)
|+|++||.++++++.. +.+|...|++++|.| ..++|++++.||.++|||+..++++..+.+|.. +|+|+.|--
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG 257 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGG 257 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcC
Confidence 9999999999887654 566777999999976 567899999999999999999999999988765 899999987
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC-----------CCCC-------------------
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-----------LDGK------------------- 257 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~------------------- 257 (392)
+|- +++++.|++|++|+...+.....+++|...|+.++.+ |.++
T Consensus 258 ~gl------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 258 EGL------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred Cce------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 776 7999999999999999999999999999999998887 2233
Q ss_pred ------EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee--ee
Q 016257 258 ------YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ--IY 329 (392)
Q Consensus 258 ------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~ 329 (392)
.|++|+.|.++.+|+....+....-..+| ...|+.+.||||++++|+++.|.+|++|+-+.++-+..+. +.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence 49999999999999987665433334789 9999999999999999999999999999999876554331 11
Q ss_pred e-eeeeeeeeceEEEEeeecceeeeecccccccccCCC-CcccccCCCCCccccceec
Q 016257 330 S-LLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGP-KIESILRDPQSSDDQNMWN 385 (392)
Q Consensus 330 ~-~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 385 (392)
. .-......+..+++++.|.++++|++.+.+-..-.| +.+.++.+.=+.|+|.-++
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 1 111222345577778889999999999988666666 7777888777777776554
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-45 Score=302.14 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=243.8
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEE
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRI 138 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i 138 (392)
+-+.+|..+.|++|++.|+||+.+|.+++|+..+......+.. |.+.+.++.|+|. +..+++++.||++++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-------H~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-------HTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-------cccceeeEEEccCCCccceeeeccCCceee
Confidence 4467999999999999999999999999999998865555543 8899999999995 668999999999999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|.. .|.+++|.|||.. ++
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-~v~~iaf~~DGSL-----~~ 319 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK-GVFSIAFQPDGSL-----AA 319 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc-ccceeEecCCCce-----ee
Confidence 99999889988999988999999999999999999999999999999888776666654 7999999999996 79
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
+|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+ .+| ..-|+.+.|+|
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH-~nlVS~Vk~~p 397 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAH-SNLVSQVKYSP 397 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccc-cchhhheEecc
Confidence 9999999999999999999999999999999999999999999999999999999998888777 689 99999999999
Q ss_pred -CCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257 299 -TQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 299 -~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
.|.+|++++.|++++||.-......+.. .....-.....++..++++++|+++++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999987754433321 11111111223445678888999999996
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-42 Score=265.74 Aligned_cols=295 Identities=18% Similarity=0.179 Sum_probs=241.6
Q ss_pred CceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 53 PLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
..+..++++|++.|+.++..+. .+.++++++|..+.+|++.......-...+ ....|...|..+..++||++.++++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r--~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR--RLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee--eeeccceEecceEEccCCceEEecc
Confidence 3456679999999999999886 457889999999999999876432211111 1123778999999999999999999
Q ss_pred CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC-CcceEEEEecCCCC
Q 016257 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGT 210 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 210 (392)
.|+++++||+.+++..+.+.+|...|.+++|++|.+.+++|+.|.+|++|++. +.+..++.... .+.|.++.|+|+..
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999985 45555665554 77999999999964
Q ss_pred cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (392)
Q Consensus 211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 290 (392)
..+ +++++.|+++++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+..+ .| ...
T Consensus 162 ~p~---Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a-~~~ 235 (315)
T KOG0279|consen 162 NPI---IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EA-FDI 235 (315)
T ss_pred CcE---EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cC-CCe
Confidence 433 799999999999999999999999999999999999999999999999999999999999987765 55 789
Q ss_pred eEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee------------eeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 291 IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ------------IYSLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
|.+++|+|+..+|+.+. +..|+||++.......... ..............++.+..|+.|++|.+.
T Consensus 236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999999976665554 5579999998654332211 111112222334577888899999999875
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.9e-42 Score=267.19 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=244.4
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.++|+++.|++|..+ +++++. |+++.||+--.. ...+.+.-....|..++|+|.|+++|+|+-
T Consensus 55 ~~Ki~~~~ws~Dsr~---ivSaSq------DGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRR---IVSASQ------DGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred ccceeeeEecCCcCe---EEeecc------CCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCc
Confidence 478999999999854 555444 777888876522 222334444788999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
|+...||++.+.+..... ........|.+.+.++.|-+|+ .|++++.|.++.+||+++++.+..+.+|.+.|.+++++
T Consensus 118 dN~Csiy~ls~~d~~g~~-~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNV-RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred CceeEEEecccccccccc-eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence 999999999865321111 1112233589999999998865 78899999999999999999999999999999999999
Q ss_pred C-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257 164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 164 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
| +++.+++|+.|+..++||++.+.+.++|.+|.. .|.+++|.|+|.. ++++++|++.++||+|..+.+..+..
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeecc
Confidence 9 999999999999999999999999999988755 7999999999997 89999999999999999887766653
Q ss_pred --cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 243 --LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 243 --~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
...+|++++||..|++|++|..|.++.+||.-.++....+ .+| +..|+++..+|||..+++|+.|..++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-ecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3468999999999999999999999999999998888777 599 99999999999999999999999999994
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=266.32 Aligned_cols=287 Identities=13% Similarity=0.132 Sum_probs=241.3
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
.+.+|+||.+.|+++.|++|+++|++++.||.+.|||.-+......+.. ....|..++|+|.|+++|+|+.|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------PSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-------CceeEEEEEECCCCCeEEecCcCc
Confidence 4478999999999999999999999999999999999987765544433 246899999999999999999999
Q ss_pred cEEEEeCCCC------ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-
Q 016257 135 HLRIMHWPSL------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK- 207 (392)
Q Consensus 135 ~i~i~d~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~- 207 (392)
...||++.+. +....+.+|.+.+.++.|-+| ..|++++.|.++.+||+++++.+..+.+|.. .|.++.++|
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~ 197 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPS 197 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCC
Confidence 9999999754 234456778889999999885 5699999999999999999999999987765 699999999
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL 287 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 287 (392)
+++. +++++.|+..++||+|.+.+++.+.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.....
T Consensus 198 ~~nt-----FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~ 272 (343)
T KOG0286|consen 198 DGNT-----FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI 272 (343)
T ss_pred CCCe-----EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence 6776 79999999999999999999999999999999999999999999999999999999999887776654333
Q ss_pred CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257 288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 288 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
..+|++++||..|++|++|..|..+.+||.-..+..... .-..+..+.......+.++++|..+|+|.
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 678999999999999999999999999998654332211 11122222222333666778899999995
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-41 Score=284.85 Aligned_cols=337 Identities=19% Similarity=0.239 Sum_probs=261.2
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc----------------------------------
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV---------------------------------- 49 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~---------------------------------- 49 (392)
.|||.+++|+.+++|+..+.-|..++ .++|.+|..+..-
T Consensus 103 aG~I~Di~Wd~ds~RI~avGEGrerf-------g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff 175 (603)
T KOG0318|consen 103 AGPIKDISWDFDSKRIAAVGEGRERF-------GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF 175 (603)
T ss_pred ccccccceeCCCCcEEEEEecCccce-------eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe
Confidence 68999999999998844444444433 3455555322100
Q ss_pred c-cCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE
Q 016257 50 Y-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128 (392)
Q Consensus 50 ~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 128 (392)
. .+-.....++.|..-|.|+.|+|||.++++++.||.+.+||-.+++....+.. ...|.+.|.+++|+||++.++
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----SDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----CCCccccEEEEEECCCCceEE
Confidence 0 01122335677999999999999999999999999999999999987666653 335899999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeecc-------------------------------------------cCCCCcEEEEEecCC
Q 016257 129 AGGVDGHLRIMHWPSLRIILDE-------------------------------------------PKAHKSVLDMDFSLD 165 (392)
Q Consensus 129 ~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~i~~i~~~~~ 165 (392)
+++.|.+++|||+.+.+.+.++ .+|...|+++..+|+
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 9999999999998765543322 567779999999999
Q ss_pred CCeEEEEcCCCcEEEEECCCCeeeEE-------------------------------E----------------------
Q 016257 166 SEFLATTSTDGSARIWKTEDGVAWTF-------------------------------L---------------------- 192 (392)
Q Consensus 166 ~~~l~~~~~d~~i~vwd~~~~~~~~~-------------------------------~---------------------- 192 (392)
+++|++|+.||.|.-|+..++..-+. +
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l 411 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL 411 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence 99999999999999999875433100 0
Q ss_pred --------------------e-------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeeccc
Q 016257 193 --------------------T-------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLL 243 (392)
Q Consensus 193 --------------------~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~ 243 (392)
+ ........+++++|++.. ++.|+.|+.+++|.+..... ......|
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h 486 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEH 486 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE-----EEEecccceEEEEEecCCcccceeeeecc
Confidence 0 000012345777888776 79999999999999987553 3355678
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW 323 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 323 (392)
..+++++++|||+.+||++...+.+.+||+.+.+........| ...|.+++|+|+++++|+|+.|..|.||+++.|.+.
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999999999999999999999999999988755554568 999999999999999999999999999999988765
Q ss_pred ccee---eeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 324 KEWQ---IYSLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 324 ~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
-... ..-.-....+.+..+++.+.|-.|++|.+.
T Consensus 566 i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 2221 111223345678889999999999999974
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.3e-41 Score=257.36 Aligned_cols=281 Identities=15% Similarity=0.186 Sum_probs=240.0
Q ss_pred eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce
Q 016257 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99 (392)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~ 99 (392)
.+++++ +.|.+|++|+.. ++.+..+++...+.|+.+...|+++.||+++... |++||+.+.+...
T Consensus 11 viLvsA------~YDhTIRfWqa~--------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~P 75 (311)
T KOG0315|consen 11 VILVSA------GYDHTIRFWQAL--------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNP 75 (311)
T ss_pred eEEEec------cCcceeeeeehh--------cCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCc
Confidence 566654 458889999987 7888899998889999999999999999987665 9999999876421
Q ss_pred eeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEE
Q 016257 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179 (392)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~ 179 (392)
.. ....|...|.++.|..+|+++++|++||+++|||++...+. +...+..+|+++..+|+...|++|..+|.|+
T Consensus 76 v~-----t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 76 VA-----TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred ee-----EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hhccCCCCcceEEecCCcceEEeecCCCcEE
Confidence 11 11137789999999999999999999999999999985544 4556778999999999999999999999999
Q ss_pred EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc------eeeeeecccCCCcEEEEEC
Q 016257 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------NKIGHKRLLRKPASVLSIS 253 (392)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~v~~~~~s 253 (392)
+||+....+...+.......+.++...|||.. ++.+...|..++|++-.. +++..++.|...+....+|
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSM-----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcE-----EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 99999988888877666778999999999997 788888999999998753 3556678889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee
Q 016257 254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ 327 (392)
Q Consensus 254 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 327 (392)
||+++||+++.|.+++||+.++.-.......+| ...++..+||.||+||++|+.|+.+++|++...++.+.|.
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 999999999999999999999883333333688 8899999999999999999999999999999887665553
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9e-43 Score=284.60 Aligned_cols=288 Identities=16% Similarity=0.207 Sum_probs=248.9
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|..+.|.|++.+ +++|+. .+.+.+|+.. .-..+..++.|..+|.++.|++++.++++|+.
T Consensus 96 kc~V~~v~WtPeGRR---Lltgs~------SGEFtLWNg~--------~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRR---LLTGSQ------SGEFTLWNGT--------SFNFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCCCce---eEeecc------cccEEEecCc--------eeeHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 458999999999877 333333 3446788753 22333457889999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
+|.|++|+..-.... .+.. .|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+
T Consensus 159 gG~iKyWqpnmnnVk-~~~a------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVK-IIQA------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred CceEEecccchhhhH-HhhH------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 999999998655421 1111 245899999999999999999999999999998877766777777799999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~ 243 (392)
|...+|++++.|..|++||.+++.++.++..|.. .|..+.|+|++++ +++++.|..++++|+++.+.+..+++|
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhcc
Confidence 9999999999999999999999999999987654 7999999999987 899999999999999999999999999
Q ss_pred CCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 244 RKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 244 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
...+++++|+| ...+|.+|+.||.|..|.+...+.+..+..+| ...|++++|+|-|.+|++|+.|.++++|.-..+.+
T Consensus 306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred hhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 99999999999 45788999999999999999777777788899 99999999999999999999999999998876654
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-40 Score=256.23 Aligned_cols=288 Identities=11% Similarity=0.140 Sum_probs=237.5
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.+.|+.++-.+.+.. ++..++ -|.++.+|.+..+.. ........++||...|..+..++||++.++++.
T Consensus 15 ~d~Vt~la~~~~~~~--~l~sas------rDk~ii~W~L~~dd~---~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSD--ILVSAS------RDKTIIVWKLTSDDI---KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred CceEEEEEeecCCCc--eEEEcc------cceEEEEEEeccCcc---ccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 567888888887544 444433 377788999886632 245567789999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC--CCcEEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMD 161 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~ 161 (392)
|+++++||+.+++....+.. |...|.+++|++|.+.+++|+.|.+|.+|+...... .++... .+-|.++.
T Consensus 84 D~~lrlWDl~~g~~t~~f~G-------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVG-------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVR 155 (315)
T ss_pred cceEEEEEecCCcEEEEEEe-------cCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEE
Confidence 99999999999876666654 788999999999999999999999999999875443 344433 56899999
Q ss_pred ecCC--CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257 162 FSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (392)
Q Consensus 162 ~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 239 (392)
|+|+ ..+|++++.|+++++||+++.+....+.+|.. .++.++++|||.. .++|+.||.+.+||++.++.+..
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEe
Confidence 9997 67899999999999999999888888877654 7999999999997 78999999999999999998765
Q ss_pred ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc-------cCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-------LGTSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
+. +...|.+++|+|+...|+.+.. ..|+|||+.++..+..+.... ..-...+++|++||+.|++|..|+.|
T Consensus 230 l~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred cc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 54 5789999999999877776654 459999999987765543211 02235678999999999999999999
Q ss_pred EEEEee
Q 016257 313 MITKLT 318 (392)
Q Consensus 313 ~iw~~~ 318 (392)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999875
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-39 Score=271.41 Aligned_cols=329 Identities=18% Similarity=0.188 Sum_probs=261.9
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe--eC----CCCCeeEEEEcCCCCe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF--DE----SEGDPMTIAVNPSGDD 77 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~sp~~~~ 77 (392)
..+|.+++|+|-.. .+++.|++ +...++|.+............+++.+ .+ ....|++++|+.+|..
T Consensus 178 ~~~V~~~~WnP~~~--~llasg~~------~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 178 ESEVFICAWNPLRD--GLLASGSG------DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred CCceEEEecCchhh--hhhhccCC------ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 45899999999653 26777766 44577888764222211111111111 11 2357999999999999
Q ss_pred EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (392)
Q Consensus 78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 157 (392)
||+|+.||.++||+..... ...+ -.|.++|.++.|+.+|++|++++.|+++.+||..+++..+.+..|..+-
T Consensus 250 LatG~~~G~~riw~~~G~l-~~tl-------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGNL-ISTL-------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred EEEeecCcEEEEEecCchh-hhhh-------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence 9999999999999976553 2222 1388999999999999999999999999999999999888777777776
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (392)
Q Consensus 158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 237 (392)
.++.|-.+ ..+++++.|+.|+|+.+....++.++.+|++ .|.++.|+|.+.. ++++++|++++||.+......
T Consensus 322 lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~L-----LaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 322 LDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSL-----LASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccC-ceEEEEECCCCce-----EEEecCCCeeEeeecCCCcch
Confidence 78899754 4689999999999999999999999998655 8999999999997 899999999999999998888
Q ss_pred eeecccCCCcEEEEECCCC---------CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257 238 GHKRLLRKPASVLSISLDG---------KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 308 (392)
..+..|...|..+.|+|.| ..+++++.|++|++||+..+.++..+ ..| ..+|++++|+|+|+++|+|+.
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH-~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKH-QEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccC-CCceEEEEecCCCcEEEecCC
Confidence 9999999999999999964 47899999999999999999999987 578 999999999999999999999
Q ss_pred CCeEEEEEeecCccccceeeeee-e-eeeeeeceEEEEeeecceeeeeccc
Q 016257 309 EWGAMITKLTVPADWKEWQIYSL-L-LALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 309 dg~i~iw~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
||.|.+|+++..+-++.+.-.-. . .+.-.....+.....|+.+.+-|+.
T Consensus 473 dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999998776654422111 1 1111233445555568888887764
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.9e-40 Score=288.20 Aligned_cols=260 Identities=18% Similarity=0.256 Sum_probs=230.8
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc--------ceee----------------ccccCCCCC
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL----------------LAKKMPPLQ 110 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~--------~~~~----------------~~~~~~~~~ 110 (392)
+..++..-...++|..|++|+..||.|-.|..|++|.+...+. .... .........
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3334444456799999999999999999999999999985321 0000 000111346
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 190 (392)
|.++|..+.|+|+.++|+++++|+++|+|.+.+...+....+|..+|.++.|+|.|-++|+++.|++.++|.....++++
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 89999999999999999999999999999999999999899898999999999999999999999999999999999999
Q ss_pred EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 016257 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (392)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 270 (392)
.+.+|.. .|.|+.|+|+..+ +++|+.|.++++||..++..++.+.+|.++|++++|||+|++|++|+.||.|++
T Consensus 530 ifaghls-DV~cv~FHPNs~Y-----~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLS-DVDCVSFHPNSNY-----VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred hhccccc-ccceEEECCcccc-----cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 8887765 6999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
||+.+++.+..+ .+| .+.|.++.|+.+|..||+|+.|++|++||+.....
T Consensus 604 WDl~~~~~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 604 WDLANGSLVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEcCCCcchhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999988877 689 99999999999999999999999999999986544
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.9e-38 Score=273.76 Aligned_cols=331 Identities=14% Similarity=0.197 Sum_probs=256.2
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|-|++|+|++ .++|.| ..|.+++|......+.....-....++.+|...|.++.|+.|.++|++|++
T Consensus 96 k~~v~~i~fSPng---~~fav~-------~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr 165 (893)
T KOG0291|consen 96 KRGVGAIKFSPNG---KFFAVG-------CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR 165 (893)
T ss_pred cCccceEEECCCC---cEEEEE-------ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc
Confidence 5689999999999 456633 456689998865444322234456678899999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC---------------------
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--------------------- 142 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--------------------- 142 (392)
|-.+++|.++..+..... ....|..+|-++-|..+...+++.+.||.+.+|...
T Consensus 166 D~s~rl~~v~~~k~~~~~-----~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~ 240 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTY-----ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEM 240 (893)
T ss_pred cceEEEEEeccccccceE-----eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccc
Confidence 999999999876642111 112355555555555555555555555555555432
Q ss_pred --------------------------------------------------------------------------------
Q 016257 143 -------------------------------------------------------------------------------- 142 (392)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (392)
T Consensus 241 ~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD 320 (893)
T KOG0291|consen 241 DEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD 320 (893)
T ss_pred cccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC
Confidence
Q ss_pred ------------------CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEE
Q 016257 143 ------------------SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (392)
Q Consensus 143 ------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 204 (392)
+...+.+..+|...+.+++++|||+++++|+.||+|+|||.+++-|..++..|.. .|+.+.
T Consensus 321 WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~ 399 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQ 399 (893)
T ss_pred EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEE
Confidence 1112222256667899999999999999999999999999999999999998765 699999
Q ss_pred ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc-CCCcEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeee
Q 016257 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWS 282 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 282 (392)
|+..++. +++++-||+|+.||+...+..+++... .-...|++..|.|..+..|+.|. .|++|++++|+++..+
T Consensus 400 f~~~g~~-----llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 400 FTARGNV-----LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred EEecCCE-----EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 9999997 899999999999999988887777653 34567899999999999999886 4999999999999887
Q ss_pred eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc----cc----ceeeeeeeeeeeeeceEEEEeeecceeeee
Q 016257 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD----WK----EWQIYSLLLALFLASAVVFYIFFENSDSFW 354 (392)
Q Consensus 283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W 354 (392)
.+| +++|.+++|+|++..|+++|.|.+||+|++-.... .. +..+.+.|.+..++. +.-||.|.+|
T Consensus 475 -sGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV-----aTldgqItf~ 547 (893)
T KOG0291|consen 475 -SGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV-----ATLDGQITFF 547 (893)
T ss_pred -cCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE-----EEecceEEEE
Confidence 799 99999999999999999999999999999964422 11 223444555554444 4449999999
Q ss_pred cccccccc
Q 016257 355 NFPVARNQ 362 (392)
Q Consensus 355 ~~~~~~~~ 362 (392)
|+..+.+.
T Consensus 548 d~~~~~q~ 555 (893)
T KOG0291|consen 548 DIKEAVQV 555 (893)
T ss_pred Ehhhceee
Confidence 99877655
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=273.18 Aligned_cols=326 Identities=17% Similarity=0.184 Sum_probs=266.8
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+.+|+|++|++.. .++++|=. .+.+.+|.+. .-.+.+.+.-.+.+|..+.|+..|++||.|+.
T Consensus 265 ~~kvtaa~fH~~t---~~lvvgFs------sG~f~LyelP--------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 265 SSKVTAAAFHKGT---NLLVVGFS------SGEFGLYELP--------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred ccceeeeeccCCc---eEEEEEec------CCeeEEEecC--------CceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 4789999999976 56665544 3346678775 44556666666789999999999999999875
Q ss_pred C-CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 84 N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
. |.+.||+..+...+.+.. .|...+.+++++|||+++++|+.||+|+|||..++-+..++..|...|+.+.|
T Consensus 328 klgQLlVweWqsEsYVlKQQ-------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQ-------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred ccceEEEEEeeccceeeecc-------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence 5 889999998876544332 37789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCCCceeeeeec
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKR 241 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~ 241 (392)
+..++.+++++-||+|+.||+...+..+++..+..-...+++..|.|.. +.+|+.| -.|.+|++.+|+.+..+.
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhc
Confidence 9999999999999999999999999999999888778889999999995 4555554 469999999999999999
Q ss_pred ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
+|.++|.+++|+|++..|++++.|.+|++||+-... ....+ .+ ...+..++|+|+|+-|++++.||.|.+||.+..
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl--~i-~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL--EI-RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE--ee-ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 999999999999999999999999999999986542 22222 23 568999999999999999999999999999754
Q ss_pred ccccc----------------e-------eeeeeeeeeeeeceEEEEeeecceeeeeccccccc
Q 016257 321 ADWKE----------------W-------QIYSLLLALFLASAVVFYIFFENSDSFWNFPVARN 361 (392)
Q Consensus 321 ~~~~~----------------~-------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~ 361 (392)
..... . .-.+...+.......+++++..+.|.++++.++--
T Consensus 553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 32210 0 01122223334455677777888899999887653
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-40 Score=269.94 Aligned_cols=276 Identities=15% Similarity=0.199 Sum_probs=236.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
-...|..+.|.|+|+.|++|+..|.+.+|+...-.. +.....|..+|+++.|++++.++++|+.+|.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 356899999999999999999999999999744321 1122348999999999999999999999999999997
Q ss_pred CCCceeecccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 142 PSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 142 ~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
.-. .+.....|+ ..|.+++|+|+...+++++.||+|+|||....+....+.+|. -.|.++.|+|.... ++++
T Consensus 168 nmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-wdVksvdWHP~kgL-----iasg 240 (464)
T KOG0284|consen 168 NMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-WDVKSVDWHPTKGL-----IASG 240 (464)
T ss_pred chh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-CCcceeccCCccce-----eEEc
Confidence 543 344556666 689999999998999999999999999999998888887665 47999999999876 8999
Q ss_pred CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
+.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+ ++| ...++++.|+|-.
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-r~H-kkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-RGH-KKDVTSLTWHPLN 318 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-hcc-hhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999999988877766 689 9999999999954
Q ss_pred -CeEEEEeCCCeEEEEEeecCc---------cccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257 301 -RVVLTASKEWGAMITKLTVPA---------DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV 358 (392)
Q Consensus 301 -~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~ 358 (392)
.+|.+|+.||.|..|.+.... +..+|.+.+.+.++.++ +++.|+++++|.-..
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~-----tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA-----TGSNDRTVRFWTRNR 381 (464)
T ss_pred ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEe-----ecCCCcceeeeccCC
Confidence 488899999999999987332 22377888888777444 455599999997643
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-39 Score=257.61 Aligned_cols=287 Identities=12% Similarity=0.137 Sum_probs=252.0
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (392)
.+...+.+|.+.|.|+++.|..+++++|+.|++++|||+.+++....+.. |...|..+++|+--.|+++++.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-------hi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-------HIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-------hhheeeeeeecccCceEEEecCC
Confidence 34557899999999999999999999999999999999999987655543 66789999999999999999999
Q ss_pred CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (392)
Q Consensus 134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (392)
+.|+.||++..+.++.+.+|-..|++++.+|.-+.|++|+.|.++++||+++...+..+.+|.. +|.++.+.|-..+
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpq-- 291 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQ-- 291 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCc--
Confidence 9999999999999999999999999999999999999999999999999999999999987755 8999999987776
Q ss_pred EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
+++++.|++|++||++.++....+..|...+.+++.+|....+|+++.|. |+-|++..+..+..+ .+| ..-|.+
T Consensus 292 ---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl-sgh-~~iint 365 (460)
T KOG0285|consen 292 ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL-SGH-NAIINT 365 (460)
T ss_pred ---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-ccc-cceeee
Confidence 89999999999999999999999999999999999999999999999875 999999999988875 688 899999
Q ss_pred EEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeee-----------eeeceEEEEeeecceeeeeccc
Q 016257 294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLAL-----------FLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
++...|+ ++++|++.|.+.+||.+.+..++..+....+..+ -.....++++..|.+|++|.-.
T Consensus 366 l~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 366 LSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 9998776 7889999999999999988877654333322221 1134567777789999999754
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-38 Score=263.47 Aligned_cols=284 Identities=17% Similarity=0.240 Sum_probs=246.1
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d 84 (392)
--|++++|+.++ .++|+|.. ++.+++|..+. .+..+|..|.++|.++.|+.+|++|++++.|
T Consensus 236 kdVT~L~Wn~~G---~~LatG~~------~G~~riw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDG---TLLATGSE------DGEARIWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCC---CeEEEeec------CcEEEEEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 468999999998 67888877 56689998752 2234578899999999999999999999999
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 164 (392)
+++.+||..++.....+.. |..+-..+.|-.+ ..+++.+.|+.|+++.+...+++.++.+|+++|.++.|+|
T Consensus 298 ~ttilwd~~~g~~~q~f~~-------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEF-------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP 369 (524)
T ss_pred ccEEEEeccCceEEEeeee-------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence 9999999988875544432 3444567888654 4788989999999999998899999999999999999999
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc----eEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGHK 240 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 240 (392)
.+.+|++++.|++++||..........+..|.. .|..+.|+|.+... .-..+++++.|++|++||+..+.++..+
T Consensus 370 tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 370 TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred CCceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 999999999999999999998888888887765 69999999976421 1122688999999999999999999999
Q ss_pred cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
..|..+|.+++|+|+|+++|+|+.||.|++|+.++++..+.... .+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999999999999999999999887632 5679999999999999999999999998875
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=256.71 Aligned_cols=289 Identities=17% Similarity=0.221 Sum_probs=252.8
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
.+.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+. .|...+..++|+..|++|++++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-------GHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-------GHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-------ccccceeEEEEecCccEEEecC
Confidence 345667788999999999999999999999999999999999998744443 3778899999999999999999
Q ss_pred CCCcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257 132 VDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (392)
Q Consensus 132 ~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (392)
.|-.+.+||.++ .+++....+|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++..+.+ .|..++.+.||.
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGt 248 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGT 248 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCee
Confidence 999999999976 456666777777999999999999999999999999999999999999998765 899999999999
Q ss_pred cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCC---------------CCEEEEEeCCCcEEEEecCC
Q 016257 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD---------------GKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~ 275 (392)
. +++++.|.++++|-+.++++...++.|..+|.+++|.|. +.++.+++.|++|++||+.+
T Consensus 249 i-----~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 249 I-----IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred E-----EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 6 799999999999999999998999999999999999763 25899999999999999999
Q ss_pred ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee---eeeeeeeeeeeceEEEEeeecceee
Q 016257 276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ---IYSLLLALFLASAVVFYIFFENSDS 352 (392)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~ 352 (392)
+.++..+ .+| ...|..++|+|.|+||+++.+|+++++||++.....+.+. .......+......+.+++-|.+++
T Consensus 324 g~cL~tL-~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 324 GMCLFTL-VGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred CeEEEEE-ecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence 9999888 689 9999999999999999999999999999999887666553 2233333333444777788899999
Q ss_pred eec
Q 016257 353 FWN 355 (392)
Q Consensus 353 ~W~ 355 (392)
+|.
T Consensus 402 vwE 404 (406)
T KOG0295|consen 402 VWE 404 (406)
T ss_pred eee
Confidence 995
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-38 Score=255.85 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=250.7
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|+.+-|+|+- .++++.+. +.+|++|++. +..+...++||.+.+..++|+..|++|++++.
T Consensus 108 r~~vt~v~~hp~~---~~v~~as~------d~tikv~D~~--------tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 108 RSSVTRVIFHPSE---ALVVSASE------DATIKVFDTE--------TGELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred ccceeeeeeccCc---eEEEEecC------CceEEEEEcc--------chhhhhhhhccccceeEEEEecCccEEEecCC
Confidence 3578888999976 56665544 6779999887 44556779999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
|-.+++||..+..... .....|...|.++.|-|.|.+|++++.|.+|+.|++.++-++.++.+|..-|..++.+
T Consensus 171 Dl~~~LWd~~~~~~c~------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCI------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred ccchhheeHHHHHHHH------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 9999999987632111 1122467789999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE----------EEEEEeCCccEEEEEeCCC
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~d~~i~v~d~~~ 233 (392)
.||..+++++.|.++++|-+.++++...+..|. .+|.+++|.|...+.-+ -++.+++.|++|++||+.+
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 999999999999999999999998888777654 48999999875432110 1368899999999999999
Q ss_pred ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (392)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 313 (392)
+.++.++.+|...|+.++|+|.|+||+++..|+++++||++++++..... .| +.-++++.|+.+..++++|+-|.+++
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah-~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AH-EHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CC-cceeEEEecCCCCceEEeccccceee
Confidence 99999999999999999999999999999999999999999999998884 88 89999999999999999999999999
Q ss_pred EEEe
Q 016257 314 ITKL 317 (392)
Q Consensus 314 iw~~ 317 (392)
+|.-
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9963
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-37 Score=238.18 Aligned_cols=287 Identities=14% Similarity=0.171 Sum_probs=232.5
Q ss_pred ceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257 54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (392)
...+.+++|.+.+..++|+|- |..||+++.|+.|++|+...+.. .... ....-.|...|++++|+|.|++|++|+.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck--~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCK--TVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEE--EeccccchheeeeeeecCCCcEEEEeec
Confidence 345678899999999999997 88999999999999999985321 1111 1111248899999999999999999999
Q ss_pred CCcEEEEeCCCC--ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC---eeeEEEecCCCcceEEEEecC
Q 016257 133 DGHLRIMHWPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 133 dg~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~ 207 (392)
|.++.||.-..+ +++..+.+|...|.+++|+++|++||++++|+.|-||.+..+ .+...++.|.. .|..+.|+|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHP 160 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHP 160 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcC
Confidence 999999986543 567778889999999999999999999999999999999744 45666666655 699999999
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCC---CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 284 (392)
.... +++++.|++|++|+-. ...+.+++.+|...|.+++|++.|..|++++.|++++||-..+ .+..
T Consensus 161 t~dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~ 230 (312)
T KOG0645|consen 161 TEDL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG 230 (312)
T ss_pred Ccce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch
Confidence 8886 8999999999999876 4567889999999999999999999999999999999998652 2334
Q ss_pred cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee--------eeeee---eeeceEEEEeeecceeee
Q 016257 285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS--------LLLAL---FLASAVVFYIFFENSDSF 353 (392)
Q Consensus 285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~d~~i~~ 353 (392)
.| ...++.+.|. ...|++++.|+.|+++.-.....-+.|.+.. .++.. ....+.+++++.||.+++
T Consensus 231 ~~-sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 231 MH-SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred hc-ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 56 7899999998 4589999999999999887654444443222 11111 113568888999999999
Q ss_pred eccc
Q 016257 354 WNFP 357 (392)
Q Consensus 354 W~~~ 357 (392)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9874
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-38 Score=278.60 Aligned_cols=250 Identities=18% Similarity=0.262 Sum_probs=220.3
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCC-------Cccc----------------cCCceEEEeeC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFDE 61 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~-------~~~~----------------~~~~~~~~~~~ 61 (392)
--++|+.|++|+. ++|.|- .+..|++|.+.+.. ..+. .......++-|
T Consensus 379 ~~v~ca~fSddss---mlA~Gf------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 379 QGVTCAEFSDDSS---MLACGF------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred CcceeEeecCCcc---hhhccc------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3578999999984 566443 37789999998521 0110 12234446889
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
|.++|+...|+|+.++|++++.|+++++|.+.+........ .|..+|..+.|+|-|-++|+++.|++.++|..
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------GHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-------CCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 99999999999999999999999999999999887655544 37889999999999999999999999999999
Q ss_pred CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (392)
....+.+.+.+|-..|.|+.|+|+..++++||.|.++++||+.+|..++.+.+|. .+|.+++|+|+|.+ +++++
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~-----LaSg~ 596 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRY-----LASGD 596 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCce-----Eeecc
Confidence 9988888888898999999999999999999999999999999999999998765 58999999999998 89999
Q ss_pred CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (392)
Q Consensus 222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 276 (392)
.|+.|.+||+.+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+...
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999999999999998753
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=242.82 Aligned_cols=284 Identities=17% Similarity=0.203 Sum_probs=230.9
Q ss_pred EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (392)
Q Consensus 56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (392)
...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.......... ..|.++|..+.|.+|++.|++++.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l------kgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL------KGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee------ccccceeEeeeeccCCCEEEEecCCce
Confidence 34578999999999999999999999999999999976543211111 148999999999999999999999999
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
++.||+++|+...+...|.+-+..+.-+.-|. ++.+++.|+++++||+++...++++.... .++++.|..++..
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~q--- 188 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQ--- 188 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccc---
Confidence 99999999999999999988888888554454 56678899999999999999988886443 6999999999988
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---e-eeeeecccc---
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---I-NHWSKRLHL--- 287 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~-~~~~~~~~~--- 287 (392)
+.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++... . +..+ .+|.
T Consensus 189 --v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnf 265 (338)
T KOG0265|consen 189 --VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNF 265 (338)
T ss_pred --eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhh
Confidence 8999999999999999999999999999999999999999999999999999999998532 2 3322 2331
Q ss_pred CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce-eee--eeeeeeeeeceEEEEeeecceeee
Q 016257 288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW-QIY--SLLLALFLASAVVFYIFFENSDSF 353 (392)
Q Consensus 288 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~d~~i~~ 353 (392)
+.....++|+|+++.+.+|+.|..+++|+.....-+-.+ ..+ .....+......+.+++.|.+|++
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 234557789999999999999999999998764322222 111 112223335567777788888876
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=245.54 Aligned_cols=321 Identities=15% Similarity=0.159 Sum_probs=261.8
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|++++-+|+. .++++|++ |+.-.+|... +......+.+|++.|+++.|+.+|.+||||..
T Consensus 64 ~~svFavsl~P~~---~l~aTGGg------DD~AflW~~~--------~ge~~~eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 64 TDSVFAVSLHPNN---NLVATGGG------DDLAFLWDIS--------TGEFAGELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred CCceEEEEeCCCC---ceEEecCC------CceEEEEEcc--------CCcceeEecCCCCceEEEEEccCceEEEecCC
Confidence 4689999999965 68999888 5667788776 33355778999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
+|.|+||+..++.....+.. .-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.
T Consensus 127 sG~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred CccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 99999999999876555531 24578899999999999999999999999999877777888888899999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec--
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-- 241 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-- 241 (392)
|+|+.++++..||+|++|++.++.++..+.........++.++..+.. ++.+..++.+++-+..+++.+....
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~-----~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGST-----LTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccce-----eEeccCCccEEEEccccceEEEecCCC
Confidence 999999999999999999999999999887555556788888888886 7888889999888888887765554
Q ss_pred ------ccCCCcEE---EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257 242 ------LLRKPASV---LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 242 ------~~~~~v~~---~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
.+...+.+ +.++..=.+.|+|+-||+|.|||+...++.... .| +.+|..+.|-+ ..+|++++.+|.|
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~h-e~~V~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EH-EDGVTKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cC-CCceEEEEEcC-cchheeeccCceE
Confidence 23333444 455555678899999999999999988877665 56 78899999998 6899999999999
Q ss_pred EEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 313 MITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 313 ~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
++||.+++.....+ +..............+++++.|++.+|++++
T Consensus 351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999987654433 1111122222355678888899999998764
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.6e-36 Score=256.66 Aligned_cols=281 Identities=21% Similarity=0.323 Sum_probs=240.7
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|++++|+|++. ++++|+. ++.+.+|.++.. .....+..|...+..+.|+|+++.+++++.
T Consensus 9 ~~~i~~~~~~~~~~---~l~~~~~------~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 9 TGGVTCVAFSPDGK---LLATGSG------DGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred CCCEEEEEEcCCCC---EEEEeec------CcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcC
Confidence 57899999999863 4554443 667999988733 244567788999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
++.+++|++.+.+....+. .|...+.++.|+++++++++++.++.+++||+++++....+..+...+.++.|+
T Consensus 72 ~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 72 DKTIRLWDLETGECVRTLT-------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred CCeEEEEEcCcccceEEEe-------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 9999999998765433332 255689999999998888888889999999999888877777777789999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~ 243 (392)
|++.++++++.|+.+++||+++++....+..+ ...+.++.|+|++.. +++++.++.+.+||++.++.+..+..+
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchhhc
Confidence 99998988888999999999988888877754 447999999999976 677777999999999998888888788
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
...+.+++|+|++.++++++.||.|++||+.+++....+. .| ...|.+++|+|++++|++++.||.+++|+
T Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8899999999999999988889999999999888777764 67 78999999999999999999999999995
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-37 Score=268.92 Aligned_cols=330 Identities=16% Similarity=0.213 Sum_probs=259.7
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC--eEEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVCS 81 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~~ 81 (392)
.+||.-++|+|.+ .++++|+. ++.+++|++. ...+.+.|+||.+.|.++.|+|+-+ .|++|
T Consensus 105 e~Pvi~ma~~~~g---~LlAtgga------D~~v~VWdi~--------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 105 EAPVITMAFDPTG---TLLATGGA------DGRVKVWDIK--------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred CCCeEEEEEcCCC---ceEEeccc------cceEEEEEee--------CCEEEEEecCCCceEEEEEeCCccchhheeec
Confidence 6899999999988 57887666 7889999998 7788899999999999999999765 58899
Q ss_pred eCCCeEEEEEEeCCcc-ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc----------
Q 016257 82 TTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---------- 150 (392)
Q Consensus 82 ~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------- 150 (392)
..|+++++||+.+... ..... .|.+.|++++|++|+..+++++.|..+.+||+.+.+.....
T Consensus 168 ~~D~~v~vwnl~~~~tcl~~~~-------~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKRTCLHTMI-------LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred CCCceEEEEEcccCchHHHHHH-------hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 9999999999986653 11111 37788999999999888888888888888887432211000
Q ss_pred --------------------------------------------------------------------------------
Q 016257 151 -------------------------------------------------------------------------------- 150 (392)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (392)
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence
Q ss_pred -----------------------------------------cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-
Q 016257 151 -----------------------------------------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA- 188 (392)
Q Consensus 151 -----------------------------------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~- 188 (392)
.+|...|.+++...+|.+|++|+.|.++++|.++++..
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 44555677787556678999999999999998854332
Q ss_pred ---eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---------eeeecccCCCcEEEEECCCC
Q 016257 189 ---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---------IGHKRLLRKPASVLSISLDG 256 (392)
Q Consensus 189 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---------~~~~~~~~~~v~~~~~s~~~ 256 (392)
+....+| ...|.+++++..+.. ++++++.|.++++|++...+. ......|+..|++++++|+.
T Consensus 401 ~~~~a~~~gH-~~svgava~~~~~as----ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 401 SLCVAQANGH-TNSVGAVAGSKLGAS----FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred hhhhhhhccc-ccccceeeecccCcc----EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 2333344 457999999766654 279999999999999986221 12345688999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee--eeeeee-
Q 016257 257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ--IYSLLL- 333 (392)
Q Consensus 257 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~- 333 (392)
+++|||+.|.+.+||+++.......+ .+| ...|+++.|+|..+.++++|.|++|+||.+..-.-.+.+. ......
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vL-sGH-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVL-SGH-TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred ceEEecccccceeeecccCceEEEEe-eCC-ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 99999999999999999988888777 799 9999999999999999999999999999998665544432 111222
Q ss_pred eeeeeceEEEEeeecceeeeecccccccccC
Q 016257 334 ALFLASAVVFYIFFENSDSFWNFPVARNQHG 364 (392)
Q Consensus 334 ~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~ 364 (392)
.+......+++++.||-+++|++.+++++..
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 2233455788889999999999999987653
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=238.82 Aligned_cols=282 Identities=16% Similarity=0.184 Sum_probs=238.0
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.|.|+.+.|+|++ .++++|+. |..|.+|+...+.++.. .+++|.++|..+.|.+|++.|++++.
T Consensus 47 ~geI~~~~F~P~g---s~~aSgG~------Dr~I~LWnv~gdceN~~-------~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 47 KGEIYTIKFHPDG---SCFASGGS------DRAIVLWNVYGDCENFW-------VLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred cceEEEEEECCCC---CeEeecCC------cceEEEEecccccccee-------eeccccceeEeeeeccCCCEEEEecC
Confidence 5789999999988 56776665 67799999776655543 47799999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
|.+++.||.++++...+... |..-|+++.-+.-| .++.+++.|+++++||+++...+..+ ...-+++++.|
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~-------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f 182 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKG-------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGF 182 (338)
T ss_pred CceEEEEecccceeeehhcc-------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEe
Confidence 99999999999987665543 67788888855544 46778899999999999987776443 34458999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc----eeee
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG 238 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~ 238 (392)
..++..+++|+-|+.|++||++.+.....+.++.+ +|+.+..+|+|.. +.+.+.|.++++||++.. .++.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~-----llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSF-----LLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCc-----cccccccceEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999988765 8999999999998 799999999999999853 3344
Q ss_pred eecccC----CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 239 HKRLLR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 239 ~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
.+.++. ......+|+|++..+.+|+.|..+++||......+..+ .+| .+.|.++.|+|...+|.+++.|.+|++
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh-~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGH-YGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence 555442 34456799999999999999999999999888877776 689 999999999999999999999999987
Q ss_pred EEe
Q 016257 315 TKL 317 (392)
Q Consensus 315 w~~ 317 (392)
=.+
T Consensus 335 gei 337 (338)
T KOG0265|consen 335 GEI 337 (338)
T ss_pred ecc
Confidence 543
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=274.29 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=243.2
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
...|.|+.|++++.. ++.++ .++.+.+|....... .....+.+|...|.+++|+|+++++++++.
T Consensus 159 ~~sv~~~~fs~~g~~---l~~~~------~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRA---LAAAS------SDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCCCCe---EEEcc------CCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence 357899999999854 44333 467788998843221 233455899999999999999999999999
Q ss_pred CCeEEEEEEeCC-ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 84 NGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
|++++|||++.. .....+. .|...|++++|+|+++++++|+.|++|++||++++++...+..|.+.|++++|
T Consensus 224 D~tiriwd~~~~~~~~~~l~-------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLK-------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred CceEEEeeccCCCeEEEEec-------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999999444 3333333 38899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCe--eeEEEecCCCc-ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 239 (392)
++++++|++++.|+.|++||+.++. +...+..+... +++++.|+|++.+ ++++..|+.+++||++.+..+..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceee
Confidence 9999999999999999999999998 55666665554 6999999999998 89999999999999999999888
Q ss_pred ecccCCCc---EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe--CCCeEEE
Q 016257 240 KRLLRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMI 314 (392)
Q Consensus 240 ~~~~~~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i 314 (392)
...|...+ .+...++.++++++|+.|+.|++||+.++..+..+ .+|....+..++++|...++++++ .|+.+++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 88887643 34455789999999999999999999998877766 455467889999999999999998 7899999
Q ss_pred EEee
Q 016257 315 TKLT 318 (392)
Q Consensus 315 w~~~ 318 (392)
|..+
T Consensus 451 w~~~ 454 (456)
T KOG0266|consen 451 WKYD 454 (456)
T ss_pred ecCC
Confidence 9764
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=228.89 Aligned_cols=283 Identities=14% Similarity=0.167 Sum_probs=226.7
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+++..++|+|-.. .++++++. +..|++|.... +. .-.+...+ .+|+..|.+++|+|.|++|++++.
T Consensus 15 ~r~W~~awhp~~g--~ilAscg~------Dk~vriw~~~~-~~----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 15 DRVWSVAWHPGKG--VILASCGT------DKAVRIWSTSS-GD----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred CcEEEEEeccCCc--eEEEeecC------CceEEEEecCC-CC----cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 4799999999722 47777666 67799999873 21 22333334 479999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---ceeecccCCCCcEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKSVLDM 160 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i 160 (392)
|.++.||.-..++....- ..-.|...|.+++|+++|++||+++.|..|.||.+..+ ++...+..|...|..+
T Consensus 82 D~t~~Iw~k~~~efecv~-----~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVA-----TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred cceEEEeecCCCceeEEe-----eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 999999987755432211 11148899999999999999999999999999998744 3556677888899999
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCC---CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 237 (392)
.|+|...+|++++.|.+|++|+-.. -.+.+++..++. .|.+++|++.|.. ++++++|++++||-..+.
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~--- 227 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTD--- 227 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCce-----EEEecCCcceEeeeeccC---
Confidence 9999999999999999999998762 256778877655 7999999999987 899999999999986632
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc------eeeeeeeccccCcceEEEEEeeC-CCeEEEEeCCC
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLGTSIALVEFCPT-QRVVLTASKEW 310 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg 310 (392)
....|...+..++|. ...|++++.|+.|++|.-... +++......| +..|+++.|.|. ...|++|+.||
T Consensus 228 -~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 228 -LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred -cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCCCCCceeecCCCc
Confidence 223456789999998 568999999999999976542 2223334578 779999999995 56899999999
Q ss_pred eEEEEEee
Q 016257 311 GAMITKLT 318 (392)
Q Consensus 311 ~i~iw~~~ 318 (392)
.+++|.+.
T Consensus 304 ~v~~W~l~ 311 (312)
T KOG0645|consen 304 IVNFWELE 311 (312)
T ss_pred eEEEEEec
Confidence 99999875
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=226.95 Aligned_cols=261 Identities=12% Similarity=0.168 Sum_probs=215.5
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.+.|..+...|+... ++.++ ...|++|++... ++....++.+|...|+++.|..+|+++++|++
T Consensus 40 dsqVNrLeiTpdk~~---LAaa~-------~qhvRlyD~~S~------np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKD---LAAAG-------NQHVRLYDLNSN------NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred ccceeeEEEcCCcch---hhhcc-------CCeeEEEEccCC------CCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 456777888887743 44333 345889988754 44466789999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~ 162 (392)
||+++|||++...... .+++.++|+++..+|+...|++|..+|.|++||+.+..+...+.... ..|.++..
T Consensus 104 Dgt~kIWdlR~~~~qR--------~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQR--------NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred CceEEEEeccCcccch--------hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 9999999998855332 23467899999999999999999999999999999876655554443 48999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCC------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-e
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N 235 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~ 235 (392)
.|||.+++.+...|..++|++-.. +++.+++.|. ..+..+.+||++++ +++++.|.+++||+.+.. +
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcE-----EEeecCCceEEEEecCCcee
Confidence 999999999999999999998654 3444555554 47999999999998 899999999999999987 5
Q ss_pred eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (392)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 296 (392)
....+.+|...+...+||.||.||++|+.|+.+++||+..++.++.. .+| .....+++.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-~gh-~K~~vc~~l 308 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-QGH-HKAAVCVAL 308 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-CCc-ccccEEEEe
Confidence 55677888899999999999999999999999999999999988876 566 555555554
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=267.59 Aligned_cols=290 Identities=19% Similarity=0.220 Sum_probs=235.9
Q ss_pred EEEeeCC-CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 56 TYVFDES-EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 56 ~~~~~~h-~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
...+.+| ...|.++.|+|+|+.+++++.++.+++|+....+. ... .....|...|..++|+|+++++++++.|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~---~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLL---RELSGHTRGVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhh---ccccccccceeeeEECCCCcEEEEecCCc
Confidence 4445444 78999999999999999999999999999965552 011 11135888999999999999999999999
Q ss_pred cEEEEeC-CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257 135 HLRIMHW-PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (392)
Q Consensus 135 ~i~i~d~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (392)
+|++||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|.. .|.+++|++++..
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~-- 302 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNL-- 302 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCE--
Confidence 9999999 45578888889999999999999999999999999999999999999999988766 7999999999997
Q ss_pred EEEEEEeCCccEEEEEeCCCce--eeeeecccCC--CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257 214 LFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT 289 (392)
Q Consensus 214 ~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 289 (392)
+++++.|+.|++||+.++. +...+..+.. +++++.|+|+++++++++.|+.+++||+..++..... .+|...
T Consensus 303 ---l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~-~~~~~~ 378 (456)
T KOG0266|consen 303 ---LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY-TGHSNL 378 (456)
T ss_pred ---EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee-cccCCc
Confidence 7888999999999999998 4555555544 4999999999999999999999999999999888776 455243
Q ss_pred --ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee----eeeeeeeeeeceEEEEee--ecceeeeeccc
Q 016257 290 --SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----YSLLLALFLASAVVFYIF--FENSDSFWNFP 357 (392)
Q Consensus 290 --~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~d~~i~~W~~~ 357 (392)
.+.+...++.++++++|+.|+.|++|++........... .............+++.+ .|+.+++|...
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 555666788999999999999999999986544332211 112222233444555555 68899999864
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=249.69 Aligned_cols=275 Identities=13% Similarity=0.181 Sum_probs=229.8
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
....|+|+.+ |...+++|..|++|+|||..+..+...+. .|.+.|.|+.|. .+.|++|+.|.+|++||+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~-------GHtGSVLCLqyd--~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILT-------GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhh-------cCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence 3567999999 55689999999999999998877655544 488999999995 559999999999999999
Q ss_pred CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee--EEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
++++++..+..|...|..+.|+ +.++++++.|.++.+||+.....+ .....+|...|..+.|+.. + +++
T Consensus 265 ~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--y-----IVs 335 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y-----IVS 335 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--e-----EEE
Confidence 9999999999999999999998 569999999999999999865432 1222345567999988754 4 799
Q ss_pred eCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
++.|.+|++|++.+++.+..+.+|...|.|+.+ .|+++++|+.|.+|++||+..|.+++.+ .+| +.-|.++.| |
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-eGH-EeLvRciRF--d 409 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRCIRF--D 409 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH-hch-HHhhhheee--c
Confidence 999999999999999999999999999998886 5899999999999999999999999887 699 999999999 5
Q ss_pred CCeEEEEeCCCeEEEEEeecCccccce----------eeeeeeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257 300 QRVVLTASKEWGAMITKLTVPADWKEW----------QIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQ 362 (392)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~ 362 (392)
.+.+++|+.||+|++|++......+.- ...-....+.+..-.+++.+.|.+|-+||+-.+...
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 678999999999999999876544211 111133444556778888899999999999876543
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.3e-36 Score=240.21 Aligned_cols=285 Identities=13% Similarity=0.100 Sum_probs=248.8
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
-+-|+|+++.|-+ ..+++|+. |.+++||++. ...+..++.||-..|..+++|+--.||++++.
T Consensus 151 lgWVr~vavdP~n---~wf~tgs~------DrtikIwDla--------tg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 151 LGWVRSVAVDPGN---EWFATGSA------DRTIKIWDLA--------TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceEEEEeeCCCc---eeEEecCC------CceeEEEEcc--------cCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 3679999999987 56887777 6779999998 77888899999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
|+.|+.||++..+.+.... .|-+.|.+++..|.-+.|++|+.|.++++||+++...+..+.+|..+|..+.+.
T Consensus 214 dk~VKCwDLe~nkvIR~Yh-------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYH-------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred CCeeEEEechhhhhHHHhc-------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 9999999999988665544 377899999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~ 243 (392)
|....+++|+.|++|++||++.++...++..|.. .+++++.+|.... +++++ ...|+-|++..+..+..+.+|
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~-----fASas-~dnik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENL-----FASAS-PDNIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhh-----hhccC-CccceeccCCccchhhccccc
Confidence 9888999999999999999999999888876644 7999999999874 44444 456999999999999999999
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----cc--ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RL--HLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 317 (392)
...+.+++...|| ++++|+.+|.+.+||.+++...+... .+ ..+..|.+.+|...|..|++|..|.+|++|.-
T Consensus 360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 9999999998776 77889999999999999876544331 11 12567999999999999999999999999987
Q ss_pred ecC
Q 016257 318 TVP 320 (392)
Q Consensus 318 ~~~ 320 (392)
...
T Consensus 439 De~ 441 (460)
T KOG0285|consen 439 DEH 441 (460)
T ss_pred ccc
Confidence 644
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-35 Score=250.71 Aligned_cols=283 Identities=19% Similarity=0.257 Sum_probs=234.2
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (392)
.+++|.++|.+++|+|++++|++++.+|.+++|++.+.+...... .|...+..+.|+|+++++++++.+|.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-------GHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-------cCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 467899999999999999999999999999999998776333322 2566788999999999999999999999
Q ss_pred EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (392)
Q Consensus 138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (392)
+|++++++....+..+...+.++.|+++++++++++.|+.+++||+++++....+..+ ...+.+++|+|++.. +
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l 150 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTF-----V 150 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCcCCE-----E
Confidence 9999987777777777779999999999888888888999999999988888877744 447999999999774 5
Q ss_pred EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 297 (392)
++++.++.+.+||+++++.+..+..+...+.++.|+|+++.+++++.|+.|++||+++++....+ ..| ...+.++.|+
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~~ 228 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGH-ENGVNSVAFS 228 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-hhc-CCceEEEEEc
Confidence 66667999999999988888888888889999999999999999999999999999988877765 356 7799999999
Q ss_pred eCCCeEEEEeCCCeEEEEEeecCccccceee-eeeeeeeee--eceEEEEeeecceeeeec
Q 016257 298 PTQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLLLALFL--ASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~d~~i~~W~ 355 (392)
|++.++++++.||.+++|++........... ...+..... ....+++++.|+.+++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9988898888899999999985443322211 111122222 235777888999999996
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-36 Score=266.43 Aligned_cols=316 Identities=15% Similarity=0.196 Sum_probs=260.9
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+..|..++|+|..+. +++ +-..+.|++|++. ...+...|.+|.++|..++|+|++.++++|+.
T Consensus 9 SsRvKglsFHP~rPw--ILt-------slHsG~IQlWDYR--------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPW--ILT-------SLHSGVIQLWDYR--------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cccccceecCCCCCE--EEE-------eecCceeeeehhh--------hhhHHhhhhccCCccceeeecCCCCeEEecCC
Confidence 678999999997754 333 3346779999997 55666779999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
|-.|+||+.++.++..++.. |-..|+.+.|++.-.+|+++|.|-+|+||++.+.+++..+.+|..-|.|..|+
T Consensus 72 DykIkVWnYk~rrclftL~G-------HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLG-------HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred ccEEEEEecccceehhhhcc-------ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 99999999999988766654 78899999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCe----------------------------eeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGV----------------------------AWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
|....++++|-|.+|++||+..-+ .++.+..+|+..|.-++|+|.-..
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl---- 220 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL---- 220 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce----
Confidence 999999999999999999985211 122222344456999999998875
Q ss_pred EEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257 216 CTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
+++|++|..|++|.+..-+. +.+.++|.+.|+++-|+|...++++.++|++|++||+...+.++.+.+. ...-+.
T Consensus 221 -iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW~ 297 (1202)
T KOG0292|consen 221 -IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFWI 297 (1202)
T ss_pred -EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeEEE
Confidence 79999999999999876543 4567889999999999999999999999999999999999988887544 578899
Q ss_pred EEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257 294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQH 363 (392)
Q Consensus 294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~ 363 (392)
++-+|..+++++ +.|+.+.++.+....+ . .++..+.+++.- |..|+..|+.+.+..+
T Consensus 298 laahP~lNLfAA-gHDsGm~VFkleRErp--a---------~~v~~n~LfYvk-d~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 298 LAAHPELNLFAA-GHDSGMIVFKLERERP--A---------YAVNGNGLFYVK-DRFIRSYDLRTQKDTA 354 (1202)
T ss_pred EEecCCcceeee-ecCCceEEEEEcccCc--e---------EEEcCCEEEEEc-cceEEeeeccccccce
Confidence 999999886655 5677888988873322 1 123445566665 8889999988855443
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-36 Score=254.44 Aligned_cols=281 Identities=17% Similarity=0.230 Sum_probs=240.0
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~ 85 (392)
.|.++.|.|-.. .|+.+|+ -|+.|+||++-. ...+..++.+|..+|.+++|+++|..+++++.|+
T Consensus 216 gvsai~~fp~~~--hLlLS~g------mD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 216 GVSAIQWFPKKG--HLLLSGG------MDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred ccchhhhcccee--eEEEecC------CCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 588999999543 3555444 488899999864 3456678999999999999999999999999999
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 164 (392)
.+++||++++++...+.. ...+.|+.|.|++ +.+++|+.|+.|+.||+++++.+.++-.|-+.|..+.|-+
T Consensus 281 ~lKlwDtETG~~~~~f~~--------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL--------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred eeeeeccccceEEEEEec--------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence 999999999998777654 3467999999988 7899999999999999999999888888888999999999
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeec
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR 241 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~ 241 (392)
+|+++++++.|++++||+.+.+..+............++..+|++.. ++.-+.|+.|.+|.+...- ....++
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-----~~aQs~dN~i~ifs~~~~~r~nkkK~fe 427 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-----FAAQSMDNYIAIFSTVPPFRLNKKKRFE 427 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-----ehhhccCceEEEEecccccccCHhhhhc
Confidence 99999999999999999999888877766655556889999999997 7888889999999865322 223445
Q ss_pred ccC--CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEE
Q 016257 242 LLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITK 316 (392)
Q Consensus 242 ~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~ 316 (392)
+|. +.-..+.|||||.+|++|..||.+.+||.++-++...+ ..| .+++..+.|+|... .+|+++.||.|++|+
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-kah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-KAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-ccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 553 34567899999999999999999999999999988877 578 89999999999654 899999999999995
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-34 Score=278.77 Aligned_cols=288 Identities=16% Similarity=0.175 Sum_probs=225.4
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEE
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLR 137 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 137 (392)
+..|.+.|.+++|+|++++||+|+.|+.|+||++..................+...+.+++|++ ++.+|++++.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4558999999999999999999999999999997542110000000011122456789999987 578999999999999
Q ss_pred EEeCCCCceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-CCCcceEE
Q 016257 138 IMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-DGTKPFLF 215 (392)
Q Consensus 138 i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~ 215 (392)
+||+.+++.+..+..|.+.|++++|+| ++.+|++|+.|++|++||++++..+..+..+ ..+.++.|++ ++..
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~---- 632 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRS---- 632 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCE----
Confidence 999999988888888888999999997 7889999999999999999999888887643 3689999965 5665
Q ss_pred EEEEeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc------eeeeeeeccccC
Q 016257 216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLG 288 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~ 288 (392)
+++++.|+.|++||++..+ .+..+..|...|.++.|. ++.+|++++.|+.|++||+..+ +.+..+ .+| .
T Consensus 633 -latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh-~ 708 (793)
T PLN00181 633 -LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGH-T 708 (793)
T ss_pred -EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCC-C
Confidence 7899999999999998765 456677889999999997 7789999999999999999753 334444 578 8
Q ss_pred cceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee----------------eeeeeeeeeeeceEEEEeeecceee
Q 016257 289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ----------------IYSLLLALFLASAVVFYIFFENSDS 352 (392)
Q Consensus 289 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~~i~ 352 (392)
..+..++|+|++.+|++|+.|+.|++|+...+.....+. ..............+++++.||.|+
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 889999999999999999999999999976442211000 0011111122445778888999999
Q ss_pred eecc
Q 016257 353 FWNF 356 (392)
Q Consensus 353 ~W~~ 356 (392)
+|++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9985
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3e-36 Score=231.52 Aligned_cols=291 Identities=13% Similarity=0.169 Sum_probs=242.4
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.-||..++|+|-.+.-.++++++..+ .--+- +.+ +.....+|.||.+.|.....+.+...-|+++.
T Consensus 14 trpvvdl~~s~itp~g~flisa~kd~------~pmlr--~g~------tgdwigtfeghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 14 TRPVVDLAFSPITPDGYFLISASKDG------KPMLR--NGD------TGDWIGTFEGHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred CcceeEEeccCCCCCceEEEEeccCC------Cchhc--cCC------CCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence 34888899998543324555443321 11111 111 34456789999999999999988888899999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~ 162 (392)
|=+-++||.-++..+.. ++|..-|.+++|+.|.++|++|+.+..+||||++..+ +..++.+|.+.|..+.|
T Consensus 80 dftakvw~a~tgdelhs--------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHS--------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred cchhhhhhhhhhhhhhh--------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 99999999988874433 3577789999999999999999999999999997654 45667788889999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
....+.|++++.|++|++||.++++.++++...+ +|+++..+++|. +++-...+.|..||..+...++..+.
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~------ilTia~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGR------ILTIAYGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCC------EEEEecCceeEEeccccccceeeccC
Confidence 9988899999999999999999999999998654 699999999999 47777788999999999888877664
Q ss_pred cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
...|.+.+++|+...+++|++|..++.||..+++.+.....+| .++|.++.|+|+|...++|+.||+|++|.+...+.
T Consensus 224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 6689999999999999999999999999999999888766788 99999999999999999999999999999987665
Q ss_pred ccce
Q 016257 323 WKEW 326 (392)
Q Consensus 323 ~~~~ 326 (392)
+..|
T Consensus 302 ~~~~ 305 (334)
T KOG0278|consen 302 YGLW 305 (334)
T ss_pred hhhc
Confidence 5444
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.1e-34 Score=277.74 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=225.4
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~ 82 (392)
.++|.+++|+|++. ++++|+. ++.|++|++................+. +...+.+++|+| ++.+|++++
T Consensus 483 ~~~V~~i~fs~dg~---~latgg~------D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 483 SNLVCAIGFDRDGE---FFATAGV------NKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred CCcEEEEEECCCCC---EEEEEeC------CCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence 56799999999984 5665554 777999987532111000111122333 346899999987 478999999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 161 (392)
.||+|++||+.+++....+. .|.+.|.+++|+| ++.+|++|+.|++|++||++++..+..+. ++..+.++.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~-------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v~ 624 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMK-------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQ 624 (793)
T ss_pred CCCeEEEEECCCCeEEEEec-------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEEE
Confidence 99999999998776443332 3778999999997 78999999999999999999888776554 346799999
Q ss_pred ec-CCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-----
Q 016257 162 FS-LDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----- 234 (392)
Q Consensus 162 ~~-~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----- 234 (392)
|+ +++.+|++|+.|+.|++||+++.+ ....+..| ...|.++.|. ++.. +++++.|+.|++||++..
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCccccC
Confidence 95 478999999999999999998765 45555544 4579999997 4554 789999999999999743
Q ss_pred -eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee------------ccccCcceEEEEEeeCCC
Q 016257 235 -NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------------RLHLGTSIALVEFCPTQR 301 (392)
Q Consensus 235 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~i~~~~~s~~~~ 301 (392)
+++..+.+|...+.+++|+|++.+|++|+.|+.|++|+........... ..+ ...|.+++|+|++.
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~~~~ 776 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRGQSS 776 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcCCCC
Confidence 4567788888999999999999999999999999999987654322110 123 45799999999999
Q ss_pred eEEEEeCCCeEEEEEe
Q 016257 302 VVLTASKEWGAMITKL 317 (392)
Q Consensus 302 ~l~~~~~dg~i~iw~~ 317 (392)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999986
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-35 Score=241.64 Aligned_cols=287 Identities=13% Similarity=0.118 Sum_probs=235.2
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|.-+.|++++++ +|+++. |.+.-+|....+.. -.+..++.+|..+|..+.||||.++|++++.
T Consensus 224 tdEVWfl~FS~nGky---LAsaSk------D~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKY---LASASK------DSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred CCcEEEEEEcCCCee---EeeccC------CceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 346888999999954 776555 66678999886653 3456789999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~ 162 (392)
+..+.+||+.++.....+.. .+...+.+++|.|||..+++|+.|+.+..||++... .....+-. ..|.+++.
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPS------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAI 362 (519)
T ss_pred hHheeeccCCcchhhhhccc------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEE
Confidence 99999999999986544322 135688999999999999999999999999986533 22333322 36999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
++||+++++.+.|..|++++.++......+..+ .++++...+.++++ +++.-.+..+.+||++..+.+..+.+
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~-----~LvnL~~qei~LWDl~e~~lv~kY~G 435 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKL-----ALVNLQDQEIHLWDLEENKLVRKYFG 435 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcE-----EEEEcccCeeEEeecchhhHHHHhhc
Confidence 999999999999999999999877666555433 37999999999997 67777889999999998888888888
Q ss_pred cCCCcEE--EEEC-CCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257 243 LRKPASV--LSIS-LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT 318 (392)
Q Consensus 243 ~~~~v~~--~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 318 (392)
|...-.- -+|- .+..++++|++|++|+||+..+++++..+ .+| ...|++++|+|... ++|++|+||+||||...
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cCC-cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 7654322 2343 35589999999999999999999999888 699 99999999999655 89999999999999876
Q ss_pred cC
Q 016257 319 VP 320 (392)
Q Consensus 319 ~~ 320 (392)
..
T Consensus 514 ~~ 515 (519)
T KOG0293|consen 514 DN 515 (519)
T ss_pred cc
Confidence 43
No 41
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.6e-36 Score=252.06 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=237.8
Q ss_pred CCceEEEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeC-CccceeeccccCCCCCCCCCeEEEEecCCCCEEEE
Q 016257 52 SPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA 129 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 129 (392)
+....+.+.||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++..+. .|..+|.+++|+++|..+++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-------gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-------GHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-------cchhhhhhhhccccCCeeee
Confidence 3456678999999999999999 888999999999999999987 44443333 48899999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257 130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (392)
Q Consensus 130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (392)
++.|+.+++||+++|++...+.. ...++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..+.+ .|..+.|-++
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~ 353 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDE 353 (503)
T ss_pred eecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccC
Confidence 99999999999999999866543 3478999999988 7899999999999999999998888776654 7999999999
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee--eeecc
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRL 285 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~ 285 (392)
+.+ .+++++|+.+++|+.+..-+++... .......++..+|++++++.=+.|+.|.+|.+...-... ....+
T Consensus 354 g~r-----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 354 GRR-----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred Cce-----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence 998 8999999999999999876654433 234567789999999999999999999999875432211 12244
Q ss_pred cc-CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee----eeeeeeeeeeceEEEEeeecceeeeec
Q 016257 286 HL-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----YSLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 286 ~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
|. .+.-..+.|||||++|++|+.||.+.+||.++.+....++. .....-+......+++++.||.|++|+
T Consensus 429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 52 45567899999999999999999999999997766554432 233344455677889999999999996
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-33 Score=236.98 Aligned_cols=294 Identities=17% Similarity=0.179 Sum_probs=241.0
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
.+.....+.+|..+++-..|+|.|.++|+|...|.|+|||....+...+...+. -.++|..++|+.|++.|++.+
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v-----~aG~I~Di~Wd~ds~RI~avG 122 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV-----LAGPIKDISWDFDSKRIAAVG 122 (603)
T ss_pred CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeee-----cccccccceeCCCCcEEEEEe
Confidence 455566788999999999999999999999999999999987754332222111 358999999999999998876
Q ss_pred C--CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257 132 V--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (392)
Q Consensus 132 ~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (392)
+ +...+++-.+++..+.++.+|...|.+++|-|... .+++|++|++|.+|+=.--+...++..|+. -|+++.|+||
T Consensus 123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRysPD 201 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRYSPD 201 (603)
T ss_pred cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEECCC
Confidence 4 23344444557888888899999999999999765 599999999999998766666667766665 7999999999
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCceeeeeec---ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee---
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--- 282 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--- 282 (392)
|.. +++.+.|+++.+||-.+++.+..+. .|.+.|.+++|+||+..+++++.|.+++|||+.+.++.+.+
T Consensus 202 G~~-----Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 202 GSR-----FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCe-----EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 997 8999999999999999999998887 89999999999999999999999999999999887655443
Q ss_pred ---------------------------------------eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257 283 ---------------------------------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW 323 (392)
Q Consensus 283 ---------------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 323 (392)
..+| ...|+++..+|++++|++|+.||.|.-|+...+..-
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 3467 789999999999999999999999999999877655
Q ss_pred cce--eeeeeeeeeeeec-eEEEEeeecceeeeeccc
Q 016257 324 KEW--QIYSLLLALFLAS-AVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 324 ~~~--~~~~~~~~~~~~~-~~~~~~~~d~~i~~W~~~ 357 (392)
+.. ...-.+.++...+ ..+++.++|.++++-++.
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 432 1222333444444 788999999999999774
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=252.78 Aligned_cols=287 Identities=16% Similarity=0.185 Sum_probs=238.8
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+..|.+|+|-.+..+...||+- ...+++|... ...+. .+.||++.|.++....+|.+|++|+.
T Consensus 323 ndEI~Dm~~lG~e~~~laVATN--------s~~lr~y~~~--------~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATN--------SPELRLYTLP--------TSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred chhheeeeecCCccceEEEEeC--------CCceEEEecC--------CCceE-EEeCchhheeeeeecccCcEEEEecC
Confidence 4578888876544442334432 3347788543 22222 68999999999997678889999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCce-----ee----cccCC
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRI-----IL----DEPKA 153 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~-----~~----~~~~~ 153 (392)
|.++++|.++++....... .....|...|.+++++..+ ..|++++.|+++++|++...+. .. ....|
T Consensus 386 D~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred CceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 9999999995544322222 1223588999999998744 5889999999999999975221 11 23456
Q ss_pred CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
.+.|++++.+|+.+++++||.|++.++|+++......++.+|.. .+.++.|+|..+. +++++.|.+|+||.+.+
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQL-----LATCSGDKTVKIWSIST 536 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccce-----eEeccCCceEEEEEecc
Confidence 67999999999999999999999999999998889999988876 6999999999886 89999999999999999
Q ss_pred ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (392)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 313 (392)
..+++++.+|...|..+.|-.+|+.|++++.||.|++|+++++++...+ ..| ...|++++-+|...++++|+.||.|.
T Consensus 537 fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~ 614 (775)
T KOG0319|consen 537 FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAH-NDRVWALSVSPLLDMFVTGGGDGRII 614 (775)
T ss_pred ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhc-cceeEEEeecCccceeEecCCCeEEE
Confidence 9999999999999999999999999999999999999999999999988 689 99999999999999999999999999
Q ss_pred EEEee
Q 016257 314 ITKLT 318 (392)
Q Consensus 314 iw~~~ 318 (392)
+|.=.
T Consensus 615 ~wkD~ 619 (775)
T KOG0319|consen 615 FWKDV 619 (775)
T ss_pred EeecC
Confidence 99654
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=247.28 Aligned_cols=281 Identities=12% Similarity=0.141 Sum_probs=246.1
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+-+|.|+.++|..+. +++ +-..+.++||+++ +..+...+.-..-+|.+..|-+..+++++|+.
T Consensus 13 SdRVKsVd~HPtePw--~la-------~LynG~V~IWnye--------tqtmVksfeV~~~PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPW--ILA-------ALYNGDVQIWNYE--------TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred CCceeeeecCCCCce--EEE-------eeecCeeEEEecc--------cceeeeeeeecccchhhheeeeccceEEEecC
Confidence 568999999998765 333 2346679999998 55566667777889999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeecccCCCCcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~ 162 (392)
|..|+||+..+.+....+.. |...|++++.+|...++++++.|-+|++||.+.. .+.+.+.+|..-|.+++|
T Consensus 76 D~~IrVfnynt~ekV~~FeA-------H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVKTFEA-------HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred CceEEEEecccceeeEEeec-------cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 99999999999987766654 7899999999999999999999999999999765 455667777779999999
Q ss_pred cC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (392)
Q Consensus 163 ~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 241 (392)
+| |.+.+++++-|++|++|.+.+..+..++.+|.. .|.++.+-+.|...+ ++++++|..++|||..+..+++++.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TLe 224 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTLE 224 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHhh
Confidence 99 778999999999999999999999999997765 699999999887665 7999999999999999999999999
Q ss_pred ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
+|...|..+.|+|.-.++++|++||+++||+..+.+....+.-+ ...+++++-.+.+..++.|.++|.|.+
T Consensus 225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999999999999998877766322 678999999998888999988877754
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=249.48 Aligned_cols=329 Identities=14% Similarity=0.137 Sum_probs=267.4
Q ss_pred CCCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCc-cccCCceEEEeeCCCCCeeEEEEcCCCCeEE
Q 016257 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (392)
Q Consensus 1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 79 (392)
|....+|.++.|-|.+.....+++ -.+|.++.|.++..... ..........+.||...|.++++|.+...++
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~-------l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVL-------LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred eechhheeEEEEEecCCcceeEEE-------eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee
Confidence 345678999999997654333442 24788999999873322 2223345567889999999999999887777
Q ss_pred EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEE
Q 016257 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (392)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 159 (392)
+|+ .+.++||+..+.++..++.. +.+.+..|-|.++++++|...|.+.+||+.+...+.....|.+.|.+
T Consensus 390 Sga-~~SikiWn~~t~kciRTi~~---------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWs 459 (888)
T KOG0306|consen 390 SGA-GESIKIWNRDTLKCIRTITC---------GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWS 459 (888)
T ss_pred ecC-CCcEEEEEccCcceeEEecc---------ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceee
Confidence 765 45599999999988776643 47899999999999999999999999999999888888888899999
Q ss_pred EEecCCCCeEEEEcCCCcEEEEECCC-----CeeeEEEec------CCCcceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257 160 MDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (392)
Q Consensus 160 i~~~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v 228 (392)
++.+||++.+++|+.|.+|++||..- +...+.+.. .-...|.|+.+|||+++ ++.+--|++++|
T Consensus 460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkV 534 (888)
T KOG0306|consen 460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKV 534 (888)
T ss_pred eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEE
Confidence 99999999999999999999999742 111111111 12346999999999997 788888999999
Q ss_pred EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (392)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 308 (392)
|-+++.+....+.+|.-||.|+.+|||++.++||+.|.+|++|-++-|.+.+.+ .+| ...|.++.|-|+..++.++|.
T Consensus 535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAH-dDSvm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAH-DDSVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcc-cCceeEEEEcccceeEEEecC
Confidence 999999999999999999999999999999999999999999999999988877 588 899999999999999999999
Q ss_pred CCeEEEEEeecCc--------cccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257 309 EWGAMITKLTVPA--------DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV 358 (392)
Q Consensus 309 dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~ 358 (392)
|+.|+-||-..-. ...+|.+...+.+ ..+++++.|..||+|.-..
T Consensus 613 D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-----~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 613 DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-----SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cceEEeechhhhhhheeeccchheeeeeEEcCCC-----CeEEeccCCceeEeeeccC
Confidence 9999999765322 2234555444443 4677788899999998654
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=230.31 Aligned_cols=306 Identities=15% Similarity=0.200 Sum_probs=248.0
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
....|..|+++|.+++.+|+.++++||+.|..-.+|+..++.....+. .|...|.++.||.||.+||+|..+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-------gHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-------GHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-------CCCCceEEEEEccCceEEEecCCCc
Confidence 456789999999999999999999999999999999999988544433 4889999999999999999999999
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
.|+||...++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+| ..++++=.|.|+|++
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdGKr--- 204 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDGKR--- 204 (399)
T ss_pred cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCCce---
Confidence 9999999999887777656668889999999999999999999999999987777777765 558999999999998
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeeccc-CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-------cc
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-------LH 286 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~ 286 (392)
++++..|++|++||..++.++..+... .....++.++..+..++.|+.++.+++-+..+++.+..... .+
T Consensus 205 --~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 205 --ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred --EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 899999999999999999988766532 44677899999999999999999999999999887765431 22
Q ss_pred --cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee-eeeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257 287 --LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLLLALFLASAVVFYIFFENSDSFWNFPVARNQH 363 (392)
Q Consensus 287 --~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~ 363 (392)
....|..+.|+..=.+.|+|+.||+|.|||+........... .......+..+..+++++.+|.||.||..+|+...
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence 123344455555666889999999999999986554433322 22334445557788899999999999999998654
Q ss_pred C-CCCcccccC
Q 016257 364 G-GPKIESILR 373 (392)
Q Consensus 364 ~-~p~~~~~~~ 373 (392)
. .-+..+|+.
T Consensus 363 ~y~GH~~~Il~ 373 (399)
T KOG0296|consen 363 TYTGHQMGILD 373 (399)
T ss_pred EEecCchheeE
Confidence 3 234444443
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=214.89 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=213.8
Q ss_pred EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (392)
Q Consensus 57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (392)
..+..|+++|.++.|+-+|++.++++.|.+|++|+...+..+.+... |...|..++.+.|+..|++++.|..+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------hG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------HGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------CCceeeeccccccccccccCCCCceE
Confidence 45788999999999999999999999999999999988876665543 67789999999999999999999999
Q ss_pred EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
.+||+.+|+..+++.+|..+|+.+.|+.+...+++|+-|.++++||.++. ++++.+....+ .|.++..+...
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~~he----- 157 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVAEHE----- 157 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEecccE-----
Confidence 99999999999999999999999999999999999999999999999864 56676655444 68888776542
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc--eE
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS--IA 292 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--i~ 292 (392)
+++++.||+++.||++.++...-. ...+|+++.|++|++..+.++-|+++++.|-.+|+++..+ .+| ... -.
T Consensus 158 --IvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-kGh-kn~eykl 231 (307)
T KOG0316|consen 158 --IVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-KGH-KNMEYKL 231 (307)
T ss_pred --EEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh-ccc-ccceeee
Confidence 799999999999999998865433 4579999999999999999999999999999999998877 567 332 34
Q ss_pred EEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 293 LVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
..+++....++++|++||.+.+|++.....
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEecccee
Confidence 556777778999999999999999976543
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.1e-35 Score=234.15 Aligned_cols=273 Identities=14% Similarity=0.176 Sum_probs=226.1
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
...|+|+....+ .+++|.. |++|++|+.+ ...+...+.||++.|.|+.|. .+.+++|+.
T Consensus 197 skgVYClQYDD~-----kiVSGlr------DnTikiWD~n--------~~~c~~~L~GHtGSVLCLqyd--~rviisGSS 255 (499)
T KOG0281|consen 197 SKGVYCLQYDDE-----KIVSGLR------DNTIKIWDKN--------SLECLKILTGHTGSVLCLQYD--ERVIVSGSS 255 (499)
T ss_pred CCceEEEEecch-----hhhcccc------cCceEEeccc--------cHHHHHhhhcCCCcEEeeecc--ceEEEecCC
Confidence 456899988653 3665555 8889999876 556667799999999999994 569999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eecccCCCCcEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLDM 160 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i 160 (392)
|.+|+|||+++++....+. .|...|..+.|+. .++++++.|.++.+||+..... ...+.+|...|..+
T Consensus 256 DsTvrvWDv~tge~l~tli-------hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLI-------HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred CceEEEEeccCCchhhHHh-------hhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 9999999999998765544 3778999999973 4999999999999999976542 33456777899999
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 240 (392)
.|+ .+++++++.|.+|++|++.+.+.++++.+|.. .|.|+.+. ++. +++|+.|.+|++||+..|.++..+
T Consensus 327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rl-----vVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ccc--cceEEEecCCceEEEEeccceeeehhhhcccc-cceehhcc--CeE-----EEecCCCceEEEEeccccHHHHHH
Confidence 997 56999999999999999999999999988766 47666653 443 799999999999999999999999
Q ss_pred cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--------eccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--------KRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
.+|..-|.++.|. .+.+++|+.||+|++||+.++...+.. ...| .+.|..+.| |...+++++.|.+|
T Consensus 397 eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssHddtI 471 (499)
T KOG0281|consen 397 EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSHDDTI 471 (499)
T ss_pred hchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccCCCeE
Confidence 9999999999994 678999999999999999876543211 1346 788999999 56789999999999
Q ss_pred EEEEeecCc
Q 016257 313 MITKLTVPA 321 (392)
Q Consensus 313 ~iw~~~~~~ 321 (392)
.||++....
T Consensus 472 LiWdFl~~~ 480 (499)
T KOG0281|consen 472 LIWDFLNGP 480 (499)
T ss_pred EEEEcCCCC
Confidence 999997543
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=242.89 Aligned_cols=248 Identities=13% Similarity=0.164 Sum_probs=223.8
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (392)
++..|+..|.++.|||...+++++-.+|.|.|||.++......+... .-+|++..|-+..+++++|+.|..|+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~-------~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-------EVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-------ccchhhheeeeccceEEEecCCceEE
Confidence 35558899999999999999999999999999999998766665442 35889999999999999999999999
Q ss_pred EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (392)
Q Consensus 138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (392)
+|+..+++.+..+..|.+-|.+++.+|...+++++|.|-+|++||-+.. .+.+++.+| ...|.+++|+|.....
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~nt---- 155 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNT---- 155 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccc----
Confidence 9999999999999999999999999999999999999999999999876 455666665 4589999999976653
Q ss_pred EEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC--CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEE
Q 016257 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV 294 (392)
Q Consensus 217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~ 294 (392)
+++++-|++|++|.+.+..+..++.+|...|+|+.+-+-| .+|++|+.|.+|+|||.++..+++.+ .+| ...|+.+
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGH-t~Nvs~v 233 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGH-TNNVSFV 233 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcc-cccceEE
Confidence 6899999999999999999999999999999999998754 79999999999999999999999988 689 9999999
Q ss_pred EEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 295 EFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 295 ~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
.|+|.-.++++|++||+++||.-.+
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcc
Confidence 9999999999999999999998764
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-34 Score=233.30 Aligned_cols=292 Identities=14% Similarity=0.097 Sum_probs=227.8
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (392)
...+.+..|.+.|.-+.||++|++||+++.|.+..+|++..... .++. .....|..+|..+.||||.++|++++.|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~---~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLK---KTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeee---eeeecccCceEEEEECCCCCeEEecCch
Confidence 34456889999999999999999999999999999999976654 1111 1223588999999999999999999999
Q ss_pred CcEEEEeCCCCceeecccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257 134 GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (392)
Q Consensus 134 g~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (392)
..+.+||+.+|.....+.... ..+.+++|.|||..+++|+.|+++..||+. ++.+..++......|.+++.++||++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~- 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY- 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE-
Confidence 999999999999876665553 479999999999999999999999999995 55566666655567999999999998
Q ss_pred eEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccC-cce
Q 016257 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG-TSI 291 (392)
Q Consensus 213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i 291 (392)
+++...|..|++|+.++...+.. .....+++++++|.|++++.+--.+..+++||++..+.++.+ .+|.. .-+
T Consensus 369 ----vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY-~Ghkq~~fi 442 (519)
T KOG0293|consen 369 ----VLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY-FGHKQGHFI 442 (519)
T ss_pred ----EEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh-hcccccceE
Confidence 56666899999999987555433 334678999999999999999999999999999987777666 46622 223
Q ss_pred EEEEEee-CCCeEEEEeCCCeEEEEEeecCccccceee-eeee---eeeeeeceEEEEeeecceeeeeccc
Q 016257 292 ALVEFCP-TQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLL---LALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 292 ~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
-.-+|.- +..++++|++|+.|+||+...+....+..- .... ..........++++.||+||+|-..
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 3344543 457999999999999999887655433210 0001 1111234467778889999999865
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=250.89 Aligned_cols=285 Identities=15% Similarity=0.181 Sum_probs=242.2
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 138 (392)
|+..+..|..++|+|...+++++-.+|.|++||.+-+....++. +|.++|+.+.|+|++.++++|+.|-+|++
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-------ccCCccceeeecCCCCeEEecCCccEEEE
Confidence 45557889999999999999999999999999998877655554 48999999999999999999999999999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
|+.++.+++.++.+|-+-|..+.|++.-.+|+++|.|.+|+||+.++++++..+.+|.. .|.|..|+|.... ++
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDl-----IV 151 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDL-----IV 151 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccce-----EE
Confidence 99999999999999999999999999999999999999999999999999999988755 7999999998876 89
Q ss_pred EeCCccEEEEEeCCCce-----------------------------eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257 219 QRGDKALLAVYDISTWN-----------------------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
+++-|.+|++||+...+ ....+.+|+..|+-++|+|.-.++++|+.|..|+
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 99999999999985311 1234568889999999999999999999999999
Q ss_pred EEecCCceee-eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeeeeeeeceEEEEe
Q 016257 270 VVDVKKMEIN-HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLALFLASAVVFYI 345 (392)
Q Consensus 270 iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 345 (392)
+|.+...+.- .....+| ...|+++-|+|...++++.|+|++|++||+...+....+.- .+-+.. .....-++.+
T Consensus 232 lWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la-ahP~lNLfAA 309 (1202)
T KOG0292|consen 232 LWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA-AHPELNLFAA 309 (1202)
T ss_pred EEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEE-ecCCcceeee
Confidence 9998765532 2234789 99999999999999999999999999999998776654411 111111 1234467788
Q ss_pred eecceeeeecccc
Q 016257 346 FFENSDSFWNFPV 358 (392)
Q Consensus 346 ~~d~~i~~W~~~~ 358 (392)
++|+-+.++.++.
T Consensus 310 gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 310 GHDSGMIVFKLER 322 (1202)
T ss_pred ecCCceEEEEEcc
Confidence 8899888888763
No 52
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.1e-33 Score=254.42 Aligned_cols=307 Identities=15% Similarity=0.144 Sum_probs=244.5
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc---cc-CCceEEEeeCCCCCeeEEEEcCCCCeEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV---YT-SPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~---~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 79 (392)
+.+|+++.-+|++. .+++|+.. .|+.+.||+.++-.... .. -+....+...|.+.|+|+.|+|||++||
T Consensus 13 ~~~IfSIdv~pdg~---~~aTgGq~----~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGV---KFATGGQV----LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred CeeEEEEEecCCce---eEecCCcc----ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 45799999999994 47777743 36667799987533211 11 2445556778999999999999999999
Q ss_pred EEeCCCeEEEEEEeCCcc-----------ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257 80 CSTTNGGCKLFEVYGGAT-----------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (392)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 148 (392)
+|++|+.|.||+...... ..+..........|...|..++|+|++.+|++++.|++|.+|+..+.+.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 999999999999884100 000000111123488999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC-----cceEEEEecCCCCcceEEEEEEeCCc
Q 016257 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK 223 (392)
Q Consensus 149 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (392)
.+.+|+..|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+.+ ..+..+.|+|||.++... -+..+..
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~-nA~n~~~ 244 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP-NAVNGGK 244 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch-hhccCCc
Confidence 9999999999999999999999999999999999877656666554332 357889999999973211 1233455
Q ss_pred cEEEEEeCCCceeeeeecccCCCcEEEEECCC-----CC------------EEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GK------------YLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 286 (392)
..+.|.+..+.+.-..+-+|..++.++.|+|. .+ .+|+|+.|++|.||.....+++..+....
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 68999999988888889999999999999972 12 68899999999999998888777665555
Q ss_pred cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
...|.+++|+|||..|+++|.||+|.+..+..
T Consensus 325 -~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 325 -NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred -cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 78999999999999999999999999999874
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-33 Score=231.63 Aligned_cols=281 Identities=17% Similarity=0.200 Sum_probs=226.7
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+|.+++|+|..++ .++++++.+ +++|... .......+......|+++.|..||++||+|..
T Consensus 26 ~~~vssl~fsp~~P~-d~aVt~S~r--------vqly~~~--------~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPY-DFAVTSSVR--------VQLYSSV--------TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred cCcceeEecCCCCCC-ceEEecccE--------EEEEecc--------hhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence 568999999997776 566655553 5677654 22222334445788999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.|.|+|||.++......+. .|..++..+.|+| ++..+++|+.|+.+++||+.+......+.+|.+.|.+.+|
T Consensus 89 sG~V~vfD~k~r~iLR~~~-------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLY-------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred cCcEEEeccccHHHHHHHh-------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 9999999965533222222 3788999999999 5567788888999999999988876678889999999999
Q ss_pred cCCC-CeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeee
Q 016257 163 SLDS-EFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH 239 (392)
Q Consensus 163 ~~~~-~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~ 239 (392)
+|.. ..+++|+.||+|++||++.. ..+.++ .++.+|..+.+-|.|.. +.......+++||+-++. .+..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~------iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSL------IASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCE------EEEcCCCeEEEEEecCCceehhh
Confidence 9954 58999999999999999987 444444 46678999999999985 444456789999999554 4455
Q ss_pred ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
+..|...|+|+.+..++..|++|+-|+.+++||+.+.+.+....- .++|.+++.+|+++.++.|..||.+.+-+...
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 555999999999999999999999999999999998888877632 78999999999999999999999998875543
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=227.25 Aligned_cols=289 Identities=13% Similarity=0.182 Sum_probs=242.8
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~ 85 (392)
-+-|..|+||++ ++++|+. |+-|++|++-...-...-..+..-.|--|..+|.|+.|+.|...||+|+.||
T Consensus 215 h~EcA~FSPDgq---yLvsgSv------DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 215 HVECARFSPDGQ---YLVSGSV------DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred chhheeeCCCCc---eEeeccc------cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 467899999994 5776655 7779999996432211112222334555789999999999999999999999
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 165 (392)
.|++|.+.++.+..++.. .|...|+|+.||.|+..+++++.|.++++.-+++|+++..+.+|..-|+...|.+|
T Consensus 286 kIKvWri~tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred cEEEEEEecchHHHHhhh------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 999999999998877654 27789999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEECCCCeeeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--
Q 016257 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-- 242 (392)
Q Consensus 166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-- 242 (392)
|..+++++.||+|++|+..+.+++.++... .+.+|..+..-|.+..- ++.+...+++++.++.. +.++.+..
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh----~iVCNrsntv~imn~qG-QvVrsfsSGk 434 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH----FIVCNRSNTVYIMNMQG-QVVRSFSSGK 434 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce----EEEEcCCCeEEEEeccc-eEEeeeccCC
Confidence 999999999999999999999999988653 34578888888866432 57788889999999874 55555432
Q ss_pred -cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 243 -LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 243 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
..+..-+...||.|.++++.++|+.++.|...+|++...+ ..| +..+-.++-+|..+.|++-++||.+++|.
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecc-cccccccccCcccchhhhhcccchhhhcC
Confidence 2355667789999999999999999999999999998877 578 88899999999999999999999999995
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-32 Score=207.82 Aligned_cols=277 Identities=16% Similarity=0.190 Sum_probs=231.9
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~ 82 (392)
..++|..+.|+.++.+ .++ .|.+.++++|+-. ...+..+..+|...|..++.+.|...+++|+
T Consensus 16 ~qgaV~avryN~dGnY--~lt-------cGsdrtvrLWNp~--------rg~liktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNY--CLT-------CGSDRTVRLWNPL--------RGALIKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred cccceEEEEEccCCCE--EEE-------cCCCceEEeeccc--------ccceeeeecCCCceeeeccccccccccccCC
Confidence 4689999999999965 344 3457779999765 5667788999999999999999999999999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--ceeecccCCCCcEEEE
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM 160 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~i 160 (392)
.|..+.+||+.+++...++.. |.+.|+.++|+.+...+++|+.|.++++||-++. ++++.+......|.++
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rg-------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRG-------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CCceEEEEEcccCeeeeeccc-------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 999999999999997766653 7889999999999999999999999999998754 5666666677789999
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 240 (392)
... +..|++|+.||+++.||++.++...... ..+|+++.|+++++. .+.++-++++++.|-.+++.++..
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-----~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-----SLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-----EEEeeccceeeecccchhHHHHHh
Confidence 887 5679999999999999999997765554 348999999999996 788999999999999999999999
Q ss_pred cccCCCcEE--EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc-eEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 241 RLLRKPASV--LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 241 ~~~~~~v~~--~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
++|...-.. .+++....++++|++||.|++||+.....+..+. .+ ... |.+++++|.-..++++... .+..|.
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~-~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VV-STVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cC-CceeEEeeecccCccceeEecCC-ceecee
Confidence 998765433 4556667899999999999999999988887763 44 444 8999999987777776544 455554
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.4e-32 Score=209.01 Aligned_cols=273 Identities=16% Similarity=0.217 Sum_probs=232.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~ 82 (392)
.++|.+++|+-++.+ ++.|+. +.++.+|+++.. .........+|.+.|..++|+| +.+.+++++
T Consensus 20 ~~~v~Sv~wn~~g~~---lasgs~------dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~atas 84 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTK---LASGSF------DKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATAS 84 (313)
T ss_pred hhcceEEEEcccCce---eeeccc------CCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEec
Confidence 468999999999966 555444 677999999865 2223345678999999999998 456899999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.|.+|++||....++...... .+.-..+.|+|+|+++++++.|..|...|.++.+..... .....+..++|
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~--------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w 155 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIET--------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISW 155 (313)
T ss_pred CCceEEEEEeccCcEEEEeec--------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeee
Confidence 999999999999987665543 234467899999999999999999999999987766433 33346888999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
+.++.+++.....|+|.|.....-+++..+..|.. ...|+.|+|+|++ +++|+.|..+.+||+...-+.+.+..
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~isR 229 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCISR 229 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCCce-----EeeccccceeeccChhHhhhheeecc
Confidence 98888877777789999999999999999988764 6889999999998 89999999999999999888889999
Q ss_pred cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
++-+|+.+.||.||++||++++|..|-|=++++|..+..+. + .++...++|+|...+||.++.|
T Consensus 230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~-~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--C-EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--c-cCCceeEEecCCCceeeEEecC
Confidence 99999999999999999999999999999999999888763 3 7899999999999999988876
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.7e-33 Score=218.96 Aligned_cols=295 Identities=14% Similarity=0.242 Sum_probs=241.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcC------CC----CccccCCceEEEeeCCCCCeeEEEEcC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP------KT----TSVYTSPLVTYVFDESEGDPMTIAVNP 73 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~------~~----~~~~~~~~~~~~~~~h~~~v~~~~~sp 73 (392)
.+|.++.+|+||+ .|+++|+. |..|+|++.+. .. .......-...+|-.|.+.|+++.|+|
T Consensus 112 K~~cR~aafs~DG---~lvATGsa------D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 112 KSPCRAAAFSPDG---SLVATGSA------DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ccceeeeeeCCCC---cEEEccCC------cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 4789999999999 78998777 66799998861 10 011112234567788999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--- 150 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--- 150 (392)
....|++|+.|++|++||+....... ..+.++...+|.++.|+|.|.+|++|..-.++++||+++.++...-
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKr-----A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKR-----AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHH-----HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 99999999999999999997654322 2233445679999999999999999999999999999998875433
Q ss_pred cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 151 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
..|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. |.+..|.+..|..++++ +++++.|..+++|
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~vkLW 332 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDSTVKLW 332 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcceeeee
Confidence 34556899999999999999999999999999999999988865 44567999999999998 8999999999999
Q ss_pred eCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257 230 DISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (392)
Q Consensus 230 d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 303 (392)
.+.+++.+....+.. .--+...|.....|++.-.+ .+.+.-||.++.........+| .+.+..+.-||.+..+
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVEPAF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCCCce
Confidence 999999988776542 11234567777777766543 4679999999999888888899 9999999999999999
Q ss_pred EEEeCCCeEEEEEee
Q 016257 304 LTASKEWGAMITKLT 318 (392)
Q Consensus 304 ~~~~~dg~i~iw~~~ 318 (392)
++++.|-.+++|.-+
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 999999999999754
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3e-32 Score=210.83 Aligned_cols=251 Identities=12% Similarity=0.126 Sum_probs=214.7
Q ss_pred EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCc
Q 016257 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH 135 (392)
Q Consensus 57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 135 (392)
..+++|...|.+++|+-+|..|++|+.|+++.+|+++....... .....|.+.|-.++|+| ....+++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-----~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-----LVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-----hcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 56788999999999999999999999999999999987743322 22335788999999998 6779999999999
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
|++||++.++++.......+.| .+.|+|+|++++.++.|..|...|.++.+.....+... .+..+.|+.++..
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~---- 161 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDL---- 161 (313)
T ss_pred EEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc--eeeeeeecCCCCE----
Confidence 9999999999987766555555 47899999999999999999999999888777665433 5788899966664
Q ss_pred EEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 295 (392)
++.....|.|.|......+++..++.|.....|+.|+|+|++||+|+.|..+.+||++..-+.+.+. .+ .-+|..++
T Consensus 162 -Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-Rl-dwpVRTlS 238 (313)
T KOG1407|consen 162 -FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RL-DWPVRTLS 238 (313)
T ss_pred -EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cc-cCceEEEE
Confidence 3445556899999999999999999999999999999999999999999999999999988888774 45 78999999
Q ss_pred EeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 296 FCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
||.||++||++++|..|-|=+++++..
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCe
Confidence 999999999999999888877766543
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=244.40 Aligned_cols=257 Identities=16% Similarity=0.176 Sum_probs=205.2
Q ss_pred eEEEee-CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc---------------------------c-----e--
Q 016257 55 VTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------D-----I-- 99 (392)
Q Consensus 55 ~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~---------------------------~-----~-- 99 (392)
..+.+. .|.+.|.++.||+||+|||+|+.|+.|+||.+...+. . .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344566 8999999999999999999999999999999977110 0 0
Q ss_pred ------------------eecccc-CCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257 100 ------------------NLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (392)
Q Consensus 100 ------------------~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i 160 (392)
.+.... ....+|.+.|..+.||.++ +|++++.|.+|++|++...+++ ....|.+-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCccee-eEEecCCeeEEE
Confidence 000000 0123578899999999876 8999999999999999987776 456788899999
Q ss_pred EecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257 161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (392)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 239 (392)
+|+| |.+++++|+-|++++||++...+...-... ...|++++|.|+|+. .+.|+.+|.+++|+....+....
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEe
Confidence 9999 889999999999999999977665544332 247999999999998 89999999999999998766543
Q ss_pred ecc--------cCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 240 KRL--------LRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 240 ~~~--------~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
... ....|+.+.|.|.. ..+++.+.|..|+|||.+..+++..+...+....-....|+.||++|+++++|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 321 12379999999854 457777889999999998888887775445345557788999999999999999
Q ss_pred eEEEEEeecC
Q 016257 311 GAMITKLTVP 320 (392)
Q Consensus 311 ~i~iw~~~~~ 320 (392)
.|++|++...
T Consensus 569 ~VYiW~~~~~ 578 (712)
T KOG0283|consen 569 WVYIWKNDSF 578 (712)
T ss_pred eEEEEeCCCC
Confidence 9999998543
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=211.28 Aligned_cols=280 Identities=16% Similarity=0.159 Sum_probs=219.0
Q ss_pred eeEEEEcCC-CCeEEEE-------eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcE
Q 016257 66 PMTIAVNPS-GDDFVCS-------TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHL 136 (392)
Q Consensus 66 v~~~~~sp~-~~~l~~~-------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i 136 (392)
=+++.|||- .++||++ ...|++.|.++...+.+..... +.-...+..++|+++ .+.+++++.||++
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-----~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-----YDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-----eecccceeEeeecCCCcceEEEEecCceE
Confidence 367889992 2344433 2468899999875543333322 224568899999994 5678888999999
Q ss_pred EEEeCCC-CceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 137 RIMHWPS-LRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 137 ~i~d~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
++||+.. ..++..++.|..+|.++.|++ +++.+++++.|++|++|+...++.+.++.++. ..|...+|+|....+
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~-~~Iy~a~~sp~~~nl-- 162 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN-SCIYQAAFSPHIPNL-- 162 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc-cEEEEEecCCCCCCe--
Confidence 9999743 346677788888999999999 55678888999999999999999999988764 589999999987763
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
+++++.|+.+++||++.......+..|...+.++.|+. +.+.|++|+.|+.|+.||+++.+.......+| +-.|..
T Consensus 163 --fas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRk 239 (311)
T KOG0277|consen 163 --FASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRK 239 (311)
T ss_pred --EEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEE
Confidence 68899999999999997655556888999999999997 56789999999999999999877655555789 999999
Q ss_pred EEEeeCCC-eEEEEeCCCeEEEEEeecCccccc---eeeee--eeeeeeeeceEEEEeeecceeeeecc
Q 016257 294 VEFCPTQR-VVLTASKEWGAMITKLTVPADWKE---WQIYS--LLLALFLASAVVFYIFFENSDSFWNF 356 (392)
Q Consensus 294 ~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~d~~i~~W~~ 356 (392)
++|||... .|++++.|-+++||+...+..... .+..+ -.+--...++.++.++.|+.++||+-
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999654 899999999999999985543221 12222 22222347788999999999999983
No 61
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-32 Score=237.86 Aligned_cols=280 Identities=15% Similarity=0.119 Sum_probs=240.9
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d 84 (392)
..|++++++.+. .+++ ++..+.+.+|+.+ ...+..++. .+.+.+..|-|.++++++|...
T Consensus 374 ~dVRsl~vS~d~---~~~~-------Sga~~SikiWn~~--------t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~ 433 (888)
T KOG0306|consen 374 SDVRSLCVSSDS---ILLA-------SGAGESIKIWNRD--------TLKCIRTIT--CGYILASKFVPGDRYIVLGTKN 433 (888)
T ss_pred hheeEEEeecCc---eeee-------ecCCCcEEEEEcc--------CcceeEEec--cccEEEEEecCCCceEEEeccC
Confidence 358888998877 4566 3345669999987 555566665 4589999999999999999999
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-----Cceee-------cccC
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-----LRIIL-------DEPK 152 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~-------~~~~ 152 (392)
|.+.+||+.+........ .|.+.+.+++.+||+..+++|+.|.+|++||..- +.... +...
T Consensus 434 Gel~vfdlaS~~l~Eti~-------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIR-------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred CceEEEEeehhhhhhhhh-------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 999999999877544433 3889999999999999999999999999999741 22111 1122
Q ss_pred CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
-...|.++.+|||+++|+++--|.+++||-+.+-+..-.+.+|. -||.|+..+||++. +++++.|..|++|-+.
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSkl-----ivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKL-----IVTGSADKNVKIWGLD 580 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCe-----EEeccCCCceEEeccc
Confidence 33579999999999999999999999999999988888887764 59999999999997 8999999999999999
Q ss_pred CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
-|.+-+.+..|+..|.++.|-|+...+++++.|+.|+-||-.+.+.++.+ .+| ...|++++.+|+|.+++++|.|.+|
T Consensus 581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H-~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGH-HSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccc-hheeeeeEEcCCCCeEEeccCCcee
Confidence 99999999999999999999999999999999999999999999988887 578 8999999999999999999999999
Q ss_pred EEEEeec
Q 016257 313 MITKLTV 319 (392)
Q Consensus 313 ~iw~~~~ 319 (392)
++|....
T Consensus 659 RlwE~td 665 (888)
T KOG0306|consen 659 RLWERTD 665 (888)
T ss_pred EeeeccC
Confidence 9998653
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=210.48 Aligned_cols=294 Identities=13% Similarity=0.127 Sum_probs=224.9
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEeC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTT 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~ 83 (392)
.-=+++.|+|=-++-..+|++.. ++-.-.+.+.|.+.+ +...+ .....+ .-.+.+..++|+++. +.+++++.
T Consensus 9 f~GysvqfSPf~~nrLavAt~q~-yGl~G~G~L~ile~~-~~~gi----~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~G 81 (311)
T KOG0277|consen 9 FHGYSVQFSPFVENRLAVATAQH-YGLAGNGRLFILEVT-DPKGI----QECQSY-DTEDGLFDVAWSENHENQVIAASG 81 (311)
T ss_pred cccceeEecccccchhheeehhh-cccccCceEEEEecC-CCCCe----EEEEee-ecccceeEeeecCCCcceEEEEec
Confidence 33478899995443233444433 333334555555553 12111 111222 236789999999954 57889999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
||.+++||+......... ..+|...|.++.|++ ++..+++++-|++|++|+..-.+.+.++.+|...|+..+|
T Consensus 82 DGSLrl~d~~~~s~Pi~~------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHK------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF 155 (311)
T ss_pred CceEEEeccCCCCcchhH------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence 999999996443321111 124889999999999 6667888899999999999988888889998889999999
Q ss_pred cC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeee
Q 016257 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK 240 (392)
Q Consensus 163 ~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~ 240 (392)
+| ..+++++++.|+++++||++.......+..|. ..+.++.|+.-...+ +++++.|+.|+.||++..+ ++..+
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcE----EEecCCCceEEEEehhhccccceee
Confidence 99 67899999999999999998754444466554 579999999877763 7999999999999999754 56778
Q ss_pred cccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee-CCCeEEEEeCCCeEEEEEe
Q 016257 241 RLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 241 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~ 317 (392)
.+|...|+.++|||.. ..||+++.|-+++|||...+.-.......| ..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999964 789999999999999998766544444567 88899999998 4569999999999999973
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-31 Score=199.00 Aligned_cols=299 Identities=15% Similarity=0.182 Sum_probs=234.7
Q ss_pred CCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCC-----Cccc-cCCce-EEEeeCCCCCeeEEEEcCC
Q 016257 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-----TSVY-TSPLV-TYVFDESEGDPMTIAVNPS 74 (392)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~-----~~~~-~~~~~-~~~~~~h~~~v~~~~~sp~ 74 (392)
|-+-.|++++|+|.+ .+.+.|+. ..++++..+..-. .... .+|.. -..-+.|.+.|+|.+|+|+
T Consensus 30 ~dsqairav~fhp~g---~lyavgsn------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAG---GLYAVGSN------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred cchhheeeEEecCCC---ceEEeccC------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 345679999999998 57777776 3446666653211 1111 12222 2334678999999999999
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC----CCEEEEEe-CCCcEEEEeCCCCceeec
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD 149 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~ 149 (392)
|++|++|+.|.+|++..++...+. .........-|.+.|..++|-.+ +..|++++ .|..|++-|...++....
T Consensus 101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 999999999999999877654332 22223333348899999999653 45677655 477788888889999888
Q ss_pred ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC------CCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (392)
Q Consensus 150 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (392)
+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++... ....|.+++..|.|+. ++++..|
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d 252 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD 252 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence 99999988876 3445889999999999999999998888877432 1246899999999997 7899999
Q ss_pred cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc---eeeeeeeccccCcceEEEEEeeCC
Q 016257 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
....+||++.++.++.+..|...|+++.|||...|+++++.|.+|++-|++.. ++.......| ...+-.+.|+|..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d 331 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD 331 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999752 3333333567 7888899999999
Q ss_pred CeEEEEeCCCeEEEEEee
Q 016257 301 RVVLTASKEWGAMITKLT 318 (392)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~ 318 (392)
--+++.+.|.++.+|.++
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 889999999999999875
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=211.64 Aligned_cols=282 Identities=15% Similarity=0.149 Sum_probs=226.5
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.-|++-+.++.++. |+.+.+ -|.+..+|--. +.....++.||++.|+|++.+.+.+.+++|+.
T Consensus 10 ERplTqiKyN~eGD---LlFsca------KD~~~~vw~s~--------nGerlGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 10 ERPLTQIKYNREGD---LLFSCA------KDSTPTVWYSL--------NGERLGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccccceEEecCCCc---EEEEec------CCCCceEEEec--------CCceeeeecCCCceEEEEEecCCcceeeeccc
Confidence 35899999999883 444322 35567788654 44555679999999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----CCcEEEEeCC-------CCceeeccc
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILDEP 151 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~ 151 (392)
|.++++||+++++....... ..+|..+.|+++|++++.... .+.|.++|++ ..++...+.
T Consensus 73 D~t~kLWDv~tGk~la~~k~--------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKT--------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred cceeEEEEcCCCcEEEEeec--------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 99999999999997665543 468999999999998887653 4679999987 445566777
Q ss_pred CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeC
Q 016257 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (392)
Q Consensus 152 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~ 231 (392)
.+...++.+-|.|-+++|++|.+||.|..||+++++........|...|+.+.++++..+ +++++.|.+-++||+
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-----FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-----FITGSKDTTAKLVDV 219 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-----EEecccCccceeeec
Confidence 777899999999999999999999999999999986665554445558999999999997 899999999999999
Q ss_pred CCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc--EEEEecCCce------------eeeeeeccccCcceEEEEEe
Q 016257 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD--ICVVDVKKME------------INHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~------------~~~~~~~~~~~~~i~~~~~s 297 (392)
++.+.++.+.. ..++++.+++|...+++.|+.... |.-=+.+.++ .+... ++| -++|++++|+
T Consensus 220 ~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvAfh 296 (327)
T KOG0643|consen 220 RTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVAFH 296 (327)
T ss_pred cceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeEEC
Confidence 99988877765 679999999998877777654321 2222222332 22222 578 8999999999
Q ss_pred eCCCeEEEEeCCCeEEEEEee
Q 016257 298 PTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~ 318 (392)
|+|+..++|++||.|++..+.
T Consensus 297 PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcccccCCCCceEEEEEec
Confidence 999999999999999998765
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-31 Score=230.97 Aligned_cols=247 Identities=14% Similarity=0.146 Sum_probs=210.9
Q ss_pred eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
.-+.+.|+++.|+++|.+|++|..+|.|.|||....+....+.. .|...|-+++|+ +..+.+|+.|+.|..+
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~------~h~~rvg~laW~--~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG------SHASRVGSLAWN--SSVLSSGSRDGKILNH 285 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC------CcCceeEEEecc--CceEEEecCCCcEEEE
Confidence 33488999999999999999999999999999988775544432 277899999998 6689999999999999
Q ss_pred eCCCCceeec-ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 140 HWPSLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 140 d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
|++..+.... +..|...|..+.|++|++++|+|+.|+.+.|||.....++..+..|. ..|.+++|+|-...++ +..
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~-aAVKA~awcP~q~~lL--AsG 362 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT-AAVKALAWCPWQSGLL--ATG 362 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc-eeeeEeeeCCCccCce--EEc
Confidence 9998776655 56677799999999999999999999999999998888888887665 4799999999877632 134
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 296 (392)
.|+.|+.|++||..++..+..... ...|..+.|++..+-|+++ ..++.|.||+..+.+.+..+ .+| ...|..+++
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH-~~RVl~la~ 439 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGH-TSRVLYLAL 439 (484)
T ss_pred CCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCC-cceeEEEEE
Confidence 455799999999999988866554 6789999999998776664 35678999999998888776 689 899999999
Q ss_pred eeCCCeEEEEeCCCeEEEEEeecC
Q 016257 297 CPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 297 s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
+|||..+++|+.|.++++|++-..
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999998754
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-33 Score=220.48 Aligned_cols=288 Identities=13% Similarity=0.151 Sum_probs=231.4
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccC-CCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
+....+.|..|+|||++|++|+.||.|.+||..+++....+..... ...-+..+|.|+.||.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4567799999999999999999999999999999986555433222 223467899999999999999999999999999
Q ss_pred eCCCCceeeccc-CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 140 d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
.+++|.++..+. .|...|+++.|+.|+..+++++.|.++++--+.+|++++.+.+|.. .|+...|.++|.+ ++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~-----ii 364 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHH-----II 364 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCe-----EE
Confidence 999999998887 4556999999999999999999999999999999999999988765 7999999999998 89
Q ss_pred EeCCccEEEEEeCCCceeeeeeccc--CCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeeccc-cCcceEEE
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLH-LGTSIALV 294 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~ 294 (392)
+++.||+|++|+.++.+++.+++.. +.+|.++..-|. ...++++...++|.|.++. |+.++.+..+. ..+..-+.
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 9999999999999999998877654 457778777774 5788889899999999986 45555553332 14566677
Q ss_pred EEeeCCCeEEEEeCCCeEEEEEeecCcccc---ceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257 295 EFCPTQRVVLTASKEWGAMITKLTVPADWK---EWQIYSLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 295 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
..+|.|.++.+.++|+.++.+.+..++--+ +..-...-..+....+.+++-+-|+.+++|.
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 899999999999999999999887654322 1111111112222334455556689999995
No 67
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=9.1e-31 Score=235.51 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=186.9
Q ss_pred EeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCc
Q 016257 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH 135 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~ 135 (392)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+..................|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 888999999999999999976532111100001122478899999999975 69999999999
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
|++||+++++....+..|...|.+++|+|++.+|++++.|++|++||+++++.+..+..|.......+.|.+++..+ +.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence 99999999988877778888999999999999999999999999999999998888877665455678899887751 11
Q ss_pred EEEEeCCccEEEEEeCCCcee-eeeeccc-CCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceE
Q 016257 216 CTVQRGDKALLAVYDISTWNK-IGHKRLL-RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 292 (392)
...+.+.|+.|++||+++... +.....+ ...+....|++++++|++++ .|+.|++||+.+++........+ ..++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~ 307 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHK 307 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCc
Confidence 111224689999999987543 3222222 34555678899999999887 59999999999988766553334 66788
Q ss_pred EEEEeeC
Q 016257 293 LVEFCPT 299 (392)
Q Consensus 293 ~~~~s~~ 299 (392)
.++|.|.
T Consensus 308 g~~~~pk 314 (493)
T PTZ00421 308 GLCMMPK 314 (493)
T ss_pred ceEeccc
Confidence 8988885
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.2e-31 Score=214.15 Aligned_cols=263 Identities=16% Similarity=0.132 Sum_probs=218.8
Q ss_pred CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC---eEEEEeCCCeEEEEEEeCCccceeeccccCCCC
Q 016257 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (392)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (392)
.|+.+++|... +.....+.||.++|.+++|.-... .|++++.|.++++|..+.++......... .
T Consensus 123 YDg~~riWd~~---------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~---~ 190 (423)
T KOG0313|consen 123 YDGTSRIWDLK---------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC---R 190 (423)
T ss_pred cCCeeEEEecC---------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh---c
Confidence 47789999874 345567889999999888854333 59999999999999998877544433221 1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-------------------------CceeecccCCCCcEEEEEecC
Q 016257 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDEPKAHKSVLDMDFSL 164 (392)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~~~~i~~i~~~~ 164 (392)
.|...|.+++..++|..+++|+.|.+|.+|+.++ +.++..+.+|..+|.++.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 5899999999999999999999999999999321 123445567888999999998
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeec
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR 241 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~ 241 (392)
...+++++.|.+|+.||+.++..+.++.... .+.++..+|.... +++++.|..|++||.+++. ....+.
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~L-----l~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKL-----LASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccce-----eeecCCCCceeecCCCCCCCceeEEeee
Confidence 6689999999999999999999988887543 6999999998776 8999999999999999764 346778
Q ss_pred ccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 242 LLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 242 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ .+..+ .+| ...|.++.|+ ++..|++|+.|++++|+.-.
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h-~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGH-NDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccC-CceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999965 568899999999999999988 66665 688 9999999997 56789999999999998654
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-30 Score=204.44 Aligned_cols=287 Identities=14% Similarity=0.180 Sum_probs=224.5
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCc
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH 135 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~ 135 (392)
.|..-.+.|+++.|+++|..|++++.|.++++||..+++....+..+ .-.+..++|....+.++.++. |.+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-------kyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-------KYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-------cccccEEEEecCCceEEEccCCCCCc
Confidence 35555789999999999999999999999999999999876666543 346788888877667776665 889
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
|+..++.+.+.++-+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|+|+|-.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLi---- 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLI---- 154 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcE----
Confidence 9999999999999999999999999999999999999999999999999888877765443 356899999985
Q ss_pred EEEEeCCccEEEEEeCCCc--eeeeeec---ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc-
Q 016257 216 CTVQRGDKALLAVYDISTW--NKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT- 289 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 289 (392)
++.+.....|++||+|.. .+...+. ......+.+.|||||++++.++..+.+++.|.-+|..+..+.......
T Consensus 155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 566666669999999964 2333333 335678999999999999999999999999999999777663221111
Q ss_pred ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee--eeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY--SLLLALFLASAVVFYIFFENSDSFWNFPVA 359 (392)
Q Consensus 290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~ 359 (392)
..-...|+||++++++|+.||+|.+|+++.+.....+... ....+..........++.+..+.+|-....
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccc
Confidence 2357789999999999999999999999887766555331 112222233444444556788999976533
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.1e-32 Score=222.23 Aligned_cols=281 Identities=15% Similarity=0.194 Sum_probs=233.7
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.+++..+.|.++.. .+++|+. |..|++|....... ....+|.|..+.|+++.|.+++..+++++.
T Consensus 175 ~gev~~v~~l~~sd---tlatgg~------Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSD---TLATGGS------DRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred ccccceeEEccCcc---hhhhcch------hhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 46788899998863 3665554 77799999875542 233457788899999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
|+.+++|++...+...++.. |.+.|+++.|......+++|+.|.+|++||+....+..+.. ....+.+|..+
T Consensus 240 d~~~r~Wnvd~~r~~~TLsG-------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSG-------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred CCceeeeeccchhhhhhhcc-------cccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 99999999998876555443 78999999998877779999999999999999877765443 33456666666
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~ 243 (392)
...++++-.|++|++||++...+......+. .|+++..++++.. +.+++.|..+.+.|+++.+....+...
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence 4568889999999999999999988887553 7999999999998 788899999999999998877666543
Q ss_pred ----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 244 ----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 244 ----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
....+.+.|||++.|+++|+.||.|+||++.++++.......+....|++++|+|.|..|++++.++.+.+|.
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 2457889999999999999999999999999999988876555234799999999999999999999999993
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-32 Score=221.09 Aligned_cols=287 Identities=12% Similarity=0.163 Sum_probs=233.6
Q ss_pred EEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257 57 YVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (392)
Q Consensus 57 ~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (392)
..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+...++...+.. |.+.|..+++.. ..+++++.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-------H~G~V~Gi~v~~--~~~~tvgdDKt 130 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-------HEGLVRGICVTQ--TSFFTVGDDKT 130 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-------ccCceeeEEecc--cceEEecCCcc
Confidence 3579999999999999977 6899999999999999998877666543 788999999987 57888899999
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
|+.|-++.. .. ........+..+.-+..+..++++++ .|.|||.+...++..+..+.+ .+.++.|+|....+
T Consensus 131 vK~wk~~~~-p~-~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsI--- 202 (433)
T KOG0268|consen 131 VKQWKIDGP-PL-HTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSI--- 202 (433)
T ss_pred eeeeeccCC-cc-eeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchh---
Confidence 999998652 32 23334456777877777788998875 599999999999999988776 69999999998863
Q ss_pred EEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 295 (392)
+++++.|+.|.+||+++..+++.... ...-+.++|+|++-.++++++|..++.||++..+.......+| .+.|.+++
T Consensus 203 -Las~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVd 279 (433)
T KOG0268|consen 203 -LASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVD 279 (433)
T ss_pred -eeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEec
Confidence 67888999999999999988765543 4455689999988889999999999999999988777677899 99999999
Q ss_pred EeeCCCeEEEEeCCCeEEEEEeecCccccceeee---eeee-eeeeeceEEEEeeecceeeeeccccccccc
Q 016257 296 FCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY---SLLL-ALFLASAVVFYIFFENSDSFWNFPVARNQH 363 (392)
Q Consensus 296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~ 363 (392)
|||.|+-+++||.|.+|+||..+..+...++..- .... .....+..+++++.|+.||+|.....+.+-
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999999999999999977665443211 1111 112355677888889999999988776553
No 72
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=9.7e-30 Score=228.88 Aligned_cols=252 Identities=14% Similarity=0.112 Sum_probs=193.5
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeec------cccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcE
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL------AKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHL 136 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 136 (392)
..|.....++++..+++++.+.....|+...+....... ........|.+.|.+++|+| ++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 345556666776667777777777777755443221111 00011235889999999999 88999999999999
Q ss_pred EEEeCCCCc-------eeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257 137 RIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (392)
Q Consensus 137 ~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (392)
++||+.++. .+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+..+. ..|.+++|+|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-~~V~sla~spd 179 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-DQITSLEWNLD 179 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-CceEEEEEECC
Confidence 999997652 345567787899999999975 689999999999999999998888877654 47999999999
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCC-cEEEEECCCCCEEEEEe----CCCcEEEEecCCceeeeeee
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAMGS----KDGDICVVDVKKMEINHWSK 283 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~ 283 (392)
+.. +++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++++ .|+.|++||+++........
T Consensus 180 G~l-----Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 180 GSL-----LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred CCE-----EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 986 799999999999999999988888777654 45678999887777654 47899999998765333222
Q ss_pred ccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCc
Q 016257 284 RLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA 321 (392)
Q Consensus 284 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 321 (392)
..+....+....|++++.+|++++ .|+.|++|++....
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 233245667778999999998887 59999999998654
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2e-30 Score=210.70 Aligned_cols=276 Identities=16% Similarity=0.166 Sum_probs=217.0
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC---CEEEEEeCCCcEE
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG---SRFAAGGVDGHLR 137 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~ 137 (392)
-|.+.|.++... ++.+++|+.||.+++||..... ..... .|.+++.+++|.... ..|++++.|.+++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~~~~-------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IKTIV-------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EEEEe-------cCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 378888888887 6799999999999999987543 32222 478899988885433 3599999999999
Q ss_pred EEeCCCCcee----ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-------------------------Cee
Q 016257 138 IMHWPSLRII----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------------------------GVA 188 (392)
Q Consensus 138 i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-------------------------~~~ 188 (392)
+|.++.++.. ....+|...|.++...+++..+++|+.|..+++|+..+ +.+
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 9999876543 22347778999999999999999999999999999321 123
Q ss_pred eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 268 (392)
+.++.+| .++|.++.|++.+. +++++.|.+|+.||+.++..+..+.. .....+++.+|..++|++|+.|..|
T Consensus 253 ~vtl~GH-t~~Vs~V~w~d~~v------~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 253 LVTLEGH-TEPVSSVVWSDATV------IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred eEEeccc-ccceeeEEEcCCCc------eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCce
Confidence 4444444 55899999999655 79999999999999999988877665 5689999999999999999999999
Q ss_pred EEEecCCc--eeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCccccceee----eeeeeeeeeeceE
Q 016257 269 CVVDVKKM--EINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPADWKEWQI----YSLLLALFLASAV 341 (392)
Q Consensus 269 ~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~ 341 (392)
++||.+++ ........+| ...|.++.|+|... .|++|+.|+++++||++.... +.+.+ ...+.........
T Consensus 325 rl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~~~~~ 402 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWNEGGL 402 (423)
T ss_pred eecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEeccCCce
Confidence 99999875 4555555799 88999999999766 688999999999999997652 11211 1122222334558
Q ss_pred EEEeeecceeeeecc
Q 016257 342 VFYIFFENSDSFWNF 356 (392)
Q Consensus 342 ~~~~~~d~~i~~W~~ 356 (392)
+++++.|.++++...
T Consensus 403 IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 403 IVSGGADNKLRIFKG 417 (423)
T ss_pred EEeccCcceEEEecc
Confidence 888999999998764
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.8e-30 Score=202.06 Aligned_cols=268 Identities=18% Similarity=0.224 Sum_probs=212.6
Q ss_pred cCceeEEEEcCCCCc----cccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC
Q 016257 34 PSVLEIFSFDPKTTS----VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (392)
Q Consensus 34 ~~~i~i~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (392)
...|.-+.+++.... ........+.+..|.+++++++. ++.++|+|+.|.+|+|||+........+.
T Consensus 10 E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll------- 80 (362)
T KOG0294|consen 10 EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL------- 80 (362)
T ss_pred eeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee-------
Confidence 444555566554411 11122235567889999999999 58899999999999999998876544443
Q ss_pred CCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257 110 QDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (392)
Q Consensus 110 ~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 187 (392)
.|.+.|+++.|.++-. .|++|+.||.|.+|+......+..+..|.+.|+.++.+|.+++.++.+.|+.+++||+-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 3789999999998765 89999999999999999999998999999999999999999999999999999999999888
Q ss_pred eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc
Q 016257 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267 (392)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 267 (392)
.-..+...+. .+.+.|+|.|.+ ++... ...|-+|.+.+......+... ..+.++.|- ++..|++|..|+.
T Consensus 161 ~a~v~~L~~~--at~v~w~~~Gd~-----F~v~~-~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 161 VAFVLNLKNK--ATLVSWSPQGDH-----FVVSG-RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred cceeeccCCc--ceeeEEcCCCCE-----EEEEe-ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCce
Confidence 7766655443 456999999997 33333 456899998876655444432 446666664 5678999999999
Q ss_pred EEEEecCCceeeeeeeccccCcceEEEEE--eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 268 ICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 268 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
|.+||.....+...+ .+| ...|.++.+ .|++.+|+++|.||.|++||++....
T Consensus 231 i~~~D~ds~~~~~~~-~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEF-LAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EEEeccCCCccceee-ecc-hhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 999999987777666 689 999999985 35678999999999999999986544
No 75
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=3.9e-29 Score=225.99 Aligned_cols=254 Identities=9% Similarity=0.090 Sum_probs=185.1
Q ss_pred CCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccc-eeeccccCCCC
Q 016257 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPL 109 (392)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~ 109 (392)
|..+.+++|.... ......+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.+.... ...........
T Consensus 51 G~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 51 GLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 3466778876542 2244678899999999999996 789999999999999999764321 11000000112
Q ss_pred CCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257 110 QDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (392)
Q Consensus 110 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 188 (392)
.|...|.+++|+|++.. |++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 47789999999998875 5788999999999999988765553 556899999999999999999999999999999999
Q ss_pred eEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCc----cEEEEEeCCC-ceeeeeeccc--CCCcEEEEECCCCC
Q 016257 189 WTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLL--RKPASVLSISLDGK 257 (392)
Q Consensus 189 ~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d----~~i~v~d~~~-~~~~~~~~~~--~~~v~~~~~s~~~~ 257 (392)
+..+..|.... +....|++++.. +++++.+ +.|++||++. .+++.....+ ...+......++|.
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 88887765421 122335578776 5665544 4899999995 4455443322 22333333355689
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 258 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
++++|+.|+.|++|++..+.....- ......++.+++|.|..
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~-~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVN-EYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeec-ccccCCCccceEEcccc
Confidence 9999999999999999877543322 22226788999999964
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.4e-31 Score=216.18 Aligned_cols=280 Identities=14% Similarity=0.150 Sum_probs=227.8
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~ 85 (392)
.|.|++=+|.. +..+++|+. ||.+++|++. ...+...++.|.+.|..++++. ..+++++.|.
T Consensus 68 GV~~lakhp~~--ls~~aSGs~------DG~VkiWnls--------qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 68 GVSCLAKHPNK--LSTVASGSC------DGEVKIWNLS--------QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred ccchhhcCcch--hhhhhcccc------CceEEEEehh--------hhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence 57888888854 346776666 7779999998 5566678999999999999976 6788889999
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 165 (392)
+|+.|.++.. ....+ ...+.+..+.-+..+..+++++. .|.|||.+-..++..+.-....|.++.|+|.
T Consensus 130 tvK~wk~~~~-p~~ti--------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpv 198 (433)
T KOG0268|consen 130 TVKQWKIDGP-PLHTI--------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPV 198 (433)
T ss_pred ceeeeeccCC-cceee--------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCC
Confidence 9999998763 22222 23456677777777778888875 4999999888888888878889999999995
Q ss_pred C-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeeccc
Q 016257 166 S-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL 243 (392)
Q Consensus 166 ~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~ 243 (392)
. ..|+++..|+.|.+||++++++++.+.... .-..++|+|..-. +.++.+|..++.||++... ++.....|
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhccc
Confidence 5 467778899999999999999998876544 4688999995443 6889999999999999754 56677889
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
...|.+++|||.|+-+++|+.|.+|+||....+........-. -..|.++.||.|.+++++||+|+.|++|.-...+.
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999999999999998876554443322 56799999999999999999999999998874433
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.9e-30 Score=214.10 Aligned_cols=284 Identities=14% Similarity=0.147 Sum_probs=218.1
Q ss_pred CCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 63 ~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
.+.|.+++|+|... -+|+.+. -.+.||+..+......+.. ....+.++.|-.||++|++|...|.|++||+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 46899999999665 3555444 4599999887765443332 3468999999999999999999999999997
Q ss_pred CCCceeecccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
.+...+..+..|..++..+.|+|+ +..+++|+.|+.+++||+.+......+..|. ..|++.+|+|...++ +++|
T Consensus 98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht-DYVR~g~~~~~~~hi----vvtG 172 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT-DYVRCGDISPANDHI----VVTG 172 (487)
T ss_pred ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc-ceeEeeccccCCCeE----EEec
Confidence 776666777888889999999995 4567888899999999999888655666554 589999999988763 7999
Q ss_pred CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
+.||.|++||.+..........|+.+|..+.+-|.|..+++++. ..|++||+.+|.........| ...|+|+.+..++
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS 250 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC
Confidence 99999999999987544445568999999999999999999885 569999999654443333448 8999999999999
Q ss_pred CeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeee--eceEEEEeeecceeeeeccccccc
Q 016257 301 RVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFL--ASAVVFYIFFENSDSFWNFPVARN 361 (392)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~W~~~~~~~ 361 (392)
..|++|+-|+.+++|++..-+-...|...-.+..+.+ ....++.+..+|.+.+=.....++
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 9999999999999999764443334433333333322 234556666777766665444433
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=3.1e-30 Score=217.54 Aligned_cols=297 Identities=15% Similarity=0.185 Sum_probs=215.0
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
.......+++|+..|.++++.|.|..|++|+.|.+|++||+..............+ .....|+++.|++.|..|++.+
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEe
Confidence 34566789999999999999999999999999999999999876543332211111 1345899999999999999988
Q ss_pred CCCcEEEEeCCCCcee------------ecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeee-EEEe----
Q 016257 132 VDGHLRIMHWPSLRII------------LDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAW-TFLT---- 193 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~------------~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~-~~~~---- 193 (392)
.....+++|-...+.. ....+|...+++.+|+|+. ..+++++.||++++||+.+.+.. ..+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 8889999985432221 1224555689999999965 57999999999999999865432 2332
Q ss_pred cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCC--CcEEEEECCCCCEEEEEeCCCcE
Q 016257 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK--PASVLSISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i 268 (392)
....-+++.++|+|+++. ++++..||.|.+|+..+... ......|.. .|++++||+||++|++-+.|+++
T Consensus 314 ~g~Rv~~tsC~~nrdg~~-----iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL-----IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred CCcccCceeeecCCCcch-----hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 233447899999999998 79999999999999865432 223345554 89999999999999999999999
Q ss_pred EEEecCCceeeeeeec-cccCcceEEEEEeeCCCeEEEEeC------CCeEEEEEeecCccccce---eeeeeeeeeeee
Q 016257 269 CVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVPADWKEW---QIYSLLLALFLA 338 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~ 338 (392)
++||++..+....... .....+-+.++|||+.++|++|+. .|.+.+++..+-...... ...+........
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 9999998654332211 122456788999999999999874 367888876544322111 111111111223
Q ss_pred ceEEEEeeecceeeeec
Q 016257 339 SAVVFYIFFENSDSFWN 355 (392)
Q Consensus 339 ~~~~~~~~~d~~i~~W~ 355 (392)
-+.+++++.||.++++=
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 45677788899888763
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-28 Score=195.45 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=225.5
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~ 82 (392)
-+++|.++.|+++++. +++ +..++.+++|+.. .+....++..+.-.|..++|......++.++
T Consensus 13 ~~~~i~sl~fs~~G~~--lit-------ss~dDsl~LYd~~--------~g~~~~ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL--LIT-------SSEDDSLRLYDSL--------SGKQVKTINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred CCCceeEEEecCCCCE--EEE-------ecCCCeEEEEEcC--------CCceeeEeecccccccEEEEecCCceEEEcc
Confidence 3689999999999954 444 3457789999886 5555566777777899999977777777666
Q ss_pred C--CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257 83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (392)
Q Consensus 83 ~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i 160 (392)
. |.+|+..++.+.+.+..+.. |...|..++.+|-+..+++++.|++|++||++..++...+.....+ .+
T Consensus 76 tk~d~tIryLsl~dNkylRYF~G-------H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPG-------HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCC-------CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 5 88999999999987766654 7899999999998899999999999999999977765544433333 46
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEec--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 236 (392)
+|+|.|-++|++.....|++||++.- .+..++.. ......+.+.|+|+|+. ++.+...+.+++.|.-+|..
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----ILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----EEEEeCCCcEEEEEccCCcE
Confidence 89999999999988779999999853 33344432 33446889999999997 78888899999999999988
Q ss_pred eeeecccCCCc---EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257 237 IGHKRLLRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (392)
Q Consensus 237 ~~~~~~~~~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 313 (392)
+..+..+...- -..+|+||++++++|+.||+|.+|++++++........+ .+++.++.|+|.-.++++++ ..+.
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-~~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-GGPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-CCCccccccCCceeeeeecC--ceEE
Confidence 87776654332 567899999999999999999999999999888775546 88999999999866666654 5688
Q ss_pred EEEeec
Q 016257 314 ITKLTV 319 (392)
Q Consensus 314 iw~~~~ 319 (392)
+|-...
T Consensus 299 fw~p~~ 304 (311)
T KOG1446|consen 299 FWLPDE 304 (311)
T ss_pred EEeccc
Confidence 886653
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=9.9e-30 Score=229.07 Aligned_cols=280 Identities=14% Similarity=0.152 Sum_probs=234.5
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 140 (392)
.|...+.+..|+ ..++++++.+.+|++|+..++...... ...|.+.|.++++..-+.+|++|+.|.++++||
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~------l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTR------LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEee------ccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 356788899998 558999999999999999888754441 224889999999988788999999999999999
Q ss_pred CCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
..++++...+.+|.+.+.++... ...+++|+.|.+|++|+++++..+..+.+ +.++|+++..+ +.. ++++
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~-----lvsg 347 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPL-----LVSG 347 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCE-----EEEE
Confidence 99999999999999999988776 45688899999999999999999999887 55689999998 443 7999
Q ss_pred CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeccccCcceEEEEEeeC
Q 016257 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
+.|+.|++||..+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+ .+| ..-+..+.+ .
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-~~h-~~~v~~l~~--~ 422 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-QGH-TSLVSSLLL--R 422 (537)
T ss_pred ecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-cCC-ccccccccc--c
Confidence 99999999999999999999999999999988765 89999999999999999999 777766 577 777766665 6
Q ss_pred CCeEEEEeCCCeEEEEEeecCccccceeee--eeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257 300 QRVVLTASKEWGAMITKLTVPADWKEWQIY--SLLLALFLASAVVFYIFFENSDSFWNFPVARNQH 363 (392)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~ 363 (392)
+++|++++.|+.|++||....+...+.... .....+......++..+.|+.+++||++.+....
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 679999999999999999987766554432 1222222224677888899999999999887544
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=228.46 Aligned_cols=280 Identities=15% Similarity=0.211 Sum_probs=233.5
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEE-eeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..+.|..|+.+ .+..|.. +.+|.+|+.. ....... +.||.+.|.++++..-++.|++|+.
T Consensus 209 ~~~~~~q~~~~-----~~~~~s~------~~tl~~~~~~--------~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 209 HVVLCLQLHDG-----FFKSGSD------DSTLHLWDLN--------NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST 269 (537)
T ss_pred chhhhheeecC-----eEEecCC------CceeEEeecc--------cceEEEeeccCCCCCceeEEEecCCCEEEEEec
Confidence 35666777732 3444444 6667788765 3333344 9999999999999876789999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
|.++++||..++++...+.. |.+.+.++... +.++++|+.|.+|++|+++++..+..+.+|..+|.++..+
T Consensus 270 D~t~rvWd~~sg~C~~~l~g-------h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQG-------HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CCcEEeEecCCCcEEEEecC-------CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 99999999999998777653 67788888774 4478889999999999999999988887788899999998
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecc
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL 242 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~ 242 (392)
+.++++|+.|++|++||+.++++++++.+|. ..|+++.+.+. .. +++++.|+.|++||+++. +++..+..
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-~~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-GRVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhceeeeeecCCc-ceEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcC
Confidence 7899999999999999999999999999865 48999988876 43 799999999999999999 89999999
Q ss_pred cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
|..-+..+.+ .+++|++++.|++|++||..+++....+...| .+.|+.+++. ...+++++.||++++||++.+..
T Consensus 412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred Cccccccccc--ccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 8888866554 57899999999999999999999998885435 6888888876 45789999999999999998766
Q ss_pred ccce
Q 016257 323 WKEW 326 (392)
Q Consensus 323 ~~~~ 326 (392)
...+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 5433
No 82
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4.2e-30 Score=203.82 Aligned_cols=297 Identities=11% Similarity=0.115 Sum_probs=225.0
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc---ceeecc--------ccCCCCCCCCCeEEEEecCC
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---DINLLA--------KKMPPLQDAGPQKCLSFSVD 123 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~---~~~~~~--------~~~~~~~~~~~v~~~~~s~~ 123 (392)
....+..|.+++.+.+|+|||.++|+|+.|..|+|.|++..-. ...... -......|...|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4456788999999999999999999999999999999973210 000000 00112357889999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcc
Q 016257 124 GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEK 199 (392)
Q Consensus 124 ~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~ 199 (392)
...|++|+.|++|+++|+..... ..+......+|.++.|+|.|.+|+.|..-.++++||+++-++...-. ..+.+.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999999964332 22333444589999999999999999999999999999887754432 345568
Q ss_pred eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-cc-CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 277 (392)
|+++.+++.++. .++++.||.|++||--+++++..+. .| ...|.+..|..+|+|+++.+.|..+++|.+.++.
T Consensus 264 i~~V~Ys~t~~l-----YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 264 ITQVRYSSTGSL-----YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eeEEEecCCccE-----EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999996 6999999999999999988887764 34 3579999999999999999999999999999999
Q ss_pred eeeeeecccc---CcceEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecc
Q 016257 278 INHWSKRLHL---GTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFEN 349 (392)
Q Consensus 278 ~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~ 349 (392)
.+..+..... ..--+...|+....+++.-.+ .+.+.-||-+.......|.+.. ....+........+++.|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 8877643210 122345668777777766543 5788899988776655554322 1112222344556777899
Q ss_pred eeeeecc
Q 016257 350 SDSFWNF 356 (392)
Q Consensus 350 ~i~~W~~ 356 (392)
..|+|--
T Consensus 419 raRFWyr 425 (430)
T KOG0640|consen 419 RARFWYR 425 (430)
T ss_pred eeeeeee
Confidence 9999964
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=208.39 Aligned_cols=240 Identities=16% Similarity=0.205 Sum_probs=211.1
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 143 (392)
..+.++...|..+.+++|+.|.++.++|...++....+.. |...|+.+.|+|+...+++++.|..|++|....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-------HTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-------cceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 3688888888878999999999999999988876555443 678999999999999999999999999999987
Q ss_pred CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCC
Q 016257 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGD 222 (392)
Q Consensus 144 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
.........|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .+-.+++.+|+|||.. +.++..
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi-----fgtgt~ 367 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI-----FGTGTP 367 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE-----EeccCC
Confidence 7777777788889999999999999999999999999999999988777653 3346899999999986 789999
Q ss_pred ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe
Q 016257 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (392)
Q Consensus 223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 302 (392)
|+.+++||+.++..+..+.+|.++|..++|+.+|.+|++++.|+.|++||++..+....+.... ..++.++.|.+.|++
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999988777765444 568999999999999
Q ss_pred EEEEeCCCeEEEEE
Q 016257 303 VLTASKEWGAMITK 316 (392)
Q Consensus 303 l~~~~~dg~i~iw~ 316 (392)
|+.++.|=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99997775554444
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1e-29 Score=214.44 Aligned_cols=293 Identities=17% Similarity=0.202 Sum_probs=219.0
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d 84 (392)
--|.++++.|.+.| +++|+- |+.+++|.|..-...+.. ...........|.+++|++.|..|++.+..
T Consensus 168 k~Vsal~~Dp~GaR---~~sGs~------Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 168 KIVSALAVDPSGAR---FVSGSL------DYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEEEEeeecCCCce---eeeccc------cceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEEecC
Confidence 35888999998865 555554 888999999854333322 112223335579999999999999888888
Q ss_pred CeEEEEEEeCCccceeecc-----ccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCC-----
Q 016257 85 GGCKLFEVYGGATDINLLA-----KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA----- 153 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 153 (392)
...+|+|-...+...-... .-...-.|...++|.+|+|+ ...+++++.||++|+||+...+.......+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 8899999765543222211 11223357889999999995 457899999999999999765433222211
Q ss_pred -CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCc--ceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257 154 -HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (392)
Q Consensus 154 -~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v 228 (392)
.-+++.++|++|+++||+|..||.|.+|+.... .+...+...|.. .|+++.|+++|++ +++-+.|+++++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tLKv 390 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTLKV 390 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCceee
Confidence 126899999999999999999999999997543 223333333333 7999999999998 899999999999
Q ss_pred EeCCCcee-eeeeccc--CCCcEEEEECCCCCEEEEEeC------CCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257 229 YDISTWNK-IGHKRLL--RKPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 229 ~d~~~~~~-~~~~~~~--~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
||++..+. +....+. ..+-+.++|||+.++|++|+. .|++.+||..+.+.+..+. .. ...|..+.|+|.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~-~aSvv~~~Whpk 468 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-IS-TASVVRCLWHPK 468 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CC-CceEEEEeecch
Confidence 99997654 3333222 346678999999999999864 4789999999998888774 33 678999999999
Q ss_pred CCeEEEEeCCCeEEEEE
Q 016257 300 QRVVLTASKEWGAMITK 316 (392)
Q Consensus 300 ~~~l~~~~~dg~i~iw~ 316 (392)
-+.|++|+.||.++++-
T Consensus 469 LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred hhheeeecCCCceEEEE
Confidence 88899999999999874
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.6e-31 Score=201.33 Aligned_cols=281 Identities=12% Similarity=0.128 Sum_probs=233.1
Q ss_pred EEEeeCCCCCeeEEEEcC---CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257 56 TYVFDESEGDPMTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 56 ~~~~~~h~~~v~~~~~sp---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (392)
..+..||+.+|..++||| +|-+|++++.|+.-.+-+-+++..+..+.. |.+.|.+..++.+....++++.
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-------hkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-------HKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-------cCcceeeeecCchhhhhhhhcc
Confidence 355789999999999986 888999999999888777777776666553 7899999999999989999999
Q ss_pred CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCc
Q 016257 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
|-+-++||.-+|..+..+ .|..-|..++|+.|.++|++|+.+.-++|||++..+. ...+..+ ...|+.+.|....+.
T Consensus 80 dftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-tg~Ir~v~wc~eD~~ 157 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-TGGIRTVLWCHEDKC 157 (334)
T ss_pred cchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-CCcceeEEEeccCce
Confidence 999999999999887544 5666799999999999999999999999999987654 3444444 457999999988876
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 291 (392)
++++.+|+.|++||.++++.++.+.. ..+|+++.++++|++|.++. .+.|.+||.++..+++.... ...|
T Consensus 158 -----iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~---P~nV 227 (334)
T KOG0278|consen 158 -----ILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM---PCNV 227 (334)
T ss_pred -----EEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC---cccc
Confidence 78889999999999999999888765 67899999999999887765 56799999999988887643 5789
Q ss_pred EEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc---------ceeeeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257 292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADWK---------EWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR 360 (392)
Q Consensus 292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~ 360 (392)
.+.+.+|+...+++|+.|..++.||..++.+.. +..+.+++.+. ..++++.||+||+|....++
T Consensus 228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-----~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-----LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-----eeeccCCCceEEEEEecCCC
Confidence 999999999999999999999999998775543 33444555444 55556679999999987554
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.4e-29 Score=206.32 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=224.3
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
+.++.-+|.. ..+.+|+. +....+++.+ ..+....++||...|+.+.|+|+...+++++.|..
T Consensus 222 i~ald~~~s~---~~ilTGG~------d~~av~~d~~--------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~ 284 (506)
T KOG0289|consen 222 ITALDIIPSS---SKILTGGE------DKTAVLFDKP--------SNQILATLKGHTKKITSVKFHKDLDTVITASADEI 284 (506)
T ss_pred eeEEeecCCC---CcceecCC------CCceEEEecc--------hhhhhhhccCcceEEEEEEeccchhheeecCCcce
Confidence 4445555542 23555544 4445566655 45566789999999999999999999999999999
Q ss_pred EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC--CcEEEEEecC
Q 016257 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSL 164 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~ 164 (392)
|+||......... ....|.++|+.+..+|.|.||++++.|++....|++++..+....... -.+++.+|+|
T Consensus 285 i~vws~~~~s~~~-------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 285 IRVWSVPLSSEPT-------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred EEeeccccccCcc-------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 9999987665322 222488999999999999999999999999999999998876554432 2689999999
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 244 (392)
||..|.+|..|+.+++||+.++.....|.+| .++|..++|+.+|-+ ++++.+|+.|++||+|..+....+....
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence 9999999999999999999999988888875 569999999999987 8999999999999999887766665433
Q ss_pred -CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc--eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257 245 -KPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 245 -~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 317 (392)
..+.++.|.+.|.+|+.++.|=.|++++-.+. ..+..+ ..| .+..+++.|....+++++++.|..++++.+
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 47999999999999999987766666664433 334333 355 678999999999999999999988888764
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.3e-29 Score=229.11 Aligned_cols=293 Identities=18% Similarity=0.241 Sum_probs=227.9
Q ss_pred eCCCCCeeEEEEcCCCCeEEEEe--CCCeEEEEEEeCCccc----ee-eccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257 60 DESEGDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATD----IN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 60 ~~h~~~v~~~~~sp~~~~l~~~~--~d~~i~iw~~~~~~~~----~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (392)
.+++..|.+++.+|||..+++|+ .|+.+.||+.+.-... .. +.........|.+.|+|+.|+|||++||+|+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34456799999999999999999 8999999997542210 01 11111222358899999999999999999999
Q ss_pred CCcEEEEeCCC------------------CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257 133 DGHLRIMHWPS------------------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (392)
Q Consensus 133 dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 194 (392)
|+.|.||.... .+.+..+.+|...|.++.|+|++.+|++++.|++|.+|+.++.+.+..+..
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998762 124555677888999999999999999999999999999999988888887
Q ss_pred CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc------CCCcEEEEECCCCCEEEEEeC----
Q 016257 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSK---- 264 (392)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~---- 264 (392)
|+. .|..+.|.|-|++ +++-++|++|++|++.+....+.+..+ ..-...+.|||||++|++...
T Consensus 170 H~s-~VKGvs~DP~Gky-----~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 170 HQS-LVKGVSWDPIGKY-----FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred ccc-cccceEECCccCe-----eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 765 7999999999998 899999999999998776655544432 234678999999999998642
Q ss_pred CCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-----CC------------eEEEEeCCCeEEEEEeecCcccccee
Q 016257 265 DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QR------------VVLTASKEWGAMITKLTVPADWKEWQ 327 (392)
Q Consensus 265 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iw~~~~~~~~~~~~ 327 (392)
-..+.|.+-.+.+.-..+ .+| ..++.+++|+|. .+ .+|+|+.|++|.||....++++-+..
T Consensus 244 ~~~~~IieR~tWk~~~~L-vGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDL-VGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred cceeEEEecCCceeeeee-ecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 346889998887766655 589 889999999982 11 67899999999999998776654321
Q ss_pred ----eeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257 328 ----IYSLLLALFLASAVVFYIFFENSDSFWNFPVAR 360 (392)
Q Consensus 328 ----~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~ 360 (392)
............-.++.++.||+|.+..++..+
T Consensus 322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 111222222234478888999999999987654
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-28 Score=189.65 Aligned_cols=238 Identities=15% Similarity=0.210 Sum_probs=205.4
Q ss_pred EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (392)
Q Consensus 57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (392)
..++||+.+++.+.++.+|.+|.+++.|.+..+|-..+++.+.... .|.+.|.++..+.+.+++++|+.|.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-------GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-------GHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-------CCCceEEEEEecCCcceeeecccccee
Confidence 3478999999999999999999999999999999988887655544 388999999999999999999999999
Q ss_pred EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-----CCcEEEEECC-------CCeeeEEEecCCCcceEEEE
Q 016257 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTE-------DGVAWTFLTRNSDEKIELCR 204 (392)
Q Consensus 137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~-------~~~~~~~~~~~~~~~v~~~~ 204 (392)
++||+++|+++.... ...+|..+.|+++|++++.+.. .+.|.++|++ ..++...+..+. ..++.+.
T Consensus 77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~ 154 (327)
T KOG0643|consen 77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSAL 154 (327)
T ss_pred EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeee
Confidence 999999999986554 4468999999999998877654 3679999998 345566666554 5799999
Q ss_pred ecCCCCcceEEEEEEeCCccEEEEEeCCCcee-eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 283 (392)
|.|-++. +++|.++|.|..||.++++. +...+.|...|+.+++++|..++++++.|.+-++||..+.++++.+.
T Consensus 155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 9999997 89999999999999999754 55567888999999999999999999999999999999999998875
Q ss_pred ccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257 284 RLHLGTSIALVEFCPTQRVVLTASKEWG 311 (392)
Q Consensus 284 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 311 (392)
. ..+|++.+++|...+++.|+....
T Consensus 230 t---e~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 230 T---ERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred e---cccccceecccccceEEecCCcee
Confidence 4 679999999998888877765533
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-29 Score=223.62 Aligned_cols=249 Identities=14% Similarity=0.183 Sum_probs=198.8
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCC------------------------------------CC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK------------------------------------TT 47 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~------------------------------------~~ 47 (392)
.|.|.++.|++|+ .++|+||. |+.|+||.+-.. ..
T Consensus 267 ~gaIw~mKFS~DG---KyLAsaGe------D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 267 KGAIWAMKFSHDG---KYLASAGE------DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred CCcEEEEEeCCCC---ceeeecCC------CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 5789999999999 45777666 788999998640 00
Q ss_pred cc----------------ccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257 48 SV----------------YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (392)
Q Consensus 48 ~~----------------~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (392)
.. .-.+.....|.||.+.|..+.||.++ +|++++.|.+|++|++...+++..+ .|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F--------~H 408 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF--------SH 408 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE--------ec
Confidence 00 00112233688999999999999764 8999999999999999987764443 58
Q ss_pred CCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257 112 AGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (392)
Q Consensus 112 ~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 190 (392)
...|+|++|+| |.+++++|+-||+||||++...+.+ ....-+.-|++++|.|||+..+.|+.+|.+++|+....+...
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 99999999999 8899999999999999999876654 344555789999999999999999999999999998877665
Q ss_pred EEecC-------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC--CcEEEEECCCCCEEEE
Q 016257 191 FLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--PASVLSISLDGKYLAM 261 (392)
Q Consensus 191 ~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~ 261 (392)
.+... ....|+.+.|.|..... +++.+.|..|+|||.+..+.+..+++... .-....|+.||++|++
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 54321 12269999999865542 67888899999999988888877776542 2345689999999999
Q ss_pred EeCCCcEEEEecCC
Q 016257 262 GSKDGDICVVDVKK 275 (392)
Q Consensus 262 ~~~dg~i~iwd~~~ 275 (392)
+++|..|++|++..
T Consensus 564 ~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDS 577 (712)
T ss_pred eecCceEEEEeCCC
Confidence 99999999999854
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-28 Score=203.10 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=223.1
Q ss_pred CceeeeecCCCCCcce-------eEEEeCCCCCCCCCcCceeEEEEcCCCCc-------cc-----------cC-CceEE
Q 016257 4 GGTVTCGSWIKRPENV-------NLVVLGKSSRASSSPSVLEIFSFDPKTTS-------VY-----------TS-PLVTY 57 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~-------~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-------~~-----------~~-~~~~~ 57 (392)
..|-..+.|-|+-... .-+++|...- .+.+|.+.|-.+...... .. .. .....
T Consensus 40 eWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs-~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~ 118 (422)
T KOG0264|consen 40 EWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTS-GSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEIS 118 (422)
T ss_pred cccceEEEEcCCcccccCCCceeEEEEEEeecC-CCCccEEEEEeecCCCcccccccccccccccccCCccccccceEEE
Confidence 4577889999972221 1344444321 226788877764311110 00 00 11122
Q ss_pred EeeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeecc---ccCCCCCCCCCeEEEEecCC-CCEEEEEeC
Q 016257 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLA---KKMPPLQDAGPQKCLSFSVD-GSRFAAGGV 132 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 132 (392)
....|.+.|+.+.+.|+.. .+|+.+..+.++|||............ .......|...-.+++|++. .-.|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 2345899999999999665 666778889999999976543332211 11122236666788999984 447899999
Q ss_pred CCcEEEEeCCCCce-------eecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCC--CeeeEEEecCCCcceEE
Q 016257 133 DGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIEL 202 (392)
Q Consensus 133 dg~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~v~~ 202 (392)
|++|.+||+..... ...+..|...|..++|++ +..++++++.|+.+.|||+|+ .++...... +...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeE
Confidence 99999999964322 334566777999999999 556789999999999999994 444444444 4558999
Q ss_pred EEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCcee--
Q 016257 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEI-- 278 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~-- 278 (392)
++|+|-+..+ +++++.|++|.+||+|+.+ ++..+..|...|..+.|||+. ..||+++.|+.+.+||+..-..
T Consensus 278 ~~fnp~~~~i----lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 278 VAFNPFNEFI----LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EEeCCCCCce----EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999998763 7999999999999999754 567888999999999999965 6789999999999999975221
Q ss_pred -----------eeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257 279 -----------NHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT 318 (392)
Q Consensus 279 -----------~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 318 (392)
+..+..+| ...|..+.|+|+.. .|++.+.|+.+.||++.
T Consensus 354 ~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 12445788 89999999999887 57788999999999987
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.4e-29 Score=197.50 Aligned_cols=274 Identities=12% Similarity=0.192 Sum_probs=224.0
Q ss_pred CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEE------eCCccc------
Q 016257 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV------YGGATD------ 98 (392)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~------~~~~~~------ 98 (392)
+..|.+-+||.++ ...+..++.||.+.|++++|++.+.++++++.|++..||.. ......
T Consensus 166 ASADhTA~iWs~E--------sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 166 ASADHTARIWSLE--------SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred cccccceeEEeec--------cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 3457888999998 66777889999999999999999999999999999999982 221000
Q ss_pred ---------------------eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257 99 ---------------------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (392)
Q Consensus 99 ---------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 157 (392)
..+.........|.+.|.+..|-..|+.+++++-|.+..+||+++++.+..+.+|....
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 00000011122367788899999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (392)
Q Consensus 158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 236 (392)
+.++-+|..+++++++.|.+.++||.+..- .+..|++|. ..|+++.|..+.+ ++++++|.+|++||+++...
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS~vF~~dd~------vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTSVVFNTDDR------VVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeEEEEecCCc------eeecCCCceEEEeeeccccC
Confidence 999999999999999999999999998543 345566655 4799999999988 79999999999999997654
Q ss_pred -eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee---eeeccccCcceEEEEEeeCCC--eEEEEeCCC
Q 016257 237 -IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQR--VVLTASKEW 310 (392)
Q Consensus 237 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg 310 (392)
+..++ ...+++.++.+..+..++.--.+..|++||+....+.+ ...++| ...|+|++|..+-. -|++++.|.
T Consensus 391 plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR 468 (481)
T KOG0300|consen 391 PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDR 468 (481)
T ss_pred cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccCcccccccccccc
Confidence 34443 46789999999998999999989999999998766443 334688 88999999987644 588999999
Q ss_pred eEEEEEeecCc
Q 016257 311 GAMITKLTVPA 321 (392)
Q Consensus 311 ~i~iw~~~~~~ 321 (392)
.+.-|+++.+.
T Consensus 469 ~v~gW~in~p~ 479 (481)
T KOG0300|consen 469 MVAGWKINTPT 479 (481)
T ss_pred eeeeeEecccC
Confidence 99999998764
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=202.95 Aligned_cols=290 Identities=17% Similarity=0.187 Sum_probs=229.7
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~ 82 (392)
.++|+|++|+|..+ .+++ +|-++.+++|.+|...... + +.+.-...+|.+..|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~p--lllv-------aG~d~~lrifqvDGk~N~~----l--qS~~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLV-------AGLDGTLRIFQVDGKVNPK----L--QSIHLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCc--eEEE-------ecCCCcEEEEEecCccChh----h--eeeeeccCccceeeecCCCceEEEecc
Confidence 57899999999763 3444 4557889999999765432 2 22222367999999999999 888999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
....++.||+.+.+....-... . .....+.....|+++++|+..+..|.|.+....+++.+..+ .-.+.|.+++|
T Consensus 278 rrky~ysyDle~ak~~k~~~~~---g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~f 352 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPY---G-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTF 352 (514)
T ss_pred cceEEEEeeccccccccccCCC---C-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEE
Confidence 9999999999887642211110 0 11346788899999999999999999999999888776543 34568999999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC------cee
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------WNK 236 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~------~~~ 236 (392)
+.|++.|++++.+|.|.+||++..++++.+.....-.-++++.++++.+ +++|+..|.|.|||.++ .++
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCCCCc
Confidence 9999999999999999999999999999998655444567888899997 89999999999999764 345
Q ss_pred eeeecccCCCcEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecc-ccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257 237 IGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAM 313 (392)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 313 (392)
+..+......|++++|+||.++||.++. +..+++-.+.+......++.. ..-+.|+|++|+|.+.+|+.|..+|.+.
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 5666666778999999999999998874 577999998887665544321 1146799999999999999999999999
Q ss_pred EEEee
Q 016257 314 ITKLT 318 (392)
Q Consensus 314 iw~~~ 318 (392)
+|.+.
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99985
No 93
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.5e-27 Score=215.77 Aligned_cols=226 Identities=12% Similarity=0.050 Sum_probs=172.5
Q ss_pred EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc--------eeeccc
Q 016257 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--------IILDEP 151 (392)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~ 151 (392)
|+.++.+++|+.........+ ..|.+.|.+++|+|+ +++|++|+.|++|++||+.++. ....+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-------~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-------KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-------cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 556788999987654322222 247889999999996 7899999999999999997642 222345
Q ss_pred CCCCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257 152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (392)
Q Consensus 152 ~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 230 (392)
+|...|.+++|+|++.. |++++.|++|++||+++++....+.. ...|.+++|+|+|.. +++++.|+.|++||
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~l-----Lat~s~D~~IrIwD 195 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNL-----LSGTCVGKHMHIID 195 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCE-----EEEEecCCEEEEEE
Confidence 67779999999998875 57889999999999999887776652 347999999999996 67788999999999
Q ss_pred CCCceeeeeecccCCCcEE-----EEECCCCCEEEEEeCCC----cEEEEecCC-ceeeeeeeccccCcceEEEEEeeCC
Q 016257 231 ISTWNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDG----DICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
+++++.+..+..|.+.+.. ..|++++.+|++++.|+ .|+|||+++ .+.+.........+.+......++|
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 9999998888888776433 23568999999888764 699999995 4444433211102333333334568
Q ss_pred CeEEEEeCCCeEEEEEeecC
Q 016257 301 RVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~ 320 (392)
.++++|+.|+.|++|++...
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CEEEEEECCCeEEEEEccCC
Confidence 89999999999999999754
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.7e-30 Score=210.24 Aligned_cols=286 Identities=18% Similarity=0.208 Sum_probs=224.8
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
....+..|.+.+..+.|-++...|++|+.|..|++|++...+....-. ..+..++|+.+.|.++++++++++.|+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-----LaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-----LAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-----hhccCCCcceeeecCCCceEEeecCCC
Confidence 344577899999999999998999999999999999997766211110 112357899999999999999999999
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
.+++|++.+.+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++.... .+..++.++ .
T Consensus 242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~~--~---- 313 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCSI--S---- 313 (459)
T ss_pred ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEecc--e----
Confidence 99999999999999999999999999998877779999999999999999988888776433 466666652 2
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc--ccCcceE
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIA 292 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~ 292 (392)
.++++..|+.|+.||.++..+......+. .|+++..+++|..|.+++.|.++.+.|+++.+....+... ......+
T Consensus 314 -~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 314 -DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred -eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 16888899999999999998887777654 9999999999999999999999999999998877665311 1134688
Q ss_pred EEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee-----eeeeeeeeceEEEEeeecceeeeec
Q 016257 293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS-----LLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
.+.|||++.|+++||.||.|+||++.+.+--++..... ...........++++..+..+.+|.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999999998764332221111 1111112333444555566777773
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.5e-28 Score=192.14 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=194.9
Q ss_pred CCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 63 EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 63 ~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
.+.|.+++||| ...++++++.|++|++|+++....... .....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 57899999999 555677999999999999987532111 122347899999999999999999999999999999
Q ss_pred CCCceeecccCCCCcEEEEEecCCCC--eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
.+++. ..+..|..+|..+.|-+... .|++|+.|.+|+.||.+...++.++..+. .++++..-.. + ++.
T Consensus 102 ~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv~~p----m---~vV 171 (347)
T KOG0647|consen 102 ASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADVLYP----M---AVV 171 (347)
T ss_pred cCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhccCc----e---eEE
Confidence 99955 46677888999999987554 89999999999999999999999887553 5666544322 1 567
Q ss_pred eCCccEEEEEeCCCceeee--eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-eeeeecccc--------C
Q 016257 220 RGDKALLAVYDISTWNKIG--HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHL--------G 288 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~--------~ 288 (392)
+..++.|.+|+++.+.... ........++|++..+|....+.|+.+|++.|..+..+.. .....+.|. -
T Consensus 172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 7778899999997654321 1122355789999999988889999999999998887522 122224452 2
Q ss_pred cceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce
Q 016257 289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW 326 (392)
Q Consensus 289 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 326 (392)
..|++++|+|.-..|++++.||++.+||-+....++..
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence 36889999999999999999999999998877666543
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-28 Score=214.35 Aligned_cols=243 Identities=16% Similarity=0.176 Sum_probs=206.1
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC-CCCCeeEEEEcCCCCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~ 82 (392)
...|+++.|++++. .++.|.. ++.++||+.. .......+.+ |...|-+++|. +..+.+|+
T Consensus 217 ~~~vtSv~ws~~G~---~LavG~~------~g~v~iwD~~--------~~k~~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS---HLAVGTS------DGTVQIWDVK--------EQKKTRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred CCceEEEEECCCCC---EEEEeec------CCeEEEEehh--------hccccccccCCcCceeEEEecc--CceEEEec
Confidence 56899999999995 4666555 5568899876 3333344556 99999999997 66899999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.++.|..+|+...+..... ...|...|..++|++|+.++|+|+.|+.+.|||....+++..+..|...|..++|
T Consensus 278 r~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW 351 (484)
T ss_pred CCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence 9999999999887754441 2248889999999999999999999999999999888888889999999999999
Q ss_pred cC-CCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257 163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (392)
Q Consensus 163 ~~-~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 239 (392)
+| ....||+|+ .|+.|++||..+++.+..+... ..|..+.|++..+.+. ...|..++.|.||+..+.+.+..
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence 99 566888865 7999999999999998887644 4799999999987621 34455678999999999999999
Q ss_pred ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (392)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 276 (392)
+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999998764
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4e-28 Score=202.15 Aligned_cols=289 Identities=15% Similarity=0.152 Sum_probs=219.3
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCc--cccC---------CceEEEeeCCCCCeeEEEEcC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYTS---------PLVTYVFDESEGDPMTIAVNP 73 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~--~~~~---------~~~~~~~~~h~~~v~~~~~sp 73 (392)
-++.||+.+|++.+ +..++. ++.|.=|........ .... +..... ++|...+.+++.++
T Consensus 143 ~s~~~vals~d~~~---~fsask------~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 143 LSVTSVALSPDDKR---VFSASK------DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred CcceEEEeeccccc---eeecCC------CcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 47899999999865 443333 344555544322211 1111 111111 48999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 153 (392)
||++||+|+.|..|.||+..+.+....+. .|.+.|.+++|-...+.|++++.|+++++|+++....+.++.+|
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFK-------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhccc-------ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 99999999999999999999987654432 37899999999988889999999999999999998888899999
Q ss_pred CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
++.|.+|.-..-++.+-+|+.|+++++|++.... +.+...+.+.+.|++|-.+.. +++|+.+|.|.+|++.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~H------fvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDEH------FVSGSDNGSIALWSLLK 357 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecccc------eeeccCCceEEEeeecc
Confidence 9999999988888877788899999999994332 233333455799999998887 69999999999999998
Q ss_pred ceeeeeecc-c-----------CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCC
Q 016257 234 WNKIGHKRL-L-----------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 234 ~~~~~~~~~-~-----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
.+++..... | +..|++++..|...++++|+.+|.|++|-+..+- .+..+......+.|++++|+++|
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence 887654431 1 1378999999999999999999999999998772 22222222237899999999999
Q ss_pred CeEEEE-eCCCeEEEEEee
Q 016257 301 RVVLTA-SKEWGAMITKLT 318 (392)
Q Consensus 301 ~~l~~~-~~dg~i~iw~~~ 318 (392)
+.|++| +....+--|-..
T Consensus 438 k~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred CEEEEecccccccceeeEe
Confidence 966555 445444444433
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-28 Score=203.83 Aligned_cols=256 Identities=16% Similarity=0.155 Sum_probs=216.7
Q ss_pred EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccc---------cCCC--CCCCCCeEEEEecCCCC
Q 016257 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---------KMPP--LQDAGPQKCLSFSVDGS 125 (392)
Q Consensus 57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~s~~~~ 125 (392)
..+..|.-+|.+++++|+..+.++++.+++|.-|++.+++....+... .... -.|...+.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999999999888743221111 1111 25778899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEe
Q 016257 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (392)
Q Consensus 126 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (392)
+|++|+.|..|.||+.++.+.+..+..|.+.|.+++|-.....+++++.|+++++|+++....+.++.+|+. .|..+.-
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Ida 294 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDA 294 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeech
Confidence 999999999999999999999988899999999999998888899999999999999999888888888766 6888888
Q ss_pred cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (392)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 285 (392)
...++. +.+++.|+++++|++... ....+.++.+.+.|++|-. ..++++|+.+|.|.+|++.+.+++......
T Consensus 295 L~reR~-----vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 295 LSRERC-----VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred hcccce-----EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecc
Confidence 777774 667779999999999643 3345677788999999964 468899999999999999999888776655
Q ss_pred cc----------CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 286 HL----------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 286 ~~----------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
|. ...|++++..|...++++|+.+|.|++|.+..+
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 52 127899999999999999999999999999865
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-26 Score=175.74 Aligned_cols=288 Identities=15% Similarity=0.196 Sum_probs=211.4
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccc------eee--ccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD------INL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~------~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (392)
.....|.+++|+|.|.+.++|+...+++|-....-... ... .........|.+.|.|.+|+|+|++|++|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 34678999999999999999999999887654322111 000 0011122347899999999999999999999
Q ss_pred CCcEEEEeCCCCce-----eecccCCCCcEEEEEecCC----CCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEE
Q 016257 133 DGHLRIMHWPSLRI-----ILDEPKAHKSVLDMDFSLD----SEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (392)
Q Consensus 133 dg~i~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~----~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~ 202 (392)
|.+|++..+....+ -.++.-|.+.|..++|-.+ +..|++++ .|..|++-|...++..+.+.+|.. .|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg-hila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG-HILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc-cEEE
Confidence 99999987654332 1244556778999999543 45677665 466788889989999988887765 4544
Q ss_pred EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--c-----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--L-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 275 (392)
+ ++-++-. +++++.|.+|+.||++-..++..+.. | ...|.+++..|.|++|++|-.|....+||++.
T Consensus 189 l-yswn~~m-----~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 189 L-YSWNGAM-----FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred E-EEecCcE-----EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 4 2223333 78999999999999998877765532 1 35789999999999999999999999999999
Q ss_pred ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC--ccccceeee----eeeeeeee-eceEEEEeeec
Q 016257 276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP--ADWKEWQIY----SLLLALFL-ASAVVFYIFFE 348 (392)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~----~~~~~~~~-~~~~~~~~~~d 348 (392)
+..++.+ ..| ...|.++.|+|...++++++.|.+|++-|+... ++++..-+. ..+.+... ..-..++.+.|
T Consensus 263 ~r~iq~f-~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 263 GRMIQRF-HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred Cceeeee-CCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence 9999887 478 899999999999999999999999999999743 222211110 11112222 12244555679
Q ss_pred ceeeeeccc
Q 016257 349 NSDSFWNFP 357 (392)
Q Consensus 349 ~~i~~W~~~ 357 (392)
.+..+|.++
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999864
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1e-27 Score=189.62 Aligned_cols=274 Identities=12% Similarity=0.117 Sum_probs=211.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.-.|.+++|+|... .+++.|+- |++|++|+++..+.... .....|.++|.+++|+.||..+++|+.
T Consensus 27 ~DsIS~l~FSP~~~--~~~~A~SW------D~tVR~wevq~~g~~~~------ka~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 27 EDSISALAFSPQAD--NLLAAGSW------DGTVRIWEVQNSGQLVP------KAQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred ccchheeEeccccC--ceEEeccc------CCceEEEEEecCCcccc------hhhhccCCCeEEEEEccCCceEEeecc
Confidence 45689999999443 35654444 88999999986532221 335568999999999999999999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 161 (392)
|+.+++||+.+++.. .+ -.|.++|..+.|-+... .|++|+-|.+|+.||++...++.++. -.+.++++.
T Consensus 93 Dk~~k~wDL~S~Q~~-~v-------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVS-QV-------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred CCceEEEEccCCCee-ee-------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 999999999998632 22 13889999999988655 89999999999999999887775543 345677766
Q ss_pred ecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--ee
Q 016257 162 FSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IG 238 (392)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~ 238 (392)
.- ..+++++..++.|.+|+++++.. .+....+..-.+++++..++... .+.|+-.|.+.+..+..+.+ -.
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-----~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-----FALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-----eEeeeecceEEEEecCCCCccCce
Confidence 54 45788888899999999976533 23333444557899999999886 58899999999998887532 22
Q ss_pred eecccC---------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE-eC
Q 016257 239 HKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SK 308 (392)
Q Consensus 239 ~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~ 308 (392)
.++.|. ..|++++|+|.-..|++.+.||++.+||-+....+... ..| ..+|++.+|+.+|.+++.+ +.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~-~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETH-PQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcC-CCccceeEecCCCCEEEEEeec
Confidence 333333 35788999999999999999999999998877766654 456 8999999999999987755 44
Q ss_pred C
Q 016257 309 E 309 (392)
Q Consensus 309 d 309 (392)
|
T Consensus 315 D 315 (347)
T KOG0647|consen 315 D 315 (347)
T ss_pred c
Confidence 4
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=8.1e-28 Score=209.76 Aligned_cols=283 Identities=13% Similarity=0.091 Sum_probs=225.9
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecC-CCCEEEEEe
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSV-DGSRFAAGG 131 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~ 131 (392)
.+.+.+.+|...|..+++.+. ..++++++||++++|+-...+...... ...|.+-|.. ++|-+ ++-.+++|+
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~-----~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHA-----FEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCccccccee-----cccCcceeeccceeccccCcceEeec
Confidence 456789999999999998754 489999999999999987665433211 1124555555 77765 555799999
Q ss_pred CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
.|..+.+|...+..+...+.+|...|.+++...++. +++||.|.++++|... ++...+.+| ...|.+++.-|++.
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~~- 153 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPENT- 153 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCCc-
Confidence 999999999999999999999999999999887777 9999999999999764 444556655 55899999999996
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 291 (392)
+++|+.|..|++|.- ++.++.+.+|...|+.+++-+++ .|++++.||.|++|++ +++.+... .+| ..-|
T Consensus 154 -----~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~-~gh-tn~v 222 (745)
T KOG0301|consen 154 -----YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM-HGH-TNFV 222 (745)
T ss_pred -----EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-ecc-ceEE
Confidence 699999999999986 56788899999999999998775 5678889999999999 66666655 588 9999
Q ss_pred EEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257 292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV 358 (392)
Q Consensus 292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~ 358 (392)
.+++..+++..++++++|++++||+.......-.......-.+..+..+.+++++.||.||+|....
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 9999888889999999999999999873221111111122334455677888999999999998873
No 102
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2.6e-28 Score=205.46 Aligned_cols=284 Identities=13% Similarity=0.119 Sum_probs=228.9
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~ 85 (392)
-|..+..+.... .|.+|+. +.|+||++...+... +..........+-|.++..+|||+.|++|+.-.
T Consensus 421 vVcAvtIS~~tr---hVyTgGk-------gcVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 421 VVCAVTISNPTR---HVYTGGK-------GCVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred EEEEEEecCCcc---eeEecCC-------CeEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccccc
Confidence 344455555542 3554444 339999997654332 222222233467899999999999999999999
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~ 165 (392)
++.|||+.......+..... ..-.+.+++.+||.+..+++..||.|.|||+.+...+..+.+|.+.+.||..++|
T Consensus 488 tlsiWDLAapTprikaelts-----sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTS-----SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred eeeeeeccCCCcchhhhcCC-----cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC
Confidence 99999998765332221111 2246788999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC
Q 016257 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK 245 (392)
Q Consensus 166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 245 (392)
|..|-+|+-|.+|+.||+++++.+.... ....|.++-.+|.+.+ ++.|-+++.+.|......+ ...+..|..
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dW-----lavGMens~vevlh~skp~-kyqlhlheS 634 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDW-----LAVGMENSNVEVLHTSKPE-KYQLHLHES 634 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccc-----eeeecccCcEEEEecCCcc-ceeeccccc
Confidence 9999999999999999999988776544 3447999999999998 7888889989888876543 346677889
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
-|.++.|.+.|+++++.+.|+.+..|...-|..+..... .+.|.++.+|.|.++|++|+.|....+|.+.
T Consensus 635 cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 999999999999999999999999999988877665433 7899999999999999999999999998763
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2.2e-28 Score=205.87 Aligned_cols=283 Identities=13% Similarity=0.165 Sum_probs=224.7
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 140 (392)
.|.+-|.++.+|...+.++||+..+ |+|||+..... +.....+..+.....++++.+.|||+.|++|++-.++.|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~--k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGN--KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCC--CCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 4888899999999999999988776 99999976532 22222344444567899999999999999999999999999
Q ss_pred CCCCceeec--ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 141 WPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 141 ~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
+........ +......++.++.+||.+..+++..||.|.|||+.+...++.+++|.+ .+.|+..+++|.. +.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtk-----lW 567 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTK-----LW 567 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCce-----ee
Confidence 976654332 223334688999999999999999999999999999999999998876 5999999999998 89
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
+|+-|++++.||++.++.+.... ....|.++..+|++.+|++|-+++.+.+......+.... ..| ++.|.++.|.+
T Consensus 568 TGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql--hlh-eScVLSlKFa~ 643 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLH-ESCVLSLKFAY 643 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceee--ccc-ccEEEEEEecc
Confidence 99999999999999988765443 356899999999999999999999999988766555443 467 89999999999
Q ss_pred CCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeee--eeeceEEEEeeecceeeeecc
Q 016257 299 TQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLAL--FLASAVVFYIFFENSDSFWNF 356 (392)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~W~~ 356 (392)
.|+++++.+.|+.+-.|....+..........+...+ ......+++++.|..-.++.+
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999998866553222222222221 224446666777766666543
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.8e-28 Score=200.60 Aligned_cols=259 Identities=13% Similarity=0.155 Sum_probs=199.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcccc--CCceEEEeeCCCCCeeEEEEcCCCC-eEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGD-DFVC 80 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~ 80 (392)
.+.|..+...|.+.. ++++++. .+.+.||++......... .......|.+|++.-++++|++... .|++
T Consensus 124 ~gEVnRaRymPQnp~--iVAt~t~------~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPN--IVATKTS------SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred CccchhhhhCCCCCc--EEEecCC------CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 467778888887654 6665544 455888888644332221 2344557899999899999999554 7899
Q ss_pred EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCC--CCceeecccCCCCcE
Q 016257 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSV 157 (392)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i 157 (392)
++.|++|.+||+................-.|...|..++|++ +..+|++++.|+.+.|||++ +.+.......|...|
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999999776543222222223335889999999999 66788999999999999999 455555667778899
Q ss_pred EEEEecC-CCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257 158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (392)
Q Consensus 158 ~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 235 (392)
.+++|+| ++..||+|+.|++|++||+|+.+ ++.++..| ...|.++.|+|....+ +++++.|+.+.+||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etv----LASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETV----LASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCce----eEecccCCcEEEEeccccc
Confidence 9999999 55678999999999999999754 55666655 4579999999998863 7899999999999997522
Q ss_pred --------------eeeeecccCCCcEEEEECCCCCE-EEEEeCCCcEEEEecCC
Q 016257 236 --------------KIGHKRLLRKPASVLSISLDGKY-LAMGSKDGDICVVDVKK 275 (392)
Q Consensus 236 --------------~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~ 275 (392)
.+....+|...|..+.|+|+..+ +++.++|+.+.||.+..
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23455678889999999998765 67788999999999864
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.3e-27 Score=185.73 Aligned_cols=268 Identities=15% Similarity=0.143 Sum_probs=207.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
.-.|.++.|+|...+ |++ +.-|+.+++|+++.. .+...++ |..++.+++|.+ ...+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~--LLv-------ssWDgslrlYdv~~~--------~l~~~~~-~~~plL~c~F~d-~~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSD--LLV-------SSWDGSLRLYDVPAN--------SLKLKFK-HGAPLLDCAFAD-ESTIVTGGL 73 (323)
T ss_pred hhceeeEEEcCcCCc--EEE-------EeccCcEEEEeccch--------hhhhhee-cCCceeeeeccC-CceEEEecc
Confidence 345899999987654 455 446888999998743 2223333 789999999987 457899999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
||.|+.+|+.+++.. ....|..++.++.+++....+++|+-|++|++||.+.......+ ...+.|.++...
T Consensus 74 dg~vr~~Dln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVS 144 (323)
T ss_pred CceEEEEEecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEecc
Confidence 999999999988632 22248899999999998889999999999999999874443333 333478888776
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEE-EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc----eeee
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG 238 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~ 238 (392)
++.|++|+.|..+.+||+++.....+ .....+-.++++++-|++.. .+.++-+|.|.+=.++.. +...
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhce
Confidence 77899999999999999997654332 22334457899999998776 688889999988766654 2223
Q ss_pred eecccC---------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257 239 HKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (392)
Q Consensus 239 ~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 308 (392)
.++.|. .+|++++|+|--..||||+.||.|.+||+.+.+.+..+.. . ...|.+++|+.+|..||.++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-Y-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-C-CCceEEEEeccCCCeEEEEec
Confidence 333332 4799999999999999999999999999999988877643 3 567999999999999999874
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-28 Score=184.71 Aligned_cols=260 Identities=13% Similarity=0.129 Sum_probs=199.3
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcE
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL 136 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 136 (392)
-..|.+.|..+...--|+.|||++.|++|+|+..++......+. ....|.++|..++|.. -|..|++++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~----~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA----ELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee----EecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 35688999988888889999999999999999998776422111 1224899999999976 89999999999999
Q ss_pred EEEeCCCCce--eecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCC--
Q 016257 137 RIMHWPSLRI--ILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD-- 208 (392)
Q Consensus 137 ~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~-- 208 (392)
.||.-++++- ......|...|++++|-|. |-.|++++.||.|.|.+.+.. -....+...|.-.|+++.|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999877743 3344566679999999884 567999999999999998754 2223333334456999999986
Q ss_pred -CCc------ceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCC----CEEEEEeCCCcEEEEecCC
Q 016257 209 -GTK------PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDG----KYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 209 -~~~------~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd~~~ 275 (392)
|.. .-..-+++++.|+.|+||+...++ .-..+..|...|+.++|.|.- .+||++++||++.||-.+.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 310 001116999999999999998753 334578899999999999963 6799999999999997663
Q ss_pred c--eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257 276 M--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW 323 (392)
Q Consensus 276 ~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 323 (392)
. +-...+.... ...++.++||..|..|+.++.|+.+.+|.-+...++
T Consensus 243 e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 243 EYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred ccCcccccccccC-CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 2 1111222223 678999999999999999999999999987765443
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=7.1e-26 Score=201.58 Aligned_cols=316 Identities=21% Similarity=0.221 Sum_probs=240.1
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
|+++ .+|. .+++-++.|..+ +.+++|++. .....++++++...|+++.=+|--+.+|.|..+|+
T Consensus 162 Ital-~HP~-TYLNKIvvGs~~------G~lql~Nvr--------t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ 225 (910)
T KOG1539|consen 162 ITAL-LHPS-TYLNKIVVGSSQ------GRLQLWNVR--------TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGT 225 (910)
T ss_pred eeeE-ecch-hheeeEEEeecC------CcEEEEEec--------cCcEEEEecccccceeEeccCCcceEEEEeccCce
Confidence 5554 3553 567777777774 459999998 67788899999999999999998889999999999
Q ss_pred EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEecC
Q 016257 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSL 164 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~ 164 (392)
|.+++++.++....+.. ..+.|++++|.-||+. +++|+..|.+.+||++..+.+......| +.|....|.|
T Consensus 226 ViifNlK~dkil~sFk~-------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 226 VIIFNLKFDKILMSFKQ-------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP 298 (910)
T ss_pred EEEEEcccCcEEEEEEc-------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence 99999999987666542 2489999999999985 5666667999999999887776666444 6777788887
Q ss_pred CCCeEEEEcCCCcEEEEECCC--Cee------------------------------------------------------
Q 016257 165 DSEFLATTSTDGSARIWKTED--GVA------------------------------------------------------ 188 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~--~~~------------------------------------------------------ 188 (392)
....+++++.|..+++|=.++ +.+
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 777788887777766653221 100
Q ss_pred ---------------------------------------------eEE------------EecC----CCcceEEEEecC
Q 016257 189 ---------------------------------------------WTF------------LTRN----SDEKIELCRFSK 207 (392)
Q Consensus 189 ---------------------------------------------~~~------------~~~~----~~~~v~~~~~~~ 207 (392)
..+ +... ....+++++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 000 0000 112456677777
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS-- 282 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 282 (392)
.|+. .+.|...|.|.+|++.++-....+ ..|+.+|+.++...-++.+++++.+|.+++||.++..+....
T Consensus 459 CGNF-----~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 459 CGNF-----VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred cCce-----EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 7775 677888999999999999877777 578999999999988999999999999999998876432221
Q ss_pred --------------------------------------eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc
Q 016257 283 --------------------------------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK 324 (392)
Q Consensus 283 --------------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 324 (392)
..+| ...|++++|||||++|++++.|++|++||+.+..-..
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 2467 8899999999999999999999999999998775433
Q ss_pred -------ceeeeeeeeeeeeeceEEEEeeec-ceeeeecc
Q 016257 325 -------EWQIYSLLLALFLASAVVFYIFFE-NSDSFWNF 356 (392)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~W~~ 356 (392)
...+.+++.+.+++...+ | ..|++|.-
T Consensus 613 ~~~vd~~~~sls~SPngD~LAT~Hv-----d~~gIylWsN 647 (910)
T KOG1539|consen 613 GLLVDSPCTSLSFSPNGDFLATVHV-----DQNGIYLWSN 647 (910)
T ss_pred eEecCCcceeeEECCCCCEEEEEEe-----cCceEEEEEc
Confidence 334556666665555444 6 67999964
No 108
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.8e-26 Score=197.39 Aligned_cols=323 Identities=12% Similarity=0.173 Sum_probs=247.1
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~ 82 (392)
..+|.|+|++..... +|.|. .++.|++|++.. ...+...+.++. ..|.+++|++ +..|.+.+
T Consensus 25 Ps~I~slA~s~kS~~---lAvsR------t~g~IEiwN~~~-------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g 87 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ---LAVSR------TDGNIEIWNLSN-------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSG 87 (691)
T ss_pred ccceEEEEEeccCCc---eeeec------cCCcEEEEccCC-------CceeeEEEecCCCCceeeEEEcc-CCeEEeec
Confidence 467999999998754 55444 477799999874 345555666654 5899999995 45778888
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec--ccCCCCcEEEE
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHKSVLDM 160 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~i 160 (392)
.+|.|.-||+.+.+....... ..+.|.+++.+|.+..++.|+.||.+..++...++.... +....+.|.++
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~-------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDS-------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CCceEEEEecccCceeEEecC-------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 999999999999886555433 357999999999999999999999888888877765433 33345689999
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe-------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
+|+|++..+++|+.||.|++||...+..+.... .....-|.++.|-.++. ++++...|+|.+||...
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIF 234 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccC
Confidence 999999999999999999999999887766221 11233578888888887 79999999999999999
Q ss_pred ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee---eeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
+..++.+..|...|.+++..+++..+++++.|+.|.-|...+.+. .......| ...|.+++..++ .+++|+.|.
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeecc--eEEecceee
Confidence 999999999999999999999999999999999999998877643 23333566 889999999877 899999999
Q ss_pred eEEEEEeecCcccc-cee--eeeeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257 311 GAMITKLTVPADWK-EWQ--IYSLLLALFLASAVVFYIFFENSDSFWNFPVA 359 (392)
Q Consensus 311 ~i~iw~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~ 359 (392)
.+.+-....-.... ... ..............++..-.++.+.+|.+..+
T Consensus 312 ~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~ 363 (691)
T KOG2048|consen 312 TLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSV 363 (691)
T ss_pred EEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCc
Confidence 99887665311110 011 11111111223344545556888999998877
No 109
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-27 Score=195.45 Aligned_cols=203 Identities=37% Similarity=0.577 Sum_probs=173.5
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe-
Q 016257 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT- 193 (392)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~- 193 (392)
-..++|+.+|..+++|+.||++|+|++.+...+.....|+..|.+++|+|||++|++.+.| ..+||+.+++..+....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 3889999999999999999999999999888888889999999999999999999999999 89999999997777665
Q ss_pred cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 268 (392)
...+.....+.|+.++....+.+.+.....+.|..||+..++. ..+.......|++++.+++|+++|.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 3344567889999887555555566666777788877654332 11112224589999999999999999999999
Q ss_pred EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
.|++..+.+..+..++.| ...|+.+.|+||.+++++.+.|..+.+..+..
T Consensus 306 ai~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999 88999999999999999999999999998876
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=205.55 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=175.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 189 (392)
..+++++.++.|++.+.|+..|.|-+|++++|-....+ ..|.++|++++...-++.+++++.+|.+++||..+...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 57889999999999999999999999999998877666 467789999999999999999999999999999988877
Q ss_pred EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
..+.... .+.++..+..... ++.+.+|-.|.++|..+.+.++.+.+|...|++++|||||++|++++.|++|+
T Consensus 529 ~~l~l~~--~~~~iv~hr~s~l-----~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 529 KSLRLGS--SITGIVYHRVSDL-----LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred eeeccCC--Ccceeeeeehhhh-----hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 7776544 5788888887765 68888899999999999999999999999999999999999999999999999
Q ss_pred EEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT 318 (392)
Q Consensus 270 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~ 318 (392)
+||+.++.++-.+.. ..+.+++.|+|+|.+||+...| ..|++|.-.
T Consensus 602 ~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999998877643 6799999999999999999988 899999643
No 111
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=207.04 Aligned_cols=317 Identities=11% Similarity=0.155 Sum_probs=246.1
Q ss_pred CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc--cceeeccccCCC
Q 016257 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPP 108 (392)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~ 108 (392)
+|.|+.|++|.+......... .....++.|.+.|+.+...-+++.|++++.|-+|++|+..... +... .
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~--~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st-------i 113 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPST--PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST-------I 113 (735)
T ss_pred cCCCceEEEeccccccCCccc--chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh-------h
Confidence 344788999999865543321 1345688999999999999999999999999999999987764 1111 1
Q ss_pred CCCCCCeEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCce--e--------eccc-CCCCcEEEEEecCCCCeEEEEcCCC
Q 016257 109 LQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDFSLDSEFLATTSTDG 176 (392)
Q Consensus 109 ~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~ 176 (392)
-+|...|.|+++ .++..++|+|+-|+.|.+||+.++.. + ..+. ++..+|++++.++.|..|++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 148899999999 78888999999999999999987732 1 1122 4556899999999999999999999
Q ss_pred cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC
Q 016257 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (392)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (392)
.+++||.++.+.+..+.+|.. .|+.+..++||.. +++++.||+|++||+...+++.++..|...+.++..+|+=
T Consensus 194 ~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred ceEEeccccccceeeeecccc-ceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 999999999999999997665 7999999999998 8999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCceee-eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---------
Q 016257 257 KYLAMGSKDGDICVVDVKKMEIN-HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW--------- 326 (392)
Q Consensus 257 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------- 326 (392)
.++++|+.||.|..=|+++.... ..... ..+|..+..+...+-+-+++.|+.|+-|.......+.+.
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~ 344 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTD 344 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCccccc
Confidence 99999999999999999985433 33322 557888887755555577888999999977643222111
Q ss_pred ------ee-----eeeeeee-------eeeceEEEEeeecceeeeecccccccccCC
Q 016257 327 ------QI-----YSLLLAL-------FLASAVVFYIFFENSDSFWNFPVARNQHGG 365 (392)
Q Consensus 327 ------~~-----~~~~~~~-------~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~ 365 (392)
.. ...+.+. ......+++--.+|.+.+||+-.+..+...
T Consensus 345 ~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 345 SNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred CCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 00 0011111 112234555567899999999877655443
No 112
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.9e-27 Score=186.68 Aligned_cols=254 Identities=14% Similarity=0.203 Sum_probs=192.1
Q ss_pred CceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce---------------------------------
Q 016257 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI--------------------------------- 99 (392)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~--------------------------------- 99 (392)
+.....|++|.+.|++++|+.||++|++++.|+.|++|+++......
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 44455789999999999999999999999999999999997643200
Q ss_pred -----eecccc----------C----CCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257 100 -----NLLAKK----------M----PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (392)
Q Consensus 100 -----~~~~~~----------~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i 160 (392)
....+. . ..-.|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 000000 0 000123344555555677899999999999999998 77776666555667788
Q ss_pred EecCCCCeEEEEcCCCcEEEEECC---CC-----eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
+.||+|+++++++-.--|++|.+- .| +....+.+| ...|..++|+++..+ +++.+.||.+++||.+
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r-----~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence 999999999999988889999863 22 223344544 457999999999998 8999999999999986
Q ss_pred Cce-------eeeee----cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257 233 TWN-------KIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (392)
Q Consensus 233 ~~~-------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 301 (392)
-.- .++.. ......-..++.+|+|+.||... ...+++|..++++....+...| ...|++++|+++|+
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIH-STTISSISYSSDGK 386 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhh-cCceeeEEecCCCc
Confidence 321 11111 11233444799999999998876 4579999999999888888899 99999999999999
Q ss_pred eEEEEeCCCeEEEEE
Q 016257 302 VVLTASKEWGAMITK 316 (392)
Q Consensus 302 ~l~~~~~dg~i~iw~ 316 (392)
++++++ |..+++..
T Consensus 387 ~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 387 YIATCG-DRYVRVIR 400 (420)
T ss_pred EEeeec-ceeeeeec
Confidence 999987 55777765
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.1e-28 Score=209.56 Aligned_cols=284 Identities=17% Similarity=0.193 Sum_probs=221.9
Q ss_pred EEEEc-CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--
Q 016257 68 TIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-- 144 (392)
Q Consensus 68 ~~~~s-p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-- 144 (392)
.+..+ |.+++|++|++||.|++|+........... -......|...|+.+....+++.|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence 44444 467789999999999999986654311110 00111237789999999999999999999999999999776
Q ss_pred ceeecccCCCCcEEEEEe-cCCCCeEEEEcCCCcEEEEECCCCee--eE--------EEecCCCcceEEEEecCCCCcce
Q 016257 145 RIILDEPKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVA--WT--------FLTRNSDEKIELCRFSKDGTKPF 213 (392)
Q Consensus 145 ~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~d~~i~vwd~~~~~~--~~--------~~~~~~~~~v~~~~~~~~~~~~~ 213 (392)
-+...+..|.+.|.+++. -++...+|+|+-|+.|.+||+.++.. +. .+..++...|++++.++.+..
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~-- 185 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI-- 185 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE--
Confidence 455667778889999999 77888999999999999999997622 22 222244568999999999864
Q ss_pred EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
+++|+..+.+++||.++++.+..+++|...|.++-.++||..+++++.||+|++||+...+++..+ ..| ...|++
T Consensus 186 ---ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH-~e~VWa 260 (735)
T KOG0308|consen 186 ---IVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVH-KEGVWA 260 (735)
T ss_pred ---EEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-Eec-cCceEE
Confidence 789999999999999999999999999999999999999999999999999999999999988886 688 777999
Q ss_pred EEEeeCCCeEEEEeCCCeEEEEEeecCcccc-ceeeeeeeeeeee--eceEEEEeeecceeeeeccccc
Q 016257 294 VEFCPTQRVVLTASKEWGAMITKLTVPADWK-EWQIYSLLLALFL--ASAVVFYIFFENSDSFWNFPVA 359 (392)
Q Consensus 294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~W~~~~~ 359 (392)
+..+|+-.++++|+.||.|..-++..+.... .+........+.+ ....+-.+..|..|+=|.....
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999999999999999999999988753221 1111111111111 1233356667899999987543
No 114
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1.6e-26 Score=201.76 Aligned_cols=338 Identities=14% Similarity=0.112 Sum_probs=241.1
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc-----------ccCC------ceE------EEeeCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV-----------YTSP------LVT------YVFDES 62 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~-----------~~~~------~~~------~~~~~h 62 (392)
-|++++|...+....++++++. |..|+||.+...+..- ...+ ... ..+.||
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQ------D~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQ------DRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCC------ceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 5788899887664467777666 7789999987544110 0000 001 124599
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC-CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
++.|+++.|+|.+..|++++.|.++.+|...+...+..-... .... .........-|+|+++.+++-+..|-.++|..
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR-lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR-LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE-eecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 999999999999999999999999999997665322221111 1111 22346788999999999999999999999984
Q ss_pred CCC---ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee------------------------------
Q 016257 142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA------------------------------ 188 (392)
Q Consensus 142 ~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------------------------ 188 (392)
+.. .+.....+|.+.|.+++|+|.|++|++.+.|.+-|+|---..+.
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 332 22334567778999999999999999999999888874320000
Q ss_pred --------------------------------------------------------------------------------
Q 016257 189 -------------------------------------------------------------------------------- 188 (392)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (392)
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence
Q ss_pred ------------eEEEecCCCcceEEEEecCCCCcceEEEEEEeC-----CccEEEEEeCCCceeeeeecccCCCcEEEE
Q 016257 189 ------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----DKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (392)
Q Consensus 189 ------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 251 (392)
++++. +|...|++++.+|+++. ++++. +...|.+|+..+...++.+..|.-.|+.++
T Consensus 506 EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gnl-----iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGNL-----IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred HHHHHHhccchhhHHhc-cCceeEEEEEecCCCCE-----EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 00111 12345888999999985 44444 345799999999999989999999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceeee---eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc---
Q 016257 252 ISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE--- 325 (392)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--- 325 (392)
|||||++|++.+.|.++.+|......... ...+.| ..-|+++.|+|++.+++|+|.|.+|++|..........
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 99999999999999999999886543222 123678 88999999999999999999999999999986622111
Q ss_pred ---------eeeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 326 ---------WQIYSLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 326 ---------~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
..+.+.+....-....++.+.-.|.|.+|...
T Consensus 659 a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 11111111111122245556678999999976
No 115
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.4e-25 Score=187.74 Aligned_cols=278 Identities=17% Similarity=0.224 Sum_probs=211.0
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCC-CCCeeEEEEcCCCCeEEEEeC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..|..+.|+|.+.+ .++..|.++ +..| +..+..+.+ ....++.+ ...|.|++|.++|+ +++|..
T Consensus 201 e~v~~a~FHPtd~n-liit~Gk~H--------~~Fw--~~~~~~l~k---~~~~fek~ekk~Vl~v~F~engd-viTgDS 265 (626)
T KOG2106|consen 201 EVVFLATFHPTDPN-LIITCGKGH--------LYFW--TLRGGSLVK---RQGIFEKREKKFVLCVTFLENGD-VITGDS 265 (626)
T ss_pred ceEEEEEeccCCCc-EEEEeCCce--------EEEE--EccCCceEE---EeeccccccceEEEEEEEcCCCC-EEeecC
Confidence 34678899998876 556666554 4455 444443322 11223333 26799999999984 779999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee----------------
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---------------- 147 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---------------- 147 (392)
+|.|.||+..+.+...... .|.+.|.+++...+|. |++|+.|..|..||-. .+..
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~-------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVH-------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CceEEEEeCCCceEEeEee-------ecCCceEEEEEecCcc-EeecCccceEEecccc-ccccccccCchhcCCeeEEe
Confidence 9999999986655433322 3889999999999995 5559999999999831 1110
Q ss_pred -------------------------ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEE
Q 016257 148 -------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (392)
Q Consensus 148 -------------------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~ 202 (392)
....+|..+...++.+|+.+++++++.|+.+++|+ ..+...+.. ...++.+
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~ 412 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAEC 412 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeE
Confidence 01134445677899999999999999999999999 444444333 3447899
Q ss_pred EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeee
Q 016257 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHW 281 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 281 (392)
+.|+|.| . ++.+...|...+.|.++...+..... ..++++++|+|+|.+||.|+.|+.|+||.+.... ....
T Consensus 413 ~~fhpsg-~-----va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 413 ADFHPSG-V-----VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred eeccCcc-e-----EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 9999999 4 79999999999999999766655554 8899999999999999999999999999987644 4444
Q ss_pred eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
....+ .++|+.+.||+|+++|.+-+.|-.|..|.-.
T Consensus 486 ~~k~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 486 VGKCS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred eeeec-CceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 44555 6999999999999999999999999999444
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=202.98 Aligned_cols=290 Identities=15% Similarity=0.190 Sum_probs=218.2
Q ss_pred eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-----------CC
Q 016257 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-----------GD 76 (392)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------~~ 76 (392)
..+.|.+..+.+.. +++ +..+.+|+++...+ . -....+--|...|+.+.--|- ..
T Consensus 328 IA~~Fdet~~klsc-VYn--------dhSlYvWDvrD~~k----v-gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~ 393 (1080)
T KOG1408|consen 328 IACQFDETTDKLSC-VYN--------DHSLYVWDVRDVNK----V-GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG 393 (1080)
T ss_pred eEEEecCCCceEEE-EEc--------CceEEEEecccccc----c-cceeeeeeccceeeeeccccccccCcccccCCcc
Confidence 45778887776443 332 44577888764321 1 112234457888888776551 12
Q ss_pred eEEEEeCCCeEEEEEEeCCccce----eeccc--------------------------cCCCCCCCCCeEEEEecCCCCE
Q 016257 77 DFVCSTTNGGCKLFEVYGGATDI----NLLAK--------------------------KMPPLQDAGPQKCLSFSVDGSR 126 (392)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~----~~~~~--------------------------~~~~~~~~~~v~~~~~s~~~~~ 126 (392)
.+++++.|++|++|++....... .+... ..........+.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 58899999999999997632100 00000 0011223457899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC---CCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceE-
Q 016257 127 FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIE- 201 (392)
Q Consensus 127 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~- 201 (392)
|++|..-|++++|++.+.+....+..|...|.++.|+. ..++|++++.|+-|.|||+...- .++++..| ...|+
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H-SssITs 552 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH-SSSITS 552 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc-ccceeE
Confidence 99999999999999999888888888888999999986 35789999999999999986432 22222222 22344
Q ss_pred ------------------------------------------------EEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 202 ------------------------------------------------LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 202 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
.++..|..++ +++++.|..|+|||+.+
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-----v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-----VVTVCQDRNIRIFDIES 627 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce-----EEEEecccceEEEeccc
Confidence 4555555544 68999999999999999
Q ss_pred ceeeeeecc---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 234 WNKIGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 234 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
++..+.+++ |++..-.+...|.|.|+|+.+.|.++.++|..+++++... .+| ...|+.+.|.+|-++|++.+.||
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GH-sE~VTG~kF~nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGH-SEAVTGVKFLNDCKHLISVSGDG 705 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCc-chheeeeeecccchhheeecCCc
Confidence 999888865 4566778899999999999999999999999999998877 589 99999999999999999999999
Q ss_pred eEEEEEeec
Q 016257 311 GAMITKLTV 319 (392)
Q Consensus 311 ~i~iw~~~~ 319 (392)
.|.||.+..
T Consensus 706 CIFvW~lp~ 714 (1080)
T KOG1408|consen 706 CIFVWKLPL 714 (1080)
T ss_pred eEEEEECch
Confidence 999999864
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-27 Score=209.78 Aligned_cols=292 Identities=15% Similarity=0.162 Sum_probs=219.0
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC---CCeeEEEEcC-CCCeEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE---GDPMTIAVNP-SGDDFV 79 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~sp-~~~~l~ 79 (392)
.++...++-+++.. .+++.|.. .+.+|.+.+..... .+...++... -.+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~--qiv~AGrs--------~lklyai~~~~~~~----~~~~~~k~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDIN--QIVVAGRS--------LLKLYAINPNDFSE----KCNHRFKTKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcc--eeEEeccc--------ceeeEeeCcccCCc----ceeeecccccceeeehhhcccccchhhhhe
Confidence 45566666666553 35554444 36688887665433 2223333222 2456778875 567999
Q ss_pred EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (392)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 158 (392)
+++..|.|.+||+........+ ....+|...++++.|++ ...+|++|+.||.|++||++..+....+......|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLL----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred eecCCCcEEEEecCccccchhh----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 9999999999999763111111 11224889999999998 677899999999999999999888877888777999
Q ss_pred EEEecC-CCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257 159 DMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (392)
Q Consensus 159 ~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 236 (392)
++.|+| .+..++++...|.+++||++... +...+.. |.++|.++.|+|++.+ +++|+.|+.|+|||+.+.+.
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCCce-----eeecCCCccEEEEeccCCCc
Confidence 999999 67789999999999999999754 4444444 4569999999998887 89999999999999986554
Q ss_pred eeeecc-cCCCcEEEEECCCCC-EEEEEe--CCCcEEEEecCCceeeeeeeccccCcceEEEEEee-CCCeEEEEeCCCe
Q 016257 237 IGHKRL-LRKPASVLSISLDGK-YLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWG 311 (392)
Q Consensus 237 ~~~~~~-~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~ 311 (392)
...... ...++..+.|-|... +||+++ .|-.|+|||++..-.+......| ...++.++|.. |...+.+++.||.
T Consensus 255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccH
Confidence 322222 256899999999765 466665 47789999999888777766788 89999999976 4457889999999
Q ss_pred EEEEEeecC
Q 016257 312 AMITKLTVP 320 (392)
Q Consensus 312 i~iw~~~~~ 320 (392)
+....++..
T Consensus 334 v~qh~~kna 342 (839)
T KOG0269|consen 334 VLQHLFKNA 342 (839)
T ss_pred HHHhhhhcc
Confidence 987766544
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=184.52 Aligned_cols=289 Identities=12% Similarity=0.145 Sum_probs=230.7
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (392)
.+...+.||.+.|+.++.......+.+++.|.+.+||.++++.+...+.. |.+.|++++|++.+.++++++.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-------H~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-------HTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-------cccceeeEEeccccceEEEccCC
Confidence 34556889999999999987777899999999999999999998766543 88999999999999999999999
Q ss_pred CcEEEEeC------CC------------------------------C----ceeecccCCCCcEEEEEecCCCCeEEEEc
Q 016257 134 GHLRIMHW------PS------------------------------L----RIILDEPKAHKSVLDMDFSLDSEFLATTS 173 (392)
Q Consensus 134 g~i~i~d~------~~------------------------------~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 173 (392)
++..||.. .. + .++..+.+|...|.+..|-..|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999951 10 0 01233456667888899999999999999
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEEE
Q 016257 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSI 252 (392)
Q Consensus 174 ~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~ 252 (392)
.|.+..+||+++++.+..+.+|.. ..+.++-+|..+. +++++.|.+.++||++.. ..+..+.+|...|+++.|
T Consensus 292 WDRTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQrL-----VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQRL-----VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred ccccceeeeeccCceeccccCcch-hccccccCCcceE-----EEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 999999999999999999987754 6888888998886 799999999999999843 346778999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCcee-eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc--c---ce
Q 016257 253 SLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW--K---EW 326 (392)
Q Consensus 253 s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~---~~ 326 (392)
..+ ..+++|+.|.+|++||+++... +..+.. .++++.++.+..++.|+.--++..|++||++...-. + ..
T Consensus 366 ~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 366 NTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ecC-CceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 866 4678999999999999998653 444422 689999999988889999888999999999854221 1 00
Q ss_pred eeeeeeeee----eeeceEEEEeeecceeeeeccccc
Q 016257 327 QIYSLLLAL----FLASAVVFYIFFENSDSFWNFPVA 359 (392)
Q Consensus 327 ~~~~~~~~~----~~~~~~~~~~~~d~~i~~W~~~~~ 359 (392)
....+..+. .....-++++++|..+.=|.+.+.
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 111111111 122356789999999999998754
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.4e-24 Score=188.38 Aligned_cols=263 Identities=16% Similarity=0.210 Sum_probs=191.8
Q ss_pred cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (392)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
++.+.+|+.+. ......+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+. ..
T Consensus 10 d~~v~~~d~~t--------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------~~ 72 (300)
T TIGR03866 10 DNTISVIDTAT--------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------SG 72 (300)
T ss_pred CCEEEEEECCC--------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------CC
Confidence 66788887652 22334555543 47789999999876 566788999999998776433221 11
Q ss_pred CCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC-cEEEEECCCCeeeE
Q 016257 113 GPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAWT 190 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~ 190 (392)
..+..++|+|+++.++++ ..++.+++||+++.+.+..+. ....+.+++|+|+++++++++.++ .+.+||.++++...
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 235678999999977655 468999999999877665443 223467899999999999888765 46778998887766
Q ss_pred EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-------CCcEEEEECCCCCEEEEE-
Q 016257 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG- 262 (392)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~- 262 (392)
..... .....++|+|++..+ ++++..++.|++||+++++.+..+..+. .....++|+|++++++++
T Consensus 152 ~~~~~--~~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 152 NVLVD--QRPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred EEEcC--CCccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 55433 246789999999862 2455568999999999987765543221 123468899999986554
Q ss_pred eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE-eCCCeEEEEEeecCccc
Q 016257 263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVPADW 323 (392)
Q Consensus 263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~ 323 (392)
+.++.+.+||+++++...... + ...+.+++|+|+|++|+++ +.+|.|++||+......
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL--V-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE--e-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 456789999999888776543 2 4578999999999998876 46899999999875543
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-25 Score=178.42 Aligned_cols=245 Identities=16% Similarity=0.258 Sum_probs=194.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
.+.|.++.|+|.++.|++++.||.+++|++....... .+.|..++.+++|.++ ..+++|+.||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------heecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence 5689999999999999999999999999998774322 2347889999999874 478999999999999999
Q ss_pred CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (392)
Q Consensus 143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
+++.. .+..|..+|.++..++....+++|+.|++|++||.+.......+... ..|.++....+ . ++.+..
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v~g~--~-----LvVg~~ 153 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDVSGN--R-----LVVGTS 153 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEeccCC--E-----EEEeec
Confidence 87764 45677789999999998889999999999999999975555555433 36887776544 3 788899
Q ss_pred ccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---eeeeeecccc--------Cc
Q 016257 223 KALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---INHWSKRLHL--------GT 289 (392)
Q Consensus 223 d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--------~~ 289 (392)
+..+.+||+++.....+. ...+..++++++-|++.=.++++-||.|.+=.++..+ ..+...+.|. ..
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 999999999987654322 2345688999999998889999999998876555441 1111113331 34
Q ss_pred ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce
Q 016257 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW 326 (392)
Q Consensus 290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 326 (392)
+|++++|+|--..|+||+.||.|-+||+...+.+...
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence 8999999999999999999999999999987766544
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=7.7e-25 Score=184.71 Aligned_cols=317 Identities=13% Similarity=0.202 Sum_probs=228.9
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d 84 (392)
-.|.|++|++.+..-.+.+.-.+ .+..+.+|+|...... ...+...+.|....|+|.+..|+.....
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s-----~~h~lSVWdWqk~~~~--------~~vk~sne~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDS-----NPHMLSVWDWQKKAKL--------GPVKTSNEVVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred ccceeeeecccCCCceEEEecCC-----Cccccchhhchhhhcc--------CcceeccceEEEEEeccCCCcEEEEeCC
Confidence 45899999996544234443322 4677889999844322 2233346788999999977766665667
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 164 (392)
+.+.+|+.+.+....+.-..+. .....|.|++|.++|+ +++|..+|.|.||+..+.+...+...|.+.|.+++.-.
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek---~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEK---REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred ceEEEEEccCCceEEEeecccc---ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence 7899999988765443322111 1237899999999995 67899999999999988887777778888999999999
Q ss_pred CCCeEEEEcCCCcEEEEECCCCee-----------eEE-----------------------------EecCCCcceEEEE
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVA-----------WTF-----------------------------LTRNSDEKIELCR 204 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~-----------------------------~~~~~~~~v~~~~ 204 (392)
+|.+| +|+.|+.|..||-.-.+. +++ .+.| ......++
T Consensus 298 ~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla 375 (626)
T KOG2106|consen 298 DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLA 375 (626)
T ss_pred CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEE
Confidence 98755 599999999998321110 011 1112 22466788
Q ss_pred ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 284 (392)
.+|+... +++++.|+.+++|+ ..++. -.+....+..++.|+|.| .+|.|+..|...+.|.++...+..-.
T Consensus 376 ~hps~~q-----~~T~gqdk~v~lW~--~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~- 445 (626)
T KOG2106|consen 376 THPSKNQ-----LLTCGQDKHVRLWN--DHKLE-WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT- 445 (626)
T ss_pred cCCChhh-----eeeccCcceEEEcc--CCcee-EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-
Confidence 8888887 79999999999999 22333 223346788999999999 99999999999999999966665432
Q ss_pred cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc-c---------ceeeeeeeeeeeeeceEEEEeeecceeeee
Q 016257 285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW-K---------EWQIYSLLLALFLASAVVFYIFFENSDSFW 354 (392)
Q Consensus 285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W 354 (392)
. ..+++.++|+|+|.+||.|+.|+.|+||.+...... . ..++.++. .+..+.+.+.|-.|-+|
T Consensus 446 -d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-----Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 446 -D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-----DSQFLVSNSGDYEILYW 518 (626)
T ss_pred -c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-----CCceEEeccCceEEEEE
Confidence 2 689999999999999999999999999999754321 1 11222333 33444555568899999
Q ss_pred ccc
Q 016257 355 NFP 357 (392)
Q Consensus 355 ~~~ 357 (392)
.-.
T Consensus 519 ~~~ 521 (626)
T KOG2106|consen 519 KPS 521 (626)
T ss_pred ccc
Confidence 433
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-25 Score=177.46 Aligned_cols=272 Identities=13% Similarity=0.136 Sum_probs=204.1
Q ss_pred eEEEEeCCCeEEEEEEeCCc----cceee-ccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc
Q 016257 77 DFVCSTTNGGCKLFEVYGGA----TDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (392)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~----~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 151 (392)
.|++|+....|.-+++.... ...+. ....+....|.+++++++.+ +.++++|+.|.+|+|||++.......+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 36677777777666664332 00010 11112233488999999985 8899999999999999999998888888
Q ss_pred CCCCcEEEEEecCCCC--eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 152 KAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 152 ~~~~~i~~i~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-+.+..+..|.. .|+.++.+|.++. .++-+.|+.+++|
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KL-----ALsVg~D~~lr~W 154 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKL-----ALSVGGDQVLRTW 154 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCce-----EEEEcCCceeeee
Confidence 8999999999998654 899999999999999999999999988766 5999999999996 7888999999999
Q ss_pred eCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
|+-.++.-..... ....+.+.|+|.|.+++.+..++ |-||.+.+.++...+.. ...+.++.|- ++..|++|++|
T Consensus 155 NLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 155 NLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred hhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCC
Confidence 9988876544433 33445599999999999988764 99999998877665532 3457777776 56689999999
Q ss_pred CeEEEEEeecCccccce-eeeeeeeeeee----eceEEEEeeecceeeeecccccccc
Q 016257 310 WGAMITKLTVPADWKEW-QIYSLLLALFL----ASAVVFYIFFENSDSFWNFPVARNQ 362 (392)
Q Consensus 310 g~i~iw~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~d~~i~~W~~~~~~~~ 362 (392)
+.|++||.+....+... .....+-.... ....+.+++.||.|++||+......
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 99999999854332211 00001111111 1247788889999999999877443
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=190.78 Aligned_cols=223 Identities=21% Similarity=0.254 Sum_probs=188.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
.++|.+++-+|+|.+|+.|+..|.+++|.+.++.....+. .|..+|+++.|+-||.+|++|+.||.|.+|.+-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------hhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 5789999999999999999899999999999998655442 377899999999999999999999999999862
Q ss_pred ---------CCceeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257 143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 143 ---------~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
+-++...+..|.-+|+++...+. ..++++++.|.++++||+..+..+.++..+. .+.+++.+|.+..
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~--si~av~lDpae~~ 231 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS--SIKAVALDPAERV 231 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC--cceeEEEcccccE
Confidence 22344555566669999988764 4689999999999999999999988887553 7999999999997
Q ss_pred ceEEEEEEeCCccEEEEEeCCCce----------------eeeeecccCC--CcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDV 273 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~----------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 273 (392)
++.|+.+|.|.+.++.... .+..+.+|.+ +|+|++++-||.+|++|+.||+++|||+
T Consensus 232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 7899999999998876432 2344566766 9999999999999999999999999999
Q ss_pred CCceeeeeeeccccCcceEEEEEeeCCC
Q 016257 274 KKMEINHWSKRLHLGTSIALVEFCPTQR 301 (392)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 301 (392)
.+.++++.+.. ..++|+.+.+.|-.+
T Consensus 307 ~S~Q~iRtl~~--~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 307 YSKQCIRTLQT--SKGPVTNLQINPLER 332 (476)
T ss_pred chHHHHHHHhh--hccccceeEeecccc
Confidence 99999887642 278999999977544
No 124
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=196.88 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=141.6
Q ss_pred cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-
Q 016257 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~- 234 (392)
.+.+++.+|+|++|++|..-|+++||++...+....+..| +..|.|+.|+......- .+++++.|..|.|||....
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~~~~k--LLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPVLTNK--LLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc-cceeEEEeecCchhhhH--hhhhccCCceEEEEeccccc
Confidence 4667777777777777777777777777666666556555 45799999986422111 1799999999999998642
Q ss_pred eeeeeeccc-------------------------------------------------CCCcEEEEECCCCCEEEEEeCC
Q 016257 235 NKIGHKRLL-------------------------------------------------RKPASVLSISLDGKYLAMGSKD 265 (392)
Q Consensus 235 ~~~~~~~~~-------------------------------------------------~~~v~~~~~s~~~~~l~~~~~d 265 (392)
.+++++..| ...+..++..|..+++++++.|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 111122222 2345577778888899999999
Q ss_pred CcEEEEecCCceeeeeeecccc-CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceE
Q 016257 266 GDICVVDVKKMEINHWSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAV 341 (392)
Q Consensus 266 g~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~ 341 (392)
..|+|||+++++..+.+...|. ++..-.+...|.|-||++.+.|.++.++|+-.++-.... .....-..+......
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence 9999999999999888764331 577888999999999999999999999999876543211 111111222223446
Q ss_pred EEEeeecceeeeecccc
Q 016257 342 VFYIFFENSDSFWNFPV 358 (392)
Q Consensus 342 ~~~~~~d~~i~~W~~~~ 358 (392)
+++++.|+.|.+|.++.
T Consensus 698 lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred heeecCCceEEEEECch
Confidence 77778899999999865
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.1e-27 Score=205.62 Aligned_cols=250 Identities=14% Similarity=0.179 Sum_probs=193.8
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCC
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~ 142 (392)
....++...++-..++.+++.- ++||.+..................-...+..+.|+. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~-lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSL-LKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecccc-eeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 4566777888888888877654 888887655432222111111111223566788876 67799999999999999997
Q ss_pred C---CceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 143 S---LRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 143 ~---~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
. .+.+..+..|...+.+++|++ ...+|++|+.||+|++||++..+...++....+ .|+.++|+|..... ++
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE-SiRDV~fsp~~~~~----F~ 193 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE-SIRDVKFSPGYGNK----FA 193 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch-hhhceeeccCCCce----EE
Confidence 6 445556677878999999998 456899999999999999999988888877544 79999999986542 68
Q ss_pred EeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257 219 QRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 297 (392)
++.+.|.+.+||+|... +...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+...... .+...++..++|-
T Consensus 194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-InTiapv~rVkWR 272 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-INTIAPVGRVKWR 272 (839)
T ss_pred EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-Eeecceeeeeeec
Confidence 88899999999999754 456778999999999999999999999999999999998765433332 2227899999999
Q ss_pred eCCC-eEEEEe--CCCeEEEEEeecC
Q 016257 298 PTQR-VVLTAS--KEWGAMITKLTVP 320 (392)
Q Consensus 298 ~~~~-~l~~~~--~dg~i~iw~~~~~ 320 (392)
|..+ .|++++ .|-.|+|||++.+
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccc
Confidence 9877 456554 4789999999854
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.7e-25 Score=195.40 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=210.2
Q ss_pred cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeE-EEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (392)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (392)
++++++|.-..+ .......+.+|.+-|.+ +++-+ ++-.+++|+.|..+.+|...+......+. .|
T Consensus 34 d~t~~vw~~~~~------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-------gH 100 (745)
T KOG0301|consen 34 DGTVKVWAKKGK------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-------GH 100 (745)
T ss_pred CCceeeeeccCc------ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-------cc
Confidence 677888875322 22223557778887777 88876 44469999999999999998877554443 38
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 191 (392)
...|.++....++. +++|+-|.++++|.. +++.....+|...|.++..-|++ .+++|+.|.+|++|.- ++.+++
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t 174 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT 174 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh
Confidence 89999999888886 999999999999975 45555688898999999999987 8999999999999975 778888
Q ss_pred EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (392)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 271 (392)
+.+|.+ .|+.+++-+++. +++++.||.|++|++ +++.+..+.+|..-+.+++..+++..++++++|++++||
T Consensus 175 f~gHtD-~VRgL~vl~~~~------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 175 FSGHTD-CVRGLAVLDDSH------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred hccchh-heeeeEEecCCC------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEe
Confidence 888654 799999999988 699999999999999 678888999999999999988888999999999999999
Q ss_pred ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 272 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
+.. ++.+.+ .|+...|+++.+-++|. |++|+.||.||||...
T Consensus 247 ~~~--e~~q~I--~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 247 KKD--ECVQVI--TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ecC--ceEEEE--ecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 977 555554 23266899999998887 7788999999999887
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=178.73 Aligned_cols=277 Identities=14% Similarity=0.137 Sum_probs=196.1
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 016257 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (392)
Q Consensus 66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 145 (392)
..|+.|++.|.+||+|+.||.|.|||+.+......+. .|..+|.+++||+||++|++++.|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-------ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 8899999999999999999999999999877433322 377899999999999999999999999999999998
Q ss_pred eeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEec-CC----CcceEEEEecCCCCcceEEEEEE
Q 016257 146 IILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NS----DEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 146 ~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
+..++ ....+|..+.|+|..+ ..++.-.+..-.+-++..++ +++.. .. +....+..|.+.|++ +++
T Consensus 99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~y-----Iit 170 (405)
T KOG1273|consen 99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKY-----IIT 170 (405)
T ss_pred ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCE-----EEE
Confidence 76544 4567899999999543 33333334445566665432 22211 11 112234468889997 899
Q ss_pred eCCccEEEEEeCCCceeeeeecccC-CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc-------eee--eeeeccccCc
Q 016257 220 RGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKM-------EIN--HWSKRLHLGT 289 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~ 289 (392)
|...|.+.+||..+.+++..++... ..|..+.++..|++|++-+.|..|+.|+++.- ++. +.+...-...
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999988887766 78999999999999999999999999998731 111 1111111133
Q ss_pred ceEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeee---eeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 290 SIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIY---SLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 290 ~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
.=.+++|+.+|.++++++. -..++||.-..+.-.++.+-. ...+.........+.....|.+++|...
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence 4567889999999887764 468999988766444332110 0111111111122222257899999865
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.7e-25 Score=175.61 Aligned_cols=256 Identities=15% Similarity=0.125 Sum_probs=190.8
Q ss_pred eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEE
Q 016257 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLR 137 (392)
Q Consensus 60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~ 137 (392)
.+|.+-|.++.|.+.|+.+|+++.|++++|||.............- -.|.+.|..+.|.+ -|+.+|+++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCcee
Confidence 5789999999999999999999999999999986554433332211 13789999999966 589999999999999
Q ss_pred EEeCCC---------CceeecccCCCCcEEEEEecC--CCCeEEEEcCCCcEEEEECCCCeeeEEEe------------c
Q 016257 138 IMHWPS---------LRIILDEPKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLT------------R 194 (392)
Q Consensus 138 i~d~~~---------~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------------~ 194 (392)
||.-.. ......+......|+++.|.| -|-.|++++.||.++||+.-+...+..+. .
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 112233445566899999999 46689999999999999976543333221 1
Q ss_pred CCCcceEEEEecCCCCcceEEEEEEeCCc-----cEEEEEeCCCc----eeeeeecccCCCcEEEEECCC----CCEEEE
Q 016257 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW----NKIGHKRLLRKPASVLSISLD----GKYLAM 261 (392)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~----~~~l~~ 261 (392)
.+..+..|+.|+|.....-+ ++.++.+ +.++||..... ..+..+..+..+|++++|.|+ -..||+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 23346789999986543222 4555444 47888865533 345667789999999999996 257999
Q ss_pred EeCCCcEEEEecCCce--------------------eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257 262 GSKDGDICVVDVKKME--------------------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 262 ~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
++.|| |+||.++... .+.. ...| .+.|+.+.|+-.|..|++.|.||.||+|+.+...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~-~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE-LDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee-ccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 99999 9999987311 1111 2568 8899999999999999999999999999887554
Q ss_pred cc
Q 016257 322 DW 323 (392)
Q Consensus 322 ~~ 323 (392)
.+
T Consensus 322 ~~ 323 (361)
T KOG2445|consen 322 LW 323 (361)
T ss_pred hh
Confidence 44
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=185.76 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=190.5
Q ss_pred CeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257 76 DDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (392)
Q Consensus 76 ~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 154 (392)
.+++++. ....+.+|.+........ ..--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhh-------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc
Confidence 5666654 344688999866543221 11135789999999999999998899999999999999998888888
Q ss_pred CcEEEEEecCCCCeEEEEcCCCcEEEEECC---------CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTE---------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (392)
..|+++.|+-|+.+|++|+.||.|.+|.+. +-++.+.+..|. -+|+.+...+.+.... +++++.|.+
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~r---l~TaS~D~t 199 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNAR---LYTASEDRT 199 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-ceeEEEEecCCCccce---EEEecCCce
Confidence 999999999999999999999999999864 235566666554 4799998888754322 799999999
Q ss_pred EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce----------------eeeeeeccccCc
Q 016257 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME----------------INHWSKRLHLGT 289 (392)
Q Consensus 226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~ 289 (392)
+++||+..+..+..+.. +..+.+++.+|-++.+++|+.+|.|.+.++.+.. .... ..+| ..
T Consensus 200 ~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~-~~Gh-~~ 276 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV-LVGH-EN 276 (476)
T ss_pred EEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee-eccc-cC
Confidence 99999999988766553 6789999999999999999999999998875432 1111 2456 44
Q ss_pred --ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc
Q 016257 290 --SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE 325 (392)
Q Consensus 290 --~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 325 (392)
.|+|++.+-||..|++|+.||.++|||+...+-.+.
T Consensus 277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 277 ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 999999999999999999999999999987655443
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.2e-25 Score=197.70 Aligned_cols=245 Identities=11% Similarity=0.152 Sum_probs=203.3
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC-CCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
.|...-+.++|.|+|++|++++.||.|++|+....... ...+. +...|.+++- ++.+|++++.+++|.+|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRY 81 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------CchhhccCceeEEEee--cccceEEeeccceEEEe
Confidence 57888999999999999999999999999998765311 11111 4455666655 45699999999999999
Q ss_pred eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
.+.+++.-..+....-++.+++|+-+|+++|.|+.|-.|++.++.+......+..+ .++|.++.|+|.+.. +++
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~f-----LAv 155 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNF-----LAV 155 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCE-----EEE
Confidence 99887765444455568999999999999999999999999999998888888766 558999999999997 899
Q ss_pred eCCccEEEEEeCCCceeeeeeccc--------CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257 220 RGDKALLAVYDISTWNKIGHKRLL--------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 291 (392)
.+.||.|++||+.++.....+... ...+..++|+|+|..++..+.|+.|++|+..+.+....+...+....+
T Consensus 156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~ 235 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF 235 (933)
T ss_pred EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence 999999999999988765544322 345677999999888888888999999999999888777554435559
Q ss_pred EEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 292 ALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
..+.|+|+|+|||+++.||.|.||+++++
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 99999999999999999999999999964
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.2e-25 Score=184.30 Aligned_cols=281 Identities=16% Similarity=0.204 Sum_probs=216.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW 141 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~ 141 (392)
.+.|+++.|+|....|++++.|++++||.+....... +....+ ...+|.+..|.|+|+ .+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-heeeee----ccCccceeeecCCCceEEEecccceEEEEeec
Confidence 4689999999999999999999999999997654321 111111 246899999999999 8899999999999999
Q ss_pred CCCceee--cccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 142 PSLRIIL--DEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 142 ~~~~~~~--~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
++.+... ...+.. ..+.....++++++|+..+..|.|.+....+++.+.++... +.+..++|+.+++. ++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~-----l~ 360 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKE-----LL 360 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcE-----EE
Confidence 8876532 222222 25778889999999999999999999999999998888743 47999999999987 78
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCCCCEEEEEeCCCcEEEEecCC------ceeeeeeeccccCcce
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKK------MEINHWSKRLHLGTSI 291 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~i 291 (392)
.++.+|.|.+||++...++..+....+ .-++++.|+++.+||+|+..|.|.|||.++ .+++..+.. ....|
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~I 438 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--LTTAI 438 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--hheee
Confidence 888899999999999988877765432 346788889999999999999999999754 233333321 26789
Q ss_pred EEEEEeeCCCeEEEEeC--CCeEEEEEeecCccccceeeee-----eee-eeeeeceEEEEeeecceeeeeccc
Q 016257 292 ALVEFCPTQRVVLTASK--EWGAMITKLTVPADWKEWQIYS-----LLL-ALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 292 ~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
+++.|++|+++|+.+|. +..+++-.+.....++.|...- ... .+...++.++.+.-++++.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999888775 6789998887766666553221 111 112234566666678999999874
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=4.9e-25 Score=183.71 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=213.4
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-CCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~ 82 (392)
.++|+|++|+|...+ .+|+.|+..| .|-+|+++...+ ...-...+..|..+|.++.|+|. ...+++.+
T Consensus 186 ~~Rit~l~fHPt~~~-~lva~GdK~G------~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 186 DRRITSLAFHPTENR-KLVAVGDKGG------QVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ccceEEEEecccCcc-eEEEEccCCC------cEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeec
Confidence 578999999998765 6888888754 488999963222 12223557889999999999994 45888999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEEE
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD 161 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~ 161 (392)
.||+|+.-|++.......+... ........+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~-----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLD-----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred cCceeeeeeecchhhHHHhhcC-----ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999887532222111 1344677888988887888887778999999998765 444455666999999
Q ss_pred ecCCC-CeEEEEcCCCcEEEEECCCCeeeEE---EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC----C
Q 016257 162 FSLDS-EFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----T 233 (392)
Q Consensus 162 ~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~----~ 233 (392)
++|-. .+|++++.|++.+|||++.-..... ....|...|.+..|||.+.. +++.+.|..|+|||.. .
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-----eEeeccCCceEEeeccccccc
Confidence 99954 5799999999999999986433321 12234558999999999887 7999999999999984 2
Q ss_pred ceeeeeec---ccCCC--cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE-EEEeeCCCeEEEE-
Q 016257 234 WNKIGHKR---LLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTA- 306 (392)
Q Consensus 234 ~~~~~~~~---~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~- 306 (392)
..+...+. .+... .....|.|+..++++|..-..|-|+|-..++.+..+.... ...|.+ ..|+|-+..+++|
T Consensus 405 ~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 405 DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeecccccceeccC
Confidence 22222221 11122 2346899999999999999999999999988766553332 334544 4799988855555
Q ss_pred eCCCeEEEEEee
Q 016257 307 SKEWGAMITKLT 318 (392)
Q Consensus 307 ~~dg~i~iw~~~ 318 (392)
+..|.|.||.-+
T Consensus 484 ~s~Gki~vft~k 495 (498)
T KOG4328|consen 484 NSSGKIYVFTNK 495 (498)
T ss_pred CccceEEEEecC
Confidence 556888887543
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.6e-27 Score=207.57 Aligned_cols=236 Identities=18% Similarity=0.271 Sum_probs=212.2
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 138 (392)
+..|...|.++..-..++.+++|+.|..+-+|.+........+ ..|..+|.++.|+++..+|++|+.+|+|++
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-------~~hespIeSl~f~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-------TGHESPIESLTFDTSERLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-------eccCCcceeeecCcchhhhcccccCCceee
Confidence 4568889999998778889999999999999998766544332 248899999999999999999999999999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
||++..+.+..+.+|...+.++.|+|-+.+.+.++.|..+++||++...+.+.+..|. ..+..++|+|+|.+ ++
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv~~l~lsP~Gr~-----v~ 170 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVVDVLRLSPDGRW-----VA 170 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-ceeEEEeecCCCce-----ee
Confidence 9999999999999999999999999999999999999999999999888988888754 47999999999998 79
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
.+++|..+++||+..++....+..|...+..+.|+|..-+++.|+.|+++++||+++.+.+..... . ...|.+.+|+|
T Consensus 171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-~-~~~v~~~~fn~ 248 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-E-TDGVRSLAFNP 248 (825)
T ss_pred ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-c-cCCceeeeecC
Confidence 999999999999999999999999999999999999999999999999999999999988876633 3 67899999999
Q ss_pred CCCeEEEEeCC
Q 016257 299 TQRVVLTASKE 309 (392)
Q Consensus 299 ~~~~l~~~~~d 309 (392)
++..+++|..+
T Consensus 249 ~~~~~~~G~q~ 259 (825)
T KOG0267|consen 249 DGKIVLSGEQI 259 (825)
T ss_pred CceeeecCchh
Confidence 99999888766
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.5e-24 Score=188.09 Aligned_cols=333 Identities=13% Similarity=0.123 Sum_probs=231.4
Q ss_pred eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC---eEEEEeCC
Q 016257 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTN 84 (392)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~~d 84 (392)
.|++..|+... .+++.|+. +..+.++....+ .-.....+.||.+.|.+++|...+. +||+++.|
T Consensus 149 LcL~~~~~~~~-~lla~Ggs------~~~v~~~s~~~d------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD 215 (764)
T KOG1063|consen 149 LCLAALKNNKT-FLLACGGS------KFVVDLYSSSAD------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQD 215 (764)
T ss_pred HHHhhhccCCc-EEEEecCc------ceEEEEeccCCc------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCc
Confidence 46777774444 66777666 444666655411 3345678999999999999987443 78899999
Q ss_pred CeEEEEEEeCCccce---------------------eec---cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257 85 GGCKLFEVYGGATDI---------------------NLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~---------------------~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 140 (392)
..|+||.+.-..... .+. ..+.-...|...|.++.|+|.+..|++++.|.++.+|.
T Consensus 216 ~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~ 295 (764)
T KOG1063|consen 216 RYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWK 295 (764)
T ss_pred eEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEe
Confidence 999999986443111 000 00112246899999999999999999999999999998
Q ss_pred CCCCc--e-----eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-e-EEEecCCCcceEEEEecCCCCc
Q 016257 141 WPSLR--I-----ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-W-TFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 141 ~~~~~--~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
..+.. - +..+.+......+..|+|+++.+++-+..|..++|..++... . .....+|-..|..++|+|.|.+
T Consensus 296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef 375 (764)
T KOG1063|consen 296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF 375 (764)
T ss_pred cCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCE
Confidence 76542 1 111222234688999999999999999999999998333211 1 1122334447999999999986
Q ss_pred ceE-----------------------------------------EEEEEeCCccEEEEEeCCC-----------------
Q 016257 212 PFL-----------------------------------------FCTVQRGDKALLAVYDIST----------------- 233 (392)
Q Consensus 212 ~~~-----------------------------------------~~~~~~~~d~~i~v~d~~~----------------- 233 (392)
++. .-++++.+...+++|+...
T Consensus 376 lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~ 455 (764)
T KOG1063|consen 376 LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGS 455 (764)
T ss_pred EEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCc
Confidence 210 0012333334444444321
Q ss_pred --------------------------c---------------------------------eeeeeecccCCCcEEEEECC
Q 016257 234 --------------------------W---------------------------------NKIGHKRLLRKPASVLSISL 254 (392)
Q Consensus 234 --------------------------~---------------------------------~~~~~~~~~~~~v~~~~~s~ 254 (392)
+ ..+..+.+|...|.+++.+|
T Consensus 456 ~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~ 535 (764)
T KOG1063|consen 456 DELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP 535 (764)
T ss_pred hhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC
Confidence 0 00223456778899999999
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc--------
Q 016257 255 DGKYLAMGSKDG-----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA-------- 321 (392)
Q Consensus 255 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------- 321 (392)
+|+++|+++... .|++|+..+....+.+ .+| .-.|+.++|||||++|++.+.|.++.+|......
T Consensus 536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-~~H-sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~ 613 (764)
T KOG1063|consen 536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-EGH-SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC 613 (764)
T ss_pred CCCEEeehhhhCCccceEEEEEeccchhhhhee-ccc-ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc
Confidence 999999998653 4999999988777755 688 9999999999999999999999999999885331
Q ss_pred ----cccceeeeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257 322 ----DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR 360 (392)
Q Consensus 322 ----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~ 360 (392)
...+|...+.+..+. .++++.|.+|.+|..+..+
T Consensus 614 ~k~HtRIIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 614 LKAHTRIIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLR 651 (764)
T ss_pred ccccceEEEEcccCcccce-----eEEecCCceEEEEeccCch
Confidence 112444444444443 5666779999999998773
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=194.79 Aligned_cols=273 Identities=19% Similarity=0.211 Sum_probs=213.3
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
.+.++|.|+++ .+++ .++++.|++|.-..+.. .|. .+.-+...|.+++. ++.+|++|+.+++
T Consensus 16 ~t~i~~d~~ge--fi~t-------cgsdg~ir~~~~~sd~e----~P~---ti~~~g~~v~~ia~--~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 16 LTLICYDPDGE--FICT-------CGSDGDIRKWKTNSDEE----EPE---TIDISGELVSSIAC--YSNHFLTGSEQNT 77 (933)
T ss_pred eEEEEEcCCCC--EEEE-------ecCCCceEEeecCCccc----CCc---hhhccCceeEEEee--cccceEEeeccce
Confidence 67789999986 2444 34567788887653311 111 12226778888876 4559999999999
Q ss_pred EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC
Q 016257 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS 166 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~ 166 (392)
|.+|...+++....+.. ..-++++++|+-+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|.+
T Consensus 78 v~~y~fps~~~~~iL~R-------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILAR-------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred EEEeeCCCCCccceeee-------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 99999988764322221 24578999999999999999999999999999988888899999999999999999
Q ss_pred CeEEEEcCCCcEEEEECCCCeeeEEEecC-------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257 167 EFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (392)
Q Consensus 167 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 239 (392)
++||+.+.||+|++||++++....++..- ....+..++|+|++.. ++....|+.|++|+...+.....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceehee
Confidence 99999999999999999998877666431 1235678999999776 68888899999999999988766
Q ss_pred ecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257 240 KRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (392)
Q Consensus 240 ~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 315 (392)
+.. +...+.+++|+|+|+|||+++.||.|.|||.++.+. ... ...|.+++|.|+...+-.-...|...+|
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~-~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEF-KRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccc-cceeEEEecCCCCCeeEEEeeccccccC
Confidence 653 334589999999999999999999999999998332 112 6789999999998866555444444433
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-24 Score=167.61 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=179.5
Q ss_pred CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCC
Q 016257 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (392)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (392)
.++|+.|+||....++. ..+..+|.||+++|..++|-. .|.+||+++.||.|.||.-++++-... ...
T Consensus 29 csSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~-----~e~ 98 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA-----YEH 98 (299)
T ss_pred ecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh-----hhh
Confidence 45688899999986642 356678999999999999954 789999999999999999887753222 222
Q ss_pred CCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCC-c--eeecccCCCCcEEEEEecCC---C-----------CeE
Q 016257 109 LQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S-----------EFL 169 (392)
Q Consensus 109 ~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~~~i~~i~~~~~---~-----------~~l 169 (392)
..|...|++++|.|. |-.|++++.||.|.|.+.++. . .......|.-.|++++|.|. | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 248899999999994 668999999999999998754 2 12233456568999999985 4 569
Q ss_pred EEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeecccC
Q 016257 170 ATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLLR 244 (392)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~ 244 (392)
++|+.|..|+||+..+++- .+++..| ...|+.++|.|.-... ..++++++.||++.||-.+... ....++...
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~-~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLP-KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCC-ceeeEEecCCCcEEEEEecCccCcccccccccCC
Confidence 9999999999999987632 2334444 5589999999986432 3348999999999999876321 122334456
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 245 KPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
..+..+.||+.|+.|++++.|+++.+|.-.
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 789999999999999999999999999654
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=183.81 Aligned_cols=279 Identities=12% Similarity=0.139 Sum_probs=218.6
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
...|.+++|+.+.+.||.+-.+|.|-||++...-........ ...+.|.+++|++ +..|++.+.+|.|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-----~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-----PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-----CCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 678999999999999999999999999999886544333322 2467899999995 4477888889999999999
Q ss_pred CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeC
Q 016257 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRG 221 (392)
Q Consensus 143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (392)
++++........+.|.+++.+|.+..++.|+.||.+..++...++....... ...+.+.++.|+|++.. ++.|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-----i~~Gs 173 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-----IAGGS 173 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-----EEecc
Confidence 9999988888888999999999999999999999888888877765544322 23468999999999998 89999
Q ss_pred CccEEEEEeCCCceeeeee-----cc---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257 222 DKALLAVYDISTWNKIGHK-----RL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 222 ~d~~i~v~d~~~~~~~~~~-----~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
.||.|++||..++..+... .. ...-|.++.+-.+ ..|++|..-|+|.+||...+.+.+.. ..| ...|.+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h-~adVl~ 250 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSH-SCH-DADVLA 250 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhh-hhh-hcceeE
Confidence 9999999999988776521 11 1223556666544 57899999999999999999988877 578 899999
Q ss_pred EEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee-------eeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY-------SLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
++.++++.++++++.|+.|..+....... .|-.. ............+++++.|..+.+=...
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR 319 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCcc--ceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence 99999999999999999999988876543 13111 1222333344466777777776665443
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.6e-26 Score=209.15 Aligned_cols=301 Identities=18% Similarity=0.198 Sum_probs=225.9
Q ss_pred eeeecCCCCCcceeEEEeCCCCC--C--CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe----E
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSR--A--SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD----F 78 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~--~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~----l 78 (392)
--.++|+|+.. .+++.|...+ . .+.+.++.+|.++....... ......+. -....+.++|.+.|.. |
T Consensus 9 ta~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--lk~~~s~~-s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 9 TATFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--LKPVGSLQ-SSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred cceEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCcccc--cccccccc-ccccceeeeecccCCCcccee
Confidence 34579999884 3555554322 2 25688899999985543321 11111222 2467889999997765 8
Q ss_pred EEEeCCCeEEEEEEeCC--ccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeeccc--CC
Q 016257 79 VCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP--KA 153 (392)
Q Consensus 79 ~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~ 153 (392)
|.|..||.|.+||...- ........ ..-.|.+.|..+.|++. +++||+|+.||.|.|||+...+...... ..
T Consensus 84 aGG~edG~I~ly~p~~~~~~~~~~~la---~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 84 AGGLEDGNIVLYDPASIIANASEEVLA---TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred eccccCCceEEecchhhccCcchHHHh---hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 88999999999998663 11111111 12248999999999995 5599999999999999998765544432 23
Q ss_pred CCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCCC-cceEEEEecCCCCcceEEEEEEeCCc---cEEEE
Q 016257 154 HKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDK---ALLAV 228 (392)
Q Consensus 154 ~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d---~~i~v 228 (392)
.+.|.+++|+.. ...|++++.+|.+.|||++..+++-.+..+.. ..+..++|+|+.... ++++++| -.|.+
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq----l~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ----LLVASGDDSAPVIQL 236 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee----eeeecCCCCCceeEe
Confidence 357999999874 45688999999999999999888777765443 357899999998753 3444433 46999
Q ss_pred EeCCCc-eeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEE
Q 016257 229 YDISTW-NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLT 305 (392)
Q Consensus 229 ~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~ 305 (392)
||+|.. .+++.++.|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.. . ...+..+.|.|... .+++
T Consensus 237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-GNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred ecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-CcceeeeeecCCCcchhhh
Confidence 999864 3566778999999999999966 8899999999999999999999988754 3 78899999999877 8889
Q ss_pred EeCCCeEEEEEeecCc
Q 016257 306 ASKEWGAMITKLTVPA 321 (392)
Q Consensus 306 ~~~dg~i~iw~~~~~~ 321 (392)
++-||.|.|+.+....
T Consensus 315 asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 315 ASFDGKISIYSLQGTD 330 (1049)
T ss_pred heeccceeeeeeecCC
Confidence 9999999999998654
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-24 Score=171.15 Aligned_cols=288 Identities=12% Similarity=0.175 Sum_probs=215.2
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
..|+.|++.+ .++|+|.. ++.+-||+++ +......+.+|..+|.+++||++|+.|++++.|..
T Consensus 26 a~~~~Fs~~G---~~lAvGc~------nG~vvI~D~~--------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWG---DYLAVGCA------NGRVVIYDFD--------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCc---ceeeeecc------CCcEEEEEcc--------ccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 6799999998 45776666 5558899988 33344568899999999999999999999999999
Q ss_pred EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCCCC----cEEEEE
Q 016257 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK----SVLDMD 161 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~i~~i~ 161 (392)
|.+||+..+....++. ..++|..+.|+|. .+..++.-.+..-.+-++...+...--....+ .-.+..
T Consensus 89 i~lwDl~~gs~l~rir--------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR--------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred eEEEeccCCCceeEEE--------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 9999999888655543 3579999999994 33444433444455555544332211111111 123346
Q ss_pred ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce------
Q 016257 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------ 235 (392)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------ 235 (392)
|++.|+++++|...|.+.++|..+.+++..+.......|..+.++..|.. ++..+.|+.|+.|+++.-.
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCccC
Confidence 88999999999999999999999999998887666457999999999997 7889999999999987311
Q ss_pred -e--eeeec--ccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 236 -K--IGHKR--LLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 236 -~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
+ .+.+. .....-.+++||.+|.|++.++. ...++||.-..|.+++.+. +..+.....+.|+|-...+++- ..
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~s 313 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-AS 313 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-cC
Confidence 1 11111 11234557899999999888774 4569999999999998874 4425778899999998888777 77
Q ss_pred CeEEEEEeecCccccce
Q 016257 310 WGAMITKLTVPADWKEW 326 (392)
Q Consensus 310 g~i~iw~~~~~~~~~~~ 326 (392)
|.+++|.......+..+
T Consensus 314 g~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 314 GVVYIWAVVQVENWSAF 330 (405)
T ss_pred CceEEEEeecccchhhc
Confidence 89999999877665544
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1e-24 Score=188.92 Aligned_cols=294 Identities=14% Similarity=0.127 Sum_probs=206.8
Q ss_pred eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 016257 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (392)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i 87 (392)
+++.|++...+-.+++.+.. ++.|.+++..... ..........+..|.+.|..+.|-|....|++++.|.++
T Consensus 53 f~~sFs~~~n~eHiLavadE------~G~i~l~dt~~~~--fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADE------DGGIILFDTKSIV--FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ccccccCCCCccceEEEecC------CCceeeecchhhh--cchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 45778876554456776665 4446666544222 211222223456799999999999966689999999999
Q ss_pred EEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce--------------------
Q 016257 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-------------------- 146 (392)
Q Consensus 88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~-------------------- 146 (392)
++||++..+....- ..++|.+.|.+++|.| |...|++|+.||.|.|||++-...
T Consensus 125 r~Wdvk~s~l~G~~-----~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGR-----LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred eeeeeccceeecce-----eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999988754331 2346899999999999 566889999999999999853220
Q ss_pred -------eecccCCCCcEEE---EEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEe--------cC--CCcceEEEEe
Q 016257 147 -------ILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLT--------RN--SDEKIELCRF 205 (392)
Q Consensus 147 -------~~~~~~~~~~i~~---i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~--------~~--~~~~v~~~~~ 205 (392)
+.....+...|.+ +.+..|...||+++. |+.|+|||++......... .+ ....+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 0001122234544 556678888999887 9999999999765433221 11 0123566667
Q ss_pred cCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCC--cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (392)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 281 (392)
...|.+ +++.+.|+.|+.|++.+... +..+.++... -..-..+|++.++++|+.|...++|.+.+.+....
T Consensus 280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 777787 56666699999999986432 2333322111 11235689999999999999999999999887777
Q ss_pred eeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecC
Q 016257 282 SKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 282 ~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~ 320 (392)
+..+| ...|++++|.|... -++++++|..+++|++...
T Consensus 355 ~l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 77899 99999999988533 4777799999999999643
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.3e-24 Score=169.36 Aligned_cols=212 Identities=16% Similarity=0.176 Sum_probs=171.9
Q ss_pred eCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCcc--ceeecc------ccCCCCCCCCCeEEEEecC-CCCEEEE
Q 016257 60 DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT--DINLLA------KKMPPLQDAGPQKCLSFSV-DGSRFAA 129 (392)
Q Consensus 60 ~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~~ 129 (392)
.-|.+.|+++...+ .|+++++|+.||.|.+||+++... ...+.. .......|.-.|..+.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999988 789999999999999999986541 111111 1122334777899999999 6678999
Q ss_pred EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC---CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEec
Q 016257 130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (392)
Q Consensus 130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 206 (392)
++.|.++++||..+.+....+ ...+.|++-+++|- ..++|+|..|-+|++.|+.+|...+++.+|.+ .|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEec
Confidence 999999999999988776544 44567898899983 45788888999999999999999999998766 69999999
Q ss_pred CCCCcceEEEEEEeCCccEEEEEeCCCc-eee--------------eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257 207 KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 271 (392)
|...++ +++++.||.|++||++.. .+. +.-..|.+.+..++|+.++.++++.+.|.++++|
T Consensus 198 p~~e~v----LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 198 PSSEWV----LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred cCceeE----EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 998863 799999999999999854 121 1123456789999999999999999999999999
Q ss_pred ecCCce
Q 016257 272 DVKKME 277 (392)
Q Consensus 272 d~~~~~ 277 (392)
+..+|+
T Consensus 274 n~~~G~ 279 (397)
T KOG4283|consen 274 NMESGR 279 (397)
T ss_pred ecccCc
Confidence 998875
No 142
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=1.1e-23 Score=166.15 Aligned_cols=298 Identities=11% Similarity=0.126 Sum_probs=214.3
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-----e
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----D 77 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----~ 77 (392)
...+++++.|+.....-.-++.|+-. ....|+|+|..++.++..+..... -.|.-+++.+.|.|+.. +
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~--Ee~~Nkvqiv~ld~~s~e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFI--EEYNNKVQIVQLDEDSGELVEDAN-----FDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeec--cccCCeeEEEEEccCCCceeccCC-----CCCCCCccceEecCCccccCcch
Confidence 35689999999644332457777764 346899999999977655533222 35889999999999763 4
Q ss_pred EEEEeCCCeEEEEEEeCCccce--eeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce---eeccc
Q 016257 78 FVCSTTNGGCKLFEVYGGATDI--NLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI---ILDEP 151 (392)
Q Consensus 78 l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~ 151 (392)
||+ +.|- +++|.+...+... ..........++..++++..|+. |.++|.+.+-|-+..|||++++.. ..++.
T Consensus 116 LAT-s~D~-LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LAT-SSDF-LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhc-ccCe-EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 555 4444 9999997533211 11111222334667999999998 888999999999999999998633 45667
Q ss_pred CCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEec-CC-CcceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257 152 KAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (392)
Q Consensus 152 ~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v 228 (392)
.|.++|.+++|...+ +.+|+.+.||.+++||++..+.-..+.. +. ..+...++|++..... + ...+-....|.+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny-m--ATf~~dS~~V~i 270 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY-M--ATFAMDSNKVVI 270 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH-H--hhhhcCCceEEE
Confidence 888899999999855 5789999999999999997665444432 22 4578889999877652 1 122334567999
Q ss_pred EeCCCc-eeeeeecccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCcee-----eeeeeccccCcceEEEEEeeC-C
Q 016257 229 YDISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEI-----NHWSKRLHLGTSIALVEFCPT-Q 300 (392)
Q Consensus 229 ~d~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~s~~-~ 300 (392)
.|+|.. .++..++.|...|+.++|.|. ...|++++.|..+.|||+..... ...... . ++.|+.+.|++. +
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a-~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-A-GGEVNQIQWSSSQP 348 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-c-cceeeeeeecccCC
Confidence 999864 567889999999999999996 57899999999999999976432 111111 2 679999999974 4
Q ss_pred CeEEEEeCCCeEEEE
Q 016257 301 RVVLTASKEWGAMIT 315 (392)
Q Consensus 301 ~~l~~~~~dg~i~iw 315 (392)
.+++.+.. +++.+.
T Consensus 349 Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 349 DWIAICFG-KKLEIL 362 (364)
T ss_pred CEEEEEec-CeeeEE
Confidence 56766654 455543
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.5e-24 Score=186.48 Aligned_cols=285 Identities=16% Similarity=0.157 Sum_probs=213.7
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC--EEEEEe
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGG 131 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 131 (392)
.+...+.||++.|.++...|.|.+|++|+.||+|+||.+.++.++..... .+.|.|++|+|.+. .||++-
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--------d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--------DSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--------cceeEEEEecCCCCceeEEEEe
Confidence 35667899999999999999999999999999999999999998777653 45899999999665 344443
Q ss_pred CCCcEEEEeCCCCc-------------------------------------eeecccCCCCcEEEEEecCCCCeEEEEcC
Q 016257 132 VDGHLRIMHWPSLR-------------------------------------IILDEPKAHKSVLDMDFSLDSEFLATTST 174 (392)
Q Consensus 132 ~dg~i~i~d~~~~~-------------------------------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 174 (392)
. ..+.|.+..-|. -+.....|...|..+.|+..|.+|++...
T Consensus 463 ~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 463 G-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred c-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 2 234444321110 01122345568999999999999998765
Q ss_pred C---CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEE
Q 016257 175 D---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (392)
Q Consensus 175 d---~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 251 (392)
+ ..|.|.++...+...-|... .+.+.++.|+|...+ ++.++ ...|++||+..+..++.+......|..++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~-----lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSKPY-----LFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMS 614 (733)
T ss_pred CCCcceEEEEecccccccCchhhc-CCceeEEEecCCCce-----EEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence 4 56899999876665555433 347999999999886 33333 56799999999888888877788999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc-------
Q 016257 252 ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK------- 324 (392)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~------- 324 (392)
++|.|..|+.|+.|+++..||+.-..........| ...+++++|++.-.++++|+.||.+.|+.-..-..+-
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 99999999999999999999998765444444678 9999999999999999999999999998544222210
Q ss_pred -----cee----eeeeeeeeeeeceEEEEeeecceeeeec
Q 016257 325 -----EWQ----IYSLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 325 -----~~~----~~~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
... +............-+++++.|++|++|.
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 000 0011111223456789999999999984
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-23 Score=166.49 Aligned_cols=290 Identities=15% Similarity=0.172 Sum_probs=215.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCc----cccCCce---EEEeeCCCCCeeEEEEcC-CC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS----VYTSPLV---TYVFDESEGDPMTIAVNP-SG 75 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~---~~~~~~h~~~v~~~~~sp-~~ 75 (392)
+|.|.++...+...+ ++..|+ +++.|.+|+++..+.. +.....+ ...-.+|.-.|.++.|-| |.
T Consensus 43 gGsvNsL~id~tegr--ymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGR--YMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CCccceeeeccccce--EEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 467777877775544 455444 4777999999744311 1111111 122356888999999999 55
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 152 (392)
-.+.+++.|.+++|||..+.+....+. -.+.|.+-++||- -.++|+|..+-.|++.|+.+|.....+.+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~--------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFK--------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred ceeecccccceEEEeecccceeeEEee--------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 588889999999999999887655543 3457888888883 34788888899999999999999999999
Q ss_pred CCCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCC-eeeEEEec-------------CCCcceEEEEecCCCCcceEEEE
Q 016257 153 AHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDG-VAWTFLTR-------------NSDEKIELCRFSKDGTKPFLFCT 217 (392)
Q Consensus 153 ~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~-~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~ 217 (392)
|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+.. .+.+.+..++|+.++.+ +
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-----l 261 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-----L 261 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-----h
Confidence 9999999999998776 778999999999999864 33333322 23457899999999998 7
Q ss_pred EEeCCccEEEEEeCCCceeeeeecc---cC----CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257 218 VQRGDKALLAVYDISTWNKIGHKRL---LR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (392)
Q Consensus 218 ~~~~~d~~i~v~d~~~~~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 290 (392)
++.+.|..+++|+..+++......+ +. -.+. +. +-+...++.--.++.+.++++-++..++.+ ..| ...
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h-~k~ 337 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH-LKR 337 (397)
T ss_pred hhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee-ecc-cce
Confidence 9999999999999988764211111 11 1111 22 233344444445688999999999988877 578 889
Q ss_pred eEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 291 IALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
|.+.++.|+-+...+|..|+.|..|-..
T Consensus 338 i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 338 INCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eeEEeecCchhhhhccccCCcccccccc
Confidence 9999999999999999999999999774
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2e-24 Score=179.47 Aligned_cols=289 Identities=12% Similarity=0.143 Sum_probs=208.1
Q ss_pred eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-------CCCeEEEEeCCCeEEEEEE
Q 016257 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-------SGDDFVCSTTNGGCKLFEV 92 (392)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------~~~~l~~~~~d~~i~iw~~ 92 (392)
.+++.+... .-...+.+|.++.....+..- .-..+ .....|++|.. .|+++|.|+.+..|.|||+
T Consensus 138 nlIl~ar~e---ddvs~LEvYVyn~~e~nlYvH--HD~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 138 NLILCARNE---DDVSYLEVYVYNEEEENLYVH--HDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred cEEEEeecc---CCceEEEEEEEcCCCcceeEe--cceec---cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence 355555442 235678889888665333110 00001 23556777743 3679999999999999998
Q ss_pred eCCccceee--c------------cccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257 93 YGGATDINL--L------------AKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (392)
Q Consensus 93 ~~~~~~~~~--~------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 157 (392)
.-....... + .+......|...|.+++|+.+ .+.||+|+.|.+|.+||+.++++...+..|.+.|
T Consensus 210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V 289 (463)
T KOG0270|consen 210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV 289 (463)
T ss_pred ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence 643321110 0 011112347788889999884 4578999999999999999999998887777899
Q ss_pred EEEEecC-CCCeEEEEcCCCcEEEEECCCCeee-EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-
Q 016257 158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (392)
Q Consensus 158 ~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~- 234 (392)
.++.|+| ....|++|+.|+++.+.|.|..... ..+. ..+.|..++|.|..... ++.+..||+++-+|+|..
T Consensus 290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~----f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENS----FFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred eEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCcee----EEEecCCceEEeeecCCCC
Confidence 9999999 5578999999999999999953222 2232 34469999999988763 577889999999999976
Q ss_pred eeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeE
Q 016257 235 NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGA 312 (392)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i 312 (392)
+++.+++.|..+|.++++++.- .++++++.|+.|++|++..........+...-+...|.++.|+-. +++.|+..+.+
T Consensus 364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence 8889999999999999999854 678999999999999987544322211111134467777888765 67778888889
Q ss_pred EEEEeecCcc
Q 016257 313 MITKLTVPAD 322 (392)
Q Consensus 313 ~iw~~~~~~~ 322 (392)
++|++.....
T Consensus 444 ~vwd~~~~~~ 453 (463)
T KOG0270|consen 444 RVWDIFTNSP 453 (463)
T ss_pred EEeecccChh
Confidence 9999976543
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.7e-24 Score=181.16 Aligned_cols=267 Identities=18% Similarity=0.242 Sum_probs=206.3
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
+.++.|+..+ .+++ .+. +-+..+.+|.-+.....+ +... .+.+ +.-.|++......++++|+..+.
T Consensus 37 ~~s~~w~~~n---~lvv-as~----~gdk~~~~~~K~g~~~~V---p~~~-k~~g--d~~~Cv~~~s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 37 DFSFNWQRRN---FLVV-ASM----AGDKVMRIKEKDGKTPEV---PRVR-KLTG--DNAFCVACASQSLYEISGGQSGC 102 (673)
T ss_pred ceeeeccccc---eEEE-eec----CCceeEEEecccCCCCcc---ceee-cccc--chHHHHhhhhcceeeeccCcCce
Confidence 8899999875 2333 222 125667777655443222 2221 1222 24445555555589999999999
Q ss_pred EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC-cEEEEEecCC
Q 016257 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD 165 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~ 165 (392)
|+|||++... ..++.. .|...|+++.++....+||+++..|.|.|..+.++.....+....+ .|.-+.|+|.
T Consensus 103 Vkiwdl~~kl-~hr~lk------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 103 VKIWDLRAKL-IHRFLK------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS 175 (673)
T ss_pred eeehhhHHHH-Hhhhcc------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence 9999998443 322222 3778999999999999999999999999999998877655554434 5778999997
Q ss_pred CCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257 166 SEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (392)
Q Consensus 166 ~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 244 (392)
.+. |.+++.+|.|.+||+....++..+...|..+...++|+|....+ +++-+.|..|.+||.+..+....+. ..
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~Dkki~~yD~~s~~s~~~l~-y~ 250 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGYDKKINIYDIRSQASTDRLT-YS 250 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecccceEEEeecccccccceee-ec
Confidence 765 56788999999999999899888888888899999999998863 6888999999999999766654443 36
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
.+.+.++|+++|.+|+.|+..|.|..||++..+.+......| ...|++++|-|.-
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP 305 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence 789999999999999999999999999999887666666788 8889999998764
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=178.78 Aligned_cols=292 Identities=12% Similarity=0.024 Sum_probs=208.5
Q ss_pred EeeCCCCCeeEEEEcCCC--CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCC
Q 016257 58 VFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG 134 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 134 (392)
..+-+.+.|++++|+|.. +.+|+|...|+|-+||+.+.+.... .......|..+|.++.|+| +...+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccceEecCCChhheeeeccCc
Confidence 455678999999999954 4788999999999999963332111 1111224889999999999 667899999999
Q ss_pred cEEEEeCCCCceeecccC--CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCc
Q 016257 135 HLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
+|++-|++....-..+.. ....+.++.|+.+...++.+..=|...+||+++++. ...+..|.. .|..++++|-..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCPW 336 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCCch
Confidence 999999987654322222 334688899999888888888778999999998765 344444444 8999999999887
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceee----eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC----Cceeeeeee
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK----KMEINHWSK 283 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~ 283 (392)
. +++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+.|..|+|||.. ..+....+.
T Consensus 337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 3 799999999999999864332 3445688899999999998889999999999999984 333334443
Q ss_pred cccc---CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc-----eeeeeeeeeeeeeceEEEEee-ecceeeee
Q 016257 284 RLHL---GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE-----WQIYSLLLALFLASAVVFYIF-FENSDSFW 354 (392)
Q Consensus 284 ~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~d~~i~~W 354 (392)
..+. --......|.|+..++++|-.-..|-|++-+.++-... .........+......+++++ .-|.|++|
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 2221 12345678999999999999988999998775542111 111122222222222234433 56778888
Q ss_pred ccc
Q 016257 355 NFP 357 (392)
Q Consensus 355 ~~~ 357 (392)
.-.
T Consensus 493 t~k 495 (498)
T KOG4328|consen 493 TNK 495 (498)
T ss_pred ecC
Confidence 643
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.1e-22 Score=176.56 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=187.1
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeecccCCC
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAH 154 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 154 (392)
+.+++++.|+.+++||+.+++....+. ....+.+++|+|+++.+ ++++.++.|++||..+++....+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-
Confidence 567888999999999998776544332 12346789999999876 56677899999999988876555443
Q ss_pred CcEEEEEecCCCCeEEEE-cCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCC
Q 016257 155 KSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIS 232 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~ 232 (392)
..+..++|+|+++.++++ +.++.+++||+++.+.+..+..+. .+..++|+|++.. ++++..+ ..+.+||.+
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~-----l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKI-----VVNTSETTNMAHFIDTK 145 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCE-----EEEEecCCCeEEEEeCC
Confidence 335678999999877654 568999999999888777665332 4688999999986 4555544 467788998
Q ss_pred CceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeecc----c-cCcceEEEEEeeCCCeEEE-
Q 016257 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRL----H-LGTSIALVEFCPTQRVVLT- 305 (392)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----~-~~~~i~~~~~s~~~~~l~~- 305 (392)
+++....... ......++|+|++++|++++ .++.|++||+++++....+... + .......++|+|++++++.
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 146 TYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 8776544332 34567899999999886554 6899999999998876544211 1 0112456889999997554
Q ss_pred EeCCCeEEEEEeecCccccceeeeeeeeee--eeeceEEEEe-eecceeeeeccccccccc
Q 016257 306 ASKEWGAMITKLTVPADWKEWQIYSLLLAL--FLASAVVFYI-FFENSDSFWNFPVARNQH 363 (392)
Q Consensus 306 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~d~~i~~W~~~~~~~~~ 363 (392)
.+.++.+.+|++...+..........+... ......++++ ..++.|++||+..++.+.
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 455678999998754332211111111111 1122344444 358999999999877543
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=6.7e-24 Score=169.98 Aligned_cols=291 Identities=13% Similarity=0.131 Sum_probs=205.1
Q ss_pred CCceeeeecCCCC--CcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCC----C
Q 016257 3 GGGTVTCGSWIKR--PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPS----G 75 (392)
Q Consensus 3 ~~~~v~~~~w~~~--~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~----~ 75 (392)
.+.||+.++|++- -....++++.|+. .+.+|+...++. ...+.... ..|.+..+.++|+-+ .
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~-------rvtiy~c~~d~~----ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGN-------RVTIYECPGDGG----IRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCc-------EEEEEEECCccc----eeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 3578999999961 1112345544443 366888875541 11111222 247888899999753 3
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc---c
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE---P 151 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~ 151 (392)
.++|+|+.-|.|+|.|+.+++....+. .|...|+.+.+.|+ .+++++++.|..|++|++++..++..+ .
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~-------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYR-------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred eeEEeecceeEEEEEecchhhhcccee-------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 488999999999999999888655544 37889999999994 578999999999999999999987665 4
Q ss_pred CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe---------------------------cCCCcceEEEE
Q 016257 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---------------------------RNSDEKIELCR 204 (392)
Q Consensus 152 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---------------------------~~~~~~v~~~~ 204 (392)
+|.+.|.++.|++++.+|++++.|.++++|++...+....++ .-|...|.|+.
T Consensus 179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 566799999999999999999999999999997432111110 01122333333
Q ss_pred ecCCCCcceEEEEEEeCCccEEEEEeCC-Ccee-------------eeeecccCCCcEEE--EECCCCCEEEEEeCCCcE
Q 016257 205 FSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK-------------IGHKRLLRKPASVL--SISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~-------------~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i 268 (392)
|-- .. +++-+.++.|..|..- -.+. +..+......+.-+ +|.|-++.||.|...|+|
T Consensus 259 w~g--d~-----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 259 WFG--DF-----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHh--hh-----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 332 22 5777778899999872 1111 22333334455555 445668999999999999
Q ss_pred EEEecCCceeeeeeeccc--cCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 269 CVVDVKKMEINHWSKRLH--LGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
++||++..+........| ....|.+.+|+.||..|+..++|++|.-||..
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999876532211111 26789999999999999999999999888753
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=171.65 Aligned_cols=256 Identities=14% Similarity=0.184 Sum_probs=186.5
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCC--eEEEEeCCCeEEEEEEeCCcc-------ceee--ccccCCCCCCCCCeEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGAT-------DINL--LAKKMPPLQDAGPQKCLSF 120 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~~~~d~~i~iw~~~~~~~-------~~~~--~~~~~~~~~~~~~v~~~~~ 120 (392)
.|........|.+.++.+.-++-++ +.++=+..|.|+||++...-. .... .........|...=+.++|
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW 219 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence 3566666678899999999888665 455557889999999854321 0000 0001112235666789999
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCCCCceee---cccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCee-eEEEec
Q 016257 121 SV-DGSRFAAGGVDGHLRIMHWPSLRIIL---DEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA-WTFLTR 194 (392)
Q Consensus 121 s~-~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~ 194 (392)
|| ....|++|..-+.|++|...++.-.. .+..|...|..++|||. ...|++|+.||+|+|||+|.+.. ...+..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 99 23358888888999999988876432 34567779999999995 45799999999999999998832 222234
Q ss_pred CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC---ceeeeeecccCCCcEEEEECCC-CCEEEEEeCCCcEEE
Q 016257 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICV 270 (392)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i 270 (392)
.++..|+.+.|+..... +++|++||+++|||+|. ++++..++.|..+|+++.|+|. ...|++++.|..|.|
T Consensus 300 Ah~sDVNVISWnr~~~l-----LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPL-----LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred ccCCceeeEEccCCcce-----eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 45568999999988774 79999999999999985 4567889999999999999996 467888899999999
Q ss_pred EecCCcee---------------eeeeeccc-cCcceEEEEEeeCCC-eEEEEeCCCeE
Q 016257 271 VDVKKMEI---------------NHWSKRLH-LGTSIALVEFCPTQR-VVLTASKEWGA 312 (392)
Q Consensus 271 wd~~~~~~---------------~~~~~~~~-~~~~i~~~~~s~~~~-~l~~~~~dg~i 312 (392)
||+..-.- ...+...| .+..+..+.|++.-. +|++.+.||.-
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 99863211 11111223 256788899998654 77888888643
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.93 E-value=3.3e-23 Score=163.25 Aligned_cols=277 Identities=12% Similarity=0.168 Sum_probs=207.0
Q ss_pred CCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEeCC-------CeEEEEEEeCCccceeec-
Q 016257 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN-------GGCKLFEVYGGATDINLL- 102 (392)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~~d-------~~i~iw~~~~~~~~~~~~- 102 (392)
..+|.|.+..+++.+..+ ....|..|.+.|..++-+|-.+ .|+++-.+ -.+.||.+..........
T Consensus 37 K~dNqVhll~~d~e~s~l-----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t 111 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSEL-----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST 111 (370)
T ss_pred CCcceeEEEEecCccchh-----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch
Confidence 357999999999877544 3456778999999999999554 55554321 136799987654321111
Q ss_pred --cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee-eccc-----CCCCcEEEEEecC--CCCeEEEE
Q 016257 103 --AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFSL--DSEFLATT 172 (392)
Q Consensus 103 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-----~~~~~i~~i~~~~--~~~~l~~~ 172 (392)
.-..-...+.+.|.|+.|.|++..+++-. |..|.+|+++.+..+ ..+. .+....++-+|+| +++.+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 00111112456899999999999999876 889999999877652 2221 1233678889999 77777776
Q ss_pred cCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEE
Q 016257 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLS 251 (392)
Q Consensus 173 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~ 251 (392)
+ |+++..||+++.++...+...|...+..+.|+|+.++. ++++++|+.|++||.+.- .++..+..|...+.++.
T Consensus 191 ~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 191 S-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred C-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 5 69999999999999888888888889999999998863 799999999999999864 46788899999999999
Q ss_pred ECCC-CCEEEEEeCCCcEEEEecCCce------------------------eeee----eeccccCcceEEEEEeeCCC-
Q 016257 252 ISLD-GKYLAMGSKDGDICVVDVKKME------------------------INHW----SKRLHLGTSIALVEFCPTQR- 301 (392)
Q Consensus 252 ~s~~-~~~l~~~~~dg~i~iwd~~~~~------------------------~~~~----~~~~~~~~~i~~~~~s~~~~- 301 (392)
|+|. .+++++|+.|..|.+|...+-. ++.. ....| +..|++++||.-..
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWSSADPW 344 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeeccCCCe
Confidence 9995 5788999999999999653210 0000 12456 88999999998666
Q ss_pred eEEEEeCCCeEEEEEeecC
Q 016257 302 VVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 302 ~l~~~~~dg~i~iw~~~~~ 320 (392)
.+|+-+.||.+.|-.+...
T Consensus 345 iFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPRF 363 (370)
T ss_pred eEEEeccCceEEeecCChh
Confidence 5677899999999777643
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=9.9e-23 Score=167.69 Aligned_cols=302 Identities=13% Similarity=0.103 Sum_probs=214.4
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccc-cCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~ 82 (392)
..||+.+.|.++... .+++|++ |..|++|.+......-. ..-.....|..|...|+++.|+|+|+.||+|+
T Consensus 13 ~~pv~s~dfq~n~~~--~laT~G~------D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLN--KLATAGG------DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCccc--ceecccC------ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 457888888887743 5666555 88899999975432221 12234456889999999999999999999999
Q ss_pred CCCeEEEEEEeCCcc----c-----eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257 83 TNGGCKLFEVYGGAT----D-----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~----~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 153 (392)
.+|.+.+|....-.. . ............|...+..++|+|++.++++++.|..+++||+..|+.......|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 999999998762111 0 0000001111237789999999999999999999999999999999998888888
Q ss_pred CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe---------cCCC-------------cceEEEEecCCCCc
Q 016257 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---------RNSD-------------EKIELCRFSKDGTK 211 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---------~~~~-------------~~v~~~~~~~~~~~ 211 (392)
...+..++|.|-++++++-+.|...+.+.+...+.+.... .+.. .-.+.++|+|+|..
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 8899999999999999999999888877765433322211 0111 12345789999885
Q ss_pred ceEEEEEEeCC---------ccEEEEEeCCCc-eeeeeecccCCCcEEEEECC------------------CCCEEEEEe
Q 016257 212 PFLFCTVQRGD---------KALLAVYDISTW-NKIGHKRLLRKPASVLSISL------------------DGKYLAMGS 263 (392)
Q Consensus 212 ~~~~~~~~~~~---------d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~------------------~~~~l~~~~ 263 (392)
+++... -+..++|+-... ++...+.....+...+.++| -+-.+|.++
T Consensus 245 -----lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 245 -----LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred -----EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 222211 133455554322 23333344444444454443 233456666
Q ss_pred CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 264 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
. +.|++||.++.++.......| -..|+.++|++||..|+..|.||.+.+-.+...
T Consensus 320 ~-~svyvydtq~~~P~~~v~nih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 320 K-NSVYVYDTQTLEPLAVVDNIH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred c-ceEEEeccccccceEEEeeee-eeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 5 569999999988888887888 899999999999999999999999988777643
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.3e-25 Score=194.45 Aligned_cols=212 Identities=15% Similarity=0.207 Sum_probs=186.0
Q ss_pred cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (392)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 113 (392)
+.++.+|... .+.....|.+|..+|.++.|+++..+|++|+.+|+|++||++..+....+. .|..
T Consensus 49 ~~k~~L~~i~--------kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-------gh~~ 113 (825)
T KOG0267|consen 49 DEKVNLWAIG--------KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-------GHLL 113 (825)
T ss_pred ceeecccccc--------CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-------cccc
Confidence 5566677765 334444589999999999999999999999999999999999887655443 3677
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 193 (392)
.+..+.|+|-+.+.++|+.|+.+.+||.+...+...+..|...+..+.|+|+|++++.+++|.++++||+..|+....|.
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 89999999999999999999999999999888888888877789999999999999999999999999999999999888
Q ss_pred cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC
Q 016257 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (392)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 266 (392)
.|. +.+..+.|+|..-. +..|+.|+++++||+++.+.+.........|.+.+|+|+++.+++|....
T Consensus 194 ~~e-~~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 194 SHE-GKVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccc-ccccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 664 47999999998765 79999999999999999888888887788999999999999999987654
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=4.4e-23 Score=178.98 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=147.0
Q ss_pred cEEEEEecC-CCCeEEEEcCCCcEEEEECCCC-------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257 156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDG-------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (392)
Q Consensus 156 ~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (392)
.|+++.|+| |...|++++.||.|++|.+..+ .+...+..| .+.|+++.|+|-...+ +++++.|-+|+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h-~eKI~slRfHPLAadv----La~asyd~Ti~ 703 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH-GEKITSLRFHPLAADV----LAVASYDSTIE 703 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc-cceEEEEEecchhhhH----hhhhhccceee
Confidence 578999999 7788999999999999998753 233444444 4589999999975542 68899999999
Q ss_pred EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (392)
Q Consensus 228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 307 (392)
+||+++.+....+.+|...|..++|||+|+.+|+.+.||+|++|+.++++.......+..+..--.+.|.-||+++++.+
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 99999999999999999999999999999999999999999999998877544332333234455678889999999888
Q ss_pred CC----CeEEEEEeecCccccce--eeeeeeee---e-eeeceEEEEee-ecceeeeeccc
Q 016257 308 KE----WGAMITKLTVPADWKEW--QIYSLLLA---L-FLASAVVFYIF-FENSDSFWNFP 357 (392)
Q Consensus 308 ~d----g~i~iw~~~~~~~~~~~--~~~~~~~~---~-~~~~~~~~~~~-~d~~i~~W~~~ 357 (392)
.| ..|.+|+.......+.. .+...+.. + .-.++.++..+ .|..|+++.+-
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 77 46778877654322222 11111111 1 12445555555 78888888775
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=161.49 Aligned_cols=288 Identities=18% Similarity=0.202 Sum_probs=204.3
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccc------cCCceEEEeeCCCCCeeEEEEc-------C
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY------TSPLVTYVFDESEGDPMTIAVN-------P 73 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~s-------p 73 (392)
...+.|+||+.- +++ ...++.+.+|.+..+..... .......... ..+.|+..+|- |
T Consensus 52 ~kgckWSPDGSc--iL~-------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 52 LKGCKWSPDGSC--ILS-------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred hccceeCCCCce--EEe-------ecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCC
Confidence 467899999964 444 44688899999864332211 1111222222 24578888874 6
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC-CCCceee--cc
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW-PSLRIIL--DE 150 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~--~~ 150 (392)
+..++++.+.+.-|++||.-+++....+..- .....-....+++|+|||.+|++|. ...|+++|+ +.|.... ..
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~y--dh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAY--DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhh--hhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 7789999999999999999998865443221 1111123557999999999999875 678999999 5554321 11
Q ss_pred cC-----CCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC-Cc
Q 016257 151 PK-----AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DK 223 (392)
Q Consensus 151 ~~-----~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d 223 (392)
.. ..+-|.+++|+| +.+.++.++....+-|+.-..+.++..+-++ .+.|+.+.|.++|+. ++++. .+
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~-----lfsGaRk~ 272 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNK-----LFSGARKD 272 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCe-----ecccccCC
Confidence 11 234688999999 5568999999889999988888888877655 557999999999998 55554 47
Q ss_pred cEEEEEeCCCce-eeeeecccCC-CcE--EEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCcceEEEEEee
Q 016257 224 ALLAVYDISTWN-KIGHKRLLRK-PAS--VLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 224 ~~i~v~d~~~~~-~~~~~~~~~~-~v~--~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
..|..||+|.-+ ++..+..|.. .-. -....|++++|++|+.||.|++||+++ +..+..+ ..+ ...++.++++|
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~-sd~vNgvslnP 350 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNY-SDTVNGVSLNP 350 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccc-cccccceecCc
Confidence 889999999643 3444444433 222 345578999999999999999999998 5544444 456 78999999999
Q ss_pred CCCeEEEEeCCCeEEEEEee
Q 016257 299 TQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~ 318 (392)
-=.++++++.. +++...
T Consensus 351 ~mpilatssGq---r~f~~~ 367 (406)
T KOG2919|consen 351 IMPILATSSGQ---RIFKYP 367 (406)
T ss_pred ccceeeeccCc---eeecCC
Confidence 98888888766 555443
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6.6e-23 Score=176.56 Aligned_cols=286 Identities=14% Similarity=0.107 Sum_probs=216.0
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC--eEEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVCS 81 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~~ 81 (392)
.+.|+|++-.|.+ ..+++|+. ++++++|.+. +..+..++. ..+.|.|++|+|.++ .||++
T Consensus 400 tg~Vr~iSvdp~G---~wlasGsd------DGtvriWEi~--------TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 400 TGLVRSISVDPSG---EWLASGSD------DGTVRIWEIA--------TGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred CCeEEEEEecCCc---ceeeecCC------CCcEEEEEee--------cceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 4789999999977 56888877 6779999997 444444443 256899999999775 45555
Q ss_pred eCCCeEEEEEEeCCccce---------ee------------cc---------ccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 82 TTNGGCKLFEVYGGATDI---------NL------------LA---------KKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~---------~~------------~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
-... +.|.+..-+.... .. .. .....+.|...|+.+.|+..|.||++..
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 4444 5555543321100 00 00 0011234678899999999999999976
Q ss_pred CC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257 132 VD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (392)
Q Consensus 132 ~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (392)
.+ ..|.|+++........+...++.|..+.|+|...+|++++. ..|++||+..+..++.+..... .|..++.+|.
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~ 618 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPN 618 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eeeeeeecCC
Confidence 53 56889998776665556666778999999999999998886 7899999988877777765544 7999999999
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe------cCCceee--
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD------VKKMEIN-- 279 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd------~~~~~~~-- 279 (392)
|.. ++.++.|+.+..||+.-. ++.+.++.|...+++++|++.-.++++|+.||++.||. +-...++
T Consensus 619 GDn-----li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 619 GDN-----LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CCe-----EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 998 899999999999999854 56788889999999999999999999999999999984 3222211
Q ss_pred eeeecccc---CcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257 280 HWSKRLHL---GTSIALVEFCPTQRVVLTASKEWGAMIT 315 (392)
Q Consensus 280 ~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iw 315 (392)
.....+|. ...|..+.|+|...+|++++.||+|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 12224561 2348889999999999999999999998
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=8.6e-23 Score=172.19 Aligned_cols=267 Identities=15% Similarity=0.145 Sum_probs=202.6
Q ss_pred ceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEE--EeCCCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC--STTNGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (392)
Q Consensus 36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 113 (392)
++++|++....... ....... .-.+.++.|+.... |++ .+.|..+++|.-........... .. ...
T Consensus 13 ~~kl~D~s~~~~~~----~~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~--k~---~gd 80 (673)
T KOG4378|consen 13 KTKLSDFSDLETKS----EYVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVR--KL---TGD 80 (673)
T ss_pred ceEEeecccccCcc----ccccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceee--cc---ccc
Confidence 48899887443211 1111111 22388899987654 444 35677788887544311111111 00 112
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 193 (392)
.-.|++......++++|+..+.|+|||++...+.+.+..|...|+++.++....+||+++..|.|.|..+.++.....+.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 33455554555799999999999999999766666777788899999999999999999999999999999988888887
Q ss_pred cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee-cccCCCcEEEEECCC-CCEEEEEeCCCcEEEE
Q 016257 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLD-GKYLAMGSKDGDICVV 271 (392)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw 271 (392)
...+..++-+.|+|..+.+ +.+++++|.|.+||+....++... ..|..+...++|+|. ..+|++.+.|.+|.+|
T Consensus 161 ~~sgqsvRll~ys~skr~l----L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFL----LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred cCCCCeEEEeeccccccee----eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence 7767678899999998863 688999999999999987776443 578889999999995 5778899999999999
Q ss_pred ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257 272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 272 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
|....+....+.- ..+.+.++|+++|.+|++|+..|.|..||++..+
T Consensus 237 D~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 237 DIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9998776665533 5589999999999999999999999999998543
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=8.3e-23 Score=178.25 Aligned_cols=279 Identities=13% Similarity=0.154 Sum_probs=207.1
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d 84 (392)
.-|+.++|-||+.. .+++.|+. ++.+|++ .+....++++|.+.|+|++|+.||+.+|+|+.|
T Consensus 13 hci~d~afkPDGsq-L~lAAg~r-----------lliyD~n------dG~llqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQ-LILAAGSR-----------LLVYDTS------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred cchheeEECCCCce-EEEecCCE-----------EEEEeCC------CcccccccccccceEEEEEEccCCceeccCCCc
Confidence 46889999999987 33443333 5555544 444556799999999999999999999999999
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 164 (392)
..|.+|+-+-... -...|...|.|+.|+|-.+.|++++-+ ..-+|..+..... .......+.+++|..
T Consensus 75 K~VI~W~~klEG~---------LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 75 KSVIIWTSKLEGI---------LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTN 142 (1081)
T ss_pred eeEEEecccccce---------eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecC
Confidence 9999998654331 112488999999999998899998754 3668876543222 122334789999999
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
||++++.|-.||+|.+-+- ++++...+. ++.+++|.+++|+|....-..-.++...-..++..|.+. ++.+..-+.
T Consensus 143 DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~ 220 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA 220 (1081)
T ss_pred CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc
Confidence 9999999999999998764 444444443 345678999999997542111124555556667777665 455544455
Q ss_pred cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
......|+.+.++|.++..|+.|+.+++|-. .|-.+.+... . ...|+.++..|++++++.|+.||+|..|++-
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~-~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE-Q-DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc-c-ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 5666779999999999999999999999964 4444444422 2 6799999999999999999999999998875
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=5.3e-23 Score=178.47 Aligned_cols=129 Identities=17% Similarity=0.270 Sum_probs=102.8
Q ss_pred EEEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 56 ~~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
...+.+|.+.|+.+.|+| +..+||+++.|..|+||.+..+. ...+.......-...-.+.++.|+|...-|+..+.-|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~-~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGH-SQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCc-ccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 345789999999999999 45588999999999999998443 2222222221122345789999999655555555689
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 185 (392)
.+++||+.+++....+.+|...|.+..|+.||++|++++.|..|+|||.+.
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999999999999999999999999999999999999999999999763
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=176.07 Aligned_cols=287 Identities=15% Similarity=0.136 Sum_probs=197.2
Q ss_pred eEEEEcC---CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257 67 MTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (392)
Q Consensus 67 ~~~~~sp---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 143 (392)
.+..|++ ....|+.+..+|.|.++|.+...... ........+.|...|..+.|-|....|++++.|.+++.||+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 4467765 23478899999999999987654321 1111234456899999999999767899999999999999999
Q ss_pred Cceeec--ccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCee--------------------eE-------EEe
Q 016257 144 LRIILD--EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVA--------------------WT-------FLT 193 (392)
Q Consensus 144 ~~~~~~--~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~--------------------~~-------~~~ 193 (392)
.+.... ..+|...+.+++|.|+. ..|++|+.||.|.|||++-... .. ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 888766 78888999999999954 5788999999999999874321 00 000
Q ss_pred cCCCcceEE---EEecCCCCcceEEEEEEeCC-ccEEEEEeCCCceeeeee--------ccc---CCCcEEEEECCCCCE
Q 016257 194 RNSDEKIEL---CRFSKDGTKPFLFCTVQRGD-KALLAVYDISTWNKIGHK--------RLL---RKPASVLSISLDGKY 258 (392)
Q Consensus 194 ~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~--------~~~---~~~v~~~~~s~~~~~ 258 (392)
.+ ...+.+ +.+..|... +++++. |+.|+|||++........ ..+ ...+.++.....|.+
T Consensus 212 A~-s~ti~ssvTvv~fkDe~t-----laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 212 AA-SNTIFSSVTVVLFKDEST-----LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cc-cCceeeeeEEEEEeccce-----eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11 112333 334445554 677666 999999999975442211 112 235677888888899
Q ss_pred EEEEeCCCcEEEEecCCceeeee-eeccccCcce-EEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---ee--eee
Q 016257 259 LAMGSKDGDICVVDVKKMEINHW-SKRLHLGTSI-ALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QI--YSL 331 (392)
Q Consensus 259 l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~--~~~ 331 (392)
|++.+.|+.|+.|++.+...--. ...++..... ..-..+|++.+|++|+.|...++|.++.+..-.+. +. ...
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT 365 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence 99888899999999987542211 1122211111 12246899999999999999999999977654322 11 112
Q ss_pred eeeeeeeceEEEEeeecceeeeecccccc
Q 016257 332 LLALFLASAVVFYIFFENSDSFWNFPVAR 360 (392)
Q Consensus 332 ~~~~~~~~~~~~~~~~d~~i~~W~~~~~~ 360 (392)
.........-+++++.|..+++|++..+-
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred EeeccccCCCceeeccCcceEEEeccCch
Confidence 22223344566777889999999996553
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=2e-22 Score=165.31 Aligned_cols=282 Identities=12% Similarity=0.104 Sum_probs=200.4
Q ss_pred ceeeeecCCC-----CCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeE
Q 016257 5 GTVTCGSWIK-----RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDF 78 (392)
Q Consensus 5 ~~v~~~~w~~-----~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l 78 (392)
-+|+-++|.. ++..++++.-+++.+. ..+.-+...+..- ...-.+.||+++|..++|+| +.+.|
T Consensus 28 IrVs~~tWDS~fcavNPkfiAvi~easgGga------f~ViPl~k~Gr~d----~~~P~v~GHt~~vLDi~w~PfnD~vI 97 (472)
T KOG0303|consen 28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGA------FLVIPLVKTGRMD----ASYPLVCGHTAPVLDIDWCPFNDCVI 97 (472)
T ss_pred eeeeeeeccccccccCCceEEEEEecCCCcc------eeecccccccccC----CCCCCccCccccccccccCccCCcee
Confidence 3566677765 3344455544444322 3344443222111 11123679999999999999 55688
Q ss_pred EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (392)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i 157 (392)
|+|+.|.+|.||.+..+.....+.........|...|-.++|+|. .+.|++++.|.+|.+||+.+++.+..+. |...|
T Consensus 98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i 176 (472)
T KOG0303|consen 98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMV 176 (472)
T ss_pred ecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeE
Confidence 999999999999998876555544333334458899999999994 5688999999999999999999887765 88899
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (392)
Q Consensus 158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 237 (392)
+++.|+.||.+|++.+.|..|+|||.++++.+..-..|.+..-..+.|-.++.. +...++...+.++.+||....+..
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i--~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI--FTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce--eeeccccccccceeccCcccccCc
Confidence 999999999999999999999999999999998887777767778888888882 222333446789999998765432
Q ss_pred eeec--ccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceee-eeeeccccCcceEEEEEeeC
Q 016257 238 GHKR--LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEIN-HWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 238 ~~~~--~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~ 299 (392)
..+. .....|.-.-|.+|.+.++.++ .|+.|+.|.+...... ..+.......+-..+.|-|.
T Consensus 255 ~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 255 IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 2222 2245676677888888877655 7999999999775522 22211111445566777664
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=4.6e-22 Score=159.25 Aligned_cols=253 Identities=13% Similarity=0.095 Sum_probs=186.8
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcccee------eccccCCCCCCCCCeEEEEec-------CCCCEEEEEe
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN------LLAKKMPPLQDAGPQKCLSFS-------VDGSRFAAGG 131 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~ 131 (392)
-...+.|+|||..|++-+.|..+.+|++........ +.............|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345689999999999999999999999864432111 000000111223566777764 5777999999
Q ss_pred CCCcEEEEeCCCCceeecccC--CCC---cEEEEEecCCCCeEEEEcCCCcEEEEEC-CCCeeeE---EEe---cCCCcc
Q 016257 132 VDGHLRIMHWPSLRIILDEPK--AHK---SVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWT---FLT---RNSDEK 199 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~--~~~---~i~~i~~~~~~~~l~~~~~d~~i~vwd~-~~~~~~~---~~~---~~~~~~ 199 (392)
.+.-|++||.-+|+....+.. |.. ...+++|+|||.+|++|. .+.|++||+ +.|..-. ++. ....+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999887655433 333 456899999999998775 589999999 4443211 111 123457
Q ss_pred eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCcee
Q 016257 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI 278 (392)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~ 278 (392)
+.+++|+|.... +++.++....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|++|+. |..|..||++....
T Consensus 210 isc~a~sP~~~~----~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 210 ISCFAFSPMDSK----TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeeccCCCCc----ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 889999998764 2688899999999999888999999999999999999999999999984 67899999997554
Q ss_pred eeeeeccccCcceEEE--EEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 279 NHWSKRLHLGTSIALV--EFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 279 ~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
+......|....-..+ ...|++++|++|+.||.|++||++....
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 3332234422233344 4467899999999999999999997554
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-21 Score=155.76 Aligned_cols=253 Identities=11% Similarity=0.151 Sum_probs=183.7
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEEeC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTT 83 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~~ 83 (392)
-|.|+.|.+-+.| +++++ +|.+++||+++.+.... .+....+.|.+.|..+.|-+ -|+.+|+++.
T Consensus 15 lihdVs~D~~GRR---mAtCS------sDq~vkI~d~~~~s~~W----~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 15 LIHDVSFDFYGRR---MATCS------SDQTVKIWDSTSDSGTW----SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred eeeeeeecccCce---eeecc------CCCcEEEEeccCCCCce----EEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 3899999999876 44333 47789999987665443 34566889999999999954 6899999999
Q ss_pred CCeEEEEEEeCCc--cceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCC------ceeeccc--
Q 016257 84 NGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSL------RIILDEP-- 151 (392)
Q Consensus 84 d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-- 151 (392)
|+++.||.-.... ................+.|+.+.|.| -|-.|++++.||.+|||+.... ....++.
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999999863221 11111111111223467899999999 5778999999999999986432 1111221
Q ss_pred -----CCCCcEEEEEecCC---CCeEEEEcCC-----CcEEEEECCCCe----eeEEEecCCCcceEEEEecCCCCcceE
Q 016257 152 -----KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 152 -----~~~~~i~~i~~~~~---~~~l~~~~~d-----~~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
.++.+..|+.|+|. ..+|+.|+.+ +.++||....+. .+.++. .+..+|+.++|.|+-...|.
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCcee
Confidence 34457889999983 4568887765 478899865443 233444 34569999999998555443
Q ss_pred EEEEEeCCccEEEEEeCCCc--------------------eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 215 FCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
. +++++.|| |+||.++.. +.+..+..|++.|..+.|.-.|..|++.+.||.|++|...
T Consensus 241 ~-lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 241 L-LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred e-EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 3 78899999 999998731 2345567889999999999999999999999999999754
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.2e-22 Score=165.78 Aligned_cols=286 Identities=13% Similarity=0.160 Sum_probs=194.1
Q ss_pred eEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-------CCCEEEEEeCCCcE
Q 016257 67 MTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-------DGSRFAAGGVDGHL 136 (392)
Q Consensus 67 ~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i 136 (392)
-.+..-|+.+.++++-.+ ..+.+|-.+.... .+..++-.. -.....|++|.. -|+++|.|+.|..|
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~i--lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFI--LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEeccee--ccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 345666766777766433 2344443333321 111100000 012335666633 36799999999999
Q ss_pred EEEeCCCCce---eec------------------ccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257 137 RIMHWPSLRI---ILD------------------EPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (392)
Q Consensus 137 ~i~d~~~~~~---~~~------------------~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 194 (392)
.|||+.-... ... ..+|...|..++|+.. .+.||+|+.|.+|++||+.++++..++.
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~- 283 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT- 283 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-
Confidence 9999842110 000 1234456778888874 4579999999999999999999999887
Q ss_pred CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEec
Q 016257 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDV 273 (392)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~ 273 (392)
++...|.++.|+|..... +++|+.|+++.+.|.|........-...+.|..++|.|.. ..+++++.||+|+-+|+
T Consensus 284 ~~~k~Vq~l~wh~~~p~~----LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSV----LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred hcCCceeEEEecCCCceE----EEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 445689999999987752 7999999999999999643333333346789999999965 56778889999999999
Q ss_pred CCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCccccce----eeee--eeeeeeeeceEEEEee
Q 016257 274 KKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPADWKEW----QIYS--LLLALFLASAVVFYIF 346 (392)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~ 346 (392)
+...........| .++|+++++++.-. ++++++.|+.+++|++.......+. .+.. ...........++.++
T Consensus 360 R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 360 RNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred CCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC
Confidence 9874333444789 99999999988655 7889999999999999865443222 1111 1111111334566666
Q ss_pred ecceeeeecccccccc
Q 016257 347 FENSDSFWNFPVARNQ 362 (392)
Q Consensus 347 ~d~~i~~W~~~~~~~~ 362 (392)
..+.+++||+.+...+
T Consensus 439 ~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 439 EKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceEEEeecccChhH
Confidence 7778999999876543
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=162.60 Aligned_cols=228 Identities=15% Similarity=0.238 Sum_probs=168.4
Q ss_pred cCceeEEEEcCCCCcc--------ccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccc
Q 016257 34 PSVLEIFSFDPKTTSV--------YTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAK 104 (392)
Q Consensus 34 ~~~i~i~~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 104 (392)
.+.++||.+.+.-..+ .......+++.+|.+.=+.++|||-. ..|++|..-+.|++|...++.-.. .
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v----d 249 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV----D 249 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee----c
Confidence 3457777765321111 12334567889999999999999933 258888878889999998865322 2
Q ss_pred cCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCc--eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEE
Q 016257 105 KMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181 (392)
Q Consensus 105 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw 181 (392)
..+...|...|..++||| ....|++|+.||+|+|||++.+. .......|...|+.|.|+.+-.+||+|+.||+++||
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW 329 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE
Confidence 334445899999999999 45689999999999999999873 223346677789999999988899999999999999
Q ss_pred ECCC---CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee----------------eeeecc
Q 016257 182 KTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----------------IGHKRL 242 (392)
Q Consensus 182 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------------~~~~~~ 242 (392)
|+++ ++++..+..| ..+|+++.|+|..... +++++.|.+|.+||+....- .+.+..
T Consensus 330 DLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~----iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 330 DLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSV----IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred EhhhccCCCcceeEEec-cCCeeEEEeccccCce----EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 9985 4667778766 4589999999987652 68899999999999864211 111222
Q ss_pred c--CCCcEEEEECCC-CCEEEEEeCCCcEEEE
Q 016257 243 L--RKPASVLSISLD-GKYLAMGSKDGDICVV 271 (392)
Q Consensus 243 ~--~~~v~~~~~s~~-~~~l~~~~~dg~i~iw 271 (392)
| ...+..+.|+++ ..++++.+.|| +.||
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 2 345777889885 35777777887 5555
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7.1e-23 Score=188.91 Aligned_cols=256 Identities=13% Similarity=0.157 Sum_probs=198.4
Q ss_pred CceeeeecCCCCCcce-eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEE
Q 016257 4 GGTVTCGSWIKRPENV-NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~-~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~ 81 (392)
..+.+.++|.+.+.+. -+++.|. .+|.|.+|+-+.-... ...........|++.|..+.|++... .||+|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~------edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGL------EDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred cccceeeeecccCCCccceeeccc------cCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 4677899999976542 2444333 4777989987652111 12334456788999999999999655 99999
Q ss_pred eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCC--cEE
Q 016257 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVL 158 (392)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~ 158 (392)
+.||.|.|||+.+.+...... .....+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..+.. .+.
T Consensus 136 a~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 999999999998865433332 122457899999998 456788999999999999998888777665554 588
Q ss_pred EEEecCCC-CeEEEEcCCC---cEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 159 DMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 159 ~i~~~~~~-~~l~~~~~d~---~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
.++|+|+. ..+++++.|. .|.+||+|.- .+++.+..|.. .|.++.|++.+..+ +++++.|+.|.+|+.++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~l----llSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRL----LLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchh----hhcccCCCCeeEecCCC
Confidence 99999976 4577776553 5999999864 45566655544 69999999988553 79999999999999999
Q ss_pred ceeeeeecccCCCcEEEEECCCCC-EEEEEeCCCcEEEEecCCce
Q 016257 234 WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 277 (392)
++.+..+......+..+.|+|... .+++.+-||.|.||.+.+..
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999988889999999999764 88889999999999987654
No 167
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=155.28 Aligned_cols=246 Identities=13% Similarity=0.084 Sum_probs=173.5
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee----cccCCCCcEEEEEecCCCCeEEEE-cCCCcEEEEECC
Q 016257 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL----DEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTE 184 (392)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~ 184 (392)
.|.+.|++++|+.||++|++++.|+.|++|+++...... +..-.-+..+.+.|.||-+-++.. -...++++|.+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 488999999999999999999999999999997633210 011111356789999998765544 445679999875
Q ss_pred CCee---eE--------EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC
Q 016257 185 DGVA---WT--------FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (392)
Q Consensus 185 ~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s 253 (392)
..+. .. .+...+...+..+-....+.+ +++++.|..|.+|+++ ++.+..+......-+..+.|
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-----imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-----IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceE-----EEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 3221 11 112223334444555555554 7999999999999999 78888887777777889999
Q ss_pred CCCCEEEEEeCCCcEEEEecC---Ccee---ee-eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc----c
Q 016257 254 LDGKYLAMGSKDGDICVVDVK---KMEI---NH-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA----D 322 (392)
Q Consensus 254 ~~~~~l~~~~~dg~i~iwd~~---~~~~---~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----~ 322 (392)
|+|+++++++---.|++|.+- .|.. .+ ....+| .+.|..++|+++.+.+++.+.||++++||++..- +
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999988889999863 2221 11 123689 9999999999999999999999999999987431 1
Q ss_pred ccceeee--------eee-eeeeeeceEEEEeeecceeeeecccccccc
Q 016257 323 WKEWQIY--------SLL-LALFLASAVVFYIFFENSDSFWNFPVARNQ 362 (392)
Q Consensus 323 ~~~~~~~--------~~~-~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~ 362 (392)
....... ..+ .-....++..+..++...++++....|+..
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDY 365 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccc
Confidence 1111111 011 111224556666777788999998887755
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=4.8e-21 Score=151.16 Aligned_cols=262 Identities=17% Similarity=0.185 Sum_probs=189.0
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcccc-CCceEEEee-CCCCCeeEEEEcCCCCeEEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFD-ESEGDPMTIAVNPSGDDFVCS 81 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~ 81 (392)
.|.|..++=+|..+++..-++... ..++.-....||.+..+...... +......|. .+-+.|.|+.|.|++..+++-
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~-s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDT-SDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred CcceehhhcCCCCCceEEEEEecc-CCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 578999999998877333333222 22445567789998754333111 112222343 456799999999999999987
Q ss_pred eCCCeEEEEEEeCCcc-ceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeecccCCCC-cE
Q 016257 82 TTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV 157 (392)
Q Consensus 82 ~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i 157 (392)
. |..|.+|++..... ...+... ...++....++-+|+| |++.+++.+ |++++.||+++.++...+...|+ .+
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~v 217 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRV 217 (370)
T ss_pred c-cCceEEEEcccCcchheeeccc--ccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhccee
Confidence 5 66799999987765 2222221 1223456778889999 888888764 89999999999888777776665 79
Q ss_pred EEEEecCCCC-eEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-
Q 016257 158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (392)
Q Consensus 158 ~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~- 234 (392)
.++.|+|+.+ +|++|+.||.|++||.+..+ ++..+..| ...+.++.|+|....+ +++++.|..|.+|...+-
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHWvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHWVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceEEEEEEecCccceE----EEecCCCceeEEEeccccc
Confidence 9999999765 58899999999999998765 45555544 5599999999987763 688999999999865421
Q ss_pred ----------------------------eeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCC
Q 016257 235 ----------------------------NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 235 ----------------------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~ 275 (392)
..+..+..|...|.+++||.-. -.+|+-+.||++.|=.+..
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1133556678899999998754 5578889999998866543
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=2.8e-19 Score=156.77 Aligned_cols=273 Identities=10% Similarity=0.094 Sum_probs=175.8
Q ss_pred CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (392)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (392)
.++.|.+|.++..+ . ......+. +.+.+..++++|++++|++++ .++.|.+|++...... ..... ...
T Consensus 10 ~~~~I~~~~~~~~g-~----l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~----~~~ 78 (330)
T PRK11028 10 ESQQIHVWNLNHEG-A----LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAE----SPL 78 (330)
T ss_pred CCCCEEEEEECCCC-c----eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeee----ecC
Confidence 45679999996322 1 12223333 346688899999999887764 4778999999632211 11111 112
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcee---ecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCC
Q 016257 112 AGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG 186 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~ 186 (392)
.+....++|+|++++|++++. ++.|.+|++++.... .....+......++++|+++++++++ .++.|.+||+++.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 235678999999999888764 789999999643211 11112223567788999999886554 5689999999763
Q ss_pred eeeE-----EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC--c--eeeeeeccc------CCCcEEEE
Q 016257 187 VAWT-----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--W--NKIGHKRLL------RKPASVLS 251 (392)
Q Consensus 187 ~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~--~--~~~~~~~~~------~~~v~~~~ 251 (392)
..+. ............++|+|+++++ .++...++.|.+||++. + +.+..+... ......+.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~l----yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYA----YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEE----EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 3221 1111223356789999999972 23444589999999973 2 222222211 11234688
Q ss_pred ECCCCCEEEEEeC-CCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCCCeEEEEeC-CCeEEEEEeecC
Q 016257 252 ISLDGKYLAMGSK-DGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMITKLTVP 320 (392)
Q Consensus 252 ~s~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 320 (392)
++|++++++++.. ++.|.+|++.... ................+.++|+|++|++++. +++|.+|+++..
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 9999999999864 6889999986432 1111111110234568899999999988775 899999998643
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=150.25 Aligned_cols=250 Identities=16% Similarity=0.137 Sum_probs=183.7
Q ss_pred CceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (392)
|...+.+++|.+.|+++.|..+++ |.+|...|.|++|++.+......+.. .+...|+.+.--|+ ..+.+-+.
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~------~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL------FGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh------hccceeeceeecCC-cchhhcCC
Confidence 344566789999999999988765 88999999999999998764333221 14557777777776 46677778
Q ss_pred CCcEEEEeCCCCceeec------------------------c-----------------------------cCCCCcEEE
Q 016257 133 DGHLRIMHWPSLRIILD------------------------E-----------------------------PKAHKSVLD 159 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~------------------------~-----------------------------~~~~~~i~~ 159 (392)
|..+.+|++..+..+.. + ....+.+.+
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 88888887654211000 0 001123445
Q ss_pred EEecC-CCC--eEEEEcCCCcEEEEECCCCeeeEEEe---------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257 160 MDFSL-DSE--FLATTSTDGSARIWKTEDGVAWTFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (392)
Q Consensus 160 i~~~~-~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (392)
..+.- ++. ++++|.++|.+.+||+.++..+-.+. ..+..++.++.+.+.-.. .+.++.+..+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-----Gisgga~dkl~ 230 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-----GISGGADDKLV 230 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-----CcCCCccccce
Confidence 55432 233 46678899999999999874433322 123458899999876555 68888888999
Q ss_pred EEeCCCc--e--eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257 228 VYDISTW--N--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (392)
Q Consensus 228 v~d~~~~--~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 303 (392)
.|++... . ...........+..+.+-||++.+|+++.|++||||+.++...+..+ ..| ...|++++|+|+...+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-kyH-sagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-KYH-SAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-hhh-hcceeEEEeCCCCchh
Confidence 9988643 1 12233334557888999999999999999999999999999998877 578 8999999999999999
Q ss_pred EEEeCCCeEEEEEe
Q 016257 304 LTASKEWGAMITKL 317 (392)
Q Consensus 304 ~~~~~dg~i~iw~~ 317 (392)
|+++.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=5.8e-18 Score=154.18 Aligned_cols=333 Identities=19% Similarity=0.299 Sum_probs=233.4
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEE-cCCCC-eEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC 80 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-sp~~~-~l~~ 80 (392)
...+.++.+.+.+.. +..++ .++.+.+|...... .....+.++. ..+..+.+ ++++. .++.
T Consensus 65 ~~~i~~~~~~~~~~~---~~~~~------~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 65 EDSITSIAFSPDGEL---LLSGS------SDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred cceEEEEEECCCCcE---EEEec------CCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 456888888887743 33322 36678888887432 1333444433 36777777 88887 4554
Q ss_pred EeC-CCeEEEEEEeC-CccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeecccCCCCcE
Q 016257 81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV 157 (392)
Q Consensus 81 ~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i 157 (392)
.+. |+.+.+|+... ........ .|...|..++|+|++..+++++. |+.+++|+...+.....+..|...+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLE-------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEe-------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 444 89999999987 33222222 26778999999999998888885 9999999999877777777778899
Q ss_pred EEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257 158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (392)
Q Consensus 158 ~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 235 (392)
.+++|+|++. .+++++.|+.+++||...+.... .+..+.. .. ...|+|++.. +++++.++.+++||.+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence 9999999998 55555899999999998777776 4554443 32 2389999954 5689999999999998766
Q ss_pred e-eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCCeEEEE-eCCCeE
Q 016257 236 K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTA-SKEWGA 312 (392)
Q Consensus 236 ~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i 312 (392)
. ......|...+.++.|+|++..+++++.|+.+.+||..+........ ..| ...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence 4 33445668899999999988888889989889999998877665553 356 5579999994332455555 688999
Q ss_pred EEEEeecCccccceeeeeeeeeeee-eceEEE-EeeecceeeeecccccccccCCCC
Q 016257 313 MITKLTVPADWKEWQIYSLLLALFL-ASAVVF-YIFFENSDSFWNFPVARNQHGGPK 367 (392)
Q Consensus 313 ~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~d~~i~~W~~~~~~~~~~~p~ 367 (392)
.+|++.................... ...... ....++.+.+|+............
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (466)
T COG2319 354 RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410 (466)
T ss_pred EeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccC
Confidence 9999986652111111100111111 111222 245788999999988776654444
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=2.4e-19 Score=146.36 Aligned_cols=242 Identities=18% Similarity=0.184 Sum_probs=183.6
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC--CcEEEEe
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMH 140 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d 140 (392)
...+..+.|+.+...|..|+.|| .++|+.+....... .......|--+-|+. .++|..+.+ ..+++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-------~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-------KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-------ccCCCeEEEEeeccc--ceeEEEecCCCceEEEEE
Confidence 34566777999999999999999 88888766543111 111223455556654 366655543 4589999
Q ss_pred CCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
++.+..+.... ...+|.++.++. +.|+++-++ .|+|||+++.+.++++..-...+-..++++++...-++. .-.+
T Consensus 75 ~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-yp~s 149 (391)
T KOG2110|consen 75 FKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-YPGS 149 (391)
T ss_pred cccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-ecCC
Confidence 88777665443 345788888874 456666554 499999999999998876533344456666655432322 1234
Q ss_pred CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc-EEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
...|.|.+||..+.+++..+..|++++.+++|+++|.+||++++.|+ ||++.+.+|+.+..+.++-....|.+++|+|+
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 45799999999999999999999999999999999999999999998 79999999999999987765678999999999
Q ss_pred CCeEEEEeCCCeEEEEEeec
Q 016257 300 QRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~ 319 (392)
+++|++.+..++|.++++..
T Consensus 230 s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCeEEEecCCCeEEEEEecc
Confidence 99999999999999999974
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.8e-21 Score=166.82 Aligned_cols=260 Identities=15% Similarity=0.182 Sum_probs=190.7
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceee-ccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (392)
....++..|.+.|+.++|+|....|++++.||.+.+|++......... .......-.|.++|.|++..++++.+++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 344578889999999999999999999999999999999432211111 1111122348999999999999999999999
Q ss_pred CCcEEEEeCCCC----------ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC-CcceE
Q 016257 133 DGHLRIMHWPSL----------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIE 201 (392)
Q Consensus 133 dg~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~ 201 (392)
||+|+.|++... .....+.+|.+.++.+++|+....|++++.||++++|+.....+ .++.... .+...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999976421 12234567888999999999999999999999999999876555 3332221 12334
Q ss_pred EEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc-------CCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
++.+....... .++....+.-.++++.....+..+... ...+..+.++|.+.+.+++..|+.|+++|..
T Consensus 444 svd~~ss~~a~----~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAH----SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHh----hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 55554433210 233333333444454444333322211 2356678899999999999999999999999
Q ss_pred CceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
+++.+... ..| ...++++++.|+|.+|++++.|+.+++|++..+
T Consensus 520 ~~~~l~s~-~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSM-VAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchhe-eec-cceecceeecCCCceEEeecCCceeehhhccch
Confidence 99988876 577 889999999999999999999999999998644
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=7.6e-20 Score=146.92 Aligned_cols=288 Identities=15% Similarity=0.162 Sum_probs=201.4
Q ss_pred EeeCCCCCeeEEEEcC----CC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC----CCEEE
Q 016257 58 VFDESEGDPMTIAVNP----SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFA 128 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp----~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~ 128 (392)
....|..+|..++|++ +. +.+++++ ..++.+|+.........+.. .....+......++|+-+ ..++|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~--y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQS--YADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeee--ccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 3567889999999985 22 3455554 44599999876652222221 122246667788888653 34788
Q ss_pred EEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEec--CCCcceEEEEe
Q 016257 129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRF 205 (392)
Q Consensus 129 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~ 205 (392)
+|+.-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|.+|++|++++..++..+-+ .|...|.++.|
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 88999999999999999998889998999999999965 7899999999999999999999988843 45568999999
Q ss_pred cCCCCcceEEEEEEeCCccEEEEEeCCCceeee----------------------------eecccCCCcEEEEECCCCC
Q 016257 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG----------------------------HKRLLRKPASVLSISLDGK 257 (392)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~----------------------------~~~~~~~~v~~~~~s~~~~ 257 (392)
++++.+ +++++.|.+|++|++...+... +...|...|.|+.|- |.
T Consensus 190 ~~~gd~-----i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd 262 (385)
T KOG1034|consen 190 SLDGDR-----IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD 262 (385)
T ss_pred cCCCCe-----eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence 999997 8999999999999998432110 111233344444443 57
Q ss_pred EEEEEeCCCcEEEEecC-Cceeeeee------------eccccCcceEEEEE--eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 258 YLAMGSKDGDICVVDVK-KMEINHWS------------KRLHLGTSIALVEF--CPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 258 ~l~~~~~dg~i~iwd~~-~~~~~~~~------------~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
++++=+-++.|..|... -.+..... .... ...|+-+.| .|-+++||.|...|.+.+|+++...+
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 88888888999999762 11111100 0111 445666655 45678999999999999999986655
Q ss_pred ccceeeeeee-------eeeeeeceEEEEeeecceeeeecc
Q 016257 323 WKEWQIYSLL-------LALFLASAVVFYIFFENSDSFWNF 356 (392)
Q Consensus 323 ~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~i~~W~~ 356 (392)
.....+..+. ..+.-....+++...|+.|-=||.
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3322222211 122224446666777888777764
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=153.35 Aligned_cols=263 Identities=13% Similarity=0.058 Sum_probs=194.0
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
.+.+...+.+|.+.|+++.|+.++++|++|+.|..+++|++...-............-.|.+.|.|++|.....++++|.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 45566678899999999999999999999999999999998654322211111222334678999999999999999999
Q ss_pred CCCcEEEEeCCCCceeecccCC--CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe-eeEE-EecCCCcceEEEEecC
Q 016257 132 VDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSK 207 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~-~~~~~~~~v~~~~~~~ 207 (392)
.+++|...|+++.+.+...... .+.|+.+..+|..+.|++.+.++.|.+||.+... +... +........+.+.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 9999999999998876544322 2389999999999999999999999999998765 2222 2233445688999999
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCCCceee-eee---cccC---CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKI-GHK---RLLR---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~---~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 280 (392)
....+ +++.+..+-+-+||.+..... ... .... ..-..+.|+|+|..|.+--....-.+||+-+..+..
T Consensus 205 ~~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 205 ETPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred CCcee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 98863 677788888999999865432 111 1111 122467899999988877665666788887755433
Q ss_pred eeecccc------CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 281 WSKRLHL------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 281 ~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
.. ..|. ...+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 281 ~k-~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 281 LK-SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred Ee-ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 22 2321 2357788887664 4999999999999999743
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=2.5e-19 Score=160.82 Aligned_cols=297 Identities=12% Similarity=0.112 Sum_probs=203.2
Q ss_pred ceeeeecCCCCCc--ceeEEEeCCCCC---------CCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC
Q 016257 5 GTVTCGSWIKRPE--NVNLVVLGKSSR---------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP 73 (392)
Q Consensus 5 ~~v~~~~w~~~~~--~~~~~~~g~~~~---------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 73 (392)
-.+++++|.|++. ....+++..... ....+..+.+|+++... .|. ..+. -...|+++.|+|
T Consensus 181 ~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~-----~Pe--~~~~-~~s~v~~~~f~p 252 (555)
T KOG1587|consen 181 RQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPN-----TPE--LVLE-SPSEVTCLKFCP 252 (555)
T ss_pred cceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCC-----Cce--EEEe-cCCceeEEEecc
Confidence 3578888988775 212222222111 01112357777776331 222 2233 367899999999
Q ss_pred -CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCceee--
Q 016257 74 -SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIIL-- 148 (392)
Q Consensus 74 -~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~-- 148 (392)
+..+++.|..+|.|.+||+..+..... .........|..++..+.|..+.. -+++++.||.|..|+++.-....
T Consensus 253 ~~p~ll~gG~y~GqV~lWD~~~~~~~~~-s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 253 FDPNLLAGGCYNGQVVLWDLRKGSDTPP-SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred CCcceEEeeccCceEEEEEccCCCCCCC-cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 556788889999999999988764211 111223345889999999977544 49999999999999886433211
Q ss_pred ---cccC-------CCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee--------eEEEecCCCcceEEEEecCCC
Q 016257 149 ---DEPK-------AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA--------WTFLTRNSDEKIELCRFSKDG 209 (392)
Q Consensus 149 ---~~~~-------~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~ 209 (392)
.... ....+++++|.+ +-..++.|+++|.|.--.-...+. ...+. .+.++|+++.++|-+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIGPVYAVSRNPFY 410 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCcceEeeecCCCc
Confidence 1111 123689999988 556799999999887733222111 11222 245689999999998
Q ss_pred CcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCcee--eeeeecc
Q 016257 210 TKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEI--NHWSKRL 285 (392)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 285 (392)
..+ +.++.|..+++|... ...++..+..+...+++++|||-. ..|+++..||.|.+||+..... .... ..
T Consensus 411 ~k~-----fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-~~ 484 (555)
T KOG1587|consen 411 PKN-----FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-KV 484 (555)
T ss_pred cce-----eeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc-cc
Confidence 873 333339999999988 666777777777779999999975 6688888899999999976432 2222 22
Q ss_pred ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
+ ....+.+.|+++|+.|++|...|.+.++++.
T Consensus 485 ~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 485 C-SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred c-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 3 5677888899999999999999999999996
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=8.9e-19 Score=135.20 Aligned_cols=283 Identities=11% Similarity=0.074 Sum_probs=192.5
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCC--CCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d 84 (392)
|+.-+|+|..+ +++.|.. .+.|.++.+... ....+........+++|+++|+.++|+ .++|++|+ |
T Consensus 13 vf~qa~sp~~~---~l~agn~------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-d 80 (325)
T KOG0649|consen 13 VFAQAISPSKQ---YLFAGNL------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-D 80 (325)
T ss_pred HHHHhhCCcce---EEEEecC------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-C
Confidence 56678999774 4554544 566888888632 222222344555668999999999998 34677764 5
Q ss_pred CeEEEEEEeCCccc---eeeccccCCC---CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257 85 GGCKLFEVYGGATD---INLLAKKMPP---LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (392)
Q Consensus 85 ~~i~iw~~~~~~~~---~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 158 (392)
|.|+-|........ ..+.....+. .-.-..|+++...|..+-++.++.|+.++-||+++|+....+.+|.+.|.
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 99999987544321 1111111000 11224689999999777777777899999999999999999999999999
Q ss_pred EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---------CcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 159 ~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
++.--.....+++|++||++++||.++++++..+.... ...|.+++-+ ..+ +.++....+.+|
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edW------lvCGgGp~lslw 232 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDW------LVCGGGPKLSLW 232 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--Cce------EEecCCCceeEE
Confidence 99886666689999999999999999999988875322 2234444443 343 556667789999
Q ss_pred eCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC-CeEEEEeC
Q 016257 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASK 308 (392)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~ 308 (392)
.+++.++...+.. ...+..+.|.. +.++++++.+.|.-|.+. |.+...+... ....++..|+..- ++|-.++.
T Consensus 233 hLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ag~ 306 (325)
T KOG0649|consen 233 HLRSSESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKFISIAGF 306 (325)
T ss_pred eccCCCceEEEec-ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEEEEeccc
Confidence 9999888766654 56777888854 477788877889999875 3333333222 2345555554332 35556666
Q ss_pred CCeEEEE
Q 016257 309 EWGAMIT 315 (392)
Q Consensus 309 dg~i~iw 315 (392)
.+.+.|+
T Consensus 307 s~~~~i~ 313 (325)
T KOG0649|consen 307 SNKLHIL 313 (325)
T ss_pred ceeeeee
Confidence 6666654
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=149.41 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=188.5
Q ss_pred CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCC
Q 016257 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (392)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (392)
+-+.+.+++|+.. +......+++|...++.++|.. ....+.+++.||+|++||++.......+.....
T Consensus 46 ~lSngsv~lyd~~--------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-- 115 (376)
T KOG1188|consen 46 SLSNGSVRLYDKG--------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-- 115 (376)
T ss_pred EecCCeEEEEecc--------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence 3456779999887 3344456899999999999976 456788999999999999998775554443221
Q ss_pred CCCCCCeEEEEecCCCCEEEEEeC----CCcEEEEeCCCCce-eeccc-CCCCcEEEEEecC-CCCeEEEEcCCCcEEEE
Q 016257 109 LQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRI-ILDEP-KAHKSVLDMDFSL-DSEFLATTSTDGSARIW 181 (392)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vw 181 (392)
...+..+++.+.+++.+++|.. +-.|.+||++..++ +..+. .|+..|+++.|+| +.++|++|+.||-|.+|
T Consensus 116 --~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 116 --SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred --CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 1346778888778888888863 56799999998776 44443 4667999999999 56799999999999999
Q ss_pred ECCCCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC----------CcEE
Q 016257 182 KTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----------PASV 249 (392)
Q Consensus 182 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------~v~~ 249 (392)
|+.....-..+. ..+...|.++.|..++-.. +.+-+......+|+++.+.+...+....- --.-
T Consensus 194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred ecCCCcchhhHHHhhcccceeeeeeeecCCcce----EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 997543211111 1234469999999887321 45556678899999998775443332210 0001
Q ss_pred E-EECC-CCCEEEEEeC-CCcEEEEecC---Cc---eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 250 L-SISL-DGKYLAMGSK-DGDICVVDVK---KM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 250 ~-~~s~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
+ ..+| ++..++.++. -++..++-+. ++ +.+..+..+| ..-|.++.|...+.++.+|++||.+.+|...
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1 1223 3455555544 4566655443 22 3344444446 7789999999888999999999999999963
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.8e-19 Score=148.11 Aligned_cols=206 Identities=14% Similarity=0.183 Sum_probs=166.1
Q ss_pred CCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------ceeecccCCCCcEEEEEecCC-CCeEEEEcCCCcEE
Q 016257 109 LQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL-------RIILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSAR 179 (392)
Q Consensus 109 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~ 179 (392)
..|.++|..++|+| +.+.||+|++|.+|.||++..+ +.+..+.+|...|--++|+|. .+.|++++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 35899999999999 6778999999999999998644 345566788889999999994 46789999999999
Q ss_pred EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCCCCE
Q 016257 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKY 258 (392)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~ 258 (392)
+|++.+++.+.++. |...|.++.|+.+|.. +++.+.|..|+|||.++++.+..-..|.+ .-..+.|-.+|.+
T Consensus 158 iWnv~tgeali~l~--hpd~i~S~sfn~dGs~-----l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 158 IWNVGTGEALITLD--HPDMVYSMSFNRDGSL-----LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred EEeccCCceeeecC--CCCeEEEEEeccCCce-----eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 99999999888877 5568999999999998 89999999999999999999887766654 3445667778886
Q ss_pred EEEEe---CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE-EEeCCCeEEEEEeecCc
Q 016257 259 LAMGS---KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA 321 (392)
Q Consensus 259 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 321 (392)
+.+|- .+..+-+||....+....+........|.---|.+|..+++ +|-.|+.||-|.+....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 65554 46789999987765443333333366788788889888665 55579999999997554
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-18 Score=157.29 Aligned_cols=292 Identities=16% Similarity=0.221 Sum_probs=206.6
Q ss_pred eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC-ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (392)
Q Consensus 60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 138 (392)
..|.-.+++.++||+++++|+|..||+|.+|.--.. ........-+ =|...|.+++|+++|.+|++|+..+.+.+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH----WHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE----ecccccceeEEecCCceEeecccceEEEE
Confidence 346777999999999999999999999999975441 1111110000 16789999999999999999999999999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC----------CCcceEEEEecCC
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKD 208 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~ 208 (392)
|.+++++ ..-++.-..+|..+.++||+.+.+....|..|.+....+.....++.+. ...-.+.++++|.
T Consensus 278 Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 278 WQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred EeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 9999988 3345566679999999999999999999999999987655443333221 2234567889995
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-----------cCCCcEEEEECCCCCEEEEEeC--------CC--c
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----------LRKPASVLSISLDGKYLAMGSK--------DG--D 267 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~--------dg--~ 267 (392)
.+. ++..+..+.|.+||+-+.+.+..+.. +.-.++.++.+..|.+++|.-. || .
T Consensus 357 ~~~-----~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 357 TNS-----LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred CCc-----eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 554 68888999999999987765544321 1224677788888999998642 32 4
Q ss_pred EEEEecCC----ceeeeeeeccccCcceEEEEE-eeCCC-eEEEEeCCCeEEEEEeecCccc----cceeee--------
Q 016257 268 ICVVDVKK----MEINHWSKRLHLGTSIALVEF-CPTQR-VVLTASKEWGAMITKLTVPADW----KEWQIY-------- 329 (392)
Q Consensus 268 i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~-s~~~~-~l~~~~~dg~i~iw~~~~~~~~----~~~~~~-------- 329 (392)
+++|-... ..+...+...| +..+...++ ++... ..++++.||.+++|-+...... ..|..-
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH-~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~ 510 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPH-GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT 510 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCC-CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccC
Confidence 78896543 34455556678 444444444 44444 8999999999999999533221 233211
Q ss_pred eeeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257 330 SLLLALFLASAVVFYIFFENSDSFWNFPVARNQ 362 (392)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~ 362 (392)
..-...+...+.+++.++++.|.+||..+.+.+
T Consensus 511 ~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l 543 (792)
T KOG1963|consen 511 PITALCFSQDGSLLAVSFDDTITIWDYDTKNEL 543 (792)
T ss_pred cccchhhcCCCcEEEEecCCEEEEecCCChhhh
Confidence 111222334558889999999999999885443
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=6e-18 Score=154.04 Aligned_cols=289 Identities=21% Similarity=0.299 Sum_probs=217.0
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc-cceeeccccCCCCCCCCCeEEEEe-cCCCC-EEEEEeC-C
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF-SVDGS-RFAAGGV-D 133 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~-~l~~~~~-d 133 (392)
.+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....+.... ...+..+.+ ++++. .++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH------DSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC------CCceeeEEEECCCcceEEeccCCCC
Confidence 466789999999999999999999999999999998775 222222211 135666666 78777 5555444 8
Q ss_pred CcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257 134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 134 g~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
+.+.+|+... .........|...|..++|+|+++.+++++. |+.+++|++..++.+..+..+ ...+.+++|+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGL 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcce
Confidence 9999999987 6677777888889999999999998888885 999999999987777777764 457999999999872
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceeee-eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-eeeeeccccCc
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT 289 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 289 (392)
.+++++.|+.+.+||...+.... .+..|.... ...|+|++.++++++.|+.+++|+++.... .... ..| ..
T Consensus 213 ----~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~ 285 (466)
T COG2319 213 ----LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH-SS 285 (466)
T ss_pred ----EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC-Cc
Confidence 14455899999999998777766 566666664 348999998999999999999999987664 3333 567 88
Q ss_pred ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee---eeeeeeeee-eec-eEEEEe-eecceeeeecccccc
Q 016257 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ---IYSLLLALF-LAS-AVVFYI-FFENSDSFWNFPVAR 360 (392)
Q Consensus 290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~-~~d~~i~~W~~~~~~ 360 (392)
.+.++.|+|++..+++++.|+.+++|++.......... ......... ... ..+..+ ..|+.+++|+.....
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 99999999988888889999999999877554322221 000011111 111 233333 467889999988776
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3.6e-19 Score=146.89 Aligned_cols=290 Identities=14% Similarity=0.136 Sum_probs=190.8
Q ss_pred CCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCcccee--eccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 63 ~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
..+|..+.|.++.. .|++|+.|..|++|.+........ ...-....-.|...|+++.|+|+|++|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999776 999999999999999977654331 111111223588999999999999999999999999999
Q ss_pred eCC--------C--------CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257 140 HWP--------S--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (392)
Q Consensus 140 d~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~ 203 (392)
-.. + .........|...|+.++|+|++.++++++.|..+++||+..++....+..|. ..+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~-~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE-HYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-ccccee
Confidence 765 2 11223345566789999999999999999999999999999999988887654 479999
Q ss_pred EecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-------------------ccC----CCcEEEEECCCCCEEE
Q 016257 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LLR----KPASVLSISLDGKYLA 260 (392)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------------~~~----~~v~~~~~s~~~~~l~ 260 (392)
+|.|-+++ +++-+.|...+.+.+...+.+.... .|+ .-...++|+|+|.+++
T Consensus 172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999987 6666667666666654332211110 011 1133578999999998
Q ss_pred EEeC----CC-----cEEEEecCCceeeeeeeccccCcceEEEEEee------------------CCCeEEEEeCCCeEE
Q 016257 261 MGSK----DG-----DICVVDVKKMEINHWSKRLHLGTSIALVEFCP------------------TQRVVLTASKEWGAM 313 (392)
Q Consensus 261 ~~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~dg~i~ 313 (392)
+.+. .+ ..++|+-+..+.+....... ..+...+.|+| .+-.++.++.+ .+.
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svy 324 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVY 324 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCceeecCCC-CcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEE
Confidence 8642 22 23555444322221111222 34445555554 23345555555 999
Q ss_pred EEEeecCccccce-eeee---eeeeeeeeceEEEEeeecceeeeecccccc
Q 016257 314 ITKLTVPADWKEW-QIYS---LLLALFLASAVVFYIFFENSDSFWNFPVAR 360 (392)
Q Consensus 314 iw~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~ 360 (392)
+||.+...++... .+-+ ...+.......++..+.||-..+-.++..+
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 9999876665432 1111 112222234466666678766655555443
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-18 Score=133.27 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=177.7
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccc---cCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 140 (392)
..|.+-+++|.+++|++|+.+|.|.++.+++.......... ..+...|.++++.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35677789999999999999999999998754322211111 12224589999999998 34677765 69999998
Q ss_pred CCCCce------eecc--cCC-----CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEe-c
Q 016257 141 WPSLRI------ILDE--PKA-----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF-S 206 (392)
Q Consensus 141 ~~~~~~------~~~~--~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~ 206 (392)
.+.... ..+. +.+ -..|+++...|..+-++.++.|+.++-||+++|+..+++.+|.+ .+.+++- +
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecc
Confidence 754322 1111 111 12689999999888888888999999999999999999998866 7999988 4
Q ss_pred CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC----------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----------KPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 276 (392)
.+++ +++|++||++++||.++++.+..+...+ ..|-+++ -+..++++|+. ..+.+|++++.
T Consensus 167 ~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 167 ANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred cCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCC
Confidence 4455 7999999999999999999877664322 2344444 45668888764 56999999999
Q ss_pred eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 277 EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
+....+.. ..++..+.|..| .+++++..+.+.-|.+..
T Consensus 238 e~t~vfpi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 238 ESTCVFPI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CceEEEec---ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 88877743 568889999654 788888888999998863
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=4.4e-19 Score=142.17 Aligned_cols=228 Identities=15% Similarity=0.208 Sum_probs=167.6
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
-.||+|.+|++|.+. ++++.. .+.+.||...... .....++++.|...|++++|+|..+.|++++.
T Consensus 10 ~~pitchAwn~drt~---iAv~~~------~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQ---IAVSPN------NHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCCCce---EEeccC------CceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccC
Confidence 469999999999854 443333 4568888876442 24556789999999999999999999999999
Q ss_pred CCeEEEEEEe-CCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee----ecccCCCCcEE
Q 016257 84 NGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVL 158 (392)
Q Consensus 84 d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~ 158 (392)
|..-++|... .++-... ...+.++...+++.|+|.+++|++|+.-..|.||-++...-- ..-......|.
T Consensus 76 drnayVw~~~~~~~Wkpt-----lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPT-----LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred CCCccccccCCCCeeccc-----eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 9999999984 3332222 222347789999999999999999999999999987654321 11123345799
Q ss_pred EEEecCCCCeEEEEcCCCcEEEEECC-----C-------------CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 159 DMDFSLDSEFLATTSTDGSARIWKTE-----D-------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 159 ~i~~~~~~~~l~~~~~d~~i~vwd~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
+++|+|++-+|+.|+.|+..++|..- . |+.+..+. ...+.+..+.|+|+|.. ++-.
T Consensus 151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~-----lawv 224 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNR-----LAWV 224 (361)
T ss_pred eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCE-----eeEe
Confidence 99999999999999999999999642 1 11122221 34558999999999998 7888
Q ss_pred CCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCC
Q 016257 221 GDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDG 256 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~ 256 (392)
+.|..+.+-|..... .+.......-+..++.|-.+.
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred cCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence 899999999987654 233333334567777775443
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.6e-20 Score=158.86 Aligned_cols=262 Identities=15% Similarity=0.149 Sum_probs=186.6
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
|+.++|+|-.. .+++++ .++++.+|.++.....-...-....+|.+|.++|.|++..+++..+++|+-||+
T Consensus 297 ir~l~~~~sep---~lit~s------ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 297 IRALAFHPSEP---VLITAS------EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhhhcCCCCC---eEEEec------cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 56677777653 344444 478899999954333333344566789999999999999999999999999999
Q ss_pred EEEEEEeCCccceeec---cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee-ecccCCCCcEEEEEe
Q 016257 87 CKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDF 162 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~i~~ 162 (392)
|+.|++....-..... ........|.+.|+.+++|+....|++++.||+++.|+....... ......++.-.++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 9999886332211111 111223458899999999999889999999999999998665551 112222334556666
Q ss_pred cCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecC------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257 163 SLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (392)
Q Consensus 163 ~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 235 (392)
-... ...++...-+.-.++++........+... ....+..+.++|.... .+++.+++.|+++|..+++
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccccc
Confidence 4332 22233323333344444444444333221 1124677888998875 7899999999999999999
Q ss_pred eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (392)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 282 (392)
.+.....|...++++++.|+|-+|++++.|+.+++|.+....+....
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 99999999999999999999999999999999999998776655433
No 186
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.3e-18 Score=138.21 Aligned_cols=289 Identities=17% Similarity=0.176 Sum_probs=185.1
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-CCCCCeeEEEEcCCC-CeEEEEeC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSG-DDFVCSTT 83 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~-~~l~~~~~ 83 (392)
-++-++|+++-- .+++ ++.|..|++|+-.... . ..++ ..+..|+|++|-|.+ ..|+.|+.
T Consensus 100 dlr~~aWhqH~~--~fav-------a~nddvVriy~ksst~-----p----t~Lks~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 100 DLRGVAWHQHII--AFAV-------ATNDDVVRIYDKSSTC-----P----TKLKSVSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred ceeeEeechhhh--hhhh-------hccCcEEEEeccCCCC-----C----ceecchhhcceeEEEeccCCcceeeeeec
Confidence 356789998542 2333 3346778887654311 1 1122 135689999999954 57888888
Q ss_pred CCeEEEEEEeCCccceee----ccccCCCC--CCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeecccCCCCc
Q 016257 84 NGGCKLFEVYGGATDINL----LAKKMPPL--QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKS 156 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~ 156 (392)
.| |.+|........... .......+ ..+.+|+++.|++||..+++++. |..|+|||..++..+.-....-+.
T Consensus 162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred ce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 88 999987543221111 11111111 13468999999999999999875 678999999998876555556678
Q ss_pred EEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-
Q 016257 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN- 235 (392)
Q Consensus 157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~- 235 (392)
++-+.||||+.+|++++-|+..++|...............+ .|...+|+|+|..++ ++.+....++-.......
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLL----f~~sgsp~lysl~f~~~~~ 315 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLL----FACSGSPRLYSLTFDGEDS 315 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEE----EEEcCCceEEEEeecCCCc
Confidence 99999999999999999999999996544333333333333 799999999999743 333333333222111100
Q ss_pred ---------e---eee---------ecccCCCcEEEEECCCCCEEEEEeCCC--------cEEEEecCCceeeeeeeccc
Q 016257 236 ---------K---IGH---------KRLLRKPASVLSISLDGKYLAMGSKDG--------DICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 236 ---------~---~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~ 286 (392)
. +.. .+...++..+++|.|.|.+||+.-..+ .|.+||.+.........-+-
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~ 395 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM 395 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc
Confidence 0 000 011246788999999999999876543 47778877655444332111
Q ss_pred -cCcceEEEEEee---CCCeEEEEeCCCeEEEEEee
Q 016257 287 -LGTSIALVEFCP---TQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 287 -~~~~i~~~~~s~---~~~~l~~~~~dg~i~iw~~~ 318 (392)
.......++|+| ++.+|..+=..|.+.-|.+.
T Consensus 396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 023355677776 56677777778888877765
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=2.1e-18 Score=155.81 Aligned_cols=220 Identities=18% Similarity=0.165 Sum_probs=149.9
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CC
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD 133 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 133 (392)
.+..|...+..+.|+|||+.|+.++.+ ..|++||+.+++... +.. ..+....++|+|||+.|+.++ .+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~-------~~g~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VAS-------FRGHNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Eec-------CCCccCceeECCCCCEEEEEEecC
Confidence 456678889999999999999987643 369999997764321 111 112334689999999888764 67
Q ss_pred CcEEEE--eCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257 134 GHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (392)
Q Consensus 134 g~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (392)
|.+.|| |+.+++. ..+..+...+....|+|||+.|+.++ .++...+|++...........+ .. ....|+|+++
T Consensus 270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~--~~~~~SpDG~ 345 (429)
T PRK01742 270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG--YSAQISADGK 345 (429)
T ss_pred CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC--CCccCCCCCC
Confidence 765555 6655554 34445555678899999999877554 5788888877532221222222 22 4578999999
Q ss_pred cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC--CceeeeeeeccccC
Q 016257 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLG 288 (392)
Q Consensus 211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 288 (392)
. ++..+.++ +.+||+.+++....... .....+.|+|||++|+.++.++...+|++. +++....+ ..| .
T Consensus 346 ~-----ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~-~ 415 (429)
T PRK01742 346 T-----LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGS-D 415 (429)
T ss_pred E-----EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCC-C
Confidence 7 44444444 66699988765432222 233567899999999999999988888753 46655555 356 6
Q ss_pred cceEEEEEeeC
Q 016257 289 TSIALVEFCPT 299 (392)
Q Consensus 289 ~~i~~~~~s~~ 299 (392)
+.+..++|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77889999984
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=9.4e-19 Score=153.24 Aligned_cols=267 Identities=14% Similarity=0.177 Sum_probs=199.2
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 144 (392)
.|+.++|-|||..|+.+..+. +.+||...+.....+. .|...|++++|+.||+.+++|+.|..|.+|+-+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~ndG~llqtLK-------gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTSDGTLLQPLK-------GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCCCcccccccc-------cccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 799999999999988875554 9999999887655443 37889999999999999999999999999986533
Q ss_pred ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (392)
Q Consensus 145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (392)
..+ ...|.+.|.|+.|+|-...|++++-. ..-+|........+ . .....+.+++|..||++ ++.|-.+|
T Consensus 86 G~L--kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~--kss~R~~~CsWtnDGqy-----lalG~~nG 154 (1081)
T KOG1538|consen 86 GIL--KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H--KSSSRIICCSWTNDGQY-----LALGMFNG 154 (1081)
T ss_pred cee--eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h--hhheeEEEeeecCCCcE-----EEEeccCc
Confidence 222 24577799999999999999998863 46788875433222 1 12346899999999997 78899999
Q ss_pred EEEEEeCCCceee--eeecccCCCcEEEEECCCC-----CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257 225 LLAVYDISTWNKI--GHKRLLRKPASVLSISLDG-----KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 225 ~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 297 (392)
+|.+-+....+.. ....+...+|.+++|+|.. ..+++.....++.+|.+.....-.. +.- +....|+.+-
T Consensus 155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~--r~L-~FdP~CisYf 231 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD--RAL-NFDPCCISYF 231 (1081)
T ss_pred eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--ccC-CCCchhheec
Confidence 9999865533332 2223467899999999963 5788888888899998865433222 122 5567889999
Q ss_pred eCCCeEEEEeCCCeEEEEEeecC-----cccc--ceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257 298 PTQRVVLTASKEWGAMITKLTVP-----ADWK--EWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV 358 (392)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~ 358 (392)
++|.+++.|+.|+.+.++.-+.- .+.. .|.+...+++. .+..++.||+|-.+++-.
T Consensus 232 ~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ-----~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ-----YVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc-----eEEEEEccCeeehhhhHH
Confidence 99999999999999999865421 1222 44555555544 566677899999888754
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=2.7e-18 Score=135.89 Aligned_cols=248 Identities=17% Similarity=0.205 Sum_probs=178.8
Q ss_pred CCCeeEEEEcC--C-CCeEEEEeC----CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-----EEEEE
Q 016257 63 EGDPMTIAVNP--S-GDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-----RFAAG 130 (392)
Q Consensus 63 ~~~v~~~~~sp--~-~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~ 130 (392)
.-.++++.|+. + +.+||.|+. .+.|.|..+..... ++. ....+.|.-+++.+.|.|+.. +||+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--e~~--~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs 119 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--ELV--EDANFDHPYPVTKLMWIPDSKGVYPDLLATS 119 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--cee--ccCCCCCCCCccceEecCCccccCcchhhcc
Confidence 35688899983 2 347888873 45688877763322 111 223356889999999999763 56654
Q ss_pred eCCCcEEEEeCCCC--ceee-------cccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee--eEEEecCCCc
Q 016257 131 GVDGHLRIMHWPSL--RIIL-------DEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDE 198 (392)
Q Consensus 131 ~~dg~i~i~d~~~~--~~~~-------~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~ 198 (392)
+..+|+|.+... +... +...+..++++..|+. +-++|.+++-|.+..|||++++.. +++-...|+.
T Consensus 120 --~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 120 --SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred --cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 357999998632 2111 0112334899999987 778899999999999999998633 3333333455
Q ss_pred ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec---ccCCCcEEEEECCC-CCEEEEEeCC-CcEEEEec
Q 016257 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLD-GKYLAMGSKD-GDICVVDV 273 (392)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~-~~~l~~~~~d-g~i~iwd~ 273 (392)
.|..++|...+... +++.+.||.+++||+|..+.-..+. ....+...++|+++ -+++|+-..| ..|.|.|+
T Consensus 198 EV~DIaf~~~s~~~----FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDV----FASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ceeEEEeccCccce----EEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 89999999977763 5889999999999999765432222 22457778899885 4778876655 56999999
Q ss_pred CCceeeeeeeccccCcceEEEEEeeCC-CeEEEEeCCCeEEEEEeecCc
Q 016257 274 KKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 321 (392)
+.........+.| .+.|+.++|.|.. ..|+++++|..+.+||+....
T Consensus 274 R~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 274 RVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 9876555445789 9999999999965 489999999999999998543
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.6e-17 Score=148.68 Aligned_cols=325 Identities=12% Similarity=0.105 Sum_probs=227.6
Q ss_pred cCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC---eEEEEeCCCeE
Q 016257 11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGC 87 (392)
Q Consensus 11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~~d~~i 87 (392)
.|++|... .++. ..+.|.||... +..+...+.+|..++..+.+.|... ++++++.+|.|
T Consensus 23 vfSnD~k~-l~~~---------~~~~V~VyS~~--------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 23 VFSNDAKF-LFLC---------TGNFVKVYSTA--------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTI 84 (792)
T ss_pred ccccCCcE-EEEe---------eCCEEEEEecc--------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccE
Confidence 46777654 2333 35668899877 5666678999999999999988544 67789999999
Q ss_pred EEEEEeCCccce--------------------------------------------------------------------
Q 016257 88 KLFEVYGGATDI-------------------------------------------------------------------- 99 (392)
Q Consensus 88 ~iw~~~~~~~~~-------------------------------------------------------------------- 99 (392)
++||...+....
T Consensus 85 ~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~ 164 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPK 164 (792)
T ss_pred EEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCc
Confidence 999987664300
Q ss_pred ----------------------------eeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--C--cee
Q 016257 100 ----------------------------NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L--RII 147 (392)
Q Consensus 100 ----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~--~~~ 147 (392)
+..........|...+++.++||+++++++|..||.|.+|.--. + ...
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 00000011123555678999999999999999999999996322 1 123
Q ss_pred ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257 148 LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (392)
Q Consensus 148 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (392)
..+.=|+..|.+++|+++|.+|++|+..+.+.+|.+.+++ +++...-..+|..+.++||+.. ......|+.|.
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~-----~sl~~~DNqI~ 317 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDL-----YSLVLEDNQIH 317 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCe-----EEEEecCceEE
Confidence 3445577899999999999999999999999999999988 4555556679999999999996 45566699999
Q ss_pred EEeCCCceeeeeecc-----------cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec----ccc-----
Q 016257 228 VYDISTWNKIGHKRL-----------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----LHL----- 287 (392)
Q Consensus 228 v~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~----- 287 (392)
+....+......+.+ ..+-.+.++++|.-+.++..+..|.|.+||+-+.+.+..+.. .+.
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 988765443322221 133456789999777888888999999999988665544321 110
Q ss_pred CcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeee----------eeeeeeee--eceEEEEe
Q 016257 288 GTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIY----------SLLLALFL--ASAVVFYI 345 (392)
Q Consensus 288 ~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~ 345 (392)
.-.++.++.+-.|.+++|.-. .-.+++|....... .|.+. +....... .+..++++
T Consensus 398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k--t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK--TFILNTKINNPHGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc--eeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence 235778888888999988753 23678887764322 22111 11111111 12267788
Q ss_pred eecceeeeecccccccc
Q 016257 346 FFENSDSFWNFPVARNQ 362 (392)
Q Consensus 346 ~~d~~i~~W~~~~~~~~ 362 (392)
+.|+.+++|.+....++
T Consensus 476 ~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNI 492 (792)
T ss_pred ccCCeEEEEEEeccccc
Confidence 89999999999655544
No 191
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=8e-19 Score=149.89 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=174.9
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE-EeCCcc-ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE-VYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~-~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 138 (392)
.|...+.|+.|+.+...+.++ .|..+.+|. +.+... .........+...|.++ .+..=-.....|+.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEE
Confidence 356677899998776665554 555555554 433221 11111111122122111 00000112346888889999999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
.+ +.++.-.....|.+.+.+-.|+|||.-|+++++||.|++|.- +|....++. ....+|+|++|.|+.... ++
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~v----l~ 162 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSI----VF 162 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCce----EE
Confidence 87 455555566778889999999999999999999999999984 443333332 345589999999999862 22
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
+..+.+.+=.+.....+-..+.|++-|.++.|++...++++|++|-+.++||.....+... ..| +.+|++++|.|
T Consensus 163 --c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~-ey~ITSva~np 237 (737)
T KOG1524|consen 163 --CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAE-EYAITSVAFNP 237 (737)
T ss_pred --ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chh-ccceeeeeecc
Confidence 2345677767766666678899999999999999999999999999999999765544433 466 88999999999
Q ss_pred CCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeee
Q 016257 299 TQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFL 337 (392)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 337 (392)
+ +.++.++.. +++ +..+..-.++.+.+++++...
T Consensus 238 d-~~~~v~S~n-t~R---~~~p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 238 E-KDYLLWSYN-TAR---FSSPRVGSIFNLSWSADGTQA 271 (737)
T ss_pred c-cceeeeeee-eee---ecCCCccceEEEEEcCCCcee
Confidence 9 667777665 565 444444456666666665543
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=7.1e-20 Score=163.82 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=194.9
Q ss_pred EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (392)
Q Consensus 56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (392)
...+.+|.++|+|+.|...|.++++|+.|..++||..++..+..... .|.+.++.++.+.+...+++++.|..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-------Ghs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-------GHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------CCccccchhccchhhhhhhhcccCce
Confidence 34578999999999999999999999999999999988887655443 37889999999999999999999999
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE---EecCCCcceE-----------
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIE----------- 201 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~v~----------- 201 (392)
|++|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.-.+.. +.......+.
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 9999999999999999999999999999954 778899999999871100000 0000000111
Q ss_pred ---------------EEEecCCCCcceE-------EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CE
Q 016257 202 ---------------LCRFSKDGTKPFL-------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KY 258 (392)
Q Consensus 202 ---------------~~~~~~~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 258 (392)
+++|...... |. ...+++-.+-.+.+|++.++.....+.+|...+..+.++|-+ ..
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 1111111110 00 012334456678899999998888889999999999999965 45
Q ss_pred EEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 259 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
..+++.||...|||+-.+..++....+| +.+..-+||+||+.++....-|.++|........
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 5678899999999999988887776665 6788889999999999988889999987654443
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.4e-16 Score=139.68 Aligned_cols=246 Identities=13% Similarity=0.167 Sum_probs=156.5
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT- 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~- 83 (392)
+....++++|+++. |.+ +.. .++.|.+|.++.++ .+. ..... ...+.+..++|+|++++|++++.
T Consensus 35 ~~~~~l~~spd~~~--lyv-~~~-----~~~~i~~~~~~~~g-~l~----~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 35 GQVQPMVISPDKRH--LYV-GVR-----PEFRVLSYRIADDG-ALT----FAAES-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCCccEEECCCCCE--EEE-EEC-----CCCcEEEEEECCCC-ceE----Eeeee-cCCCCceEEEECCCCCEEEEEEcC
Confidence 34566788998754 222 221 24668888887322 111 11111 12345788999999998888764
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeec------ccCCCCc
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILD------EPKAHKS 156 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~------~~~~~~~ 156 (392)
++.|.+|++.+......... ...+......++++|+++++++++ .++.|.+||+++...+.. .......
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~----~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~ 176 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQ----IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG 176 (330)
T ss_pred CCeEEEEEECCCCCCCCcee----eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence 78899999964332211111 112234567889999999886655 569999999976432211 0111235
Q ss_pred EEEEEecCCCCeEEEEcC-CCcEEEEECCC--C--eeeEEEecC-----CCcceEEEEecCCCCcceEEEEEEe-CCccE
Q 016257 157 VLDMDFSLDSEFLATTST-DGSARIWKTED--G--VAWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQR-GDKAL 225 (392)
Q Consensus 157 i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~--~--~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~ 225 (392)
...+.|+|++++++++.. +++|.+|+++. + +.+..+... .......+.++|++++ ++++ ..++.
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~-----lyv~~~~~~~ 251 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH-----LYACDRTASL 251 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE-----EEEecCCCCe
Confidence 678999999999988876 89999999973 2 223333211 1112336889999997 3444 45789
Q ss_pred EEEEeCCCce----eeeeecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecC
Q 016257 226 LAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK 274 (392)
Q Consensus 226 i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 274 (392)
|.+|++.... .+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999986432 2222222 234567899999999998875 8899999874
No 194
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=5.1e-17 Score=130.38 Aligned_cols=241 Identities=14% Similarity=0.169 Sum_probs=172.1
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCC------CcEE
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVD------GHLR 137 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d------g~i~ 137 (392)
...+++|+.|...+++|..+| .+||+.+.-+....... ....-.+.-+-| -.++|+ +|+.+ .++.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-----~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-----IDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-----ccCchhhhhHhh--hhceEEEecCCCCCCCCCceEE
Confidence 445599999999999999888 99999876332111100 000111122222 223443 34333 5799
Q ss_pred EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (392)
Q Consensus 138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (392)
|||=...+++. ......+|.++.+.++ .|++.- .+.|+||... +.+.++.+....+ +-.-++..|.....++
T Consensus 79 IWDD~k~~~i~-el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~~k~~L-- 151 (346)
T KOG2111|consen 79 IWDDLKERCII-ELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTSNKSLL-- 151 (346)
T ss_pred EEecccCcEEE-EEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCCCceEE--
Confidence 99954445543 3345578999999865 455554 4789999987 4556666543321 2234555665544222
Q ss_pred EEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCc-EEEEecCCceeeeeeeccccCcceEE
Q 016257 217 TVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 217 ~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
..-|-.-|.|.|-|+...+. ...+..|...|.|++.+-+|..+|+++..|+ |||||..+++.+..+.++.....|.+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 34556679999999987655 4678899999999999999999999999998 79999999999999988876789999
Q ss_pred EEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 294 VEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
++|||++.+|+++|+.|++.|+.+...
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999999854
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=8.4e-18 Score=143.74 Aligned_cols=207 Identities=11% Similarity=0.080 Sum_probs=160.9
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 155 (392)
+.++.++.||.+.|.+-.. +.... ...|.+.+.+-.|+|||.-|+++++||.|++|. ++|-....+.....
T Consensus 76 d~~~i~s~DGkf~il~k~~-rVE~s-------v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RVERS-------ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEecccc-hhhhh-------hhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence 4678888999988876432 22111 123788999999999999999999999999998 45544434444556
Q ss_pred cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 235 (392)
+|+|++|.|+.+.++.+.. +.+.+=.+.....+-.+..| ++-|.++.|++.... ++++++|-..++||-. +.
T Consensus 147 ~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~l-----I~sgGED~kfKvWD~~-G~ 218 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSNI-----IASGGEDFRFKIWDAQ-GA 218 (737)
T ss_pred eeEEEEECCCCCceEEecC-CeEEEeecccccceeEEecc-CcEEEEeecCccccc-----eeecCCceeEEeeccc-Cc
Confidence 8999999998887776654 66777777766666667665 558999999999986 8999999999999976 45
Q ss_pred eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
.+.....|+.+|++++|.|+ +.++.++.+ +++ +.... .+.|..++||+||..+++|+..|.+.+
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPR-VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCC-ccceEEEEEcCCCceeeccccCceEEE
Confidence 66677788999999999999 666766643 344 22233 788999999999999999999887765
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-17 Score=134.59 Aligned_cols=270 Identities=11% Similarity=0.105 Sum_probs=185.1
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeecc--c
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDE--P 151 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~ 151 (392)
..+|++...|.|++||..+++....+.. +...++.+.|.. ..+.+.+++.||+|++||++......++ .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 5788999999999999999876666554 345667888876 4678999999999999999876654333 2
Q ss_pred CCC-CcEEEEEecCCCCeEEEEc----CCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257 152 KAH-KSVLDMDFSLDSEFLATTS----TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (392)
Q Consensus 152 ~~~-~~i~~i~~~~~~~~l~~~~----~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (392)
.+. .+..+++..-.++.+++|+ .+-.+.+||+|..+. +..+...|...|+++.|+|....+ +++|+.||.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL 189 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL 189 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence 233 2566777766777787775 356799999998776 777776677789999999998764 799999999
Q ss_pred EEEEeCCCcee---eeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecccc-----------Ccc
Q 016257 226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------GTS 290 (392)
Q Consensus 226 i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~ 290 (392)
+.+||++.... +.....+...|.++.|..++ +.|.+-+......+|+++.+.....+..... ..-
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 99999986432 33334566789999999877 5688888899999999998775444322110 011
Q ss_pred eEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeee----------eeeeeeeeeceEEEEeeecceeeeeccc
Q 016257 291 IALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIY----------SLLLALFLASAVVFYIFFENSDSFWNFP 357 (392)
Q Consensus 291 i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~i~~W~~~ 357 (392)
|... ...++..++.++. -|...++-+........-... ..-..+......+++++-||.+.+|..+
T Consensus 270 I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 270 INEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1111 1123345555444 677777766532111110000 0111112456678888999999999953
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.81 E-value=2e-16 Score=138.43 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=165.7
Q ss_pred CceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-
Q 016257 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG- 131 (392)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~- 131 (392)
......+.........+.|+|||+++++++.||.|.++|+.+.+...+... ......+++|+||++++++.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--------G~~~~~i~~s~DG~~~~v~n~ 97 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--------GGNPRGIAVSPDGKYVYVANY 97 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------SSEEEEEEE--TTTEEEEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------CCCcceEEEcCCCCEEEEEec
Confidence 344445654444445678999999999999999999999999986666543 23568999999999998775
Q ss_pred CCCcEEEEeCCCCceeecccCC-------CCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257 132 VDGHLRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~ 203 (392)
.++.+.++|.++.+.+..+... ...+..+..+|....++..- +.+.|.+.|....+.+..-...........
T Consensus 98 ~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 98 EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 5899999999999887665432 23577888888887555554 458888888876654433222233467889
Q ss_pred EecCCCCcceEEEEEEeCCccEEEEEeCCCceee----------------------------------------------
Q 016257 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI---------------------------------------------- 237 (392)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~---------------------------------------------- 237 (392)
.|+|++++. +++....+.|.++|.++++.+
T Consensus 178 ~~dpdgry~----~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 178 GFDPDGRYF----LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp EE-TTSSEE----EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred ccCccccee----eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 999999863 233444557777777664332
Q ss_pred ---------eeecccCCCcEEEEECCCCCEEEEE----eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE
Q 016257 238 ---------GHKRLLRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304 (392)
Q Consensus 238 ---------~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 304 (392)
+.+.....+ ..+..+|+++++++. ...+.|.++|.++.+....+.... ...+..+.|+++|+.+.
T Consensus 254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEE
T ss_pred chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEE
Confidence 111111222 457779999999988 345889999999998877764433 44599999999999655
Q ss_pred EEeC--CCeEEEEEeecCcccccee
Q 016257 305 TASK--EWGAMITKLTVPADWKEWQ 327 (392)
Q Consensus 305 ~~~~--dg~i~iw~~~~~~~~~~~~ 327 (392)
.+.. ++.|.++|..+.+......
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 4443 3479999998776654444
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=1e-17 Score=134.42 Aligned_cols=227 Identities=11% Similarity=0.045 Sum_probs=174.6
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
-.++|+|.+|++|+..+|.+..+..|.||.....+.-.... ...+|...|+.+.|+|..+.|++++.|..-++|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h----tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH----TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceece----ehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 35789999999999999999999999999988766222111 11247889999999999999999999999999998
Q ss_pred CCC---ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee---EEEecCCCcceEEEEecCCCCcceEE
Q 016257 142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 142 ~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
..+ ++...+..+....+++.|+|.++.|++|+..+.|.||-.+..+.- +.+..+....|.++.|+|++-.
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL---- 160 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL---- 160 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce----
Confidence 432 345566778889999999999999999999999999988654432 2233444567999999999986
Q ss_pred EEEEeCCccEEEEEeCCC------------------ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257 216 CTVQRGDKALLAVYDIST------------------WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 277 (392)
+++|+.|+..+++..-- ++.+.+.....+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 161 -laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 161 -LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred -ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 78999999999986421 12233333456789999999999999999999999999987764
Q ss_pred -eeeeeeccccCcceEEEEEeeC
Q 016257 278 -INHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 278 -~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
........ .-+..++.|-.+
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise 260 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISE 260 (361)
T ss_pred hhccchhhc--cCCceeeEeecC
Confidence 22222222 356677777654
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=137.25 Aligned_cols=291 Identities=9% Similarity=0.042 Sum_probs=202.9
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCCCCeEEEEe
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~ 82 (392)
-|-|.++.|+.++ .+++.|+. +-.+.+|.++..-... .+...... ..|...|.|++|....++|++|.
T Consensus 56 ~GCiNAlqFS~N~---~~L~SGGD------D~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 56 TGCINALQFSHND---RFLASGGD------DMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred ccccceeeeccCC---eEEeecCC------cceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 4678999999986 57887776 4557899887432221 22222222 34568999999999889999999
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee---ecccCCCCcEEE
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLD 159 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~ 159 (392)
.+++|...|+++.+.+..+... ...+.|+.+..+|-.+.|++.+.++.|.+||.+..... ............
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~-----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANEN-----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred CcceeEeeecccceeeeeeccc-----CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 9999999999988754433221 13468999999998889999999999999999865522 122233447888
Q ss_pred EEecCC-CCeEEEEcCCCcEEEEECCCCee-eEEE---ec-CC-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 160 MDFSLD-SEFLATTSTDGSARIWKTEDGVA-WTFL---TR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 160 i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~-~~~~---~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
+.|+|. ..+|++.+..+-+-+||.+.... +... .. +. ...-.++.|+|+|.+ +++--....-.+||+-
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-----~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-----FMSIRRGKCPLYFDFI 274 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-----ehhhhccCCCEEeeee
Confidence 999994 46788888889999999986432 1111 00 00 112356789999997 4444444455677877
Q ss_pred CceeeeeecccC-------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc----------e------------eeeeee
Q 016257 233 TWNKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKM----------E------------INHWSK 283 (392)
Q Consensus 233 ~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~------------~~~~~~ 283 (392)
+..+......|. ..+.+++|-.| ..+++|+.+-.|++|.+... . ......
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 655432222222 24556777655 44999999999999987531 0 011224
Q ss_pred ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257 284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 284 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 317 (392)
++| .+-+..+.|+|...+|++.+..+.++||.-
T Consensus 354 rGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 354 RGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecc-cccccceeecCCcceEeccchhhheecccc
Confidence 688 889999999999999999999999999954
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=3.5e-19 Score=149.45 Aligned_cols=234 Identities=12% Similarity=0.107 Sum_probs=193.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
.-..+.+.++.+|+.|+.|+..|.+-.+|..+.+....+.. ...|.++.|-.+.+++|++ ....++|||-
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~- 198 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--------METVRDVTFLHNEQFFAVA-QKKYVYVYDN- 198 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh--------hhhhhhhhhhcchHHHHhh-hhceEEEecC-
Confidence 34678899999999999999999999999999886555433 3478999999988888886 4678999994
Q ss_pred CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (392)
Q Consensus 143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
.|..+..+. .+..|..+.|-|..-+|++++..|.++.-|+..|+.+..+....+ .+..++-+|-+.. +-.|..
T Consensus 199 ~GtElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaV-----ih~Ghs 271 (545)
T KOG1272|consen 199 NGTELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAV-----IHLGHS 271 (545)
T ss_pred CCcEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccce-----EEEcCC
Confidence 455554443 345789999999988999999999999999999999988876544 6888888887764 788999
Q ss_pred ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe
Q 016257 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (392)
Q Consensus 223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 302 (392)
.|+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|||++....+..+.. ..+...+++|..| +
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-l 347 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-L 347 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-c
Confidence 99999999999999999999999999999999999999999999999999999886666544 3477888898654 3
Q ss_pred EEEEeCCCeEEEEEee
Q 016257 303 VLTASKEWGAMITKLT 318 (392)
Q Consensus 303 l~~~~~dg~i~iw~~~ 318 (392)
||. +....+.||.=.
T Consensus 348 LA~-~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 348 LAL-SYGDHVQIWKDA 362 (545)
T ss_pred eee-ecCCeeeeehhh
Confidence 444 444589999543
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.8e-17 Score=147.78 Aligned_cols=258 Identities=13% Similarity=0.102 Sum_probs=182.9
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC--eEEE
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC 80 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~ 80 (392)
...+|+|+.|+|..+. +++.|.. +|.|.+|.+........ . ........|..+++.+.|..+.. -+++
T Consensus 241 ~~s~v~~~~f~p~~p~--ll~gG~y------~GqV~lWD~~~~~~~~~-s-~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPN--LLAGGCY------NGQVVLWDLRKGSDTPP-S-GLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred cCCceeEEEeccCCcc--eEEeecc------CceEEEEEccCCCCCCC-c-ccccccccCCcCeEEEEEeccCCCCceEE
Confidence 4578999999997765 5554444 56688998875443221 1 12223456899999999976444 4999
Q ss_pred EeCCCeEEEEEEeCCccceeecccc-----CCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce--------
Q 016257 81 STTNGGCKLFEVYGGATDINLLAKK-----MPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-------- 146 (392)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~-------- 146 (392)
++.||.|..|+++.-.......... .........+++++|.+ +...+++|+.+|.|.--+-...+.
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 9999999999876544322111111 11112345789999988 667899999999887733322111
Q ss_pred eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (392)
Q Consensus 147 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (392)
......|.++|+.+.++|-+..++..+.|.++++|... ...++..+..... .+++++|||....+ +++...+|.
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpav----F~~~d~~G~ 465 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAV----FATVDGDGN 465 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceE----EEEEcCCCc
Confidence 22445566799999999976655544449999999987 6666666655543 69999999998763 577888999
Q ss_pred EEEEeCCCc--eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257 226 LAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 226 i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 275 (392)
|.+||+... .++..........+.+.|+++|+.|++|...|++++|++..
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999753 34444444456777889999999999999999999999964
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.8e-17 Score=149.49 Aligned_cols=293 Identities=13% Similarity=0.162 Sum_probs=194.6
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC---CCCCeeEEEEcC--CCCeEEE
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNP--SGDDFVC 80 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp--~~~~l~~ 80 (392)
+-..+.|+|=.. .+++ .+ ....|.+|+++.... + ..|.. -...|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p--~i~~-ad------~r~~i~vwd~e~~~~-l-------~~F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAA-AD------DRERIRVWDWEKGRL-L-------NGFDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc--eeEE-cC------CcceEEEEecccCce-e-------ccccCCCCCCCccceeeeecccchhheee
Confidence 445566777432 3444 22 245689999974321 1 11211 134688888854 4458999
Q ss_pred EeCCCeEEEEEEeCCc-cceeeccccCC----CCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257 81 STTNGGCKLFEVYGGA-TDINLLAKKMP----PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (392)
Q Consensus 81 ~~~d~~i~iw~~~~~~-~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 155 (392)
++.||.|+||+-.... ...++...-.. .....+.-.-+.|.....+|++++.-..|+|||....+.+..+....+
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 9999999999864332 11121111000 000112225567887666777767688999999988777766655544
Q ss_pred -cEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee---eEEEecCCC-cceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 156 -SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 156 -~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
.++++.-+. .|+.+++|..||.|++||.+.... +.....|.. .+|..+.+.+.|-.. +++++.+|.|++|
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLL 1284 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc----eeeeccCCeEEEE
Confidence 677776544 468999999999999999886433 333333322 238888888866542 7999999999999
Q ss_pred eCCCceeeeee--ccc---CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----ccccCcceEEEEEeeCC
Q 016257 230 DISTWNKIGHK--RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 230 d~~~~~~~~~~--~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~i~~~~~s~~~ 300 (392)
|++.......+ ..| ++..+++..+++...+|+|+. +.|+||++...+.-.... .+...+.+.+++|+|-.
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 99974222111 111 235999999999999999998 899999987644322111 12225678999999999
Q ss_pred CeEEEEeCCCeEEEEEeecC
Q 016257 301 RVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~ 320 (392)
-++|+|+.|..|.||....+
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred HhhhhccCCceEEEeecCCc
Confidence 99999999999999987643
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.79 E-value=5.7e-17 Score=138.72 Aligned_cols=231 Identities=17% Similarity=0.249 Sum_probs=157.8
Q ss_pred eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEE-----cCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (392)
Q Consensus 37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (392)
+.+|.+.... -...++....+++ ...+|=+| .|.+--|+.|-..|.+++.|....+. .++.... ....
T Consensus 146 lyv~~~~g~~--~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~--r~i~ 218 (636)
T KOG2394|consen 146 LYVYSYRGAA--DLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEE--RLIN 218 (636)
T ss_pred EEEEEccCcc--hhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEecchhhHH-HHhhhhc--cccc
Confidence 5566665311 1123444444443 23444445 34566788888888899988766332 2211111 1123
Q ss_pred CCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE--EecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257 112 AGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM--DFSLDSEFLATTSTDGSARIWKTEDGVA 188 (392)
Q Consensus 112 ~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i--~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 188 (392)
...|+++.|-| +...++++..+|.+++||.+- . ...+.. ...+++..+.....-+. .+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~---~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------V---CGATAPSYQALKDGDQFAILTSKSK------KTRNP 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccc-------c---ccCCCCcccccCCCCeeEEeeeecc------ccCCc
Confidence 47899999999 445677778899999998621 0 111111 12334554443322111 12244
Q ss_pred eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 268 (392)
+..+..... .|...+|+|||++ +++.+.||.++|||..+.+.+..++..-+...|++|||||+||++|++|..|
T Consensus 283 v~~w~~~~g-~in~f~FS~DG~~-----LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 283 VARWHIGEG-SINEFAFSPDGKY-----LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred cceeEeccc-cccceeEcCCCce-----EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence 555544433 7999999999998 8999999999999999988887777777899999999999999999999999
Q ss_pred EEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
.||.+...+++..- ++| .+.|+.++|.|
T Consensus 357 tVwSf~erRVVARG-qGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TVWSFEERRVVARG-QGH-KSWVSVVAFDP 384 (636)
T ss_pred EEEEeccceEEEec-ccc-ccceeeEeecc
Confidence 99999999988765 689 99999999987
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.2e-18 Score=140.15 Aligned_cols=195 Identities=20% Similarity=0.204 Sum_probs=150.5
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (392)
Q Consensus 67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 146 (392)
.+++|+.+|..|++|+.||.++||+..+....... ..|.+.|.++.|+|||++|++-+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 46889999999999999999999998776543322 2478899999999999999999999 899999999966
Q ss_pred eecccCCC--CcEEEEEecCCC---Ce--EEEEcCCCcEEEEECCCCee-----eEEEecCCCcceEEEEecCCCCcceE
Q 016257 147 ILDEPKAH--KSVLDMDFSLDS---EF--LATTSTDGSARIWKTEDGVA-----WTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 147 ~~~~~~~~--~~i~~i~~~~~~---~~--l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
+....... .....+.|+.|+ .+ ++....-+.|+.||+...+. .++.... ...|.+++.+++|+.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf--- 295 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKF--- 295 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcE---
Confidence 65444222 257788898877 33 33333446677777643221 1111112 236999999999997
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeee-cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 275 (392)
++.++.+|.|.+++..+.+.++.. +.|..-|+.+.|+||.+++++.+.|....+..+.-
T Consensus 296 --~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 --LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred --EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 899999999999999988776544 56888999999999999999999998888887654
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-16 Score=147.71 Aligned_cols=268 Identities=12% Similarity=0.098 Sum_probs=179.9
Q ss_pred CCCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEE
Q 016257 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (392)
Q Consensus 1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~ 80 (392)
||....|..++-+++.. .++++|+. |++|++|+...-.... .......++.--...+.++...+.++.+|+
T Consensus 1045 ~Ehs~~v~k~a~s~~~~--s~FvsgS~------DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT--SLFVSGSD------DGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred hhccccccceeecCCCC--ceEEEecC------CceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 34455566666665443 36666665 7789999987533321 122333344434678999999999999999
Q ss_pred EeCCCeEEEEEEeCCccceee-ccccCCCCCCCCCeE-EEEecC-CCC-EEEEEeCCCcEEEEeCCCCceeec--ccCCC
Q 016257 81 STTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQK-CLSFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILD--EPKAH 154 (392)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~-~~~~s~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~ 154 (392)
++.||.|++.++...+..... .....+.....+.+. .-+|.. ++. .++.+..-+.|..||++....... ....+
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998763221111 111112222233333 334443 333 678888889999999987654433 33456
Q ss_pred CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC-CccEEEEEeCCC
Q 016257 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIST 233 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~v~d~~~ 233 (392)
+.|++++.+|.+.+++.|+..|.+.+||++=+.++..+..+...+++.+..+|-....-.. +.++. ..+.|.+|++.+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~-vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS-VSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE-EEecccCCCceeeeeccc
Confidence 7899999999999999999999999999999999999988777888888888765522111 34444 688999999998
Q ss_pred ceeeeeeccc-C----------------C--CcEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257 234 WNKIGHKRLL-R----------------K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (392)
Q Consensus 234 ~~~~~~~~~~-~----------------~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 278 (392)
+.....+... + . ......+...+..+.+|+.|..|+.||....+.
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 8654444322 0 0 111223333456889999999999999876543
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=130.07 Aligned_cols=244 Identities=16% Similarity=0.172 Sum_probs=172.1
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-CCCCCeeEEEEcCCCCeEEEEeC
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
+.|+|+.|-.++ . +..|. ..+.+.+|.+... .....++ .|...|+.+.--|+ ..|.+-++
T Consensus 15 ~~v~s~~fqa~~---r-L~sg~------~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 15 SSVTSVLFQANE---R-LMSGL------SVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred chheehhhccch---h-hhccc------ccceEEEEEeecC--------ccchhhhhhccceeeceeecCC-cchhhcCC
Confidence 445666665543 2 33333 3566899999733 2223345 46778999998887 56778889
Q ss_pred CCeEEEEEEeCCccc--------------eeecccc--------------------------------CCCCCCCCCeEE
Q 016257 84 NGGCKLFEVYGGATD--------------INLLAKK--------------------------------MPPLQDAGPQKC 117 (392)
Q Consensus 84 d~~i~iw~~~~~~~~--------------~~~~~~~--------------------------------~~~~~~~~~v~~ 117 (392)
|+.+.+|++...... ..+..+. .+.....+.+.+
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 999999998762210 0000000 000111244555
Q ss_pred EEecC-CCC--EEEEEeCCCcEEEEeCCCCceee----------cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC
Q 016257 118 LSFSV-DGS--RFAAGGVDGHLRIMHWPSLRIIL----------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (392)
Q Consensus 118 ~~~s~-~~~--~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 184 (392)
..+.. ++. ++++|.++|.+.+||+.++..+. ....|.++|.++.+.+.-..=++++.+..+..|.++
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 55433 333 46778889999999999874433 334566789999998866666788888899999886
Q ss_pred CCe--e-e-EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEE
Q 016257 185 DGV--A-W-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (392)
Q Consensus 185 ~~~--~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 260 (392)
... . + ......+. .+..+..-||++. +++++-|+.|+||..++.+++..++.|...|.+++|+|+...+|
T Consensus 236 ~s~gslq~~~e~~lknp-Gv~gvrIRpD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNP-GVSGVRIRPDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred cccCcccccceEEecCC-CccceEEccCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 431 1 1 11222222 5888999999996 89999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEec
Q 016257 261 MGSKDGDICVVDV 273 (392)
Q Consensus 261 ~~~~dg~i~iwd~ 273 (392)
.++.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=3e-17 Score=148.37 Aligned_cols=212 Identities=19% Similarity=0.134 Sum_probs=143.6
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDM 160 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i 160 (392)
+..|.+||...... ..+. .+...+...+|||||+.|+..+.+ ..|++||+++++... +....+....+
T Consensus 183 ~~~i~i~d~dg~~~-~~lt-------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVN-------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAP 253 (429)
T ss_pred eEEEEEECCCCCCc-eEec-------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCce
Confidence 46799999865542 1111 245678999999999999887654 369999998876422 11122234468
Q ss_pred EecCCCCeEEEEc-CCCcEEEE--ECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-e
Q 016257 161 DFSLDSEFLATTS-TDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K 236 (392)
Q Consensus 161 ~~~~~~~~l~~~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~ 236 (392)
+|+|||+.|+.++ .+|.+.|| |+.+++. ..+..+ ...+....|+|||+.+ ++++..++...+|+++... .
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~wSpDG~~i----~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSWSPDGQSI----LFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEECCCCCEE----EEEECCCCCceEEEEECCCCC
Confidence 9999999888764 67765555 6655543 444433 3357889999999973 3445566777777764321 1
Q ss_pred eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
...+ .+.. ....|+|||++|++.+.++ +.+||+.+++...... .. ....+.|+|||++|+.++.++.+.+|.
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 2222 2222 4578999999999887765 6679999887654321 11 335678999999999999999998887
Q ss_pred ee
Q 016257 317 LT 318 (392)
Q Consensus 317 ~~ 318 (392)
+.
T Consensus 400 ~~ 401 (429)
T PRK01742 400 LV 401 (429)
T ss_pred EE
Confidence 75
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2.1e-16 Score=145.43 Aligned_cols=248 Identities=17% Similarity=0.142 Sum_probs=181.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEe
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d 140 (392)
..+...+.|+|-...++++.....|+|||.+.++....+.... .....|+.+.+-. |..++++|+.||.|+||+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----FPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC----CCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3457789999999999998877789999999887655544332 1346788998866 556899999999999996
Q ss_pred CC-CC----ceeeccc-------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257 141 WP-SL----RIILDEP-------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (392)
Q Consensus 141 ~~-~~----~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (392)
-- +. +.+.... ...+.=.-++|.....+|++++.-..|+|||.........+.......++++.-+-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 42 21 1221111 111111346787766677777777899999999888888887766666777765544
Q ss_pred C-CcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCCC--cEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeee
Q 016257 209 G-TKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKP--ASVLSISLDGK-YLAMGSKDGDICVVDVKKMEINHW 281 (392)
Q Consensus 209 ~-~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~--v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 281 (392)
. .. +++|-.||.|++||.+.... +...+.|... |..+.+.+.|- .|++|+.||.|++||++.......
T Consensus 1220 ~gn~-----i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1220 HGNI-----IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred CCce-----EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 3 43 78899999999999986543 4555666665 88999988774 599999999999999998432222
Q ss_pred ee-cccc--CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 282 SK-RLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 282 ~~-~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
+. ..|. ++..+++..++....+|+|+. +.|+||++...
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 11 2221 235999999999999999998 89999999743
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=7.9e-15 Score=120.23 Aligned_cols=279 Identities=15% Similarity=0.157 Sum_probs=193.6
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN- 84 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d- 84 (392)
.+..+.|+.+. .++..|+..| .++|..++-..-. ........|.-+-|+.+ ++|..+.+
T Consensus 7 ti~~~~~Nqd~---~~lsvGs~~G-------yk~~~~~~~~k~~--------~~~~~~~~IvEmLFSSS--LvaiV~~~q 66 (391)
T KOG2110|consen 7 TINFIGFNQDS---TLLSVGSKDG-------YKIFSCSPFEKCF--------SKDTEGVSIVEMLFSSS--LVAIVSIKQ 66 (391)
T ss_pred ceeeeeeccce---eEEEccCCCc-------eeEEecCchHHhh--------cccCCCeEEEEeecccc--eeEEEecCC
Confidence 46667788776 6788666644 6688877543211 01111335666777654 56655544
Q ss_pred -CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC---CCcEEEE
Q 016257 85 -GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLDM 160 (392)
Q Consensus 85 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~i 160 (392)
..+++.+.+....+-... -..+|.++.++.+ .|++.-.+ .|+|||+++.+.+.++..- ...+.++
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIF--------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred CceEEEEEcccCceEEEEe--------cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence 348888887765443332 2357899999754 56665544 4999999999887666543 2356677
Q ss_pred EecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE-EEEEeCCCceee
Q 016257 161 DFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKI 237 (392)
Q Consensus 161 ~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~v~d~~~~~~~ 237 (392)
.+++.+.+++.-+ ..|.|.+||+.+-++...+..| ++.+.+++|+++|.. ++++++.|+ |+|+.+.+++.+
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccEe
Confidence 7777777888533 4589999999999999988865 558999999999997 899998876 789999999998
Q ss_pred eeecccC--CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee---------------------------------
Q 016257 238 GHKRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--------------------------------- 282 (392)
Q Consensus 238 ~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------------------- 282 (392)
.+++... ..|.+++|+|++.+|++.+..++|++|.++.-.....-
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~ 289 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRK 289 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccc
Confidence 8876533 46789999999999999999999999988642210000
Q ss_pred ---eccccCcce-EEEEEe--eCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 283 ---KRLHLGTSI-ALVEFC--PTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 283 ---~~~~~~~~i-~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
.+.. .+.. ..+.+. +....+..++.||.++.|.++....
T Consensus 290 FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~g 334 (391)
T KOG2110|consen 290 FATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEG 334 (391)
T ss_pred eeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCC
Confidence 0000 1111 223344 3667899999999999999986533
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-17 Score=143.65 Aligned_cols=218 Identities=10% Similarity=0.062 Sum_probs=160.0
Q ss_pred ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEe
Q 016257 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG 131 (392)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~ 131 (392)
.....|.||++.|+|++|+.+|.+|++|+.|-.+.|||....+....+.. .|...|.++.|-| +.+.+++|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T------gHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST------GHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec------ccccceeEEeeeccCCCeEEEecc
Confidence 34567899999999999999999999999999999999986665444433 4788999999999 556889999
Q ss_pred CCCcEEEEeCCCC----------ceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeE-------EEe
Q 016257 132 VDGHLRIMHWPSL----------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWT-------FLT 193 (392)
Q Consensus 132 ~dg~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~-------~~~ 193 (392)
.|..|+++|+... +.......|...|..++-.|++ ..+.++++||+|+-+|++....-. .+.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 9999999999742 1223334566688889999988 789999999999999998642211 010
Q ss_pred c--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce------------------eeeeec-cc--------C
Q 016257 194 R--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------------KIGHKR-LL--------R 244 (392)
Q Consensus 194 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------------------~~~~~~-~~--------~ 244 (392)
. ..--...++..+|...+ +++.|+.+-..++||.+... ++..+. .| .
T Consensus 195 ny~~~lielk~ltisp~rp~----~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPY----YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HhchhhheeeeeeecCCCCc----eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 0 01124678999998886 27899999999999954211 111110 01 1
Q ss_pred C---CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257 245 K---PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (392)
Q Consensus 245 ~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 281 (392)
. .++-++|+|+|.-|++.-....|+++|+..++.+..
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1 245678999998777666566799999988765443
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=7.7e-16 Score=138.86 Aligned_cols=222 Identities=19% Similarity=0.172 Sum_probs=146.5
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCC
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG 134 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 134 (392)
+..+...+...+|+|||+.|+..+. +..+.+|++.+++... +.. ..+.+..+.|+|||+.|+.. +.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-------~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-------FPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-------CCCCcCCeEECCCCCEEEEEEcCCC
Confidence 3445678999999999999887542 3568899987764221 111 12334568999999988865 3444
Q ss_pred --cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-Cc--EEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (392)
Q Consensus 135 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (392)
.|++||+++++.. .+..+...+....|+|||+.|+..+.+ +. |+++|+.+++. ..+... ........|+|||
T Consensus 266 ~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG 342 (429)
T PRK03629 266 SLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG 342 (429)
T ss_pred CcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC
Confidence 5889999887654 344444567889999999988776653 44 55556666544 333322 2245678999999
Q ss_pred CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc---EEEEecCCceeeeeeeccc
Q 016257 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~ 286 (392)
+.+++ .........|.+||+.+++.. .+.. ........|+|||+.|+..+.++. +.++++..... ..+ ..|
T Consensus 343 ~~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l-~~~ 416 (429)
T PRK03629 343 KFMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARL-PAT 416 (429)
T ss_pred CEEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EEC-ccC
Confidence 97321 111122356899999887643 2322 223456789999999999887764 67777754443 333 345
Q ss_pred cCcceEEEEEee
Q 016257 287 LGTSIALVEFCP 298 (392)
Q Consensus 287 ~~~~i~~~~~s~ 298 (392)
.+.+...+|+|
T Consensus 417 -~~~~~~p~Wsp 427 (429)
T PRK03629 417 -DGQVKFPAWSP 427 (429)
T ss_pred -CCCcCCcccCC
Confidence 67788899987
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.6e-17 Score=139.13 Aligned_cols=296 Identities=14% Similarity=0.080 Sum_probs=209.7
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeC
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV 132 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~ 132 (392)
+...|..|.+.|..+.|+..|..|++|+.|..|.+||.........+.. .|...|....|-| +...+++.+.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------GH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------GHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------ccccchhhhhccCCCCCcCceeccc
Confidence 3346889999999999999999999999999999999988876555543 3566677777877 4457899999
Q ss_pred CCcEEEEeCCCCce---eecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEec--CCC---cceEEE
Q 016257 133 DGHLRIMHWPSLRI---ILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR--NSD---EKIELC 203 (392)
Q Consensus 133 dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~---~~v~~~ 203 (392)
||.+++=.+..... ...+..|+++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+.. ... -....+
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 99999887643322 33456678899999999965 4589999999999999998765544432 112 146788
Q ss_pred EecCCCCcceEEEEEEeCCccEEEEEeCCCceee------eeec------ccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------GHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (392)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 271 (392)
+..|...+. +++++.|..+++||.+..... ..+. ...-.|++++++.++.-|.+.-.|-.|+++
T Consensus 288 a~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 288 AVDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred ecCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 888887753 689999999999998753221 1111 224579999999887766666778889999
Q ss_pred ecCC--c----------eeeeeeecccc-CcceEEEEE-eeCCCeEEEEeCCCeEEEEEeecCcccccee-eeeeeeeee
Q 016257 272 DVKK--M----------EINHWSKRLHL-GTSIALVEF-CPTQRVVLTASKEWGAMITKLTVPADWKEWQ-IYSLLLALF 336 (392)
Q Consensus 272 d~~~--~----------~~~~~~~~~~~-~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~ 336 (392)
.-.- + ......+++|. ...|..+-| -|...++++|+.=|.|.||+-+..+-..... .....+++.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence 5332 2 22223245662 234777764 6788899999999999999987664433221 111233332
Q ss_pred e--eceEEEEeeecceeeeecccccc
Q 016257 337 L--ASAVVFYIFFENSDSFWNFPVAR 360 (392)
Q Consensus 337 ~--~~~~~~~~~~d~~i~~W~~~~~~ 360 (392)
. --.++++.+.|..|+||.-.+.+
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred CCCCCchhhccCCccceeeecCCccc
Confidence 1 22366777889999999874433
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=7.2e-16 Score=143.97 Aligned_cols=270 Identities=11% Similarity=0.069 Sum_probs=184.7
Q ss_pred ccccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCE
Q 016257 48 SVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR 126 (392)
Q Consensus 48 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 126 (392)
.....+.+...+..|...+..++.++.. .++++|+.||+|++|++..-...................+.++...+.++.
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 3334566777888999999999988754 899999999999999997644321111111111113578899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCc-------eeecccCC-CCcEEE-EEecC-CCC-eEEEEcCCCcEEEEECCCCeeeEEEecC
Q 016257 127 FAAGGVDGHLRIMHWPSLR-------IILDEPKA-HKSVLD-MDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTRN 195 (392)
Q Consensus 127 l~~~~~dg~i~i~d~~~~~-------~~~~~~~~-~~~i~~-i~~~~-~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 195 (392)
+|+++.||.|++.+++... +......+ .+.+.+ -+|.. .+. .++.+...+.|..||++......+++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999986521 11111111 123333 34433 233 6778888899999999987665554422
Q ss_pred -CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCC---CCEEEEEe--CCCcE
Q 016257 196 -SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLD---GKYLAMGS--KDGDI 268 (392)
Q Consensus 196 -~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~--~dg~i 268 (392)
..+.|++++.+|.+.+ ++.|...|.+.+||+|-+.++.... .+..+++.+..+|- ....++++ ..+.|
T Consensus 1193 ~~hG~vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred ccccceeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 2347999999999998 8999999999999999888776554 34467777777763 34554444 46789
Q ss_pred EEEecCCceeeeeeeccc-----------------cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 269 CVVDVKKMEINHWSKRLH-----------------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~-----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
.+|++.++.....+.... ..-......+..-+..+.+|+.|..|+.||...+..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 999999986554442220 011122233334456899999999999999886644
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=6.8e-18 Score=141.80 Aligned_cols=232 Identities=15% Similarity=0.211 Sum_probs=189.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 193 (392)
....+.++.+|.+|+.|+..|.+..+|+.+++....+ .-...|.++.|-.+.+++|++- ...++|||- .|..++.+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh
Confidence 4578999999999999999999999999998876544 3345789999988888887775 478999995 677777776
Q ss_pred cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (392)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 273 (392)
.+. .|..+.|-|..-. +++++..|.+.--|+.+|+.+..+....+.+..+.-.|-+..+-+|..+|+|.+|..
T Consensus 208 ~~~--~v~rLeFLPyHfL-----L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 208 RHI--RVARLEFLPYHFL-----LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred hcC--chhhhcccchhhe-----eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 543 5899999987543 799999999999999999999999888889999999999999999999999999999
Q ss_pred CCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeee
Q 016257 274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSF 353 (392)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 353 (392)
...+++..+ ..| .++|.++++.++|++++|++.|..++|||++.-..+......+......+....++..+.-..+.+
T Consensus 281 ~skePLvKi-LcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKI-LCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQI 358 (545)
T ss_pred CCcchHHHH-Hhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeee
Confidence 988887776 578 999999999999999999999999999999865544333332333333444445566666777999
Q ss_pred eccc
Q 016257 354 WNFP 357 (392)
Q Consensus 354 W~~~ 357 (392)
|.-.
T Consensus 359 w~d~ 362 (545)
T KOG1272|consen 359 WKDA 362 (545)
T ss_pred ehhh
Confidence 9643
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=6.8e-16 Score=127.28 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=170.0
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-EEEEEeCC--CcEEE
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVD--GHLRI 138 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~i 138 (392)
..++|..++.. | ..|++|-.+|.+.+|..+.+...... ...+.....+..+.-++... .+++|+.. ..+.+
T Consensus 104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~----l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSK----LIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccchhhc-C-CEEEEEecCCcEEEEeccCCcccccc----ceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence 35566666654 3 37788889999999999865422111 11111234666777777444 55668888 78999
Q ss_pred EeCCCCceeecccCCCC---------cEEEEEecCC--CCeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEec
Q 016257 139 MHWPSLRIILDEPKAHK---------SVLDMDFSLD--SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFS 206 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~---------~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~ 206 (392)
||+++.+++..-..... .++++.|-+. ...|++++.-+.+++||.+.+ +++..+... ..+++++...
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~ 256 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLT 256 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeec
Confidence 99998876655443321 3678889886 788999999999999999865 466666544 4489999999
Q ss_pred CCCCcceEEEEEEeCCccEEEEEeCCCceeeee-ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 285 (392)
|+++. ++++..-+.+..||++.++.... +.+..+.++++..+|.+.++++++-|..|||+|+++.+++...+.
T Consensus 257 p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv- 330 (412)
T KOG3881|consen 257 PSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV- 330 (412)
T ss_pred CCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence 99997 78899999999999999998876 788889999999999999999999999999999999777665433
Q ss_pred ccCcceEEEEEeeC
Q 016257 286 HLGTSIALVEFCPT 299 (392)
Q Consensus 286 ~~~~~i~~~~~s~~ 299 (392)
.+.++++-+.++
T Consensus 331 --Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 --KSRLTFILLRDD 342 (412)
T ss_pred --hccccEEEecCC
Confidence 567777777654
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=5.8e-16 Score=124.98 Aligned_cols=271 Identities=14% Similarity=0.161 Sum_probs=178.7
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe-EEEEeCCC
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTTNG 85 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~~~~~d~ 85 (392)
|.-+.|.-|...+..+ ...++.+++|++. .+.....++.-+..+.++.|||||+. |.+...+-
T Consensus 51 i~yieW~ads~~ilC~--------~yk~~~vqvwsl~--------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCV--------AYKDPKVQVWSLV--------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred hhheeeeccceeeeee--------eeccceEEEEEee--------cceeEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence 4446677666442212 2246678899887 55566667777889999999999975 45667788
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc---EEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH---LRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
+|.+|.+.+.+...... ....+..++|+|||++.+..+.... +.|..-+....+..+....-..+.+.|
T Consensus 115 riTVWSL~t~~~~~~~~--------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 115 RITVWSLNTQKGYLLPH--------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred EEEEEEeccceeEEecc--------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 99999998876432221 1345689999999999888765321 222111122222233333345788999
Q ss_pred cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee------
Q 016257 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------ 236 (392)
Q Consensus 163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------ 236 (392)
+|||..|++ ||.--.-.+.... .+-.+..++|+|.++. ++.|+.|+.+++.+--+.+.
T Consensus 187 sPdg~~laV---------wd~~Leykv~aYe--~~lG~k~v~wsP~~qf-----lavGsyD~~lrvlnh~tWk~f~eflh 250 (447)
T KOG4497|consen 187 SPDGNWLAV---------WDNVLEYKVYAYE--RGLGLKFVEWSPCNQF-----LAVGSYDQMLRVLNHFTWKPFGEFLH 250 (447)
T ss_pred CCCCcEEEE---------ecchhhheeeeee--eccceeEEEeccccce-----EEeeccchhhhhhceeeeeehhhhcc
Confidence 999987765 4322111111122 1224788899998886 78888898887755322110
Q ss_pred ------------------------------------------------------eeeec------ccCCCcEEEEECCCC
Q 016257 237 ------------------------------------------------------IGHKR------LLRKPASVLSISLDG 256 (392)
Q Consensus 237 ------------------------------------------------------~~~~~------~~~~~v~~~~~s~~~ 256 (392)
+..++ .....+.-++|++|.
T Consensus 251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 00011 112345678999999
Q ss_pred CEEEEEeCC--CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 257 KYLAMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 257 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
.++++-... +.+.+||++..++...+.+ ..+|....|+|....|+.+.....+++|....+
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 999987643 6799999999887766654 459999999999988888887888999987754
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.1e-15 Score=135.78 Aligned_cols=236 Identities=12% Similarity=0.081 Sum_probs=154.7
Q ss_pred eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (392)
Q Consensus 37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 113 (392)
-+||.++.++... ..+..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+. .+.+
T Consensus 182 ~~l~~~d~dg~~~-------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-------~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANV-------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-------NFPG 246 (435)
T ss_pred eEEEEECCCCCCc-------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-------cCCC
Confidence 4566666544322 235567889999999999999888753 467999999876532 111 1234
Q ss_pred CeEEEEecCCCCEEE-EEeCCCc--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCCe
Q 016257 114 PQKCLSFSVDGSRFA-AGGVDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGV 187 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~ 187 (392)
.+...+|+|||+.|+ +.+.++. |++||+++++.. .+..+........|+|||+.|+..+. +| .|+++|+..++
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 667889999999876 4455554 777788877653 34444445677899999998887663 33 58888887655
Q ss_pred eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC--
Q 016257 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-- 265 (392)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 265 (392)
.. .+... ...+....|+|+|+.+++ ......+..|.+||+..+... .+. ....+..+.|+|||+.|+..+.+
T Consensus 326 ~~-~lt~~-~~~~~~~~~SpdG~~ia~--~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 326 PR-RISFG-GGRYSTPVWSPRGDLIAF--TKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred eE-EeecC-CCcccCeEECCCCCEEEE--EEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCC
Confidence 43 33322 234667899999997321 111223357899998655432 222 23356788999999998776543
Q ss_pred ----CcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 266 ----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 266 ----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
..+.++|+..++... +. . .+.+...+|+|
T Consensus 400 ~~~~~~L~~~dl~g~~~~~-l~--~-~~~~~~p~Wsp 432 (435)
T PRK05137 400 SGGAPKLYTVDLTGRNERE-VP--T-PGDASDPAWSP 432 (435)
T ss_pred CCCcceEEEEECCCCceEE-cc--C-CCCccCcccCC
Confidence 257888887765533 22 1 34567778876
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.73 E-value=2.2e-13 Score=119.58 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=181.2
Q ss_pred CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC----CCeEEEEEEeCCccceeeccccCCC
Q 016257 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPP 108 (392)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (392)
..+.|.+|.+|.....+.. . ..+. -......++++|++++|++... ++.|..|++..............
T Consensus 11 ~~~gI~~~~~d~~~g~l~~--~--~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-- 83 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTL--V--QTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-- 83 (345)
T ss_dssp SSTEEEEEEEETTTTEEEE--E--EEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--
T ss_pred CCCcEEEEEEcCCCCCceE--e--eeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--
Confidence 3567999999877655532 1 1121 2456788999999999998876 56899999987621111111110
Q ss_pred CCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCC-ceeec--cc-----------CCCCcEEEEEecCCCCeEEEEc
Q 016257 109 LQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSL-RIILD--EP-----------KAHKSVLDMDFSLDSEFLATTS 173 (392)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~--~~-----------~~~~~i~~i~~~~~~~~l~~~~ 173 (392)
........++++|++++|+++.. +|.+.++++... ..... .. .......++.++|+++++++..
T Consensus 84 -~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 84 -SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp -ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred -cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 02345678999999999998874 899999999763 32211 11 1123578999999999888764
Q ss_pred C-CCcEEEEECCCCe--e--eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC--Cce--eeeeeccc-
Q 016257 174 T-DGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWN--KIGHKRLL- 243 (392)
Q Consensus 174 ~-d~~i~vwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~~--~~~~~~~~- 243 (392)
. ...|.+|++.... . ...+........+.++|+|+++++ .+....++.|.++++. .++ .+......
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~----Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA----YVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE----EEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 3 3579999997654 2 233444555568999999999974 3566778999999988 332 22222211
Q ss_pred -----CCCcEEEEECCCCCEEEEEe-CCCcEEEEecC--Ccee--eeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeE
Q 016257 244 -----RKPASVLSISLDGKYLAMGS-KDGDICVVDVK--KMEI--NHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGA 312 (392)
Q Consensus 244 -----~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i 312 (392)
......++++|||++|+++. ..+.|.+|++. ++++ +..+.. . ......++++|+|++|+++. .++.|
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~-G~~Pr~~~~s~~g~~l~Va~~~s~~v 316 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-G-GKFPRHFAFSPDGRYLYVANQDSNTV 316 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-S-SSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-C-CCCccEEEEeCCCCEEEEEecCCCeE
Confidence 12577899999999998876 45679999993 2333 222221 1 44589999999999988877 56899
Q ss_pred EEEEeecC
Q 016257 313 MITKLTVP 320 (392)
Q Consensus 313 ~iw~~~~~ 320 (392)
.+|+++..
T Consensus 317 ~vf~~d~~ 324 (345)
T PF10282_consen 317 SVFDIDPD 324 (345)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 99999743
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-15 Score=123.68 Aligned_cols=232 Identities=17% Similarity=0.180 Sum_probs=159.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~ 141 (392)
+..+..++|++.-..+|++..|..|++|+-.. .....+.. .....|++++|-|. ++.|++|+..| |.+|..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 34678899999777888999999999999766 32222221 12468999999994 55677777554 899976
Q ss_pred CCC----ce-------eeccc--CCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257 142 PSL----RI-------ILDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 142 ~~~----~~-------~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (392)
... .. ..++. ..+..|+++.|.+||..+++++- |..|.|||..++..+....... +.+.-+.|+|
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSP 248 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSP 248 (445)
T ss_pred CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-CceeeEEEcC
Confidence 421 11 01111 22358999999999999999884 5789999999887765543333 3588999999
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---------
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--------- 277 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------- 277 (392)
|+.. ++.+.-|+..++|... +.... ......+.|....|+|+|++|...+. |.-++|.+.-..
T Consensus 249 dgd~-----lfaAt~davfrlw~e~q~wt~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 249 DGDV-----LFAATCDAVFRLWQENQSWTKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred CCCE-----EEEecccceeeeehhcccceec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 9998 7888899999999554 33333 23333558999999999998776553 334455442110
Q ss_pred ---eeeee--------ecc--ccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 278 ---INHWS--------KRL--HLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 278 ---~~~~~--------~~~--~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
....+ ..+ -..+++.+++|.|.|.+|++.-..+
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 00000 000 0156889999999999999876653
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.9e-15 Score=129.46 Aligned_cols=289 Identities=11% Similarity=0.074 Sum_probs=206.3
Q ss_pred CCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC--CCeeEEEEcCCCCeEE
Q 016257 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE--GDPMTIAVNPSGDDFV 79 (392)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~ 79 (392)
|....-+.+.-+||+++ ++++|.. ...|++|.+. .. ...|.-|. ..|.-.-.+.|-..++
T Consensus 49 e~p~ast~ik~s~DGqY--~lAtG~Y------KP~ikvydla--------nL--SLKFERhlDae~V~feiLsDD~SK~v 110 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY--LLATGTY------KPQIKVYDLA--------NL--SLKFERHLDAEVVDFEILSDDYSKSV 110 (703)
T ss_pred CCccccceeEecCCCcE--EEEeccc------CCceEEEEcc--------cc--eeeeeecccccceeEEEeccchhhhe
Confidence 44556678889999987 6777766 4458888876 22 22344443 3344444455555555
Q ss_pred EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEE
Q 016257 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (392)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 159 (392)
.-..|.+|.+........... -...-..++++.-..-|++++....|+-++++.|+-+..+....+.+++
T Consensus 111 ~L~~DR~IefHak~G~hy~~R----------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~ 180 (703)
T KOG2321|consen 111 FLQNDRTIEFHAKYGRHYRTR----------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNV 180 (703)
T ss_pred EeecCceeeehhhcCeeeeee----------cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccccee
Confidence 556777776654322111111 1123356677654434555555667899999999887766666678999
Q ss_pred EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC----------cceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 160 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
+..++-..+|++|+.+|.|..||.+....+.++..... ..|+++.|+.+|-. ++.|...|.+.+|
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-----~aVGts~G~v~iy 255 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-----VAVGTSTGSVLIY 255 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-----EEeeccCCcEEEE
Confidence 99999999999999999999999998777666643221 24899999999887 8999999999999
Q ss_pred eCCCceeeeee-cccCCCcEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257 230 DISTWNKIGHK-RLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306 (392)
Q Consensus 230 d~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 306 (392)
|+++.+++... .....+|..+.|.+. ++.+++. ....++|||-.+|+....+.. ...+..+++-|++.+++++
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred EcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEe
Confidence 99998876332 223457888999775 3455554 356799999999998887644 4579999999999999999
Q ss_pred eCCCeEEEEEeecCcccccee
Q 016257 307 SKEWGAMITKLTVPADWKEWQ 327 (392)
Q Consensus 307 ~~dg~i~iw~~~~~~~~~~~~ 327 (392)
..++.+..|-+....+.+.|.
T Consensus 332 ne~~~m~~yyiP~LGPaPrWC 352 (703)
T KOG2321|consen 332 NESSKMHTYYIPSLGPAPRWC 352 (703)
T ss_pred cCCCcceeEEccccCCCchhh
Confidence 999999999888776666663
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.2e-15 Score=134.99 Aligned_cols=236 Identities=17% Similarity=0.154 Sum_probs=148.3
Q ss_pred eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (392)
Q Consensus 37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 113 (392)
.++|.++.++... ..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +.. ..+
T Consensus 176 ~~L~~~D~dG~~~-------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~-------~~g 240 (427)
T PRK02889 176 YQLQISDADGQNA-------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN-------FKG 240 (427)
T ss_pred cEEEEECCCCCCc-------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec-------CCC
Confidence 4577776544322 2244567889999999999999877643 359999998775321 111 123
Q ss_pred CeEEEEecCCCCEEEE-EeCCCcEEEEe--CCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEEC--CCCe
Q 016257 114 PQKCLSFSVDGSRFAA-GGVDGHLRIMH--WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGV 187 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~--~~~~ 187 (392)
.+...+|+|||+.|+. .+.++...+|. +.++. ...+..+........|+|||+.|+..+. ++...+|.+ ..++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 4568999999998874 56677766665 44443 3344444445567889999998876553 456666654 4443
Q ss_pred eeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC
Q 016257 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (392)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 265 (392)
.. .+... .......+|+|+|+.++ +++. ....|.+||+.+++.... .. ......+.|+|||+.|+..+.+
T Consensus 320 ~~-~lt~~-g~~~~~~~~SpDG~~Ia----~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 320 AQ-RVTFT-GSYNTSPRISPDGKLLA----YISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred eE-EEecC-CCCcCceEECCCCCEEE----EEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEEEec
Confidence 32 22222 12345678999999732 2222 234799999988765432 22 2334678999999998887754
Q ss_pred C---cEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257 266 G---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 266 g---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
+ .+.+.++. ++....+ ..+ .+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~~-g~~~~~l-~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSSD-GRIKQRL-SVQ-GGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEECC-CCceEEe-ecC-CCCCCCCccCCC
Confidence 3 35566664 4444333 234 567788888873
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=7.4e-17 Score=130.04 Aligned_cols=220 Identities=12% Similarity=0.130 Sum_probs=156.2
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCce
Q 016257 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI 146 (392)
Q Consensus 68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~ 146 (392)
-..|||+|+++|+.++. ++.|-|.++-+....+.. -..|..+.|..|..++++ ...++.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 36799999999998776 688888887764333322 135677899988877655 46788999999998888
Q ss_pred eecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC-c-
Q 016257 147 ILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-K- 223 (392)
Q Consensus 147 ~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d- 223 (392)
..++.....++.++.|||||+.| .+..-+-.|.+|.+.+.+....- +....+..++|+|||++ .+..+. |
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f-----~ai~sRrDC 156 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQF-----CAILSRRDC 156 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCce-----eeeeecccH
Confidence 77788888899999999999665 45667889999999877664432 23335789999999996 233322 2
Q ss_pred -cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe
Q 016257 224 -ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (392)
Q Consensus 224 -~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 302 (392)
..+.+..-.....++.+....-..+.+.|+|||..||+ ||---.-.+... |.+-.+..++|+|.+++
T Consensus 157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY---e~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY---ERGLGLKFVEWSPCNQF 224 (447)
T ss_pred HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee---eeccceeEEEeccccce
Confidence 12222222333445556666667889999999988775 432211111111 11457889999999999
Q ss_pred EEEEeCCCeEEEE
Q 016257 303 VLTASKEWGAMIT 315 (392)
Q Consensus 303 l~~~~~dg~i~iw 315 (392)
|+.|+.|+.+|+.
T Consensus 225 lavGsyD~~lrvl 237 (447)
T KOG4497|consen 225 LAVGSYDQMLRVL 237 (447)
T ss_pred EEeeccchhhhhh
Confidence 9999999999874
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.9e-15 Score=134.95 Aligned_cols=220 Identities=18% Similarity=0.166 Sum_probs=144.9
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCC
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG 134 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg 134 (392)
+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +. ...+...+.+|+|||+.|+. .+.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~-------~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VA-------SFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ec-------cCCCCccCceECCCCCEEEEEEeCCC
Confidence 45567789999999999999987643 469999997765321 11 11234457899999998764 45555
Q ss_pred --cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (392)
Q Consensus 135 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (392)
.|++||+.+++.. .+..+.......+|+|||+.|+.++ .++. |+++|+.+++... +... ......++|+|+|
T Consensus 271 ~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~SpDG 347 (433)
T PRK04922 271 NPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSPDG 347 (433)
T ss_pred CceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECCCC
Confidence 5999999887654 3444444456789999999888766 3444 6677776665433 2222 2234578999999
Q ss_pred CcceEEEEEEeCC--ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeec
Q 016257 210 TKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKR 284 (392)
Q Consensus 210 ~~~~~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 284 (392)
+.++ ++... ...|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.++++..... ..+ .
T Consensus 348 ~~Ia----~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l-~ 419 (433)
T PRK04922 348 KKIA----MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRL-V 419 (433)
T ss_pred CEEE----EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEc-c
Confidence 9732 22222 347999999887654 332 22244567999999998877653 3578888865443 333 2
Q ss_pred cccCcceEEEEEee
Q 016257 285 LHLGTSIALVEFCP 298 (392)
Q Consensus 285 ~~~~~~i~~~~~s~ 298 (392)
.+ .+.+..++|+|
T Consensus 420 ~~-~g~~~~p~wsp 432 (433)
T PRK04922 420 SA-DGEVREPAWSP 432 (433)
T ss_pred cC-CCCCCCCccCC
Confidence 33 45677788876
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.72 E-value=1.4e-15 Score=121.06 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=110.1
Q ss_pred EEEEecCCCCeEEEEcC----------CCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257 158 LDMDFSLDSEFLATTST----------DGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (392)
Q Consensus 158 ~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (392)
..+.|+|+|++|+.-.. -+...+|.++. +.....+.....++|..++|+|++..+. ++.+..+..|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~fa---vi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFA---VIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEE---EEEccCCccc
Confidence 35789999987765332 13455666532 3445555544455799999999998722 4556667899
Q ss_pred EEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (392)
Q Consensus 227 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 303 (392)
.+||++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||.++.+.+.... ...++.++|+|||++|
T Consensus 86 ~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSPDGRYL 158 (194)
T ss_pred EEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcCCCCEE
Confidence 999997 45554443 5677899999999999998743 669999999888876642 3457899999999999
Q ss_pred EEEeC------CCeEEEEEee
Q 016257 304 LTASK------EWGAMITKLT 318 (392)
Q Consensus 304 ~~~~~------dg~i~iw~~~ 318 (392)
+++.. |+.++||++.
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEeccceeccccEEEEEec
Confidence 98875 5666777665
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.7e-14 Score=130.11 Aligned_cols=206 Identities=15% Similarity=0.081 Sum_probs=138.1
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.|.++|....... .+. .+...+...+|||||+.|+..+. +..+++|++.+++... +....+.+....|
T Consensus 180 ~l~~~d~dg~~~~-~lt-------~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCCE-Eee-------cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence 5888887655421 111 13457899999999999887542 3579999998876432 2223334557899
Q ss_pred cCCCCeEEEE-cCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCCceee
Q 016257 163 SLDSEFLATT-STDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKI 237 (392)
Q Consensus 163 ~~~~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~~ 237 (392)
+|||+.|+.. +.++ .|++||+++++... +... ...+....|+||++.+ ++++..++ .|.++|+.+++..
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~-~~~~~~~~wSPDG~~I----~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDG-RSNNTEPTWFPDSQNL----AYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCC-CCCcCceEECCCCCEE----EEEeCCCCCceEEEEECCCCCeE
Confidence 9999988765 4444 58899998776543 3322 2357789999999972 23333333 5666677765443
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 311 (392)
.+...........|+|||++|+..+.+ ..|.+||+.+++..... . ........|+|||++|+.++.++.
T Consensus 325 -~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~---~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 325 -RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-D---TFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred -EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-C---CCCCCCceECCCCCEEEEEEcCCC
Confidence 333334455678999999999876643 35888999888754432 2 223456789999999999988865
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.7e-15 Score=122.36 Aligned_cols=250 Identities=15% Similarity=0.157 Sum_probs=181.1
Q ss_pred CCCeeEEEEcCCCC--eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257 63 EGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 63 ~~~v~~~~~sp~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 140 (392)
...|..++|.-+++ .+...+.+..+..+................ ..-..++|..++.. |+ .|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~-~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKT-VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccc-cccccccccchhhc-CC-EEEEEecCCcEEEEe
Confidence 45788888876554 444444666677777766554333211000 01124566666654 34 677778899999999
Q ss_pred CCCCce---eecccCCCCcEEEEEecCCCC-eEEEEcCC--CcEEEEECCCCeeeEEEecCC--------CcceEEEEec
Q 016257 141 WPSLRI---ILDEPKAHKSVLDMDFSLDSE-FLATTSTD--GSARIWKTEDGVAWTFLTRNS--------DEKIELCRFS 206 (392)
Q Consensus 141 ~~~~~~---~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~ 206 (392)
.+.+.. .........++..+.-++... .+++|+.. ..+.+||++..+.+.+-.... .-+++.+.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 884431 111222334677777777554 45568887 789999999875554433221 1246778888
Q ss_pred CC--CCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257 207 KD--GTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (392)
Q Consensus 207 ~~--~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 283 (392)
+. ... ++++..-+.+++||.+.+ +++..+.....+++++...|+++++++|..-|.+..||+++++......
T Consensus 212 ~g~~~~~-----fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 212 EGSPNYK-----FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred CCCCCce-----EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 77 444 799999999999999965 4567777778999999999999999999999999999999999888755
Q ss_pred ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257 284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 284 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
.+- .+.|+++..+|.+++++++|-|..+||+|+.+..
T Consensus 287 kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 287 KGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred CCc-cCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 666 8999999999999999999999999999998743
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-14 Score=128.22 Aligned_cols=292 Identities=15% Similarity=0.150 Sum_probs=204.1
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCC-------ceEEEeeCCCCCeeEEEEcCCC
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNPSG 75 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~sp~~ 75 (392)
-+.+..|++|+.+.. +++.||. ++.+++..++.++......+ .+.+++.||.+.|.-+.|+.+.
T Consensus 13 nnvkL~c~~WNke~g---yIAcgG~------dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG---YIACGGA------DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCceEEEEEEcccCC---eEEeccc------cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc
Confidence 367899999999874 5776666 77799999987766554433 4567899999999999999999
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 155 (392)
+.|-++..+|.|.+|-+..+......... ...+-|.+++|+.||..++....||.|.+=.++..+.-.+... ..
T Consensus 84 QKLTtSDt~GlIiVWmlykgsW~EEMiNn-----RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-g~ 157 (1189)
T KOG2041|consen 84 QKLTTSDTSGLIIVWMLYKGSWCEEMINN-----RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-GQ 157 (1189)
T ss_pred ccccccCCCceEEEEeeecccHHHHHhhC-----cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-hh
Confidence 99999999999999999887643333221 2456889999999999999999999998877765433221111 12
Q ss_pred cEEEEEecCCCCeEEEEcCCCcEEEEECCCCe-------eeEEEe---cCCCcceEEEEec--------CCCCcceEEEE
Q 016257 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-------AWTFLT---RNSDEKIELCRFS--------KDGTKPFLFCT 217 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-------~~~~~~---~~~~~~v~~~~~~--------~~~~~~~~~~~ 217 (392)
....+.|++|.+.++.+-.+|.+.++|.+..- +..... ......+..+.|. |+... +
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-----l 232 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-----L 232 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-----E
Confidence 35578999999999989899999999976421 111111 1112235555554 35444 6
Q ss_pred EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC---------cEEEEecCCceeeeeeeccccC
Q 016257 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---------DICVVDVKKMEINHWSKRLHLG 288 (392)
Q Consensus 218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~ 288 (392)
+.+-..|.+.+..-.+......+. ....+....|+++|..||+++.+. .|.+|.. -|+....+. .. .
T Consensus 233 avcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vp-g 308 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VP-G 308 (1189)
T ss_pred EEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe-cC-C
Confidence 777777777776544333222222 236788899999999999988642 4555543 345444442 34 7
Q ss_pred cceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 289 TSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 289 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
..|++++|-..|-.++.+ .|+.|.+-+++.
T Consensus 309 ~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 309 SCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred ceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 899999998777666665 477888877763
No 228
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=8.3e-17 Score=144.48 Aligned_cols=240 Identities=15% Similarity=0.195 Sum_probs=172.2
Q ss_pred CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (392)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 188 (392)
..|..+|+|+.|...|.++++|+.|..++||.++++.+.....+|.+.|+.++.+.++.++++++.|..|++|.+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee---ecc-----------------------
Q 016257 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRL----------------------- 242 (392)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~---~~~----------------------- 242 (392)
+..+.+|.+ .|++++|+|- .+.+.||++++||.+-...+.. ...
T Consensus 267 vsvLrghtg-avtaiafsP~---------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 267 VSVLRGHTG-AVTAIAFSPR---------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred HHHHhcccc-ceeeeccCcc---------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 998887765 7999999995 4678899999999881110000 000
Q ss_pred ----cCCCcEEEEECCCCCEEEE-----------EeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEE
Q 016257 243 ----LRKPASVLSISLDGKYLAM-----------GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTA 306 (392)
Q Consensus 243 ----~~~~v~~~~~s~~~~~l~~-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 306 (392)
......+++|..++-.+++ .-.+-.+++|++.++.+.... .+| ...+..+.++|-+. ...++
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~gh-sd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGH-SDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-ccc-ccceeeeeecCCCcHhhhhc
Confidence 0011112223222222333 333456788888888877766 578 88999999999665 55689
Q ss_pred eCCCeEEEEEeecCccccceee--eeeeeeeeeeceEEEEee-ecceeeeecccccc
Q 016257 307 SKEWGAMITKLTVPADWKEWQI--YSLLLALFLASAVVFYIF-FENSDSFWNFPVAR 360 (392)
Q Consensus 307 ~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~i~~W~~~~~~ 360 (392)
+.||+..|||+-.+.+.+.+.. .....+.+...+.-+... .-|.+++....-++
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999999999987765544421 122333333333222222 23455555544433
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.1e-14 Score=128.43 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=138.2
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.|.++|...... ..+. .+...+...+|+|||+.|+..+. +..|++||+.+++.. .+....+.+...+|
T Consensus 183 ~l~~~d~dg~~~-~~lt-------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~ 253 (435)
T PRK05137 183 RLAIMDQDGANV-RYLT-------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF 253 (435)
T ss_pred EEEEECCCCCCc-EEEe-------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence 677888754432 2221 24568999999999999888763 467999999887653 33344556778899
Q ss_pred cCCCCeEE-EEcCCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeCCCceee
Q 016257 163 SLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKI 237 (392)
Q Consensus 163 ~~~~~~l~-~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~~~~~~ 237 (392)
+|||+.|+ +.+.++. |++||+++++.. .+..+ ........|+||++.++ +++.. ...|+++|+..++..
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~-~~~~~~~~~spDG~~i~----f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDS-PAIDTSPSYSPDGSQIV----FESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceE-EccCC-CCccCceeEcCCCCEEE----EEECCCCCCeEEEEECCCCCeE
Confidence 99998875 4555554 777898876553 34333 23466789999999732 22222 347889998766543
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
.+......+....|+|||++|+....+ ..|.+||+.++.... +.. ...+..+.|+|||+.|+..+.+
T Consensus 328 -~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt~---~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 328 -RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LTS---GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred -EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-ccC---CCCCCCCeECCCCCEEEEEEcc
Confidence 333334556678999999999887643 358888986655432 222 2356788999999988776553
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.9e-13 Score=110.17 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=135.4
Q ss_pred EEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC-ccce
Q 016257 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-ATDI 99 (392)
Q Consensus 21 ~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~-~~~~ 99 (392)
++.+||+...--.+|++-||+ |... .+.....+ ..+|.++.+.++ .|++.. .+.|+||...+. +...
T Consensus 61 laLVGGg~~pky~pNkviIWD-D~k~-----~~i~el~f---~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~ 128 (346)
T KOG2111|consen 61 LALVGGGSRPKYPPNKVIIWD-DLKE-----RCIIELSF---NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH 128 (346)
T ss_pred EEEecCCCCCCCCCceEEEEe-cccC-----cEEEEEEe---ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee
Confidence 444455543345688888887 2211 23333333 578999999876 566654 455999999744 3222
Q ss_pred eeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecCCCCeEEEEcCCC
Q 016257 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176 (392)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~ 176 (392)
.+.... ......+++-..+..+||. |-.-|.|+|-|+...+. ...+..|...|.+++.+.+|..+|++|..|
T Consensus 129 ~~et~~-----NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 129 VIETRS-----NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred eeeccc-----CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 222211 1223344443334555555 34569999999976554 456778888999999999999999999999
Q ss_pred c-EEEEECCCCeeeEEEecCC-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 177 S-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 177 ~-i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
+ |+|||.++++.+..+..+. ...|++++|+|+..+ ++.+++.|++.++.++.
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-----LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-----LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-----EEEEcCCCeEEEEEeec
Confidence 7 8999999999999987543 457999999999998 89999999999999875
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=1.2e-14 Score=115.82 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=107.3
Q ss_pred EEEEecCCCCEEEEEeC----------CCcEEEEeCCCC-ceeecc-cCCCCcEEEEEecCCCCeEEEE--cCCCcEEEE
Q 016257 116 KCLSFSVDGSRFAAGGV----------DGHLRIMHWPSL-RIILDE-PKAHKSVLDMDFSLDSEFLATT--STDGSARIW 181 (392)
Q Consensus 116 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~-~~~~~~-~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~vw 181 (392)
..+.|+|+|++|++-.. -+...+|.++.. .....+ ....++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56889999988776432 133555555322 222222 2234479999999999987654 456799999
Q ss_pred ECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe---CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE
Q 016257 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY 258 (392)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 258 (392)
|++ ++.+..+. ...+..+.|+|+|+. ++.+ ...|.|.+||.++.+.+..... ..++.++|+|+|++
T Consensus 89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~-----l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 89 DVK-GKKIFSFG---TQPRNTISWSPDGRF-----LVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRY 157 (194)
T ss_pred cCc-ccEeEeec---CCCceEEEECCCCCE-----EEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCE
Confidence 996 66666654 236789999999997 3443 3457899999998888766543 35789999999999
Q ss_pred EEEEeC------CCcEEEEecCCc
Q 016257 259 LAMGSK------DGDICVVDVKKM 276 (392)
Q Consensus 259 l~~~~~------dg~i~iwd~~~~ 276 (392)
|++++. |+.++||+....
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEeccceeccccEEEEEecCe
Confidence 999874 678999998643
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=129.08 Aligned_cols=288 Identities=14% Similarity=0.133 Sum_probs=208.9
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC--CCeEEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS 81 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~~ 81 (392)
.|-|..|.|+..+ .++++|+. +-.+.+|.|......+ .-..||...|..-.|-|. .+.++++
T Consensus 142 ~GcVntV~FN~~G---d~l~SgSD------D~~vv~WdW~~~~~~l-------~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 142 KGCVNTVHFNQRG---DVLASGSD------DLQVVVWDWVSGSPKL-------SFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred CCccceeeecccC---ceeeccCc------cceEEeehhhccCccc-------ccccccccchhhhhccCCCCCcCceec
Confidence 3668888999887 45776666 5568899987443222 123578889998899884 4579999
Q ss_pred eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc---cCCCC--
Q 016257 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHK-- 155 (392)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~-- 155 (392)
+.||.+++=.+......... ....+|.++|..++.-|+ ...|.+++.|+.+.-+|++.+.....+ .....
T Consensus 206 s~dgqvr~s~i~~t~~~e~t----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENT----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred cccCceeeeeeccccceecc----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 99999998776544332211 122348899999999995 457899999999999999876543222 22222
Q ss_pred -cEEEEEecCCCC-eEEEEcCCCcEEEEECCCCee------eEEEec-----CCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257 156 -SVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA------WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (392)
Q Consensus 156 -~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (392)
....++.+|... .+++++.|..+++||.+.-.. +.++.. .....|++++|+.++.. ++++-.
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLaSYn 356 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLASYN 356 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eeeeec
Confidence 568899999554 799999999999999874221 222221 22346899999988776 677777
Q ss_pred ccEEEEEeCCC--c----------eeee-eecccCC--CcEEEEE-CCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257 223 KALLAVYDIST--W----------NKIG-HKRLLRK--PASVLSI-SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 223 d~~i~v~d~~~--~----------~~~~-~~~~~~~--~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 286 (392)
|-.|+++.-.. + ..+. .+++|.. .|..+.| -|...|+++|+.-|.|.||+-++++.++.+. +.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gD 435 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GD 435 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cc
Confidence 88899995432 1 1112 2556643 4666655 5788999999999999999999999988774 44
Q ss_pred cCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
..-|+|+.=+|--..||+++-|.-|+||.-.
T Consensus 436 -r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 436 -RHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -cceEeccCCCCCCchhhccCCccceeeecCC
Confidence 4589999999999999999999999999774
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.2e-14 Score=131.39 Aligned_cols=188 Identities=21% Similarity=0.195 Sum_probs=125.1
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEE--CC
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWK--TE 184 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd--~~ 184 (392)
+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+|||+.|+ +.+.++...+|. +.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 45678899999999999887643 359999998887543 333334567889999999876 466777766665 44
Q ss_pred CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE--eCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (392)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 262 (392)
.+. ...+..+ ........|+|||+.+ ++++..++...+| ++.+++.. .+..........+|||||++|+..
T Consensus 273 ~~~-~~~lt~~-~~~~~~~~wSpDG~~l----~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 273 GSG-LRRLTQS-SGIDTEPFFSPDGRSI----YFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCC-cEECCCC-CCCCcCeEEcCCCCEE----EEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence 433 3444333 2345678899999973 2233334444455 55554432 222223334468999999999887
Q ss_pred eCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 263 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
+.++ .|.+||+.+++..... . ......+.|+|||+.|+.++.++
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt-~---~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALT-D---TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEcc-C---CCCccCceECCCCCEEEEEEecC
Confidence 7654 5999999988765433 2 22346789999999888877654
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=131.25 Aligned_cols=209 Identities=15% Similarity=0.189 Sum_probs=151.9
Q ss_pred CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc-CCCCcEEEEEecC--CCCeEEEEcCCCcEEEEECCC
Q 016257 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTED 185 (392)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~ 185 (392)
..|.+-|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|..|..|+++|+..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 3589999999999999999999999999999998777665554 4556899999998 557899999999999999974
Q ss_pred C----------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee----------eeecccCC
Q 016257 186 G----------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----------GHKRLLRK 245 (392)
Q Consensus 186 ~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~----------~~~~~~~~ 245 (392)
. .....+..|. ..|..++-.|++... +.++++||+|+-||++....- ......--
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht-~rVKria~~p~~Pht----fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHT-DRVKRIATAPNGPHT----FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ccccccccCccchhhhhhhhh-hhhhheecCCCCCce----EEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 2 2223333443 368889999999663 689999999999999863211 01111123
Q ss_pred CcEEEEECCC-CCEEEEEeCCCcEEEEecCC--------ce----------eeeeeecccc----------CcceEEEEE
Q 016257 246 PASVLSISLD-GKYLAMGSKDGDICVVDVKK--------ME----------INHWSKRLHL----------GTSIALVEF 296 (392)
Q Consensus 246 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~~~~~----------~~~i~~~~~ 296 (392)
...++.++|. ..+|++|+.|-..++||.+. +. +...+..+|. ...++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 4568899995 47899999999999999432 11 1222222331 123677899
Q ss_pred eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 297 CPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 297 s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
+|+|.-|+..-..-.|+++++...+.
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99998555544444899999986654
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.3e-14 Score=129.90 Aligned_cols=213 Identities=19% Similarity=0.147 Sum_probs=139.3
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~ 161 (392)
.+|.+||..... ...+. .+...+...+|+|||+.|+..+.+ ..|++||+.+++... +....+......
T Consensus 184 ~~l~i~D~~g~~-~~~lt-------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYN-PQTIL-------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCC-ceEee-------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCce
Confidence 358888875443 22221 245678899999999999987643 469999998876542 223334455789
Q ss_pred ecCCCCeEE-EEcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCCcee
Q 016257 162 FSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNK 236 (392)
Q Consensus 162 ~~~~~~~l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~ 236 (392)
|+|||+.|+ +.+.++ .|++||+.+++.. .+..+ ......++|+||++.+ ++++..++ .|+++|+.+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~spDG~~l----~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNH-FGIDTEPTWAPDGKSI----YFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccC-CCCccceEECCCCCEE----EEEECCCCCceEEEEECCCCCe
Confidence 999999776 445555 5999999877643 33332 2245678999999972 23333333 477778776654
Q ss_pred eeeecccCCCcEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeE
Q 016257 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGA 312 (392)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i 312 (392)
. .+.........++|+|||++|+..+.++ .|.+||+.+++..... . ........|+|||++|+..+.+ +.-
T Consensus 329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~---~~~~~~p~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 329 E-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P---GSLDESPSFAPNGSMVLYATREGGRG 403 (433)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-C---CCCCCCceECCCCCEEEEEEecCCce
Confidence 3 2222333455789999999998876443 5999999888765332 2 2244567999999988776653 333
Q ss_pred EEEEe
Q 016257 313 MITKL 317 (392)
Q Consensus 313 ~iw~~ 317 (392)
.+|.+
T Consensus 404 ~L~~~ 408 (433)
T PRK04922 404 VLAAV 408 (433)
T ss_pred EEEEE
Confidence 34433
No 236
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=8.6e-15 Score=125.59 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=112.0
Q ss_pred CCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccc-------------eeecc---ccC-CC----CCCCCCeEEEEe
Q 016257 63 EGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATD-------------INLLA---KKM-PP----LQDAGPQKCLSF 120 (392)
Q Consensus 63 ~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~-------------~~~~~---~~~-~~----~~~~~~v~~~~~ 120 (392)
+..|+|+.|-|.+ ..++++-.+|.++++|....... ..+.. ... .+ .-..+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999954 46667788999999986422110 00000 000 00 012457899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcce
Q 016257 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI 200 (392)
Q Consensus 121 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v 200 (392)
+|||++||+.+.||.+||+|..+.+.+..+...-+...|++|||||++|++|++|.-|.||.+..++.+..-++| ..+|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH-kSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH-KSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc-ccce
Confidence 999999999999999999999988877666667788999999999999999999999999999999888877765 5599
Q ss_pred EEEEecC
Q 016257 201 ELCRFSK 207 (392)
Q Consensus 201 ~~~~~~~ 207 (392)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999983
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-13 Score=119.36 Aligned_cols=276 Identities=14% Similarity=0.080 Sum_probs=187.6
Q ss_pred CCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 61 ESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
+|...-+.|..+|||+|+ |+|..--.|++||+.+.... +... -....|.-.-++.|-..++.-..|.+|.+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERh-----lDae~V~feiLsDD~SK~v~L~~DR~IefH 121 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERH-----LDAEVVDFEILSDDYSKSVFLQNDRTIEFH 121 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeec-----ccccceeEEEeccchhhheEeecCceeeeh
Confidence 467888999999999975 56777888999999765432 2111 023455555566666666666778777665
Q ss_pred eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
..- |... .+ .-...-.+++++.-..-|+.++....|+-++++.|..+..+.... +.++++..++.... +++
T Consensus 122 ak~-G~hy-~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgL-----la~ 192 (703)
T KOG2321|consen 122 AKY-GRHY-RT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGL-----LAC 192 (703)
T ss_pred hhc-Ceee-ee-ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccce-----EEe
Confidence 421 2111 00 111223456665533335555555779999999999888887654 46999999998775 788
Q ss_pred eCCccEEEEEeCCCceeeeeecc------cC-----CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccC
Q 016257 220 RGDKALLAVYDISTWNKIGHKRL------LR-----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG 288 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~~~~~------~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 288 (392)
|+.+|.+..||.+....+..+.. +. ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++.....+. .
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-e 271 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-E 271 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-c
Confidence 88899999999998765544432 22 249999999999999999999999999999998877665555 7
Q ss_pred cceEEEEEeeC--CCeEEEEeCCCeEEEEEeecCccccceeeeee--eeeeeeeceEEEEeeecceeeee
Q 016257 289 TSIALVEFCPT--QRVVLTASKEWGAMITKLTVPADWKEWQIYSL--LLALFLASAVVFYIFFENSDSFW 354 (392)
Q Consensus 289 ~~i~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~W 354 (392)
-+|..+.|.+. +..+++. ....++||+-..++.......... ..+....++..+++.-...+..+
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 79999999876 3345544 446899999988776654433222 23334455566666544444333
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=1.7e-11 Score=107.67 Aligned_cols=275 Identities=15% Similarity=0.177 Sum_probs=169.4
Q ss_pred eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-CCe
Q 016257 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGG 86 (392)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-d~~ 86 (392)
..++++|++.. ..++.... ...+.|..|.++.++..+. .. ............++++|++++|+++.. +|.
T Consensus 40 s~l~~~~~~~~-LY~~~e~~----~~~g~v~~~~i~~~~g~L~--~~--~~~~~~g~~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 40 SWLAVSPDGRR-LYVVNEGS----GDSGGVSSYRIDPDTGTLT--LL--NSVPSGGSSPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp CCEEE-TTSSE-EEEEETTS----STTTEEEEEEEETTTTEEE--EE--EEEEESSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred ceEEEEeCCCE-EEEEEccc----cCCCCEEEEEECCCcceeE--Ee--eeeccCCCCcEEEEEecCCCEEEEEEccCCe
Confidence 34667777644 22221111 1366788888887643331 11 122223456778999999999998874 889
Q ss_pred EEEEEEeCCccceeecc-------ccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCc--ee--ecc-cCC
Q 016257 87 CKLFEVYGGATDINLLA-------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLR--II--LDE-PKA 153 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~-~~~ 153 (392)
+.++++........... ......+......++.|+|+++++++... ...|++|++.... .. ... ...
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 99999987432222110 00111123456889999999998887653 4579999997655 21 111 223
Q ss_pred CCcEEEEEecCCCCeEEEEc-CCCcEEEEECC--CCe--eeEEEecC---C--CcceEEEEecCCCCcceEEEEEEeCCc
Q 016257 154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTE--DGV--AWTFLTRN---S--DEKIELCRFSKDGTKPFLFCTVQRGDK 223 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~--~~~--~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (392)
......+.|+|+++++++.. .+++|.++++. +++ .+..+... . ......++++||++++ .++....
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l----yvsnr~~ 266 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL----YVSNRGS 266 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE----EEEECTT
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE----EEEeccC
Confidence 34688999999999876654 56789999988 332 22222211 1 1257889999999974 3556668
Q ss_pred cEEEEEeCCC--c--eeeeeecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEec--CCceeeeeeeccccCcceEEEEE
Q 016257 224 ALLAVYDIST--W--NKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEINHWSKRLHLGTSIALVEF 296 (392)
Q Consensus 224 ~~i~v~d~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~ 296 (392)
+.|.+|++.. + +.+..........+.++++|+|++|+++.. ++.|.+|++ ++|++...-.... .....|+.|
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~-~~~p~ci~f 345 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP-IPSPVCIVF 345 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE-SSSEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc-CCCCEEEeC
Confidence 8999999942 2 233344444455789999999999998874 568999976 4666555432222 456666665
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=7.2e-13 Score=119.19 Aligned_cols=242 Identities=17% Similarity=0.117 Sum_probs=145.4
Q ss_pred eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe--E-EEEeCCC--eEEEEEEeCCccceeeccccCCCCCC
Q 016257 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD--F-VCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQD 111 (392)
Q Consensus 37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l-~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (392)
-.||..+.++... ..+..........+|+|||+. + ++...++ .|.+.++.+++.. .+.. .
T Consensus 165 ~~l~~~d~dG~~~-------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-------~ 229 (428)
T PRK01029 165 GELWSVDYDGQNL-------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA-------L 229 (428)
T ss_pred ceEEEEcCCCCCc-------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec-------C
Confidence 4577777655432 123334566788899999975 3 2444443 4677777665422 1111 1
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CC----cEEEEeCCCC--ceeecccCCC-CcEEEEEecCCCCeEEEEc-CCCcEEEE-
Q 016257 112 AGPQKCLSFSVDGSRFAAGGV-DG----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW- 181 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~-dg----~i~i~d~~~~--~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~d~~i~vw- 181 (392)
.+.....+|||||+.|+..+. +| .+..|++..+ .....+.... ......+|+|||+.|+..+ .+|...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 234456899999998887653 22 3444676643 1222222222 3346789999999877665 46655555
Q ss_pred -ECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEE
Q 016257 182 -KTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (392)
Q Consensus 182 -d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 259 (392)
++.. +.....+.... ..+....|+|||+.+++ .........|.+||+.+++... +......+....|+|||+.|
T Consensus 310 ~~~~~~g~~~~~lt~~~-~~~~~p~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKY-RNSSCPAWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHL 385 (428)
T ss_pred EECcccccceEEeccCC-CCccceeECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEE
Confidence 4432 22333343332 35678899999997321 1111223579999999887643 33233456789999999988
Q ss_pred EEEeC---CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 260 AMGSK---DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 260 ~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
+..+. ...|+++|+.+++...... . .+.+...+|+|-.
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~-~g~~~~p~Ws~~~ 426 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKKTRKIVI--G-SGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeec--C-CCcccCceecCCC
Confidence 76543 3568899998887655442 2 4567788888753
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=8.9e-13 Score=115.60 Aligned_cols=274 Identities=13% Similarity=0.129 Sum_probs=170.6
Q ss_pred CeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257 76 DDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (392)
Q Consensus 76 ~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 154 (392)
++++ +-..++.|.+.|..+.+...++... ...-..+.|+|||+++++++.||.|.++|+.+.+.+.+.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTG-------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-S-------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCC-------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 3443 4456899999999887766555431 1122457899999999999999999999999999887765543
Q ss_pred CcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecC------CCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257 155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (392)
...++++++||++++++. .++.+.++|.++.+.++.+... ....+..+..+|.... + +++--+.+.|.
T Consensus 79 -~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-f---Vv~lkd~~~I~ 153 (369)
T PF02239_consen 79 -NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-F---VVNLKDTGEIW 153 (369)
T ss_dssp -EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-E---EEEETTTTEEE
T ss_pred -CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-E---EEEEccCCeEE
Confidence 467899999999988775 6799999999999998887543 2235677888888774 1 45556668898
Q ss_pred EEeCCCceeee-eecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeecc------------cc------
Q 016257 228 VYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRL------------HL------ 287 (392)
Q Consensus 228 v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~------------~~------ 287 (392)
+.|....+.+. .............|+|++++++++ ..++.|-++|.++++....+..+ |.
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred EEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 98987654432 222234567789999999987765 45567888888877654432100 00
Q ss_pred ----------------------------------CcceEEEEEeeCCCeEEEE----eCCCeEEEEEeecCcccc-----
Q 016257 288 ----------------------------------GTSIALVEFCPTQRVVLTA----SKEWGAMITKLTVPADWK----- 324 (392)
Q Consensus 288 ----------------------------------~~~i~~~~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~----- 324 (392)
.+.-..+..+|+++++.+. ...+.|.++|....+...
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc
Confidence 1111445678999998887 445899999998764322
Q ss_pred ----ceeeeeeeeeeeeeceEEEEee-e-cceeeeecccccccccCCC
Q 016257 325 ----EWQIYSLLLALFLASAVVFYIF-F-ENSDSFWNFPVARNQHGGP 366 (392)
Q Consensus 325 ----~~~~~~~~~~~~~~~~~~~~~~-~-d~~i~~W~~~~~~~~~~~p 366 (392)
..+..+...+ ..+.... . ++.|.++|..+.+.....|
T Consensus 314 ~~~~~~h~ef~~dG-----~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 314 PGKRVVHMEFNPDG-----KEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HT--EEEEEE-TTS-----SEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCcEeccEECCCC-----CEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 1122333322 2222222 2 3379999999988776655
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.6e-11 Score=101.29 Aligned_cols=274 Identities=15% Similarity=0.216 Sum_probs=183.0
Q ss_pred cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCC
Q 016257 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQ 110 (392)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~ 110 (392)
...|.+|.++.....+.. ..+-.+.+.++-++|+|+++.|+++..+ |.|..|.+........+......
T Consensus 15 s~gI~v~~ld~~~g~l~~-----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--- 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL-----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--- 86 (346)
T ss_pred CCceEEEEEeCcccccch-----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc---
Confidence 556899999966654432 2233467889999999999999988655 66888888764222232221111
Q ss_pred CCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCC-Ccee--ecccCCCC----------cEEEEEecCCCCeEEEEcC-C
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPS-LRII--LDEPKAHK----------SVLDMDFSLDSEFLATTST-D 175 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~-~~~~--~~~~~~~~----------~i~~i~~~~~~~~l~~~~~-d 175 (392)
...+...++++++|++++++.. .|.|.++-++. |... .....|.+ .+....+.|++++|++... -
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence 2234488999999999998875 58899998865 3221 11122222 2788899999999988763 2
Q ss_pred CcEEEEECCCCeeeEE--EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc--e--eeeeecc------c
Q 016257 176 GSARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--N--KIGHKRL------L 243 (392)
Q Consensus 176 ~~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--~--~~~~~~~------~ 243 (392)
..|.+|++..++.... .....+...+.++|+|+++..| +..--+++|.+|..+.. + .++.+.. .
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY----~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY----LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE----EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 4699999987754322 1123344578999999999743 45566889999988763 2 1222211 1
Q ss_pred CCCcEEEEECCCCCEEEEEeC-CCcEEEEecCC--ceeeeee-eccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257 244 RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK--MEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT 318 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~ 318 (392)
.....++.++|||++|+++.. ...|.+|.+.. +++.... ...+ ........|+++|++|+++..+ ..|.++.++
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 346678999999999998864 34688887653 4332221 1223 4458899999999998888764 578999887
Q ss_pred cC
Q 016257 319 VP 320 (392)
Q Consensus 319 ~~ 320 (392)
..
T Consensus 322 ~~ 323 (346)
T COG2706 322 KE 323 (346)
T ss_pred CC
Confidence 43
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=7.2e-13 Score=120.58 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=149.0
Q ss_pred ceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCC
Q 016257 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDA 112 (392)
Q Consensus 36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
.-++|..+.++... ..+..+...+....|+|||+.|+..+.+ ..|.+|++.+++... +. ...
T Consensus 178 ~~~l~~~d~~g~~~-------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-------~~~ 242 (430)
T PRK00178 178 RYTLQRSDYDGARA-------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-------NFE 242 (430)
T ss_pred ceEEEEECCCCCCc-------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-------CCC
Confidence 34577766554321 2344567789999999999999876543 368889987765321 11 112
Q ss_pred CCeEEEEecCCCCEEEE-EeCCC--cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCC
Q 016257 113 GPQKCLSFSVDGSRFAA-GGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDG 186 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~ 186 (392)
+.+....|+|||+.|+. .+.+| .|+++|+++++.. .+..+........|+|||+.|+..+. ++ .|+++++.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34457899999998874 44444 5888899887654 34444445667889999998776553 33 5777888777
Q ss_pred eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC-
Q 016257 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD- 265 (392)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 265 (392)
+........ .......|+|+++.+++ .........|.++|+.+++... +.. ........|+|||+.++..+.+
T Consensus 322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~--~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 322 RAERVTFVG--NYNARPRLSADGKTLVM--VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred CEEEeecCC--CCccceEECCCCCEEEE--EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecC
Confidence 643322211 23446789999997321 1111223468899998876532 222 2223356899999998877654
Q ss_pred --CcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257 266 --GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 266 --g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
..|.++++...... .+. .+ .+.+...+|+|-
T Consensus 396 g~~~l~~~~~~g~~~~-~l~-~~-~g~~~~p~ws~~ 428 (430)
T PRK00178 396 GRGVLMLVSINGRVRL-PLP-TA-QGEVREPSWSPY 428 (430)
T ss_pred CceEEEEEECCCCceE-ECc-CC-CCCcCCCccCCC
Confidence 34677777544332 222 23 456777888763
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.2e-12 Score=118.67 Aligned_cols=222 Identities=16% Similarity=0.141 Sum_probs=137.5
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeC-CC--eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCC
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTT-NG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG 134 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg 134 (392)
+..+...+.+..|+|||+.|+..+. ++ .|++||+.+++... +.. ..+.....+|+|||+.|+. .+.++
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~-------~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTS-------FPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecC-------CCCCcCCeeECCCCCEEEEEEeCCC
Confidence 3445678899999999999887654 32 58888887665311 110 1123346899999998865 45566
Q ss_pred c--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257 135 H--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (392)
Q Consensus 135 ~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (392)
. |+++|+++++.. .+..+.......+|+||++.|+..+. ++ .|+++|+.+++... +... .......+|+|||
T Consensus 285 ~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG 361 (448)
T PRK04792 285 QPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDG 361 (448)
T ss_pred CeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCC
Confidence 4 777888877653 34444445677899999998876553 33 46777877666433 2211 1123457899999
Q ss_pred CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC-C--cEEEEecCCceeeeeeeccc
Q 016257 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~ 286 (392)
+.+++ .........|.++|+.+++... +... .......|+|||+.|+..+.+ + .+.+++.. +.....+ ..+
T Consensus 362 ~~l~~--~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l-~~~ 435 (448)
T PRK04792 362 RSMIM--VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL-PAG 435 (448)
T ss_pred CEEEE--EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC-cCC
Confidence 87321 1111222367778888776432 2221 122345899999988776643 3 36777874 4444433 233
Q ss_pred cCcceEEEEEee
Q 016257 287 LGTSIALVEFCP 298 (392)
Q Consensus 287 ~~~~i~~~~~s~ 298 (392)
.+.+...+|+|
T Consensus 436 -~g~~~~p~Wsp 446 (448)
T PRK04792 436 -QGEVKSPAWSP 446 (448)
T ss_pred -CCCcCCCccCC
Confidence 45677888887
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.60 E-value=5.1e-13 Score=121.38 Aligned_cols=205 Identities=17% Similarity=0.116 Sum_probs=136.7
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.|.++|..... ...+. .+...+...+|+|||++|+.+..+ ..|++||+.+++... .......+..+.|
T Consensus 171 ~l~~~d~~g~~-~~~l~-------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDGAN-PQTIT-------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCCCC-CEEee-------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 57777765333 22221 134568889999999999887644 479999998876543 2334445667899
Q ss_pred cCCCCeEEE-EcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeCCCceee
Q 016257 163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKI 237 (392)
Q Consensus 163 ~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~~~~~~ 237 (392)
+||++.|+. .+.++ .|++||+.+++.. .+..+ ........|+|+++.+ ++++.. ...|+++|+.+++..
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~s~dg~~l----~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNG-PGIDTEPSWSPDGKSI----AFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCC-CCCCCCEEECCCCCEE----EEEECCCCCceEEEEECCCCCEE
Confidence 999987764 44444 5888998876543 33322 2234567899999873 222322 236888898876543
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
.+.........+.|+|+|++++.++.++ .|.+||+.++....... ........|+|||++|+..+.++
T Consensus 316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----CCCCCCceECCCCCEEEEEEeCC
Confidence 3333455667889999999999888775 78999998865443321 12345568999999888877664
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.4e-12 Score=111.47 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=158.0
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC--CEEEE-----EeCCCcEEEE
Q 016257 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAA-----GGVDGHLRIM 139 (392)
Q Consensus 67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~i~ 139 (392)
++..|++|..+.|- -..+.+++|+..+.+...... |...+..+.+||.+ ..+|+ .+.-..++||
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl--------~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~ 199 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKL--------SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY 199 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccceeeee--------eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence 68899988754433 345669999998754322221 45678999999863 34443 2445679999
Q ss_pred eCCCCceee--cccC-CCCcEEEEEecCCCCe-EEEEc--CC---------CcEEEEECCCCeeeEEEecCCCcceEEEE
Q 016257 140 HWPSLRIIL--DEPK-AHKSVLDMDFSLDSEF-LATTS--TD---------GSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (392)
Q Consensus 140 d~~~~~~~~--~~~~-~~~~i~~i~~~~~~~~-l~~~~--~d---------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 204 (392)
......... .... ....=-.+.|++-|.- |+.++ -| .++++.+++...+...+ ...++|+++.
T Consensus 200 ~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~ 277 (566)
T KOG2315|consen 200 KYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVT 277 (566)
T ss_pred ccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEE
Confidence 875222111 1111 1112235778886653 33222 22 46888888743443333 3456999999
Q ss_pred ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeee
Q 016257 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHW 281 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 281 (392)
|+|+++. |+++.|-.-..+.+||++. +++. ....++-+++-|+|.|++++.++-+ |.+-|||+.+.+.+..
T Consensus 278 W~~s~~E---F~VvyGfMPAkvtifnlr~-~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 278 WSPSGRE---FAVVYGFMPAKVTIFNLRG-KPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred ECCCCCE---EEEEEecccceEEEEcCCC-CEeE--eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 9999986 3366777788999999984 4443 3345677889999999999887754 7899999999887776
Q ss_pred eeccccCcceEEEEEeeCCCeEEEEeC------CCeEEEEEeecC
Q 016257 282 SKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVP 320 (392)
Q Consensus 282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~ 320 (392)
+. ...-+-+.|+|||+++++++. |+.++||++...
T Consensus 352 ~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 352 FK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 53 345677899999999998875 689999999754
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-13 Score=110.33 Aligned_cols=253 Identities=14% Similarity=0.186 Sum_probs=164.6
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC------------CCeeEEEEcC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAVNP 73 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~sp 73 (392)
-|.++.|...+ ..+++|...|. +.++.-+..... .......++.|. ..|..+.|.+
T Consensus 27 iis~vef~~~G---e~LatGdkgGR------Vv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 27 IISAVEFDHYG---ERLATGDKGGR------VVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred ceeeEEeeccc---ceEeecCCCCe------EEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 47788999888 45888887544 555554432211 111223343443 4789999998
Q ss_pred CCC--eEEEEeCCCeEEEEEEeCCccce---------------ee--------------ccccCCCCCCCCCeEEEEecC
Q 016257 74 SGD--DFVCSTTNGGCKLFEVYGGATDI---------------NL--------------LAKKMPPLQDAGPQKCLSFSV 122 (392)
Q Consensus 74 ~~~--~l~~~~~d~~i~iw~~~~~~~~~---------------~~--------------~~~~~~~~~~~~~v~~~~~s~ 122 (392)
+++ .++..+.|.+|++|.+....... .+ .........|.-.|+++.++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 765 56666789999999986554321 00 000011123667789999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce---eecccCCC-----CcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCee----e
Q 016257 123 DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA----W 189 (392)
Q Consensus 123 ~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~----~ 189 (392)
|+..++++. |-.|.+|+++--.. +..+..+. .-|++..|+|. .+.++.++..|+|++.|++.... .
T Consensus 175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 999998864 78899999863322 22233322 25889999994 46777788889999999984321 1
Q ss_pred EEEecCC-----------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccC------------C
Q 016257 190 TFLTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLR------------K 245 (392)
Q Consensus 190 ~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~------------~ 245 (392)
..+..+. -..|..+.|+++|++ +.+-+--+|++||+. ..+++.....|. .
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGry------ilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY------ILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcE------EEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 1111111 124778999999996 444445789999994 445554444432 1
Q ss_pred C---cEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257 246 P---ASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 246 ~---v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 277 (392)
. -..++|+-++.++++|+..+..++|+...+.
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1 2357899999999999999999999976554
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=1.2e-12 Score=118.98 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=130.8
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCC
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG 134 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 134 (392)
+..+...+...+|+|||++|+.+... ..|++||+.+++.... . .+.+.+.+++|+|||+.|+.. +.++
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~-------~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-A-------SFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-e-------cCCCCccceEECCCCCEEEEEECCCC
Confidence 44566678999999999999987643 4799999887643211 1 123456678999999977654 4443
Q ss_pred --cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (392)
Q Consensus 135 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (392)
.|++|++.+++.. .+..+........|+||++.|+..+. ++ .|+++|+.+++.. .+... ......+.|+|++
T Consensus 257 ~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spdg 333 (417)
T TIGR02800 257 NPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPDG 333 (417)
T ss_pred CccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCCC
Confidence 5888998876543 33333344556789999998876654 33 5888888766543 33322 2356788999999
Q ss_pred CcceEEEEEEeCCc---cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC---cEEEEecCC
Q 016257 210 TKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKK 275 (392)
Q Consensus 210 ~~~~~~~~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~ 275 (392)
+. ++....+ ..|.+||+.++... .+.. ........|+|+|++|+..+.++ .+.+.+...
T Consensus 334 ~~-----i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 334 DL-----IAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CE-----EEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 86 3333333 37999999875442 2222 22344568999999988877654 355555443
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.58 E-value=2.2e-11 Score=104.48 Aligned_cols=241 Identities=11% Similarity=0.004 Sum_probs=150.9
Q ss_pred EcCCCCeEEEEeC----------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-C-CCcEEE
Q 016257 71 VNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRI 138 (392)
Q Consensus 71 ~sp~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-dg~i~i 138 (392)
++||++.|+++.. +..|.+||..+.+...++.....+..........++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887654 678999999999877666543332222234456899999999999876 3 689999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-Cee-eEEEec--CCCcce-EEEEecC-CCCcc
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTR--NSDEKI-ELCRFSK-DGTKP 212 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~-~~~~~~--~~~~~v-~~~~~~~-~~~~~ 212 (392)
.|+.+++.+.++.-.. ...-...+++.. ++ -+.||......+.+ ++. ...... ....++ ..-.|.+ ++..
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~- 208 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDTF-FM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL- 208 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCcc-EE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE-
Confidence 9999998876654422 111122222222 21 12344443333322 111 111110 100000 1114455 7765
Q ss_pred eEEEEEEeCCccEEEEEeCCCc-----eeeeeecc-------cCCCcEEEEECCCCCEEEEEeC----------CCcEEE
Q 016257 213 FLFCTVQRGDKALLAVYDISTW-----NKIGHKRL-------LRKPASVLSISLDGKYLAMGSK----------DGDICV 270 (392)
Q Consensus 213 ~~~~~~~~~~d~~i~v~d~~~~-----~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~i 270 (392)
++.+.+ |.|.+.|+... +....+.. ......-++++|+++.+++... .+.|.+
T Consensus 209 ----~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 209 ----VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred ----EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 344444 99999996432 22222111 1234445999999999888531 247999
Q ss_pred EecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW 323 (392)
Q Consensus 271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~ 323 (392)
+|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|....+..
T Consensus 284 iD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 284 VDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 99999999988765 45899999999999 777666 5788999998766543
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=6.4e-13 Score=122.82 Aligned_cols=269 Identities=12% Similarity=0.093 Sum_probs=178.0
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC--CCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--AGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
+++.+.++-. ++|++|... .+.+||+..+.....+...+.... | .+.+. -.+.+++++..-+.+..-+.
T Consensus 8 ~~l~~~~~~~--~~llag~gp-~i~~yd~~s~~li~~~~~~~~~~~-H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGSGP-EILVYDLSSGCLIRHLIQSKILEV-HRGEGKVK-----LLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccchhhcc--ceeeecCCC-ceEEeeCCchhHhhhhhhhccccc-ccccccce-----eccceEEEEEeecceeecch
Confidence 3444444433 577776444 499999988876554433221111 1 00000 01234555544443333222
Q ss_pred CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEE---ecCCCCcceEEEEE
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR---FSKDGTKPFLFCTV 218 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~ 218 (392)
.. + ....-.+.|....+.-+.+.++.++.+..+.+||...+.....+.........++. ++++.-+ ++
T Consensus 79 ~~-~---~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~-----i~ 149 (967)
T KOG0974|consen 79 SN-Q---IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELY-----IA 149 (967)
T ss_pred hh-h---hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEE-----EE
Confidence 11 1 11112234444556667788888888999999999887776666544433333332 2333332 68
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 298 (392)
+++--+.|.+|+....+....+.+|.+.+..+.++-||+++++.++|.++++|++.+.+......-+| ...|+.+.|.|
T Consensus 150 ~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~ 228 (967)
T KOG0974|consen 150 SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLP 228 (967)
T ss_pred eccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEecc
Confidence 88889999999988544444688999999999999999999999999999999999998777444688 99999999999
Q ss_pred CCCeEEEEeCCCeEEEEEeec--------CccccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257 299 TQRVVLTASKEWGAMITKLTV--------PADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV 358 (392)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~ 358 (392)
+ .+++++.|-+.++|+.+. +.....|.....+. .....+++.|+.+++|++..
T Consensus 229 n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~-----~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIG-----VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCC-----ceEEEeeccCcchhhhhhhc
Confidence 8 899999999999995542 22223444444433 34677788999999999863
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4e-12 Score=114.43 Aligned_cols=198 Identities=16% Similarity=0.049 Sum_probs=122.0
Q ss_pred CCeEEEEecCCCCEE---EEEeCCC--cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC----cEEEEE
Q 016257 113 GPQKCLSFSVDGSRF---AAGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG----SARIWK 182 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l---~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~----~i~vwd 182 (392)
.....-.|||||+.+ ++...+| .|++.++.+++... +....+......|+|||+.|+..+. +| .+..|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 455678999999752 2333343 57788888776432 2333444556899999998886553 22 344477
Q ss_pred CCCC--eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCC-ceeeeeecccCCCcEEEEECCCCC
Q 016257 183 TEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDIST-WNKIGHKRLLRKPASVLSISLDGK 257 (392)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~ 257 (392)
+..+ .....+...........+|+|||+.+ ++++..++ .|.++++.. +.....+......+....|||||+
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L----af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL----VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEE----EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 6643 12233332222234678999999973 23333445 455555542 222333444445667899999999
Q ss_pred EEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC-C--CeEEEEEee
Q 016257 258 YLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK-E--WGAMITKLT 318 (392)
Q Consensus 258 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~iw~~~ 318 (392)
.|+..+.+ ..|.+||+.+++...... . ...+....|+|||+.|+.... + ..|.++++.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQLTT--S-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEccC--C-CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 98876643 369999999887755432 2 345678999999998775443 3 345555554
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=6.9e-12 Score=114.17 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=136.1
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~ 162 (392)
.|.++|...... ..+. .+...+....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|
T Consensus 180 ~l~~~d~~g~~~-~~l~-------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGARA-VTLL-------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCCc-eEEe-------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence 366666654432 1111 244578899999999999876643 368999998876543 3333344557899
Q ss_pred cCCCCeEEE-EcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeCCCceee
Q 016257 163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKI 237 (392)
Q Consensus 163 ~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~~~~~~ 237 (392)
+|||+.|+. .+.++ .|+++|+++++.. .+..+ ........|+||++.++ +++.. ...|+++|+.+++..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg~~i~----f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDGRTLY----FTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccC-CCCcCCeEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence 999998874 44454 5888899877643 33332 23456789999999732 23332 346888888776643
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCC-C--cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEE
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAM 313 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~ 313 (392)
. +...........|+|+|++|+..+.+ + .|.++|+.+++...... . .......|+|||++++..+.+ +.-+
T Consensus 325 ~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 325 R-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred E-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceE
Confidence 2 22222334467899999999887653 3 48889998887544322 1 122356899999988776654 4444
Q ss_pred EEEee
Q 016257 314 ITKLT 318 (392)
Q Consensus 314 iw~~~ 318 (392)
+|-+.
T Consensus 400 l~~~~ 404 (430)
T PRK00178 400 LMLVS 404 (430)
T ss_pred EEEEE
Confidence 44443
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.54 E-value=8.3e-12 Score=99.74 Aligned_cols=284 Identities=12% Similarity=0.101 Sum_probs=175.2
Q ss_pred eEEEeCCCCCCCC------CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC---CCC-eEEEEeCCCeEEE
Q 016257 20 NLVVLGKSSRASS------SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVCSTTNGGCKL 89 (392)
Q Consensus 20 ~~~~~g~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~-~l~~~~~d~~i~i 89 (392)
++++.|.....-+ --+++.+|.+..... .+.....-. -...+..+.|.- +|. .++-+...|.|.+
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~----~~l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~ 99 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKL----SPLDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQL 99 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeeccccc----Cccceeeee-cccccceeeeeeccCCccceeeeccccceEEE
Confidence 4677665432222 235667777653321 221111122 245677888864 455 5666778899999
Q ss_pred EEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecC-CC
Q 016257 90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DS 166 (392)
Q Consensus 90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~-~~ 166 (392)
+..........+..-....+. .....++.|++.+..++++..+|.+.+-+...... .+..+.|.-++....|+. +.
T Consensus 100 ~r~~~~~ss~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 100 YRNDEDESSVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred Eeeccceeeeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence 987655433333221111111 11356788999999999999999998655443332 234556666888888876 45
Q ss_pred CeEEEEcCCCcEEEEECCC-CeeeEE-EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeeeccc
Q 016257 167 EFLATTSTDGSARIWKTED-GVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLL 243 (392)
Q Consensus 167 ~~l~~~~~d~~i~vwd~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~ 243 (392)
+.+++|+.|+.+..||+|. ++.+.. ...|+ ..|.++.-+|.... ++++|+.|..|++||.|+ ++++.. ...
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~-~GV~SI~ss~~~~~----~I~TGsYDe~i~~~DtRnm~kPl~~-~~v 252 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT-SGVVSIYSSPPKPT----YIATGSYDECIRVLDTRNMGKPLFK-AKV 252 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeee-cceEEEecCCCCCc----eEEEeccccceeeeehhcccCcccc-Ccc
Confidence 7889999999999999993 333333 22333 35888888876443 289999999999999995 444433 334
Q ss_pred CCCcEEEEECCCC--CEEEEEeCCCcEEEEecCCcee----eeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEE-EE
Q 016257 244 RKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAM-IT 315 (392)
Q Consensus 244 ~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-iw 315 (392)
.+.|..+.++|.- +.|+++-.+| .+|-+.+.+.. .......| .+-...-.|......|++++ .|+.++ +|
T Consensus 253 ~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 253 GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeee
Confidence 5889999999953 4455555555 67777665432 22233456 66666667744445677755 455544 55
Q ss_pred Ee
Q 016257 316 KL 317 (392)
Q Consensus 316 ~~ 317 (392)
-.
T Consensus 331 l~ 332 (339)
T KOG0280|consen 331 LH 332 (339)
T ss_pred ee
Confidence 43
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=8.6e-13 Score=107.50 Aligned_cols=251 Identities=13% Similarity=0.077 Sum_probs=167.7
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc-ceeeccc---------cCCCCCCCCCeEEEEecCCCC--EEEEE
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAK---------KMPPLQDAGPQKCLSFSVDGS--RFAAG 130 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~---------~~~~~~~~~~v~~~~~s~~~~--~l~~~ 130 (392)
.+-|.++.|...|.+||+|..+|+|.++.-..... ...+... .+..+.-...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45788999999999999999999999997654332 1111111 011223346789999998654 56667
Q ss_pred eCCCcEEEEeCCCCcee-----------------------------------ecccC-CCCcEEEEEecCCCCeEEEEcC
Q 016257 131 GVDGHLRIMHWPSLRII-----------------------------------LDEPK-AHKSVLDMDFSLDSEFLATTST 174 (392)
Q Consensus 131 ~~dg~i~i~d~~~~~~~-----------------------------------~~~~~-~~~~i~~i~~~~~~~~l~~~~~ 174 (392)
+.|.+|++|-+...... +.... |.-.|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 78999999987432110 00111 222688999999999888775
Q ss_pred CCcEEEEECCCCeeeEEE---ecCC----CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee----eee---
Q 016257 175 DGSARIWKTEDGVAWTFL---TRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHK--- 240 (392)
Q Consensus 175 d~~i~vwd~~~~~~~~~~---~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~----~~~--- 240 (392)
|=.|.+|+++-...-..+ ..+. ...|++..|+|..-.. ++-++..|+|++-|++....- +.+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~----f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV----FVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE----EEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 678999998743322222 1111 2357889999987653 566778899999999943210 001
Q ss_pred ---------cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeecccc-----------Cc---ceEEEEE
Q 016257 241 ---------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHL-----------GT---SIALVEF 296 (392)
Q Consensus 241 ---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-----------~~---~i~~~~~ 296 (392)
...-..|..+.|+++|+|+++-.. -+|++||+.. .+++..+ +.|. .. .-..++|
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEE
Confidence 111246889999999999998754 5799999953 3333332 2331 11 2345789
Q ss_pred eeCCCeEEEEeCCCeEEEEEeecC
Q 016257 297 CPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 297 s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
+-++.++++|+..+.++++++..+
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cCCcceEecccccceEEEecCCCC
Confidence 999999999999999999996544
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2e-10 Score=94.92 Aligned_cols=278 Identities=11% Similarity=0.148 Sum_probs=173.8
Q ss_pred ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-
Q 016257 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT- 83 (392)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~- 83 (392)
+..+=++|+|+...+-.+. . .+..+.+..|.+|++...+. .+-...+.+ .+.+.++++++|++|+++..
T Consensus 40 ~nptyl~~~~~~~~LY~v~---~---~~~~ggvaay~iD~~~G~Lt--~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVN---E---PGEEGGVAAYRIDPDDGRLT--FLNRQTLPG--SPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred CCCceEEECCCCCEEEEEE---e---cCCcCcEEEEEEcCCCCeEE--EeeccccCC--CCCeEEEECCCCCEEEEEEcc
Confidence 3445588999875532222 2 22366789999997644442 122222332 34488999999999998875
Q ss_pred CCeEEEEEEeCCccceeecccc--CC----CCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeecc---cCC
Q 016257 84 NGGCKLFEVYGGATDINLLAKK--MP----PLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDE---PKA 153 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~--~~----~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~ 153 (392)
.|.|.++.+.....+....... .. .-+....+....+.|++++|++..- -..|.+|++..++..... ...
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 4789999986643322221100 00 0111223889999999999988753 346999999877653221 122
Q ss_pred CCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCC-eeeEEEec--------CCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257 154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~-~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (392)
...-..|.|+|++++..... -+++|.+|..... .....++. ........+..++||+++| ++.-..
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY----asNRg~ 265 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY----ASNRGH 265 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE----EecCCC
Confidence 33678999999999877655 5889999998763 22222221 1123567899999999732 333345
Q ss_pred cEEEEEeCCCc--ee--eeeecccCCCcEEEEECCCCCEEEEEeCC-CcEEEEecC--CceeeeeeeccccCcceEEEEE
Q 016257 224 ALLAVYDISTW--NK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVK--KMEINHWSKRLHLGTSIALVEF 296 (392)
Q Consensus 224 ~~i~v~d~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~ 296 (392)
..|.+|.+... +. +.....+...-+...++|.|++|+++.++ ..|.+|... +|++........ .....|+.|
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~-~p~Pvcv~f 344 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV-VPEPVCVKF 344 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC-CCCcEEEEE
Confidence 57888876532 22 22233344457889999999999999865 458888654 566554433333 455666766
Q ss_pred e
Q 016257 297 C 297 (392)
Q Consensus 297 s 297 (392)
.
T Consensus 345 ~ 345 (346)
T COG2706 345 L 345 (346)
T ss_pred c
Confidence 4
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=1.6e-12 Score=105.93 Aligned_cols=254 Identities=12% Similarity=0.166 Sum_probs=187.2
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
.+.+...++||.+.+++...-|..+-+++.+.|.+++||--.+...-..-.. .....+++++.+.++...|++|-
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----~~mP~~~~~~~y~~e~~~L~vg~ 87 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----HYMPSPCSAMEYVSESRRLYVGQ 87 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-----hhCCCCceEeeeeccceEEEEEE
Confidence 4555667899999999999999888999999999999997544332111111 11246889999999999999999
Q ss_pred CCCcEEEEeCC----CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257 132 VDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 132 ~dg~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (392)
..|++.-+.+. ....++....|...+..+.|+...+++++.+.|..+.---.+.+..+....... ...++.+.
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d- 164 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFD- 164 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCcee-
Confidence 99999988763 334455566778899999999989999999998876543344443332221100 01111111
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCC--CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDIS--TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 285 (392)
+. +...+...+.|.+-.+. ...++..+.+|...+++++|.|....|++|..|..+.+||+...+-......+
T Consensus 165 -----~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 165 -----AL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred -----eE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 11 24555556666555443 44567788999999999999999999999999999999999887766666678
Q ss_pred ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
| ...|..+...+--+.+.+++.||.|.+|+++..
T Consensus 239 h-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 239 H-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred c-hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 8 888988888888889999999999999999743
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.5e-12 Score=114.45 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=123.0
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEE-EcCCCc--EEEEECC
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGS--ARIWKTE 184 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~--i~vwd~~ 184 (392)
+...+....|+|||+.|+..+.+ ..|+++|+.+++... +....+......|+|||+.|+. .+.++. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 34578889999999998876543 258889998876532 2222233457899999998765 455664 7888887
Q ss_pred CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (392)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 262 (392)
+++.. .+..+ .......+|+||++.++ +++. ....|+++|+.+++... +..........+|+|||++|+..
T Consensus 295 tg~~~-~lt~~-~~~~~~p~wSpDG~~I~----f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 295 TKALT-RITRH-RAIDTEPSWHPDGKSLI----FTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCCeE-ECccC-CCCccceEECCCCCEEE----EEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEE
Confidence 76543 33332 22457789999999732 2333 23567788887766432 22222334457899999998876
Q ss_pred eCC-C--cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEE
Q 016257 263 SKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMIT 315 (392)
Q Consensus 263 ~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw 315 (392)
+.+ + .|.++|+.+++..... .. .......|+|||+.|+..+.+ +.-.+|
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~lt-~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQVLT-ST---RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EecCCceEEEEEECCCCCeEEcc-CC---CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 653 3 4566788887654332 11 122345899999987766543 433333
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=6.1e-12 Score=109.71 Aligned_cols=190 Identities=19% Similarity=0.152 Sum_probs=154.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeecccCC---CCcEEEEEec--------------------CCCCeEEEEcCCCcE
Q 016257 122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLDMDFS--------------------LDSEFLATTSTDGSA 178 (392)
Q Consensus 122 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~--------------------~~~~~l~~~~~d~~i 178 (392)
|-..++|....||.+++|+...++....+... .+...+..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44668999999999999999988776555332 1234444442 123457778889999
Q ss_pred EEEECCCCeeeEEEe-cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCC
Q 016257 179 RIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (392)
Q Consensus 179 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 257 (392)
.+|++..++....+. ..+.+.|.++.++.+-.. +.+++.|..+..|+....+.+.........+.+++++|||+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c-----iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC-----IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCc-----eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 999999999888887 567778999988887665 89999999999999999999988888888999999999999
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-----CCeEEE-EeCCCeEEEEEeecC
Q 016257 258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QRVVLT-ASKEWGAMITKLTVP 320 (392)
Q Consensus 258 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~-~~~dg~i~iw~~~~~ 320 (392)
.+++++ +.|++||+++++.+..+ .+| .++|++++|..+ |.++++ ...+..+.+|.+...
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITF-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEe-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 999987 47999999999999888 689 999999999987 665554 456778889988753
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=2.9e-12 Score=118.57 Aligned_cols=198 Identities=13% Similarity=0.050 Sum_probs=157.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCc----EEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS----VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 189 (392)
.+....+..+...++.++.+..+.+||...+....+....... ..-+.++++.-++++|+.-+.|.+|+....+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 4444566667778999999999999999887776655544331 122334666778999999999999998743333
Q ss_pred EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee-eecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 268 (392)
..+. .|++.+.++.++.||.+ +++.++|.++++|++++.+... ..-+|...+..+.|.|+ .+++++.|.+.
T Consensus 169 ~~l~-GHeG~iF~i~~s~dg~~-----i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 169 IRLK-GHEGSIFSIVTSLDGRY-----IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred ceec-ccCCceEEEEEccCCcE-----EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence 3344 45668999999999998 8999999999999999988765 56678999999999998 99999999999
Q ss_pred EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
++|+....+.. .+ ..|....|+.++..++...+++++.|+.+++|++....
T Consensus 241 rvW~~~~~~l~-~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 241 RVWGVNGTQLE-VY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEecccceeh-hh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 99976554444 33 56768899999999999999999999999999997543
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.47 E-value=1.6e-10 Score=98.48 Aligned_cols=241 Identities=13% Similarity=0.186 Sum_probs=160.3
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCC-eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.... . ..-+.|.++..+++|++++++.....+.+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e-------~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E-------KDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-e-------CCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 5677899999988888999999998 899999988763221 1 134689999999999999999988999999
Q ss_pred eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC----cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
|+++++....-....+-|+.++|||+++++|-+--+| .|+++|+..++....-... ..-.+.+|.|+++++|+
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLYf- 505 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLYF- 505 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEEE-
Confidence 9999988765555566899999999999999876654 6999999887765544322 23467889999997554
Q ss_pred EEEEeC----CccEEEEEeCCCc-ee-eeee----------------------------------cccCCCcEEEEECCC
Q 016257 216 CTVQRG----DKALLAVYDISTW-NK-IGHK----------------------------------RLLRKPASVLSISLD 255 (392)
Q Consensus 216 ~~~~~~----~d~~i~v~d~~~~-~~-~~~~----------------------------------~~~~~~v~~~~~s~~ 255 (392)
+..-+ .|..+.-+....- ++ +..+ ....+.-.+++=-.+
T Consensus 506 -Ls~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~ 584 (668)
T COG4946 506 -LSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKN 584 (668)
T ss_pred -EeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCC
Confidence 33222 2333222221100 00 0000 000011111111122
Q ss_pred CCEEEE--------------EeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 256 GKYLAM--------------GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 256 ~~~l~~--------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
|+.+.. +-..|.+.+||+++.+.... ...++++..|+|++.++. -.||.+++++++..
T Consensus 585 ~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekk 656 (668)
T COG4946 585 GKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKK 656 (668)
T ss_pred CeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEecccC
Confidence 222211 12235566666655443221 457899999999998888 78999999999863
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=1.3e-10 Score=99.77 Aligned_cols=283 Identities=14% Similarity=0.084 Sum_probs=183.0
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~ 82 (392)
.+-|+..++|+|.+.. +++-. ...|.+|.-.... ....+. ...|..+.|+|++++|.+=+
T Consensus 31 ~~~p~~~~~~SP~G~~---l~~~~-------~~~V~~~~g~~~~--------~l~~~~--~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPLGTY---LFSEH-------AAGVECWGGPSKA--------KLVRFR--HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCcchh---eehhh-------ccceEEccccchh--------heeeee--cCCceecccCcccceeeeec
Confidence 3568899999999854 44222 2235666543111 111222 35699999999999999865
Q ss_pred CCC---------------eEEEEEEeCCccceeeccccCCCCCCCCCeE-EEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257 83 TNG---------------GCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (392)
Q Consensus 83 ~d~---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 146 (392)
..+ .+.+||..++.....+.....+ .... -+.|+-+.+++|-. ....+.|+++ +...
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-----~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-----YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-----ccccceeeeeecchhhhhh-ccCeEEEEec-CCcc
Confidence 433 4899999998876655443211 1123 67888888877655 3456999997 3332
Q ss_pred e-ecccCC-CCcEEEEEecCCC--CeEEE-----EcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257 147 I-LDEPKA-HKSVLDMDFSLDS--EFLAT-----TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (392)
Q Consensus 147 ~-~~~~~~-~~~i~~i~~~~~~--~~l~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (392)
. ..+... ...|....|+|.+ ..|+. .+.++.+++|.+..++.+.+-..-. ..-..+.|.+.|.++.+. +
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l-~ 241 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVL-V 241 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEE-E
Confidence 2 111111 2468899999953 34553 4567889999998766554432211 123468899999864332 1
Q ss_pred EEeC-------CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeeccccC
Q 016257 218 VQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLG 288 (392)
Q Consensus 218 ~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~ 288 (392)
.+.. ....++++++........ ....++|...+|.|.++.+++.+ .+-.+.++|++.. +...+. +
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e 315 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----E 315 (561)
T ss_pred EEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----C
Confidence 2211 125688888885444333 25578999999999987766544 7788999999887 333332 4
Q ss_pred cceEEEEEeeCCCeEEEEeCC---CeEEEEEeecC
Q 016257 289 TSIALVEFCPTQRVVLTASKE---WGAMITKLTVP 320 (392)
Q Consensus 289 ~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~ 320 (392)
..=..+.|+|.+++++.++-| |.+.+|+....
T Consensus 316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 556778899999999998876 78889887643
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.4e-11 Score=106.14 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=148.9
Q ss_pred CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec--------------------CCCCEEEEEeC
Q 016257 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--------------------VDGSRFAAGGV 132 (392)
Q Consensus 73 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~~ 132 (392)
|-..++|....||.+++|+...++....+... ..-.+...+..|. .|...++-|..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 45678999999999999999888754444321 1223444444442 12346777888
Q ss_pred CCcEEEEeCCCCceeeccc--CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257 133 DGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (392)
.|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|..+..|+....+.++.+..... .+.+++.+||+.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCC
Confidence 9999999999998876665 4556899999999999999999999999999999988888877655 689999999988
Q ss_pred cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCC-----CCEEEEEe-CCCcEEEEecCC
Q 016257 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLAMGS-KDGDICVVDVKK 275 (392)
Q Consensus 211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~-~dg~i~iwd~~~ 275 (392)
. +++++ ++|++||+++++.+..+.+|.++|++++|--+ |.++.++. .+.-+.+|-...
T Consensus 158 ~-----l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 I-----LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred E-----EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 45444 57999999999999999999999999999876 66766543 455577776544
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.45 E-value=1.2e-10 Score=99.29 Aligned_cols=226 Identities=20% Similarity=0.171 Sum_probs=160.6
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCC----CCCCCCCeEEEE-ecC-CCCEEEEEeCCCcEEEEeC
Q 016257 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP----PLQDAGPQKCLS-FSV-DGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~-~s~-~~~~l~~~~~dg~i~i~d~ 141 (392)
+-..+.||+.++. +..|.|.+||..+......-..-... ......+..-+. |++ +|++++..+ .|...+.+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECC
Confidence 3334568888877 45677999998876543221110110 000111222232 555 788988887 577888776
Q ss_pred CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC-cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
..+-.++ .++.+.|.-..+..+++-++.|..|| .+-++|.++++..+. .... +.|.++..+++|+. ++.+
T Consensus 349 ~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~l-g~I~av~vs~dGK~-----~vva 419 (668)
T COG4946 349 WDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDL-GNIEAVKVSPDGKK-----VVVA 419 (668)
T ss_pred CCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCc-cceEEEEEcCCCcE-----EEEE
Confidence 5554432 34555688888888888899999998 899999988765443 3333 36999999999997 7888
Q ss_pred CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC----cEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG----DICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 296 (392)
.....|-+.|+.+++....-+...+-|+.++|||+++++|-+--+| .|+++|+.+++....... .+.=.+.+|
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaF 496 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAF 496 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCccc
Confidence 8889999999999988766666677899999999999999887665 599999999987665422 344567789
Q ss_pred eeCCCeEEEEe
Q 016257 297 CPTQRVVLTAS 307 (392)
Q Consensus 297 s~~~~~l~~~~ 307 (392)
.||+++|.--+
T Consensus 497 D~d~ryLYfLs 507 (668)
T COG4946 497 DPDGRYLYFLS 507 (668)
T ss_pred CCCCcEEEEEe
Confidence 99999776544
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.2e-10 Score=99.50 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=177.4
Q ss_pred CeeEEEEcCCCCeEEEEeC-----------CCeEEEEEEeCCccceeeccccCCCCCCCCC-eEEEEecCCCCEEEEEeC
Q 016257 65 DPMTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGV 132 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~ 132 (392)
.|.-+.|||+.+||+|-+. ...+.|||+.++.....+.... .... -.-+.||.|++++|.-..
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~-----~~~~~WP~frWS~DdKy~Arm~~ 325 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK-----SPYLKWPIFRWSHDDKYFARMTG 325 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-----CCccccceEEeccCCceeEEecc
Confidence 4888999999999998652 2469999999998766554421 1122 234689999999998776
Q ss_pred CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (392)
..|.||+..+...+-...-....|....|+|.++.||.=+.. ..+.+-.+.+++.+++....+- .-..+.|-.
T Consensus 326 -~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-sDckLhWQk 403 (698)
T KOG2314|consen 326 -NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-SDCKLHWQK 403 (698)
T ss_pred -ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee-eccEEEecc
Confidence 469999876644332222233578999999998888754321 3466666666666555433221 112345555
Q ss_pred CCCcceEEEEE-------EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC---CCcEEEEecC-Cc
Q 016257 208 DGTKPFLFCTV-------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVK-KM 276 (392)
Q Consensus 208 ~~~~~~~~~~~-------~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~-~~ 276 (392)
+|.+ +++-+ +.+.-..+.|+.++........-.....+-..+|-|.|..+++-+. ..++.+|.+. +.
T Consensus 404 ~gdy--LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 404 SGDY--LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred CCcE--EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence 5654 21111 1233345667777765543333344668889999999988776553 3579999887 33
Q ss_pred eeeeeeeccccCcceEEEEEeeCCCeEEEEe---CCCeEEEEEeecCc--------cccceeeeeeeeeeeeeceEE-EE
Q 016257 277 EINHWSKRLHLGTSIALVEFCPTQRVVLTAS---KEWGAMITKLTVPA--------DWKEWQIYSLLLALFLASAVV-FY 344 (392)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~ 344 (392)
.....+.... ....+.+.|+|.|++++.+. ..|.+.++|+.... -+....+...+.+.+....+. .-
T Consensus 482 ~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 482 KKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred Cchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 3333333333 55678899999999887764 46889999987421 111223445555554433221 12
Q ss_pred eeecceeeeeccc
Q 016257 345 IFFENSDSFWNFP 357 (392)
Q Consensus 345 ~~~d~~i~~W~~~ 357 (392)
...|+..++|+++
T Consensus 561 hk~d~GYri~tfq 573 (698)
T KOG2314|consen 561 HKVDNGYRIFTFQ 573 (698)
T ss_pred hccccceEEEEee
Confidence 2347778999886
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4e-10 Score=98.03 Aligned_cols=315 Identities=14% Similarity=0.135 Sum_probs=190.8
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEE----
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS---- 81 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~---- 81 (392)
+.+..++++++ .++++... ..+.|+...... ...+.. ...++++.|+|-|.+|.+=
T Consensus 36 ~~~v~~~S~~G---~lfA~~~~-------~~v~i~~~~~~~--------~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~ 95 (566)
T KOG2315|consen 36 PCNVFAYSNNG---RLFAYSDN-------QVVKVFEIATLK--------VVLCVE--LKKTYDLLFSPKGNYLLTWEPWA 95 (566)
T ss_pred cceeEEEcCCC---cEEEEEcC-------CeEEEEEccCCc--------EEEEec--cceeeeeeecccccccccccccc
Confidence 45566677776 45554333 334555543111 112222 2379999999999988762
Q ss_pred -eC-----CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257 82 -TT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (392)
Q Consensus 82 -~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 155 (392)
.. .-.+++|++++......+.... ... ++..|+.|..+.+- -..+.+.+|++.+.+.+. ..-+..
T Consensus 96 i~~~~~~~~pn~~v~~vet~~~~s~~q~k~------Q~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~ 166 (566)
T KOG2315|consen 96 IYGPKNASNPNVLVYNVETGVQRSQIQKKM------QNG-WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVS 166 (566)
T ss_pred cccCCCCCCCceeeeeeccceehhheehhh------hcC-cccccccchhhhhh-hhcceEEEEecCCcccee-eeeecc
Confidence 11 2347899999844322222211 112 68899998765433 235779999987744332 223455
Q ss_pred cEEEEEecCCCC--eEEE-----EcCCCcEEEEECCCCeeeEEEec--CCCcceEEEEecCCCCcceEEEEEEeCCc---
Q 016257 156 SVLDMDFSLDSE--FLAT-----TSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDK--- 223 (392)
Q Consensus 156 ~i~~i~~~~~~~--~l~~-----~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--- 223 (392)
.|+.+.++|.+. .+++ .+.-+.+++|..........+.. -....--.+.|++-|..+++ +++..-|
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLv--LastdVDktn 244 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLV--LASTDVDKTN 244 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEE--EEEEeecCCC
Confidence 799999998633 3443 34456799998763222111110 01112245788888886433 4444433
Q ss_pred ------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEE--EeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257 224 ------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM--GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (392)
Q Consensus 224 ------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 295 (392)
..++++++........ -...++|.++.|+|+++-+++ |-.-.++.|||++..- +..+. +++=+++-
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~----egpRN~~~ 318 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFP----EGPRNTAF 318 (566)
T ss_pred ccccccceEEEEEecCceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCC----CCCccceE
Confidence 3678888873333322 234789999999999977665 4456789999987544 33332 67788999
Q ss_pred EeeCCCeEEEEeCC---CeEEEEEeecCccccce------eeeeeeeeeeeeceEEE-Eeeecceeeeeccc
Q 016257 296 FCPTQRVVLTASKE---WGAMITKLTVPADWKEW------QIYSLLLALFLASAVVF-YIFFENSDSFWNFP 357 (392)
Q Consensus 296 ~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~d~~i~~W~~~ 357 (392)
|+|.|++|+.+|-+ |.+.+||+...+..... -..+.+++.++..+..+ -.=.|+.++||++.
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999988865 89999999875544322 12345555544433332 11248999999985
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=6.6e-10 Score=89.09 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=152.4
Q ss_pred CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC---CCC-EEEEEeCCCcEEEEeCCCCceeecccCCCC---
Q 016257 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHK--- 155 (392)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--- 155 (392)
..|.+.+|++...+......... ...+.+..+.|.. +|. .++-+..+|.|.++..........+.+-..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQC----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCccceeee----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 45678899988776433111111 1345677788864 555 556677789999997654433322222211
Q ss_pred ---cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee--EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257 156 ---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (392)
Q Consensus 156 ---~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 230 (392)
...++.|++.+..++++..+|.+.+-+....... +.++.| +.......|+.....+ +.+|++|+.+..||
T Consensus 120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E~Wta~f~~~~pnl----vytGgDD~~l~~~D 194 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFEAWTAKFSDKEPNL----VYTGGDDGSLSCWD 194 (339)
T ss_pred hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-ceeeeeeecccCCCce----EEecCCCceEEEEE
Confidence 2457889999999999999999986665444333 245544 4568888888776642 79999999999999
Q ss_pred CCC-ceeee-eecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCcceEEEEEeeCCC-eEEE
Q 016257 231 IST-WNKIG-HKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQR-VVLT 305 (392)
Q Consensus 231 ~~~-~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~ 305 (392)
+|. ++.+. ..+.|...|.++.-+| .+.++++|+.|..|++||.++ ++++... .- .+.|+.+.++|.-. .++.
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v-~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KV-GGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--cc-ccceEEEEecchhhhHHHH
Confidence 993 33332 2566788899998886 578999999999999999995 4444432 22 78999999999533 3334
Q ss_pred EeCCCeEEEEEeecC
Q 016257 306 ASKEWGAMITKLTVP 320 (392)
Q Consensus 306 ~~~dg~i~iw~~~~~ 320 (392)
++.-+..+|-+.+..
T Consensus 272 ~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDK 286 (339)
T ss_pred HHHhcCceEEEeccc
Confidence 444445666666543
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.4e-10 Score=99.26 Aligned_cols=277 Identities=12% Similarity=0.080 Sum_probs=186.1
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----------CC
Q 016257 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG 134 (392)
Q Consensus 66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg 134 (392)
=+-+.|||.|.||++-...| |.+|--++-....++. | ..|.-+.|||+.+||++-+. ..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--------C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45689999999999999888 9999766555443332 2 46889999999999998652 25
Q ss_pred cEEEEeCCCCceeecccCCCC--c-EEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257 135 HLRIMHWPSLRIILDEPKAHK--S-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~--~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
.++|||+.+|.....+....+ . -.-..||.|++++|-... .+|.||+..+...+..-.. .-..|....|+|.+..
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNL 360 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc-CCccccCcccCCCcce
Confidence 799999999988776655322 2 234579999999998776 5699998765433222111 2235888899999774
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe----------CCCcEEEEecCCceeeee
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEINHW 281 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~ 281 (392)
+.+..--+...-..+.+..+.+++.++....+.-.-..+.|-.+|.+|+.-- .-..+.|+.++.......
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 2211111122234577777777777766666555556678888999987632 112466777776654433
Q ss_pred eeccccCcceEEEEEeeCCCeEEEEeC---CCeEEEEEeec-Ccccc---------ceeeeeeeeeeeeeceEEEEeeec
Q 016257 282 SKRLHLGTSIALVEFCPTQRVVLTASK---EWGAMITKLTV-PADWK---------EWQIYSLLLALFLASAVVFYIFFE 348 (392)
Q Consensus 282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d 348 (392)
... ....|...+|-|.|..+++-+. ..++.+|.+.. ....+ ...+.+++.+.++..+.+. +..
T Consensus 441 ~ve--lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~--s~~ 516 (698)
T KOG2314|consen 441 VVE--LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV--SRR 516 (698)
T ss_pred eee--cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec--ccc
Confidence 211 2678999999999997765543 36888998883 22221 2355667777766554443 367
Q ss_pred ceeeeecccc
Q 016257 349 NSDSFWNFPV 358 (392)
Q Consensus 349 ~~i~~W~~~~ 358 (392)
+.+.+.|...
T Consensus 517 g~l~F~D~~~ 526 (698)
T KOG2314|consen 517 GDLEFYDTDY 526 (698)
T ss_pred cceEEEecch
Confidence 8899999885
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=1e-09 Score=108.80 Aligned_cols=249 Identities=11% Similarity=0.063 Sum_probs=162.9
Q ss_pred eeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCC-------CCCCCCeEEEEecCCCCEEEEEe-CCCcE
Q 016257 66 PMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-------LQDAGPQKCLSFSVDGSRFAAGG-VDGHL 136 (392)
Q Consensus 66 v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 136 (392)
...++++++ ++.+++-..++.|+++|..... ........... ...-.....+++.++++.|+++. .++.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 346888875 5566666678889999975432 22221100000 00113458899999888776655 45679
Q ss_pred EEEeCCCCceeecccC----------C-------CCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecC---
Q 016257 137 RIMHWPSLRIILDEPK----------A-------HKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRN--- 195 (392)
Q Consensus 137 ~i~d~~~~~~~~~~~~----------~-------~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--- 195 (392)
+++|..++... .+.+ . -.....++++| ++..+++.+.++.|++||..++... .+...
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 99998765432 1110 0 11346799999 5566677777899999998776542 22110
Q ss_pred -----------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-------------c--------c
Q 016257 196 -----------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------L--------L 243 (392)
Q Consensus 196 -----------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------~--------~ 243 (392)
.-.....++++|++..+ .++...++.|++||++++....... . .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~L----YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKEL----YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEE----EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 01235679999999863 3666778999999998754321100 0 0
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc-----------cCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
-.....++++++|.++++-..+++|++||..++........+. .-.....++++++|+++++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 1123578999999988888889999999998887654432110 01257889999999988888899999
Q ss_pred EEEEeecCc
Q 016257 313 MITKLTVPA 321 (392)
Q Consensus 313 ~iw~~~~~~ 321 (392)
++|++....
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999997654
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.41 E-value=2.2e-09 Score=104.65 Aligned_cols=296 Identities=11% Similarity=0.139 Sum_probs=178.3
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~ 82 (392)
.+.+|.++.+.++...+. +++.++ .|.+...+++.... ..... ..-...|.+++||||+..|+..+
T Consensus 74 ~~~~ivs~~yl~d~~~l~-~~~~~G--------di~~~~~~~~~~~~--~~E~V---G~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLC-IALASG--------DIILVREDPDPDED--EIEIV---GSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCcEEEEEeccCCCcEE-EEECCc--------eEEEEEccCCCCCc--eeEEE---EEEcCcEEEEEECCCcCEEEEEe
Confidence 356899999999886633 333332 24455444322111 11111 22357899999999999999999
Q ss_pred CCCeEEEEEEeC----Cc-------------------cceeeccccC---------C--------CCCCCCCeEEEEecC
Q 016257 83 TNGGCKLFEVYG----GA-------------------TDINLLAKKM---------P--------PLQDAGPQKCLSFSV 122 (392)
Q Consensus 83 ~d~~i~iw~~~~----~~-------------------~~~~~~~~~~---------~--------~~~~~~~v~~~~~s~ 122 (392)
.++++.+....- .. ...++.+... + .+.....-..++|-.
T Consensus 140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG 219 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG 219 (928)
T ss_pred CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC
Confidence 898887754211 00 0001100000 0 011233556789999
Q ss_pred CCCEEEEEeC---C---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC---CCcEEEEECCCCeeeEEEe
Q 016257 123 DGSRFAAGGV---D---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLT 193 (392)
Q Consensus 123 ~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~ 193 (392)
||.++|+.+. . ..++||+-+ |........-.+--..++|.|.|++||+... ...|.+|. ++|.....+.
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~ 297 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT 297 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence 9999998764 2 578999854 5544333322333457899999999998764 34566776 3554444443
Q ss_pred c---CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeeccc-CCCcEEEEECCCC-CEEEEEeCCC
Q 016257 194 R---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL-RKPASVLSISLDG-KYLAMGSKDG 266 (392)
Q Consensus 194 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg 266 (392)
. +....|..+.|++++.. ++..-.+ .|.+|-..+.. ..+.+... ...+..+.|+|.. ..|...+.+|
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~i-----LAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEI-----LAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred cCCCCCCceeeEEEECCCCCE-----EEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence 3 33557999999999995 3333333 39999877643 22222221 2344558999954 4566776666
Q ss_pred cEEEEecC----Cc----------------eeeeee-------------eccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257 267 DICVVDVK----KM----------------EINHWS-------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (392)
Q Consensus 267 ~i~iwd~~----~~----------------~~~~~~-------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 313 (392)
.+..++.. .+ ..+... .......+|.+++|++++..+++-..||.+.
T Consensus 372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 66655432 11 000000 0111267899999999998899999999999
Q ss_pred EEEeecC
Q 016257 314 ITKLTVP 320 (392)
Q Consensus 314 iw~~~~~ 320 (392)
+|.....
T Consensus 452 ~~~~~~~ 458 (928)
T PF04762_consen 452 IYEWDLK 458 (928)
T ss_pred EEEecCC
Confidence 9996544
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=4.2e-12 Score=123.53 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=158.4
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (392)
.++.+-..|.++.-+|...+.++|+.||.+++|....++.+...... ....|+.+.|+.+|+.+..+..||.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------GNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------CcchhhhhhhcccCCceeeeccCCcee
Confidence 34455667888999999999999999999999998877654443321 237889999999999999999999999
Q ss_pred EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc---CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
+|.+. .+.....+.|.....++.|-. ..+++++ .++.+.+||.-......-+..-|.+.++++++-|..+.
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql--- 2350 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL--- 2350 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE---
Confidence 99986 455556667777888888864 5566654 56889999975432222222334557999999999886
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 286 (392)
+++|+.+|.|++||++..+.+..++. +. ...++++|+..|.++||++.....+..+...|
T Consensus 2351 --lisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 --LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred --EEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 89999999999999998776655543 44 56789999999999999999887776665444
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=3.2e-10 Score=97.52 Aligned_cols=244 Identities=14% Similarity=0.107 Sum_probs=170.0
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC--------
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------- 133 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 133 (392)
-.-++..++|||.|.+|++....+ |.+|.-........+. ...|..+.|||++++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR---------HPDVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------cCCceecccCcccceeeeeccCCccChhhc
Confidence 456889999999999999988877 9999987766433332 3478999999999999985533
Q ss_pred -------CcEEEEeCCCCceeecccCCCCc--EE-EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257 134 -------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (392)
Q Consensus 134 -------g~i~i~d~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~ 203 (392)
..+.+||+.++..+..+.....+ .. -+.|+-+.+++|-.. ...++|+++...-....+..-....+...
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeE
Confidence 35999999999988776655544 44 678888888776543 35699999732221111211122357888
Q ss_pred EecCCCCcceEEEE--EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-----------CCCcEEE
Q 016257 204 RFSKDGTKPFLFCT--VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-----------KDGDICV 270 (392)
Q Consensus 204 ~~~~~~~~~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~i 270 (392)
.|+|.+.+.-+++. -..+..+.+++|.+..+..+.........-..+.|.+.|++|++-. ....++|
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 99998665432222 2356778999999997777655554455556789999998876532 1356888
Q ss_pred EecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE--eCCCeEEEEEeec
Q 016257 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA--SKEWGAMITKLTV 319 (392)
Q Consensus 271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~iw~~~~ 319 (392)
+++......... .. .++|...+|.|.++.+++. -.+-.+.+++++.
T Consensus 260 ~~~~e~~i~V~~--~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 260 LRITERSIPVEK--DL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred Eeecccccceec--cc-cccceeeeecccCCceeEEecccccceeeccccc
Confidence 888855444332 22 7899999999998866544 4677777777764
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.3e-09 Score=97.57 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=132.4
Q ss_pred eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe-EEEEeC---CCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (392)
Q Consensus 37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
-+||..|.++.+. ..+... +......|+|||+. ++..+. +..|.++|+.+++... +.. ..
T Consensus 169 ~~l~~~d~dg~~~-------~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~-------~~ 232 (419)
T PRK04043 169 SNIVLADYTLTYQ-------KVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS-------SQ 232 (419)
T ss_pred ceEEEECCCCCce-------eEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec-------CC
Confidence 4577766554321 112222 37789999999985 664443 3468888887765322 111 23
Q ss_pred CCeEEEEecCCCCEEEEEe-CC--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCC
Q 016257 113 GPQKCLSFSVDGSRFAAGG-VD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDG 186 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~ 186 (392)
+......|+|||+.|+... .+ ..|.++|+.+++.. .+..+........|+|||+.|+..+. .+ .|++.|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 4556788999998776543 23 46888888777643 33333333345689999998776653 23 5888888777
Q ss_pred eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc--------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE
Q 016257 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY 258 (392)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 258 (392)
+..+...... ....|+|+|+.+. ++.... ..|.+.|+.++... .+... .......|+|||+.
T Consensus 312 ~~~rlt~~g~----~~~~~SPDG~~Ia----~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 312 SVEQVVFHGK----NNSSVSTYKNYIV----YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred CeEeCccCCC----cCceECCCCCEEE----EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCE
Confidence 6544332211 1248999999743 222221 47899999887653 33322 23346899999998
Q ss_pred EEEEeCCC---cEEEEecCCceeee
Q 016257 259 LAMGSKDG---DICVVDVKKMEINH 280 (392)
Q Consensus 259 l~~~~~dg---~i~iwd~~~~~~~~ 280 (392)
|+..+.++ .+.+.++.......
T Consensus 382 I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 382 IMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred EEEEEccCCcEEEEEEecCCCeeEE
Confidence 87766432 36677776654443
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.9e-11 Score=106.51 Aligned_cols=236 Identities=12% Similarity=0.129 Sum_probs=171.6
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecc--------ccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--------KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
.....|++|+....++|+|+.||.+++..+.+......... -....-.|.+.|..+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45678999999999999999999999998876543222111 0111234889999999999999999999999
Q ss_pred cEEEEeCCCCceeecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE-EEecCCCcceEEEEecCCCCc
Q 016257 135 HLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 211 (392)
.|.+|-+-.+.....+.... +.|.+++|+.||..+.....||.|.+=.++..+... .+.+ .....+.|++|.+.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH
Confidence 99999998887665554433 468999999999999999999999887775443221 1221 13567889999887
Q ss_pred ceEEEEEEeCCccEEEEEeCCCce-------e-e---eeecccCCCcEEEEEC--------CCCCEEEEEeCCCcEEEEe
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWN-------K-I---GHKRLLRKPASVLSIS--------LDGKYLAMGSKDGDICVVD 272 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~-------~-~---~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~iwd 272 (392)
++.+-..|.+.+||....- + + ..+......+..+.|. |+...|+++-.+|.+.|..
T Consensus 171 -----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 171 -----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred -----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 5566667899999976321 1 0 1111122235555553 5778999999999999987
Q ss_pred cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
-.+...+..+.. +-.+..+.|+++|..|+.++.|
T Consensus 246 ~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 246 SENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hcCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence 666555554433 4578999999999999999876
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1e-11 Score=107.65 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=173.3
Q ss_pred CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
.......+.||+..|..++--.+.+.+++++.|.+|++|.++..........-......|..+|.++.|-.+.++++++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 3444557889999999998888888999999999999999976543222111122233588999999999988888764
Q ss_pred CCCcEEEEeCCCCceeecccCC--CCcEEEEEecC--CCCeEEE-EcCCCcEEEEECCCCeeeEEEec----CCCcceEE
Q 016257 132 VDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSL--DSEFLAT-TSTDGSARIWKTEDGVAWTFLTR----NSDEKIEL 202 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~--~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~----~~~~~v~~ 202 (392)
||-|.+||.--++.+.++... ++.+..+..-+ +...++. ++...+|+++|.+..+....+.. ..+..+++
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 789999998766655433221 22333333333 3344444 47789999999998877666642 23356899
Q ss_pred EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE-EecCCceeeee
Q 016257 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV-VDVKKMEINHW 281 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~ 281 (392)
++..+.|++ ++.+-..|.|.+.|.++++.+...+........++ .|..+.|+....|.++.+ |....+.....
T Consensus 882 iaVa~~GN~-----lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 882 IAVADKGNK-----LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred EEeccCcch-----hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence 999999998 78888899999999999998877776665555554 366677887778888888 87666554333
Q ss_pred eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257 282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 317 (392)
.... ..+..-+ -.-|.-|+++...+.+.+|.-
T Consensus 956 ~kpp--pepahfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 956 DKPP--PEPAHFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred cCCC--Ccchhhh--hccCceeEEeccCcEEEEEec
Confidence 2111 1111111 113556777777777777743
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=120.75 Aligned_cols=225 Identities=14% Similarity=0.161 Sum_probs=167.7
Q ss_pred EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEe
Q 016257 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (392)
Q Consensus 126 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (392)
.+.....++...-|.-+.+... ...+-..+.++.=+|...+.++|+.||.+++|.-..+..+..+.......++.+.|
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred cCCcccCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence 3333334444444544332222 22333578888889999999999999999999999888888887655678999999
Q ss_pred cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe---CCCcEEEEecCCceeeeee
Q 016257 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEINHWS 282 (392)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~ 282 (392)
+.+|.. ...+..||.+.+|... .++....+.|....+++.|-. ..+++.+ .++.+.+||.--......+
T Consensus 2260 ~~qGnk-----~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2260 NHQGNK-----FGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred cccCCc-----eeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee
Confidence 999987 6788889999999988 466667777888888887764 5666654 4678999997654444444
Q ss_pred eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQ 362 (392)
Q Consensus 283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~ 362 (392)
...| .+.++++++.|..+.|++||.+|.|++||++..+-.+.|+.. .......++...|.+++|++..-.-+
T Consensus 2332 ~~~H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~-------~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2332 HTCH-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL-------DTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred eeec-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh-------hhhheeeccCcccceEEEEccccchh
Confidence 4788 899999999999999999999999999999876655555441 12334555667999999999877555
Q ss_pred cCCCCc
Q 016257 363 HGGPKI 368 (392)
Q Consensus 363 ~~~p~~ 368 (392)
...|.+
T Consensus 2404 ~~~p~e 2409 (2439)
T KOG1064|consen 2404 HTFPSE 2409 (2439)
T ss_pred hcCchh
Confidence 544543
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=8.3e-09 Score=88.75 Aligned_cols=261 Identities=9% Similarity=-0.006 Sum_probs=152.5
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCceeecccCCC
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------DGHLRIMHWPSLRIILDEPKAH 154 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~ 154 (392)
++|.+.|..+.+....+.... .-..+ +|||++.|+++.. +..|.+||..+.+.+.++.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~--------~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF--------LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC--------CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 789999999887655554322 12334 9999999887765 6889999999999886665432
Q ss_pred C-------cEEEEEecCCCCeEEEEc-C-CCcEEEEECCCCeeeEEEecCCCcceE------EEEecCCCCcceEEEEEE
Q 016257 155 K-------SVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEKIE------LCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 155 ~-------~i~~i~~~~~~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~ 219 (392)
+ ....++++|||++|++.. . +..|.+.|+.+++.+..+..+....+. .+..+.|+... .++
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~----~v~ 173 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA----KVG 173 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE----EEE
Confidence 2 234788999999998776 3 688999999999999888753321111 11222333321 122
Q ss_pred eCCccEEEEEeCCCceeeeeecccCCCc-EEEEECC-CCCEEEEEeCCCcEEEEecCCc-----eeeeeeecc-----cc
Q 016257 220 RGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISL-DGKYLAMGSKDGDICVVDVKKM-----EINHWSKRL-----HL 287 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~-----~~ 287 (392)
...+|.... .+ ...+.....++ ....+++ +|+++++..+ |+|.+.|+... +....+... -.
T Consensus 174 ~d~~g~~~~---~~---~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 174 YGTKGNPKI---KP---TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred ecCCCceEE---ee---eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence 222222110 00 00011100000 0013455 8888888776 99999996443 222221111 01
Q ss_pred CcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeeeeeeeeeee--ece-EEEEee-ecceeee
Q 016257 288 GTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIYSLLLALFL--ASA-VVFYIF-FENSDSF 353 (392)
Q Consensus 288 ~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~d~~i~~ 353 (392)
.+.+.-++++++++.++.... .+.|.++|....+......+...+.+..+ ... .++... .++.|.+
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 344555999999998877432 24688888776654443332222222222 122 333333 5788999
Q ss_pred ecccccccccCC
Q 016257 354 WNFPVARNQHGG 365 (392)
Q Consensus 354 W~~~~~~~~~~~ 365 (392)
.|..+++.+...
T Consensus 327 iD~~t~k~i~~i 338 (352)
T TIGR02658 327 FDAETGKELSSV 338 (352)
T ss_pred EECcCCeEEeee
Confidence 999988766543
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=2.7e-10 Score=93.22 Aligned_cols=283 Identities=10% Similarity=0.126 Sum_probs=171.5
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~ 83 (392)
..|++++++.++..+ +..|-.. +.+.-+.+..+-... ........|...+..+-|+-...++++.+.
T Consensus 68 P~~~~~~~y~~e~~~---L~vg~~n------gtvtefs~sedfnkm----~~~r~~~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRR---LYVGQDN------GTVTEFALSEDFNKM----TFLKDYLAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred CCCceEeeeeccceE---EEEEEec------ceEEEEEhhhhhhhc----chhhhhhhhhcceeeEEecCCceeEEEecc
Confidence 467888888887643 4444332 234444443332221 222345578999999999988889999999
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCceeecccCCCCcEEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMD 161 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~ 161 (392)
|..+.---.+.+.......... ...++.+.-. +...|...|.|..-.+. .-..+.++.+|.+.+.+++
T Consensus 135 dk~~~~hc~e~~~~lg~Y~~~~--------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYNFET--------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK 204 (404)
T ss_pred ccceEEEeeccCCcccceEeec--------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence 9855433334443222211110 1111111111 45556666766665543 4455677788888999999
Q ss_pred ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee--
Q 016257 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-- 239 (392)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-- 239 (392)
|.|..+.|.+|..|..+.+||+-.++-.......+...|..+...+--+. +.+++.|+.|.+||++.......
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn~~r~etpew 279 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-----LISCGEDGGIVVWNMNVKRVETPEW 279 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-----eeeccCCCeEEEEeccceeecCccc
Confidence 99999999999999999999997665554444444457888877776666 79999999999999975332100
Q ss_pred ---------------------------eccc-----CCCcEEEEECCCCCEEEEEeCCCcEEEEe--------cCCceee
Q 016257 240 ---------------------------KRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVD--------VKKMEIN 279 (392)
Q Consensus 240 ---------------------------~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd--------~~~~~~~ 279 (392)
++.| ...+ +...+.+.....+-+..-.+++-| ... ..+
T Consensus 280 l~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~av-c~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~L 357 (404)
T KOG1409|consen 280 LDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAV-CGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPL 357 (404)
T ss_pred cccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhc-CcccccCccccccccceeEEEEecccchhhhcCCC-Ccc
Confidence 0000 1111 111111111111222222344443 222 122
Q ss_pred eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
...... ...|+.+.+..+-.+|++++.|..|+|||++
T Consensus 358 A~phei--~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 358 AIPHEI--KTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred cccccc--ccceeEEEhhhhccceeecCCceEEEEEech
Confidence 222222 3579999998888899999999999999987
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.31 E-value=1.1e-09 Score=86.76 Aligned_cols=239 Identities=11% Similarity=0.043 Sum_probs=154.1
Q ss_pred EEEEcC-----CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 016257 68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 68 ~~~~sp-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~ 141 (392)
.+.|.| ...+||.|+..|...+|...+.+....+... +...|.-+.=..+ ...+..++.|.++++.++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~ 145 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV 145 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecc------cccchhhhhhhcccccceeeccCCcceeEEEE
Confidence 455665 3458999999999999999877643333221 1111111110111 124556678888888887
Q ss_pred CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe-ee-EEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
+-+..........-.+.++++++|++++++.+....|..|.+.... .+ ..........-.+..|+..... +++
T Consensus 146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv 220 (344)
T KOG4532|consen 146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAV 220 (344)
T ss_pred ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEE
Confidence 6443322221111237899999999999999999999999987542 22 2233333444567888887776 799
Q ss_pred eCCccEEEEEeCCCceee-----eeecccCCCcEEEEECCCC--CEEEEEeCCCcEEEEecCCceeeeeeec------cc
Q 016257 220 RGDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSKR------LH 286 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~ 286 (392)
+..||.+.|||++..... .+...|.+.++.+.|++.| .+|+..-.-+.+.+.|+++++..+.+.. .|
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 999999999999975432 2233478899999999866 3455555567899999999875544421 22
Q ss_pred cCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
....|..-.|+.++.-+.+.+++ .+.=|++.
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cccccccccccCCCcccccccch-hhheeecc
Confidence 13447778888887777766665 33334443
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.6e-09 Score=93.15 Aligned_cols=193 Identities=10% Similarity=0.011 Sum_probs=123.0
Q ss_pred CeEEEEecCCCCE-EEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEE-cCC--CcEEEEECCCC
Q 016257 114 PQKCLSFSVDGSR-FAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD--GSARIWKTEDG 186 (392)
Q Consensus 114 ~v~~~~~s~~~~~-l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d--~~i~vwd~~~~ 186 (392)
......|+|||+. ++..+.+ ..|+++|+.+++.... ....+......|+|||+.++.. +.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678999999985 6654433 4689999988876432 2344456677899999877643 333 46888888776
Q ss_pred eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC-
Q 016257 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD- 265 (392)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 265 (392)
+. ..+..... ......|+|||+.+++ .........|++.|+.+++..+.... ... ...|||||++|+..+..
T Consensus 268 ~~-~~LT~~~~-~d~~p~~SPDG~~I~F--~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 268 TL-TQITNYPG-IDVNGNFVEDDKRIVF--VSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred cE-EEcccCCC-ccCccEECCCCCEEEE--EECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCC
Confidence 54 33433222 2345689999997432 11112234788889987766433221 111 24899999998877643
Q ss_pred --------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257 266 --------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT 318 (392)
Q Consensus 266 --------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~ 318 (392)
..|.+.|+.+++...... . .......|+|||+.|+..+.+ +.-.++-++
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 268888998887654432 1 223368899999987766543 444455544
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=1.8e-08 Score=98.30 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=177.7
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-----CCCCCeeEEEEcCCCCeEEE
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-----ESEGDPMTIAVNPSGDDFVC 80 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~~ 80 (392)
++...+|.+.... .+++++... ....+.+-.+.... .......+. ...+.|.++.+-++...++.
T Consensus 23 ~~~~~~~d~~sd~-i~~~~~~~~----~~~~i~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~ 92 (928)
T PF04762_consen 23 PITATAFDSDSDS-IYFVLGPNE----IDYVIELDRFSQDG-----SVEVLASWDAPLPDDPNDKIVSFQYLADSESLCI 92 (928)
T ss_pred ccceEEEecCCCe-EEEEECCCC----cceEEEEEeeccCC-----ceeEEEeccccCCcCCCCcEEEEEeccCCCcEEE
Confidence 5677788877655 445555332 12345555544332 001111221 33578999999999999999
Q ss_pred EeCCCeEEEE----EEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--------------
Q 016257 81 STTNGGCKLF----EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-------------- 142 (392)
Q Consensus 81 ~~~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-------------- 142 (392)
+..+|.|.+. +..... ....+. -...|.+++||||+..|+..+.++++.+.+-.
T Consensus 93 ~~~~Gdi~~~~~~~~~~~~~--~E~VG~------vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 93 ALASGDIILVREDPDPDEDE--IEIVGS------VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EECCceEEEEEccCCCCCce--eEEEEE------EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9999999998 333322 111111 24689999999999999999989888776420
Q ss_pred -C--------Cceeeccc------------C------------CCCcEEEEEecCCCCeEEEEcC---C---CcEEEEEC
Q 016257 143 -S--------LRIILDEP------------K------------AHKSVLDMDFSLDSEFLATTST---D---GSARIWKT 183 (392)
Q Consensus 143 -~--------~~~~~~~~------------~------------~~~~i~~i~~~~~~~~l~~~~~---d---~~i~vwd~ 183 (392)
. |+.-.++. . ....-..|+|-.||+++|+.+- . +.++||+-
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R 244 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR 244 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC
Confidence 0 00000000 0 1123457889999999998764 2 57999996
Q ss_pred CCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC---CccEEEEEeCCCcee---eeeecccCCCcEEEEECCCCC
Q 016257 184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGK 257 (392)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~ 257 (392)
+ |....+.. ...+--.+++|.|.|.. +++.. ....|.+|..+..+. ...+......+..+.|++|+.
T Consensus 245 e-G~L~stSE-~v~gLe~~l~WrPsG~l-----IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~ 317 (928)
T PF04762_consen 245 E-GELQSTSE-PVDGLEGALSWRPSGNL-----IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE 317 (928)
T ss_pred C-ceEEeccc-cCCCccCCccCCCCCCE-----EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence 4 55433333 33334467899999985 23222 245667776543221 111223456789999999999
Q ss_pred EEEEEeCCCcEEEEecCCcee--eeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257 258 YLAMGSKDGDICVVDVKKMEI--NHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT 318 (392)
Q Consensus 258 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 318 (392)
.||....|. |.+|-..+..- .+.+.-.. ...+..+.|+|... .|...+.+|.+..+++.
T Consensus 318 iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 318 ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 999988665 99999888652 22222122 34556699999655 57777776788776654
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=1.9e-08 Score=90.16 Aligned_cols=255 Identities=8% Similarity=-0.033 Sum_probs=155.3
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 152 (392)
++..++.++.++.+..+|..+++...+.... +.+.+ ... .+..++.++.++.++.+|.++++.+.+...
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--------SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--------ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 4667888889999999999888765543221 11111 111 345777788899999999999987665443
Q ss_pred CCCcEE-----EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc---ce-------EEEEecCCCCcceEEEE
Q 016257 153 AHKSVL-----DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---KI-------ELCRFSKDGTKPFLFCT 217 (392)
Q Consensus 153 ~~~~i~-----~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~v-------~~~~~~~~~~~~~~~~~ 217 (392)
....+. +... .+..++.+..++.+..+|.++++.+......... .+ ....+ .+.. +
T Consensus 174 ~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~-----v 244 (377)
T TIGR03300 174 VTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQ-----V 244 (377)
T ss_pred CCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCE-----E
Confidence 222111 1111 1346778888899999999998776543211100 00 01111 1233 5
Q ss_pred EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 297 (392)
+.++.++.+..+|.++++.+-.... .....+. ..+..+++++.||.+..+|..+++.+-...... .........
T Consensus 245 y~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i- 318 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV- 318 (377)
T ss_pred EEEEcCCEEEEEECCCCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE-
Confidence 6667789999999999877644432 1112222 246788888899999999999998764432111 222233333
Q ss_pred eCCCeEEEEeCCCeEEEEEeecCccccceeeee--eeeeeeeeceEEEEeeecceeeee
Q 016257 298 PTQRVVLTASKEWGAMITKLTVPADWKEWQIYS--LLLALFLASAVVFYIFFENSDSFW 354 (392)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~W 354 (392)
.+..|++++.+|.+++++...++..-.+.+.. ...........++.++.||.++.+
T Consensus 319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 45688899999999999987665432222211 111113345567778888887654
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.2e-09 Score=98.63 Aligned_cols=238 Identities=14% Similarity=0.085 Sum_probs=164.5
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCC-----------
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG----------- 75 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~----------- 75 (392)
-.++.|+|.+ ++++|++. .+..+|.. ..+....+..|+..|+.+.|.|-.
T Consensus 18 ~~A~Dw~~~G----LiAygshs---------lV~VVDs~------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 18 RNAADWSPSG----LIAYGSHS---------LVSVVDSR------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred ccccccCccc----eEEEecCc---------eEEEEehh------hhhhhhccccCccceeEEEeccCCCchhccCcccc
Confidence 3467899987 78887773 14444432 334456678899999999998721
Q ss_pred -CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC---CC-CEEEEEeCCCcEEEEeCCCCceeecc
Q 016257 76 -DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDE 150 (392)
Q Consensus 76 -~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 150 (392)
-.||++...|.|.+||.........+. ++..++..++|-+ +. ..|++-....++.+|+..+|+...+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~-------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLS-------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhc-------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 257788889999999998765433332 3567888888866 33 46667677889999999999998877
Q ss_pred cCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCC-------CeeeEEEecCCC-----------c-------------
Q 016257 151 PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSD-----------E------------- 198 (392)
Q Consensus 151 ~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~-------~~~~~~~~~~~~-----------~------------- 198 (392)
...+....++.+.| |.+.+..-+..|.+.+.+.-. ++..+.-..+.+ .
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 77777788899999 666666666667776665421 122111111110 0
Q ss_pred ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC--CEEEEEeCCCcEEEEecCC
Q 016257 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~ 275 (392)
....++|+|.-+. .+.......+.++|++-..++.......+.+.-+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 232 y~a~faf~p~~rn-----~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRN-----ILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHHhhhcChhhhc-----eEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 0113567787665 2333345679999999888887777777777788888875 5699999999999997654
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=1.3e-10 Score=96.93 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=121.1
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeC
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHW 141 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~ 141 (392)
.+..+..+|++++||.+..+....++++.......++.... .-...-+++.|..+......+..- ..+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~----~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS----CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe----ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 44556678899999999888888888887655322221110 112234555555555555554433 44555555
Q ss_pred CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (392)
..+. ...+.+|-..+++++|+||+++|+++..|..|++-....-..+..+..+|.+-|..++.-++.. +++++
T Consensus 140 ~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s 212 (390)
T KOG3914|consen 140 DSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS 212 (390)
T ss_pred cccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence 5433 3456778889999999999999999999999999988877777788777777899999988876 79999
Q ss_pred CccEEEEEeCCCceeeeeec
Q 016257 222 DKALLAVYDISTWNKIGHKR 241 (392)
Q Consensus 222 ~d~~i~v~d~~~~~~~~~~~ 241 (392)
.|+++++||+++++.+..+.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999998875443
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=2.9e-10 Score=91.89 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=162.3
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc-cceeecc----cc-----CCCCCCCCCeEEEEecCCCC--EEEEE
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLA----KK-----MPPLQDAGPQKCLSFSVDGS--RFAAG 130 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~----~~-----~~~~~~~~~v~~~~~s~~~~--~l~~~ 130 (392)
.+.|+++.|...|.+|++|...|+|.+|.-+... +..++.. .. +..++-...|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999865543 2222111 10 11122245688888877543 46666
Q ss_pred eCCCcEEEEeCCCCce-------------------ee--------c---------------c-cCCCCcEEEEEecCCCC
Q 016257 131 GVDGHLRIMHWPSLRI-------------------IL--------D---------------E-PKAHKSVLDMDFSLDSE 167 (392)
Q Consensus 131 ~~dg~i~i~d~~~~~~-------------------~~--------~---------------~-~~~~~~i~~i~~~~~~~ 167 (392)
+.|.+|++|.+..... +. + . ..|.-.|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7899999997643210 00 0 0 11222577899998888
Q ss_pred eEEEEcCCCcEEEEECCCCeeeEE---EecCC----CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee----
Q 016257 168 FLATTSTDGSARIWKTEDGVAWTF---LTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---- 236 (392)
Q Consensus 168 ~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---- 236 (392)
.++++. |=.|.+|+++....... +..+. ...|++..|+|..... +.-++..|.|++-|++....
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~----fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV----FMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce----EEEecCCCcEEehhhhhhhhccCc
Confidence 887764 67899999874322222 22221 1357888999987653 46677789999999984321
Q ss_pred --eee----------ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-eeeeecccc-----------Ccce-
Q 016257 237 --IGH----------KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHL-----------GTSI- 291 (392)
Q Consensus 237 --~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-----------~~~i- 291 (392)
+.. +...-..|..+.|+++|+++++-.. -+|+|||.+..+. +..+ ..|. ...|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi-~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI-PMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee-chHHHHHHHHHhhhhcccee
Confidence 100 1112356888999999999998765 5799999986543 3333 2220 1223
Q ss_pred --EEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 292 --ALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 292 --~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
..+.||-|.+.+++|+..+..-++-..
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeEEEEecCCcccccccccccceeeeccc
Confidence 357888899999999999888888644
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=1.2e-08 Score=101.47 Aligned_cols=209 Identities=13% Similarity=0.054 Sum_probs=136.1
Q ss_pred CCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCC----------CCCCCCCeEEEEecC-CCCEEEEEe
Q 016257 64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMP----------PLQDAGPQKCLSFSV-DGSRFAAGG 131 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~s~-~~~~l~~~~ 131 (392)
..+..++++++++.|+++. .++.|+++|..++.. ..+...... ....-.....++++| ++..+++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 3578999999888766654 456789998866542 222110000 000012346899999 555666667
Q ss_pred CCCcEEEEeCCCCceeecc--------cC------CCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEec--
Q 016257 132 VDGHLRIMHWPSLRIILDE--------PK------AHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTR-- 194 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~--------~~------~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~-- 194 (392)
.++.|++||..++...... .+ .-.....++++|+++.| ++-+.++.|++||++++........
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 7889999998776542110 00 01245679999999854 4556678999999987653211100
Q ss_pred ----------CC--------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-------------cc
Q 016257 195 ----------NS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------LL 243 (392)
Q Consensus 195 ----------~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------~~ 243 (392)
.. -.....++++++|.. .++...++.|++||..++....... ..
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 00 012468899999874 5777889999999998765542211 11
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 278 (392)
-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999888888899999999998765
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=2.3e-08 Score=89.55 Aligned_cols=267 Identities=11% Similarity=0.048 Sum_probs=166.3
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 153 (392)
.+..+++++.++.+..+|..+++...+...... .. .... .++..+++++.++.+..+|.++++.+.+....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~----~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER----LS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC----cc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 356888888899999999988876554432210 00 1122 24668888889999999999999887654432
Q ss_pred CCcEEE-EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257 154 HKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (392)
Q Consensus 154 ~~~i~~-i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~~i~v 228 (392)
..+.+ ... .+..++.++.++.++.+|.++++.+.......... ....... ++ . ++.+..++.+..
T Consensus 135 -~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~-----v~~~~~~g~v~a 204 (377)
T TIGR03300 135 -SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-G-----VLVGFAGGKLVA 204 (377)
T ss_pred -ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-E-----EEEECCCCEEEE
Confidence 22221 111 34567778889999999999998876664332100 0111111 22 2 466777889999
Q ss_pred EeCCCceeeeeecccC----CC---cEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257 229 YDISTWNKIGHKRLLR----KP---ASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 229 ~d~~~~~~~~~~~~~~----~~---v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 299 (392)
+|.++++.+-...... .. ...+.-+| .+..+++++.+|.++.+|.++++..-.... . ....+. .+
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~-~~~~p~--~~ 278 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA---S-SYQGPA--VD 278 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc---C-CccCce--Ee
Confidence 9999887653322110 00 00011111 356788888899999999999987654321 1 122222 24
Q ss_pred CCeEEEEeCCCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecceeeeecccccccccCCCC
Q 016257 300 QRVVLTASKEWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPK 367 (392)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~ 367 (392)
+..++.++.||.+..++...++. .|.... ...........++.+..++.++++|..+|+.+...+.
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~--~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSE--LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 56788888999999999876543 332210 0111123455777778899999999999987765543
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=1.5e-10 Score=103.84 Aligned_cols=249 Identities=11% Similarity=0.074 Sum_probs=167.7
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEeCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN 84 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~~d 84 (392)
.|-.+.|+|...+..-++.. +..+-.+|.+.... .....+.+.+|...|+.+-|+|... .+++++-|
T Consensus 69 ~vad~qws~h~a~~~wiVst-------s~qkaiiwnlA~ss-----~~aIef~lhghsraitd~n~~~q~pdVlatcsvd 136 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVST-------SNQKAIIWNLAKSS-----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD 136 (1081)
T ss_pred hhcceecccCCCCceeEEec-------CcchhhhhhhhcCC-----ccceEEEEecCccceeccccCCCCCcceeecccc
Confidence 46788999988765556632 33334488876433 5567788999999999999999654 78899999
Q ss_pred CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEec
Q 016257 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~ 163 (392)
-.+..||+.+.......... -......++|+-....+.+.+....|++||.+.+. +...+.++...|..++|.
T Consensus 137 t~vh~wd~rSp~~p~ys~~~------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 137 TYVHAWDMRSPHRPFYSTSS------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred ccceeeeccCCCcceeeeec------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence 99999999877543222111 12355778898743344444567789999998765 444556666688888887
Q ss_pred C-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC---------
Q 016257 164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--------- 233 (392)
Q Consensus 164 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~--------- 233 (392)
. ....+.+++.|++|+.||................++..-.+.|-|...+ +.-.-.+..+.+++.+.
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~---~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC---IMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE---eccccCCeeeeeccccchhhhhcccc
Confidence 6 3346888999999999998765433333333455777778888776522 11111222444444332
Q ss_pred -ceeeeeecccCCCcEEEEECCC----------CCEEEEEeCCCcEEEEecCC
Q 016257 234 -WNKIGHKRLLRKPASVLSISLD----------GKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 234 -~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~ 275 (392)
.+++..+.+|...|....|-.. .-.|++-+.|..+++|-+.+
T Consensus 288 ~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3467788888877766655432 23589999999999997754
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.21 E-value=4.2e-08 Score=81.48 Aligned_cols=228 Identities=16% Similarity=0.108 Sum_probs=150.6
Q ss_pred CeeEEEEcC-CCCeEEEEeCCCe-EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----CCcEE
Q 016257 65 DPMTIAVNP-SGDDFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLR 137 (392)
Q Consensus 65 ~v~~~~~sp-~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~ 137 (392)
....++.+| ....++.+-+-|+ ..+||..+++....+....-. -.--.-.||+||++|++.-. .|.|-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-----HFyGHg~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-----HFYGHGVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-----EEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence 345678888 5556777777665 678999888765554332211 11124689999999998643 48899
Q ss_pred EEeCC-CCceeecccCCCCcEEEEEecCCCCeEEEEc------------------CCCcEEEEECCCCeeeEEEec---C
Q 016257 138 IMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTS------------------TDGSARIWKTEDGVAWTFLTR---N 195 (392)
Q Consensus 138 i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------------------~d~~i~vwd~~~~~~~~~~~~---~ 195 (392)
|||.. +.+.+.++..+--.-..+.+.||++.|+++. .+-++...|..+++.+.+... .
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 99998 5566666655554667888999998887763 123566777888887776442 3
Q ss_pred CCcceEEEEecCCCCcceEEEEEEeCCc-------cEEEEEeCCCceeeee-------ecccCCCcEEEEECCCCCEEEE
Q 016257 196 SDEKIELCRFSKDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGH-------KRLLRKPASVLSISLDGKYLAM 261 (392)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d-------~~i~v~d~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~ 261 (392)
+...++.+++.++|.- ++..... -.+.+++... .+.. .....+.+-++++++++.++++
T Consensus 161 ~~lSiRHLa~~~~G~V-----~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTV-----AFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred cccceeeEEecCCCcE-----EEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 4447999999999874 1211111 1233333322 1111 1233567889999999988866
Q ss_pred Ee-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 262 GS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 262 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
.+ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.-
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCCc
Confidence 66 66789999999999887653 3456777776666 55555543
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=3e-09 Score=96.23 Aligned_cols=240 Identities=10% Similarity=0.081 Sum_probs=166.2
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC------------CEEEEEe
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------------SRFAAGG 131 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~ 131 (392)
..-.++.|+|.| +||.|+..- |.+.|..+.+.+..+. .|...|+.+.|.|.. -.|+++.
T Consensus 16 sN~~A~Dw~~~G-LiAygshsl-V~VVDs~s~q~iqsie-------~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHSL-VSVVDSRSLQLIQSIE-------LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred ccccccccCccc-eEEEecCce-EEEEehhhhhhhhccc-------cCccceeEEEeccCCCchhccCccccceeEEecc
Confidence 346678999887 788876554 8888887776544332 266889999998732 1467777
Q ss_pred CCCcEEEEeCCCCceeecccCCCCcEEEEEecC---CC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (392)
..|.|.+||...+..+..+..+.+++..++|-+ +. ..|++-....++.+|+..+|+........+. ...++.+.|
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DP 165 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDP 165 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCC
Confidence 889999999998888877777888999999966 33 4566666678999999999988776655443 677788888
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCCC-------ceeeeeecccCC------------C-------------cEEEEECCC
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRK------------P-------------ASVLSISLD 255 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~------------~-------------v~~~~~s~~ 255 (392)
-...- +...+..|.+.+-+.-. ++..+....|.. . ...++|+|.
T Consensus 166 fd~rh----~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~ 241 (1062)
T KOG1912|consen 166 FDSRH----FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH 241 (1062)
T ss_pred CCcce----EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence 55432 23334455555554321 111111111110 0 113577887
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEeec
Q 016257 256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTV 319 (392)
Q Consensus 256 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~~ 319 (392)
-+.++.......+.++|++-...+..+.. . .+.+.-+.|-|+++ .|++.-.||.+.+|--+.
T Consensus 242 ~rn~lfi~~prellv~dle~~~~l~vvpi-e-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 WRNILFITFPRELLVFDLEYECCLAVVPI-E-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhceEEEEeccceEEEcchhhceeEEEEe-c-cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 76666666677899999998777766632 2 56677778888765 799999999999998764
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.20 E-value=3.8e-08 Score=79.30 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=134.9
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (392)
Q Consensus 69 ~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 148 (392)
++.+++|+.||.. .|..|.|-..++.-... ..+..........=+-++||||+.+||.+...|+|+++|+..... .
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si--~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI--IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-F 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhe--eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-E
Confidence 5667889888875 55556665544331111 010100111223457899999999999999999999999865332 2
Q ss_pred cccCCC-------CcEEEEEecCC------CCeEEEEcCCCcEEEEECCC-----CeeeEE--EecCCCcceEEEEecCC
Q 016257 149 DEPKAH-------KSVLDMDFSLD------SEFLATTSTDGSARIWKTED-----GVAWTF--LTRNSDEKIELCRFSKD 208 (392)
Q Consensus 149 ~~~~~~-------~~i~~i~~~~~------~~~l~~~~~d~~i~vwd~~~-----~~~~~~--~~~~~~~~v~~~~~~~~ 208 (392)
.+.... ..|..+.|.+. ...|++-..+|.++=|-+.. .+.... +..+....|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 222221 35777777542 12466666778877776532 222233 33444557999999999
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC---CCCCEEEEEeCCC------cEEEEecCCceee
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS---LDGKYLAMGSKDG------DICVVDVKKMEIN 279 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg------~i~iwd~~~~~~~ 279 (392)
.+.+ ++.|.....-. ..+.....+++-..- |..+. ++...|+ +..+|.+-+.+..
T Consensus 159 h~LL----lVgG~~~~~~~-----------~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~f 222 (282)
T PF15492_consen 159 HRLL----LVGGCEQNQDG-----------MSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFF 222 (282)
T ss_pred CCEE----EEeccCCCCCc-----------cccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeee
Confidence 8751 23333332100 011112223322221 22111 1222221 1234444333222
Q ss_pred eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee
Q 016257 280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI 328 (392)
Q Consensus 280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 328 (392)
.. .......|..|..||||+.||+...+|.|.+|++........|..
T Consensus 223 s~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 223 SR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11 122267899999999999999999999999999987766666654
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.19 E-value=2.9e-08 Score=79.98 Aligned_cols=227 Identities=12% Similarity=0.092 Sum_probs=127.8
Q ss_pred CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (392)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
.++.|+|-.-..+-.... ..+ ..-+...-.-..++||||+..||.+...|+|+++|+..... ..+.........-.
T Consensus 16 qd~~iEiRsa~Ddf~si~--~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~ 91 (282)
T PF15492_consen 16 QDQCIEIRSAKDDFSSII--GKC-QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLS 91 (282)
T ss_pred eccEEEEEeccCCchhee--EEE-ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccc
Confidence 355666666554332221 111 11222233567899999999999999999999999986542 22222111112234
Q ss_pred CCeEEEEecCCC------CEEEEEeCCCcEEEEeCCCC--c---eee--cccCC-CCcEEEEEecCCCCeEEEEcCCCc-
Q 016257 113 GPQKCLSFSVDG------SRFAAGGVDGHLRIMHWPSL--R---IIL--DEPKA-HKSVLDMDFSLDSEFLATTSTDGS- 177 (392)
Q Consensus 113 ~~v~~~~~s~~~------~~l~~~~~dg~i~i~d~~~~--~---~~~--~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~- 177 (392)
.+|..+.|.+.. ..|++-..+|.++-|-+..+ + ... .+..+ ...|.++.++|..++|++|+....
T Consensus 92 ~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 92 DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ 171 (282)
T ss_pred cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence 677778775521 24666677888887765322 1 111 22222 348999999999898887764322
Q ss_pred ----------EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCc
Q 016257 178 ----------ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA 247 (392)
Q Consensus 178 ----------i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v 247 (392)
+..|.+-++.+ -.-...+.+... ...... ..++.+-+.+...........|
T Consensus 172 ~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~-----~~~~~~---~~~~~~~~~~~fs~~~~~~d~i 232 (282)
T PF15492_consen 172 DGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDI-----TASSKR---RGLLRIPSFKFFSRQGQEQDGI 232 (282)
T ss_pred CccccccccCceEEEEcCCCC-----------cEEEccccCccc-----cccccc---cceeeccceeeeeccccCCCce
Confidence 12222211111 111111111110 011111 1233333222222223345688
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257 248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (392)
Q Consensus 248 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 282 (392)
..|..||||..||+...+|.|.+|++.+.+.....
T Consensus 233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 233 FKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred EEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 99999999999999999999999999987765543
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.19 E-value=2.7e-09 Score=84.24 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=124.2
Q ss_pred eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (392)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~ 86 (392)
|+.+.+.-+. .++.|.......+-|+.+.+..++........++.. +..|+++-.+-+.+--++.++++..||.
T Consensus 39 ~~~~~~v~~~----~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 39 LSKVSLSAEY----ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYADGS 112 (319)
T ss_pred EEEeechhhh----eeecccchhheeeeccceEEEechhhcccCcCceee--eeccCCCCCcccccccCCceEecCCCce
Confidence 5566666543 233333322233444555555554333333333333 3345554444444556678999999999
Q ss_pred EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-----CCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (392)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~ 161 (392)
+.+++.+......... + ..|. .-.+.+....++.+.++. .-+..+.|+++..+........-..|.+++
T Consensus 113 ~~v~s~~~~~~~~~~i----~-~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~ 186 (319)
T KOG4714|consen 113 LAVFSTDKDLALMSRI----P-SIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC 186 (319)
T ss_pred EEEEechHHHhhhhhc----c-cccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhh
Confidence 9999886622111110 0 0011 112233333455555432 123456666654433322222334689999
Q ss_pred ecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 162 FSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 162 ~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
-+|.. ..+++|+.||.+.+||.+.......+...++.++..+-|+|..... ++++++||.+-.||..+
T Consensus 187 ~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 187 SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence 99954 5677888999999999998866665555567789999999975432 79999999999999875
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.18 E-value=9.5e-08 Score=80.11 Aligned_cols=218 Identities=14% Similarity=0.076 Sum_probs=140.7
Q ss_pred eEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec-CCCCEEEEEeCCCcEEEEeCCCC
Q 016257 67 MTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSL 144 (392)
Q Consensus 67 ~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~ 144 (392)
.++.|.+ ++.++++-...+.|+.|+..++...... . .....+++. +++ .|+.+... .+.++|..++
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------~-~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g 70 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------L-PGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTG 70 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------S-SSEEEEEEECTTS-EEEEEETT-CEEEEETTTT
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------c-CCCceEEEEccCC-EEEEEEcC-ceEEEecCCC
Confidence 4678888 5656666667888999988776532211 1 126778887 565 55555544 4566698887
Q ss_pred ceeecccC-----CCCcEEEEEecCCCCeEEEEcCC--------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257 145 RIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 145 ~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
+....... .....+++++.|+|++.++.... |.+..++.. ++....... . .....++|+|+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchh
Confidence 54322221 23378999999999977765533 457777776 444333332 2 25789999999986
Q ss_pred ceEEEEEEeCCccEEEEEeCCCcee----eeee---cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNK----IGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~----~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 284 (392)
+ .++.+..+.|..+++..... ...+ ....+....+++..+|++.++....+.|.++|.+ ++.+..+..
T Consensus 148 l----yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 148 L----YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp E----EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred e----eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 3 35777888899999863221 1112 2212236789999999988887788999999987 777776643
Q ss_pred cccCcceEEEEEe-eCCCeEEEE
Q 016257 285 LHLGTSIALVEFC-PTQRVVLTA 306 (392)
Q Consensus 285 ~~~~~~i~~~~~s-~~~~~l~~~ 306 (392)
. ...+++++|. ++.+.|+..
T Consensus 223 p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 P--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S--SSSEEEEEEESTTSSEEEEE
T ss_pred C--CCCEEEEEEECCCCCEEEEE
Confidence 3 3589999995 565555443
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=7.8e-10 Score=99.36 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=156.8
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC--CEEEEEeCCCcEEEEe
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMH 140 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d 140 (392)
.+.+.++..+|.|+-+|.+++-| +.+.|+...-......... ..-.|-.+.|+|.. .+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-----tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-----CcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 46788999999999999999998 8888887654333222211 12246677888743 3444444556677888
Q ss_pred CCCC---ceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 141 WPSL---RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 141 ~~~~---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
+... ..-..+.+|...|+++.|+|.. ..+++++.|..+..||+++.. ++..+..-+. ....++|+.....
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~p~---- 172 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKDPN---- 172 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-cCceeeecccCcc----
Confidence 7532 2223345566689999999954 578999999999999999764 3444433333 5678999987665
Q ss_pred EEEEeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257 216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 293 (392)
+.+.+..+.|.+||++.+. ++..+++|-..+..++|..- ...+.+.+.|++|++||.............. ..+|+.
T Consensus 173 -vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~ 250 (1081)
T KOG0309|consen 173 -VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWR 250 (1081)
T ss_pred -hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCccee
Confidence 6777888899999999764 55667777777788877642 3467888999999999987643322221222 667888
Q ss_pred EEEeeCCC
Q 016257 294 VEFCPTQR 301 (392)
Q Consensus 294 ~~~s~~~~ 301 (392)
-.+.|-|.
T Consensus 251 ~r~~Pfg~ 258 (1081)
T KOG0309|consen 251 GRYLPFGE 258 (1081)
T ss_pred ccccccCc
Confidence 88888555
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=1e-09 Score=91.83 Aligned_cols=161 Identities=9% Similarity=0.028 Sum_probs=119.5
Q ss_pred EEEEEecCCCCeEEEEcCCCcEEEEECCCCee----eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
...+..++.++++|++..+....+++.+.... ....... ...+++.|..+.....+ .-..++...+.+|...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v--~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLV--ADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEE--EeecCCceeeeeeccc
Confidence 44556788888999888888877777765433 2222111 13445555555554221 4455666777888777
Q ss_pred CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
.+.. ..+.+|-.-++.++|+||+++|+++..|..|++-.....-.+..+..+| ..-|..++.-++ +.|+++|.|+++
T Consensus 141 ~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 141 SGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred ccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-HhheeeeeeccC-ceeeecCCCCcE
Confidence 6433 3556788899999999999999999999999999988877777777889 999999998765 568999999999
Q ss_pred EEEEeecCcccc
Q 016257 313 MITKLTVPADWK 324 (392)
Q Consensus 313 ~iw~~~~~~~~~ 324 (392)
++|++..++.+.
T Consensus 218 r~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 218 RLWDITSGKLLD 229 (390)
T ss_pred EEEecccCCccc
Confidence 999999876655
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=9.6e-10 Score=95.72 Aligned_cols=267 Identities=11% Similarity=0.107 Sum_probs=172.9
Q ss_pred CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC
Q 016257 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (392)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 110 (392)
+..|.++++|.+.+++.... +..+..+++.|+.+|.++.|-.+-++++++ ||.|++||.--+..........
T Consensus 753 ASkDKTVKLWSik~EgD~~~-tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap----- 824 (1034)
T KOG4190|consen 753 ASKDKTVKLWSIKPEGDEIG-TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP----- 824 (1034)
T ss_pred ccCCceEEEEEeccccCccc-cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc-----
Confidence 45688899999998776553 456788899999999999999998888764 6779999987666444332211
Q ss_pred CCCCeEEEEecC--CCCEEEEE-eCCCcEEEEeCCCCceeeccc-----CCCCcEEEEEecCCCCeEEEEcCCCcEEEEE
Q 016257 111 DAGPQKCLSFSV--DGSRFAAG-GVDGHLRIMHWPSLRIILDEP-----KAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (392)
Q Consensus 111 ~~~~v~~~~~s~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd 182 (392)
..+.+..+.--+ +...++.| +...+|+++|.+..+...+.. ....-+.+++..+.|++++.+-.+|.|.+.|
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 122333333333 44445444 678899999998876544332 2334688999999999999999999999999
Q ss_pred CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEE-EeCCCceeeeeecccCCCcEEEEECCCCCEEEE
Q 016257 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV-YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (392)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 261 (392)
.++|+.+..+..-.- ....++- |..+. ++....|..+.+ |-.-.+....+.+....+..-+ -.-|.-|++
T Consensus 905 aR~G~vINswrpmec-dllqlaa-psdq~-----L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~ 975 (1034)
T KOG4190|consen 905 ARNGKVINSWRPMEC-DLLQLAA-PSDQA-----LAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVT 975 (1034)
T ss_pred cCCCceeccCCcccc-hhhhhcC-chhHH-----HHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEE
Confidence 999998887653221 1222222 33332 466666778887 7766554433333322222111 123556677
Q ss_pred EeCCCcEEEEecC-Cce---eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 262 GSKDGDICVVDVK-KME---INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 262 ~~~dg~i~iwd~~-~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
......+.+|--. ... .+..+......+..++++--|-+.-++.|...|.|.+
T Consensus 976 a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 976 AQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 6666667777321 111 1111211222677888998888888888988888875
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=4.6e-08 Score=77.79 Aligned_cols=187 Identities=12% Similarity=0.065 Sum_probs=126.1
Q ss_pred eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeec-c-cCC
Q 016257 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILD-E-PKA 153 (392)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~-~~~ 153 (392)
.+..++.|.++++.+++.+......... .-.+.++.+++|++++++.+....|..|.+... +.+.. . ...
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~-------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ-------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecc-------ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 4556688999999998766432222111 123789999999999999999999999998643 32222 1 122
Q ss_pred CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee----EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
.+.-.+..|+.....+|++..||++.|||++..... ..-..++.+.++.+.|++-|..-+ ++.+..-+.+.+.
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVHVV 279 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEEEE
Confidence 234567889999999999999999999999864322 222345777899999999766433 5666677889999
Q ss_pred eCCCceeeeeecccC--------CCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 230 DISTWNKIGHKRLLR--------KPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 230 d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
|+++.+..+.+...+ ..+....|+.++..+.+.+++ .+.=|++.
T Consensus 280 D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 280 DTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred EcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 999887654433221 235566666666655555543 23444443
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-08 Score=83.05 Aligned_cols=252 Identities=15% Similarity=0.163 Sum_probs=156.9
Q ss_pred CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC------------CCeeEEEE
Q 016257 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAV 71 (392)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~ 71 (392)
...|+++.|...+ ..+++|...|. +.+|.-+... .........|++|. ..|..+.|
T Consensus 26 ad~ItaVefd~tg---~YlatGDkgGR------Vvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w 93 (460)
T COG5170 26 ADKITAVEFDETG---LYLATGDKGGR------VVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW 93 (460)
T ss_pred cceeeEEEecccc---ceEeecCCCce------EEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence 3568899998877 56888876443 5555433211 11122223344543 36888999
Q ss_pred cCCCC--eEEEEeCCCeEEEEEEeCCccc----------------------eeecc--------------ccCCCCCCCC
Q 016257 72 NPSGD--DFVCSTTNGGCKLFEVYGGATD----------------------INLLA--------------KKMPPLQDAG 113 (392)
Q Consensus 72 sp~~~--~l~~~~~d~~i~iw~~~~~~~~----------------------~~~~~--------------~~~~~~~~~~ 113 (392)
..++. .++..+.|.+|++|.+...... ..+.. .......|.-
T Consensus 94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 76543 4555678999999998765210 00000 0001123556
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eecccCCC-----CcEEEEEecCCC-CeEEEEcCCCcEEEEECC
Q 016257 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLDS-EFLATTSTDGSARIWKTE 184 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~ 184 (392)
.+.++.|+.|...++++ .|-.|.+|+++-... +..+..+. .-|++..|+|.. ..+..++..|.|++-|++
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 68899999998888886 478899999864322 22333332 248889999943 456666777999999998
Q ss_pred CCee------eEEEe---------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeeccc-----
Q 016257 185 DGVA------WTFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL----- 243 (392)
Q Consensus 185 ~~~~------~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~----- 243 (392)
.... +.... ..--..|..+.|+++|++ +.+..--++++||.+..+ ++.+...|
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry------IlsRdyltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY------ILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE------EEEeccceEEEEecccccCCceeechHHHHHH
Confidence 4321 11110 011125778999999995 555556789999998643 44444322
Q ss_pred -------CCCc---EEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 244 -------RKPA---SVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 244 -------~~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
...| ..+.||-|.+.+.+|+..+...||-..
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 1222 247889899999999998888888643
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=2.7e-10 Score=104.24 Aligned_cols=218 Identities=15% Similarity=0.146 Sum_probs=156.4
Q ss_pred EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC--c
Q 016257 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--H 135 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~ 135 (392)
.|..|....+|++|+-+.+.|+.|+..|.|+++++.++...... ..|.++|+.+.-+.||..+++.+.-. .
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------NCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-------cccccccccccccCCcceeeeeccccCch
Confidence 57778899999999999999999999999999999998753332 24889999999999999877765433 4
Q ss_pred EEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---CcceEEEEecCCCCc
Q 016257 136 LRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTK 211 (392)
Q Consensus 136 i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 211 (392)
..+|++.+ +..... -..-.++.|+.....-+.|+......+||++++.++.++.... ...-.+..|+|+...
T Consensus 1169 saLW~~~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHHhccccccCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 67898864 222211 1245678888765555566666778999999998877743221 112367889999884
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 291 (392)
++. || .+||++..+.+..+......+ .=.|+|+|..++.-++ |||+++.+.++.... -.-
T Consensus 1245 -----Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----Ldq 1304 (1516)
T KOG1832|consen 1245 -----ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----LDQ 1304 (1516)
T ss_pred -----Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcc----ccc
Confidence 232 33 589999887776655433222 2368999999988765 999999988776542 234
Q ss_pred EEEEEeeCCCeEEEE
Q 016257 292 ALVEFCPTQRVVLTA 306 (392)
Q Consensus 292 ~~~~~s~~~~~l~~~ 306 (392)
..+.|+..|..++..
T Consensus 1305 c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eEEEeccCccchhhh
Confidence 567888888866544
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=6.3e-07 Score=80.72 Aligned_cols=273 Identities=12% Similarity=0.059 Sum_probs=160.5
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeeccc
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 151 (392)
.+..+++++.++.+.-+|..+++...+.........-.......+.-.| ++..++.++.++.++.+|.++|+.+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 3557777788888999998888766554322100000000000001111 35577888889999999999999876554
Q ss_pred CCCCcEEE-EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCccEE
Q 016257 152 KAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKALL 226 (392)
Q Consensus 152 ~~~~~i~~-i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (392)
... .+.+ ... .+..++.++.++.+..+|.++++.+-......... ..+.... ++. ++.+..++.+
T Consensus 148 ~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~------v~~~~~~g~v 217 (394)
T PRK11138 148 VAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG------AIVGGDNGRV 217 (394)
T ss_pred CCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE------EEEEcCCCEE
Confidence 332 2221 112 24567778888999999999999877765331100 0111111 122 4566778889
Q ss_pred EEEeCCCceeeeeecccC----C---CcEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257 227 AVYDISTWNKIGHKRLLR----K---PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 227 ~v~d~~~~~~~~~~~~~~----~---~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 297 (392)
..+|..+++.+-...... . ....+.-+| .+..+++++.+|.+..+|..+++.+-.... . ....+.
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~-~~~~~~-- 291 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY---G-SVNDFA-- 291 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC---C-CccCcE--
Confidence 999998887653322110 0 011111223 355777778899999999999986544321 1 111222
Q ss_pred eCCCeEEEEeCCCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecceeeeecccccccccC
Q 016257 298 PTQRVVLTASKEWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364 (392)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~ 364 (392)
..+..|+.++.+|.+...+...++. .|.... .........+.++.+..+|.+...|..+|+.+..
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVE--LWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcE--EEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 2456777788899988888865532 342211 1111123456677777899999999988876543
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.97 E-value=2.7e-07 Score=77.05 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=133.8
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~ 163 (392)
+|+|..||..+++...+..... ......+. ..+++..+++++.++.++.||..+|+.+.+...... +.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-----GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-----SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-E
T ss_pred CCEEEEEECCCCCEEEEEECCC-----CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-e
Confidence 5677888877776655543211 01111211 223566788888999999999999998765554222 11111 2
Q ss_pred CCCCeEEEEcCCCcEEEEECCCCeeeEEE-ecCCC-c-ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257 164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSD-E-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (392)
Q Consensus 164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~ 240 (392)
.++..+++++.++.++.+|.++++.+... ..... . ..........+.. ++.+..++.|..+|.++++.+-..
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-----LYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-----EEEEETCSEEEEEETTTTEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE-----EEEEeccCcEEEEecCCCcEEEEe
Confidence 23556677778889999999999998874 32211 0 1122222223554 566666899999999999987665
Q ss_pred cccCCC----------cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 241 RLLRKP----------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 241 ~~~~~~----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
...... +..-....++ .++.++.++.+.-+|+.+++..- .... .. +.. ....++..|+.++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~--~~-~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPI--SG-IYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECS--S--ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecC--CC-ccC-CceeeCCEEEEEeCCC
Confidence 543322 1122222344 77777777764444999999663 2222 22 222 1346777888888999
Q ss_pred eEEEEEeecCcc
Q 016257 311 GAMITKLTVPAD 322 (392)
Q Consensus 311 ~i~iw~~~~~~~ 322 (392)
.+..||+.+++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999987653
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=2e-06 Score=72.07 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=116.0
Q ss_pred eeEEEEc-CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC--------CcE
Q 016257 66 PMTIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHL 136 (392)
Q Consensus 66 v~~~~~s-p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i 136 (392)
...+.+. +++ .|+.+...+ +.++|..+++......... ........+.+++.++|++.++.... |.|
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~--~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPD--GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEET--TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccC--CCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 7788888 565 555555666 6666877765322222110 01123567899999999966665433 456
Q ss_pred EEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCee----eEEEecCCC--cceEEEEecCCC
Q 016257 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDG 209 (392)
Q Consensus 137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~ 209 (392)
..++.. ++.. .....-.....|+|+|+++.|+ +-+..+.|..+++..... ...+..... .....+++..+|
T Consensus 118 ~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 118 YRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred EEECCC-CeEE-EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 777766 4432 2333344678999999998765 556778899999863221 222221112 247889999999
Q ss_pred CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEE-CCCCCEEEEEe
Q 016257 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGS 263 (392)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~ 263 (392)
.. .++....+.|.++|.+ ++.+..+......+++++| -++.+.|++.+
T Consensus 196 ~l-----~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NL-----WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -E-----EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CE-----EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 74 3444467899999988 7777777766568999999 46766665543
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.7e-08 Score=83.85 Aligned_cols=247 Identities=11% Similarity=0.054 Sum_probs=165.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEe
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMH 140 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d 140 (392)
|.+.|+.+.-+ ..+++.+++.||.++.|.-..-. ...+.. ....|.+.+.+++.+-++.++.+.+. |..++++|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-GvEfVK---hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-GVEFVK---HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc-ceeehh---hhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 66777776654 45699999999999999754422 111111 11136678888999999999999777 99999999
Q ss_pred CCCCceeec--ccCCCCcEEEEEecCC-CC-eEEE-EcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceE
Q 016257 141 WPSLRIILD--EPKAHKSVLDMDFSLD-SE-FLAT-TSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 141 ~~~~~~~~~--~~~~~~~i~~i~~~~~-~~-~l~~-~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
+++-..+.- +....+.+. +..++. .. .++. .-.++.+.++|-.... +...+..-+..+|..+.+++.+..
T Consensus 83 vEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds--- 158 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS--- 158 (558)
T ss_pred eeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc---
Confidence 987654421 111122222 222332 11 3333 3357899999987554 444455556679999999999886
Q ss_pred EEEEEeCCccEEEEEeCCC------cee---------eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee
Q 016257 215 FCTVQRGDKALLAVYDIST------WNK---------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~------~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 279 (392)
..+....|.|.-|.... .+. +..+.......+++.|+|+|..+.+-+.|.+|++++.+++++.
T Consensus 159 --~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 159 --AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred --eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 67777789999998773 111 1111122456789999999999999999999999999998876
Q ss_pred eeeecc-------------------------------ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 280 HWSKRL-------------------------------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 280 ~~~~~~-------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
+.+... |....-+.+.|...|++|+.++.= .|++.++.+.
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn 307 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN 307 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence 554110 112234567788888999888766 5777777654
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.92 E-value=2.1e-06 Score=82.23 Aligned_cols=241 Identities=10% Similarity=0.089 Sum_probs=151.6
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC-
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW- 141 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~- 141 (392)
.+.|.++.|.-+++.++.+..+|.|.+-|.++..... ... -...|.+++||||++.++..+..+++.+-.-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGN------VDNGISAASWSPDEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--eee------ccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence 4689999999999999999999999998877654321 111 2468999999999999998888777766432
Q ss_pred ---CCCcee-------------------ecccC---------------------CCCcEEEEEecCCCCeEEEEc----C
Q 016257 142 ---PSLRII-------------------LDEPK---------------------AHKSVLDMDFSLDSEFLATTS----T 174 (392)
Q Consensus 142 ---~~~~~~-------------------~~~~~---------------------~~~~i~~i~~~~~~~~l~~~~----~ 174 (392)
-..+.+ ..+.+ -++.=+.|.|--||+++++.. .
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 000000 01110 011123589999999998843 2
Q ss_pred C-CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc---eeeeeecccCCCcEEE
Q 016257 175 D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVL 250 (392)
Q Consensus 175 d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~ 250 (392)
+ +.|++||-+ +.. ..........-.+++|-|.|.. +..+-..+.++.|.+|..+.. ............+..+
T Consensus 220 ~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-chh-hcccCcccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 789999976 332 2222223334578999998875 222344456677888876532 2222223333458999
Q ss_pred EECCCCCEEEE---EeCCCcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257 251 SISLDGKYLAM---GSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT 318 (392)
Q Consensus 251 ~~s~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 318 (392)
+|+.++..||+ ......|++|-..+........ ... .... +.|+|... .|..-..+|...++++.
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-QKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-cccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 99999999998 4455569999988754322111 111 1222 88888533 34444466776666654
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=3.2e-07 Score=76.59 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=133.0
Q ss_pred CCcEEEEeCCCCceeecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257 133 DGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (392)
+|.|..+|.++++.+.+..-.. ...... ..+++..+++++.++.+..||..+++.+........ +.......++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeeecccc
Confidence 6889999999998876654321 222211 233566788888899999999999998877765322 11112222333
Q ss_pred cceEEEEEEeCCccEEEEEeCCCceeeeee-cccC---CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLR---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 286 (392)
++....++.+..+|.++++.+-.. .... ..........++..++++..++.|..+|+++|+.+-......
T Consensus 79 ------v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 79 ------VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ------EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ------cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 344557779999999999887663 2221 111222333347888888889999999999999876553311
Q ss_pred cC--cc------eEEEEEeeCCCeEEEEeCCCe-EEEEEeecCccccceeee-eeeee-eeeeceEEEEeeecceeeeec
Q 016257 287 LG--TS------IALVEFCPTQRVVLTASKEWG-AMITKLTVPADWKEWQIY-SLLLA-LFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 287 ~~--~~------i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~d~~i~~W~ 355 (392)
.. .. +..-....++ .++.++.++. +.+ ++..+.. .|... ..... .......++....++.+..||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~--~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK--LWSKPISGIYSLPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE--EEEECSS-ECECEECCCTEEEEEETTTEEEEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE--EEEecCCCccCCceeeCCEEEEEeCCCEEEEEE
Confidence 01 11 1122222244 6777777775 444 7766552 35222 11222 234555666666799999999
Q ss_pred ccccccc
Q 016257 356 FPVARNQ 362 (392)
Q Consensus 356 ~~~~~~~ 362 (392)
+.+|+.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999865
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=2.3e-08 Score=79.07 Aligned_cols=147 Identities=13% Similarity=0.179 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeee-EEEecCCCcceEEEEecCCCCcceEEEEEEeCC------ccEEEEEeCCCceee
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD------KALLAVYDISTWNKI 237 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------d~~i~v~d~~~~~~~ 237 (392)
.++.++++..||.+.+++.+.-..+ ..+...+.+ -.+.+....++ ++.++. -+..+.|+++..+..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~------~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGN------SILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeeccc------EEecCCcceEeeccceeeecccccccc
Confidence 4567999999999999998752111 111111111 11122222233 122222 234566666644433
Q ss_pred eeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-CCeEEEEeCCCeEEEE
Q 016257 238 GHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-QRVVLTASKEWGAMIT 315 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw 315 (392)
..-......|++++-+|.. ..+++|+.||.+.+||.+....+..+...| +.+|+.+-|+|. +..|+++++||.+--|
T Consensus 173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCcEEEE
Confidence 2222223458899999965 567788899999999999988777777899 999999999994 5699999999999999
Q ss_pred Eeec
Q 016257 316 KLTV 319 (392)
Q Consensus 316 ~~~~ 319 (392)
+-.+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 8773
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=7.6e-07 Score=81.51 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=133.2
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 191 (392)
...+.|++++ ++.|+.|+.+|.|++++.... . .....|... ..+|.++++|+.||+|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3466777775 568999999999999986533 2 223333222 56899999999999999999988887777
Q ss_pred EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
+..+ .++.+++++|+-...-.-.+++|+..| +.++.-+-... ...+....++|.++.|. |+++|-++.+| |+
T Consensus 109 ~df~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 109 YDFK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred EecC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 6644 379999999981110011168888888 87776542211 11344557899999995 77999998888 99
Q ss_pred EEecCCceeeeeeecccc----CcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 270 VVDVKKMEINHWSKRLHL----GTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 270 iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
+||..+.+.+..+...+. ......+.|.++. .|+.|=.| +|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 999999887776654331 2234567887664 56666666 89999888
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=2.4e-06 Score=76.97 Aligned_cols=258 Identities=8% Similarity=-0.041 Sum_probs=150.9
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 152 (392)
++..++.++.++.++.+|.++++...+.... +.+.+ ... .+..++.+..++.+..+|.++|+.+.....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA--------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCC--------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 3557778888999999999988866554321 11111 111 244677788899999999999998765543
Q ss_pred CCCcEE-EEEecC--CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc---c---eEEEEecC--CCCcceEEEEEEeC
Q 016257 153 AHKSVL-DMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---K---IELCRFSK--DGTKPFLFCTVQRG 221 (392)
Q Consensus 153 ~~~~i~-~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~---v~~~~~~~--~~~~~~~~~~~~~~ 221 (392)
...... ...-+| .+..++.++.++.+..+|.++++.+......... . ...+.-+| .+.. ++.++
T Consensus 189 ~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-----vy~~~ 263 (394)
T PRK11138 189 DVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-----VYALA 263 (394)
T ss_pred CCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-----EEEEE
Confidence 211110 000122 2345777788899999999988776544321100 0 01111122 1232 45566
Q ss_pred CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (392)
Q Consensus 222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 301 (392)
.++.+..+|..+++.+-.... .....+. ..+..++.++.+|.+..+|.++++.+-...... .....+... .+.
T Consensus 264 ~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g 336 (394)
T PRK11138 264 YNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNG 336 (394)
T ss_pred cCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECC
Confidence 789999999999876543321 1111222 246678888899999999999987654322111 112222333 245
Q ss_pred eEEEEeCCCeEEEEEeecCccccceeeeee----eeeeeeeceEEEEeeecceeeeec
Q 016257 302 VVLTASKEWGAMITKLTVPADWKEWQIYSL----LLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 302 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
.|+.++.||.+.+.+...++. .|..... ...-......++.++.||.++..+
T Consensus 337 ~l~v~~~~G~l~~ld~~tG~~--~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDGRF--VAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEEeCCCEEEEEECCCCCE--EEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 678889999999988776543 3322111 111123455677777788777655
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=8.5e-06 Score=65.06 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=78.4
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 154 (392)
..+++.|+..+.+.--|..+++...+.... ..+.+-+.- -|++++.|...|.+++.+.++|.+...+....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 347778888888888888887755443321 222222221 46789999999999999999997766554333
Q ss_pred CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 194 (392)
.-=......+++..+..++.|++.+..|.++..++...+.
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 2112234577899999999999999999998888776543
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.86 E-value=6e-06 Score=79.23 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=133.4
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEEC----CC-
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT----ED- 185 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~----~~- 185 (392)
....|.++.|..++..++.+...|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+- -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 3468999999999999999999999999988776543 22233458999999999999998887777655331 11
Q ss_pred ------------------CeeeEEEecC--------------------CCcceEEEEecCCCCcceEEEEEEeCCc-cEE
Q 016257 186 ------------------GVAWTFLTRN--------------------SDEKIELCRFSKDGTKPFLFCTVQRGDK-ALL 226 (392)
Q Consensus 186 ------------------~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i 226 (392)
|+....+.+. ....-.++.|--||++.... .+....+ ..|
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs-~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVS-FVESETGTRKI 224 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEE-EEeccCCceeE
Confidence 1111111100 00122358899999863222 2223334 899
Q ss_pred EEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe---CCCcEEEEecCCcee---eeeeeccccCcceEEEEEeeCC
Q 016257 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 227 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
++||.+ +..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-..... .... ... ..++..++|+.++
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~d-e~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLD-EKEVEELAWNSNS 301 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-ccc-ccchheeeecCCC
Confidence 999988 433322233334456899999999998753 456799998654321 1111 112 4459999999999
Q ss_pred CeEEE---EeCCCeEEEEEeec
Q 016257 301 RVVLT---ASKEWGAMITKLTV 319 (392)
Q Consensus 301 ~~l~~---~~~dg~i~iw~~~~ 319 (392)
..|++ ......|++|.+..
T Consensus 302 diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CceeeeecccccceEEEEEecC
Confidence 98887 44455699998764
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=2.2e-08 Score=82.35 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=109.0
Q ss_pred EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----ceeecccCCC
Q 016257 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAH 154 (392)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~ 154 (392)
++.+.+-.+.+-|++++.. ..+...+.|.++.|...++++..|..+|.|..+|++.. .......-|.
T Consensus 228 fs~G~sqqv~L~nvetg~~---------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred ecccccceeEEEEeecccc---------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence 3344555588888888742 12224578899999998899999999999999999865 2233334566
Q ss_pred CcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee---eEEEecCCCcceE-EEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 155 KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 155 ~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
..|+++..-. ++.+|++.+.+|+|++||++.-++ +.+..+|.+..-. -+-..+.... ++++++|...++|
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiW 373 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIW 373 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEE
Confidence 7888887766 688999999999999999997766 7777666442111 1223333333 6789999999999
Q ss_pred eCCCceeeeeecc
Q 016257 230 DISTWNKIGHKRL 242 (392)
Q Consensus 230 d~~~~~~~~~~~~ 242 (392)
.++.+..+.++..
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999988766654
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=2.3e-08 Score=82.29 Aligned_cols=155 Identities=8% Similarity=0.042 Sum_probs=115.7
Q ss_pred EecCC--CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-----eeeEE
Q 016257 119 SFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----VAWTF 191 (392)
Q Consensus 119 ~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~ 191 (392)
+|+-+ |-. ++.+.+-.+-+-|++++... .....+.|.++.|...++++..|..+|.|..+|++.+ .+...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q--sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ--SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccc--ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 55542 333 44455777888898887543 2335567999999998999999999999999999865 23344
Q ss_pred EecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCCCcEE--EEECCCCCEEEEEeCC
Q 016257 192 LTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASV--LSISLDGKYLAMGSKD 265 (392)
Q Consensus 192 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~--~~~s~~~~~l~~~~~d 265 (392)
+. |+..|+++..-. +++. +++++.+|.|++||++.-++ +.+..+|-..-.- +-..+....+++++.|
T Consensus 295 ly--h~Ssvtslq~Lq~s~q~-----LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 295 LY--HDSSVTSLQILQFSQQK-----LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred EE--cCcchhhhhhhccccce-----EeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 43 455788887766 5555 78999999999999997666 7777777543332 3445667788889999
Q ss_pred CcEEEEecCCceeeeeee
Q 016257 266 GDICVVDVKKMEINHWSK 283 (392)
Q Consensus 266 g~i~iwd~~~~~~~~~~~ 283 (392)
...+||.++.+.++..++
T Consensus 368 cytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eEEEEEecccCceeeccC
Confidence 999999999999887764
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=1e-05 Score=67.58 Aligned_cols=204 Identities=12% Similarity=0.018 Sum_probs=136.2
Q ss_pred CCeEEEEecC-CCCEEEEEeCCCc-EEEEeCCCCceeecccCCCCc--EEEEEecCCCCeEEEEcC-----CCcEEEEEC
Q 016257 113 GPQKCLSFSV-DGSRFAAGGVDGH-LRIMHWPSLRIILDEPKAHKS--VLDMDFSLDSEFLATTST-----DGSARIWKT 183 (392)
Q Consensus 113 ~~v~~~~~s~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~-----d~~i~vwd~ 183 (392)
.....++.+| .+..++.+-.-|+ ..+||.++++....+....+. .-.-.||+||++|++.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3456788899 5666777777665 678999999887666554442 235679999999998643 478999999
Q ss_pred C-CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC----------------CccEEEEEeCCCceeeeeec----c
Q 016257 184 E-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----------------DKALLAVYDISTWNKIGHKR----L 242 (392)
Q Consensus 184 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------~d~~i~v~d~~~~~~~~~~~----~ 242 (392)
+ .-+.+..+..+.- ....+.+.||++.+. ++.++ .+..+...|.++++.+.+.. .
T Consensus 85 ~~~~~ri~E~~s~GI-GPHel~l~pDG~tLv---VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGI-GPHELLLMPDGETLV---VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred cCCcEEEeEecCCCc-ChhhEEEcCCCCEEE---EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 8 4566666665433 356788999997532 23332 23456677788888776643 3
Q ss_pred cCCCcEEEEECCCCCEEEEEeCCCc-------EEEEecCCceeeeeeec-----cccCcceEEEEEeeCCCeEEEEe-CC
Q 016257 243 LRKPASVLSISLDGKYLAMGSKDGD-------ICVVDVKKMEINHWSKR-----LHLGTSIALVEFCPTQRVVLTAS-KE 309 (392)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~-~d 309 (392)
|...++-+++.++|..++..-..|. |-+++... .+..+.. ......+-++++++++.++++.+ .-
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 6678999999999877665443332 34443332 1221110 01156899999999998775554 67
Q ss_pred CeEEEEEeecCcc
Q 016257 310 WGAMITKLTVPAD 322 (392)
Q Consensus 310 g~i~iw~~~~~~~ 322 (392)
|.+.+||.....-
T Consensus 239 g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 239 GRVAVWDAATGRL 251 (305)
T ss_pred CEEEEEECCCCCE
Confidence 8999998876644
No 313
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.81 E-value=1.3e-05 Score=69.16 Aligned_cols=286 Identities=12% Similarity=0.107 Sum_probs=138.2
Q ss_pred cCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEEEEeCCCeEEE
Q 016257 11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKL 89 (392)
Q Consensus 11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~d~~i~i 89 (392)
+|.+++.++. ..+. .++.-++|.++..+... .+|.... .......++|+++.++.......|.-
T Consensus 42 ~ft~dG~kll--F~s~------~dg~~nly~lDL~t~~i-------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 42 CFTDDGRKLL--FASD------FDGNRNLYLLDLATGEI-------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp -B-TTS-EEE--EEE-------TTSS-EEEEEETTT-EE-------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred CcCCCCCEEE--EEec------cCCCcceEEEEcccCEE-------EECccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence 5777876633 2222 25556788888665433 2233322 22335667888888877666667888
Q ss_pred EEEeCCccceeeccccCCCCCCCCCeEEEEec--CCCCEEEEEe----------------------CCCcEEEEeCCCCc
Q 016257 90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAAGG----------------------VDGHLRIMHWPSLR 145 (392)
Q Consensus 90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~----------------------~dg~i~i~d~~~~~ 145 (392)
.|+.+.+....... ....+-...|. .|+.+++-.- ....|.-.|+.+|+
T Consensus 107 vdL~T~e~~~vy~~-------p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 107 VDLDTLEERVVYEV-------PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp EETTT--EEEEEE---------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred EECCcCcEEEEEEC-------CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 88877653222211 12233335553 3565544321 11235556777776
Q ss_pred eeecccCCCCcEEEEEecCCC-CeEEEEcC---CCc-EEEEECCC-CeeeEEEec-CCCcceEEEEecCCCCcceEEEEE
Q 016257 146 IILDEPKAHKSVLDMDFSLDS-EFLATTST---DGS-ARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 146 ~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~---d~~-i~vwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
... +.....-+..+.|+|.. .+|+.|-+ +.. -+||-+++ +.....+.. ...+.+..=-|.|||..+++....
T Consensus 180 ~~~-v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 180 RKV-VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EEE-EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred eeE-EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 543 33344567889999944 45555543 221 25565543 333333322 223456667899999986655444
Q ss_pred EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC----------------cEEEEecCCceeeeee
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG----------------DICVVDVKKMEINHWS 282 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~ 282 (392)
.++.+..|.-+|+.+++....... ....-+..++||++++-=+.|. -|++++++.+......
T Consensus 259 ~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 566677899999998765432222 2344566688999887544432 4667788776643322
Q ss_pred e--------ccccCcceEEEEEeeCCCeEE-EEeCCCeEEEEEeecCc
Q 016257 283 K--------RLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA 321 (392)
Q Consensus 283 ~--------~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 321 (392)
. .++..-.=..+.|+|||++++ ++...|...||-+..+.
T Consensus 337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD 384 (386)
T ss_dssp E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence 1 111011235689999999654 56678888888877654
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=2.8e-08 Score=56.55 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=34.8
Q ss_pred eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE
Q 016257 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (392)
Q Consensus 55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 91 (392)
+...+++|.+.|++++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999999999999999999999999997
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.2e-07 Score=76.56 Aligned_cols=243 Identities=10% Similarity=0.032 Sum_probs=139.4
Q ss_pred EeeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCc
Q 016257 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH 135 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 135 (392)
.+.+|...|..++|||..+ ++..++.+..|+|.|+++......... ...+++++|.-| .++|+.|..+|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--------~~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--------YNQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--------cCCceeeeeccCCcceeEEeccCce
Confidence 4667788999999999877 778889999999999998875544432 368899999875 457888889999
Q ss_pred EEEEeCCCCceeecccCC---CCcEEEEEec------CCCCeEEEEcCCCcEEEEECCC--CeeeEEEecCCCcceEEEE
Q 016257 136 LRIMHWPSLRIILDEPKA---HKSVLDMDFS------LDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCR 204 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~---~~~i~~i~~~------~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~v~~~~ 204 (392)
|.+||++..+-....... ..+|..++.- +.+.+++....+ ...|++.- +.....+.....+...++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 999999865543222221 1245444432 234444444432 45565532 2222333333334555566
Q ss_pred ecCCCCcceEEEEEEeCCc------cEEEE-EeCCCceeeeee-ccc-CCC------cEEEEECCCCCEEE-EEeCCCcE
Q 016257 205 FSKDGTKPFLFCTVQRGDK------ALLAV-YDISTWNKIGHK-RLL-RKP------ASVLSISLDGKYLA-MGSKDGDI 268 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d------~~i~v-~d~~~~~~~~~~-~~~-~~~------v~~~~~s~~~~~l~-~~~~dg~i 268 (392)
..+..++. +++.-.+ ..+-. -|.+.+.++... ..+ +.. -..+--.++.++++ +|...+.+
T Consensus 338 y~~~snh~----l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~l 413 (463)
T KOG1645|consen 338 YHGVSNHL----LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNEL 413 (463)
T ss_pred ecCccceE----EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCccee
Confidence 66554542 1221110 00111 112222222111 111 000 01111234555554 44455789
Q ss_pred EEEecCCceeeeeeeccccCcceEEEEEee-CCC-eEEEEeCCCeEEEEEee
Q 016257 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQR-VVLTASKEWGAMITKLT 318 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~-~l~~~~~dg~i~iw~~~ 318 (392)
.+||..+.+..+.+.. ..+|.+++... ++. +|++-. |..++|++.+
T Consensus 414 il~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 414 ILQDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred EEeccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999999998887643 56888877554 333 555555 5588888765
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.77 E-value=6.8e-06 Score=72.71 Aligned_cols=237 Identities=15% Similarity=0.135 Sum_probs=130.7
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCC----C-------CCCCCeEEEEecCCCCEEEEEe
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP----L-------QDAGPQKCLSFSVDGSRFAAGG 131 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~-------~~~~~v~~~~~s~~~~~l~~~~ 131 (392)
...+....|||+|+.++... ++.|.+.+..++... .+....... . +--+.-..+.||||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 56789999999999999875 567999987665322 111111000 0 0012346789999999988653
Q ss_pred CC-C-----------------------------------cEEEEeCCCCceee-ccc----CCCCcEEEEEecCCCCeEE
Q 016257 132 VD-G-----------------------------------HLRIMHWPSLRIIL-DEP----KAHKSVLDMDFSLDSEFLA 170 (392)
Q Consensus 132 ~d-g-----------------------------------~i~i~d~~~~~~~~-~~~----~~~~~i~~i~~~~~~~~l~ 170 (392)
.| . .+.++|+++++... ... .....+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 22 1 13345555554321 111 1223588899999988444
Q ss_pred EE--cCCC---cEEEEECCCCeeeEEEecCCCcce---EEEEec-CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257 171 TT--STDG---SARIWKTEDGVAWTFLTRNSDEKI---ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (392)
Q Consensus 171 ~~--~~d~---~i~vwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 241 (392)
.. +++. .+.++|..+++............+ ....|. +++...+ . +.....-..|.+++...+... .+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l-~-~s~~~G~~hly~~~~~~~~~~-~lT 276 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL-W-ISERDGYRHLYLYDLDGGKPR-QLT 276 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE-E-EEETTSSEEEEEEETTSSEEE-ESS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE-E-EEEcCCCcEEEEEccccccee-ccc
Confidence 33 3332 367778877655444433333333 245554 6666522 1 222333456777788776644 444
Q ss_pred ccCCCcEE-EEECCCCCEEE-EEeCC----CcEEEEecC-CceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257 242 LLRKPASV-LSISLDGKYLA-MGSKD----GDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (392)
Q Consensus 242 ~~~~~v~~-~~~s~~~~~l~-~~~~d----g~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 307 (392)
.....|+. +.++++++.|+ ++..+ ..|+.-++. .++...... . ...-..+.|||++++++-..
T Consensus 277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~--~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-E--DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-T--SSTTEEEEE-TTSSEEEEEE
T ss_pred cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-C--CCCceEEEECCCCCEEEEEE
Confidence 44556744 67888877665 44432 246666777 555544432 1 22226999999999876543
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.77 E-value=2.4e-05 Score=69.83 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=81.2
Q ss_pred EEEEEecC-CCCeEEEE----cCCCc----EEEEECCCCe--eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257 157 VLDMDFSL-DSEFLATT----STDGS----ARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (392)
Q Consensus 157 i~~i~~~~-~~~~l~~~----~~d~~----i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (392)
..++.|+- +...+.+. +.+|. -.+|++...+ .+.....+....+.+++++|+... ++.|..||.
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-----LvlGC~DgS 282 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-----LVLGCEDGS 282 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-----EEEEecCCe
Confidence 35667766 33444443 33443 3467765443 223333345567999999999998 899999999
Q ss_pred EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 277 (392)
|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999999875433 22334567899999999999999999999999987543
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3.3e-06 Score=78.03 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=130.9
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCC-eEEEEecCCCCEEEEEeCCC-----cEEEEeCCC
Q 016257 70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS 143 (392)
Q Consensus 70 ~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~ 143 (392)
+|++.+..++.|+.+|.|.+.+-.-. ....+.. +... |..+....+..+|++.+.|+ .+++|+++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fqa-------~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQA-------YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-eeehhee-------cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 46788889999999998887763221 1111111 1122 33343333446788777664 489999863
Q ss_pred C---c---ee--eccc---CC--CCcEEEEEecCCCCeEEEEcCCCcEEEEEC---CCCeeeEEEecCCCcceEEEEecC
Q 016257 144 L---R---II--LDEP---KA--HKSVLDMDFSLDSEFLATTSTDGSARIWKT---EDGVAWTFLTRNSDEKIELCRFSK 207 (392)
Q Consensus 144 ~---~---~~--~~~~---~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~---~~~~~~~~~~~~~~~~v~~~~~~~ 207 (392)
. . +. ..+. .. ..++.+++.+.+-+.+|+|-.||.|..+.- +.......+....+++|+.+++..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2 1 22 0111 12 347889999999999999999999998853 222223344445567999999999
Q ss_pred CCCcceEEEEEEeCCccEEEEEeCCCcee-eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257 208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 286 (392)
++... ++ +++ ...|.+|.+....+ ...+..++.++.|.++++....+++++. ..+.+||.+..+....+..+|
T Consensus 182 d~~s~-lF-v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 182 DGKSV-LF-VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred CCcee-EE-EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence 99863 11 232 45689999885442 3446677888999999876654555553 459999998766666554454
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=3e-07 Score=85.13 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=131.8
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 154 (392)
+..++.|+....+..+|+.+.+....... ..+.|.-+.. +++++.+|...|+|.+-|.++.+.+.++..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec-------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 44666777777788888877664332221 1123555544 67899999999999999999999999999999
Q ss_pred CcEEEEEecCCCCeEEEEcC---------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257 155 KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (392)
+.|.++..+ |+.|++++. |..|+|||++..+.+.-+..+.. ..-+.|.|.-... ++..+..|.
T Consensus 218 ~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~----~~V~S~sGq 289 (1118)
T KOG1275|consen 218 GSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTR----LAVTSQSGQ 289 (1118)
T ss_pred cceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccce----EEEEecccc
Confidence 999876665 889998874 56689999998777665554432 3567788864431 577777888
Q ss_pred EEEEeCCCce----eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257 226 LAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (392)
Q Consensus 226 i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 272 (392)
..+-|..+.. .+.........+..+.+|++|..++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8888843221 1233334455699999999999999999999999997
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.74 E-value=1.4e-05 Score=73.89 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=157.6
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCe--EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ--KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 152 (392)
+..++.++.++.++-.|..+++...+........ .....+ ..+... ++..++.++.++.|+-+|.++++.+.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD-RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc-ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4466777788999999998887665543321100 000000 011111 225788888999999999999998766543
Q ss_pred CCCc--EEEEEecC--CCCeEEEEc---------CCCcEEEEECCCCeeeEEEecCCCcc-------------------e
Q 016257 153 AHKS--VLDMDFSL--DSEFLATTS---------TDGSARIWKTEDGVAWTFLTRNSDEK-------------------I 200 (392)
Q Consensus 153 ~~~~--i~~i~~~~--~~~~l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~-------------------v 200 (392)
.... -..+.-+| .+..++.++ .++.+..+|..+++.+-.+....... +
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 3210 01111122 124455554 36789999999998877665421100 0
Q ss_pred -EEEEecCCCCcceEEEEEEeCCc------------------cEEEEEeCCCceeeeeecccCCCc------EEEEEC--
Q 016257 201 -ELCRFSKDGTKPFLFCTVQRGDK------------------ALLAVYDISTWNKIGHKRLLRKPA------SVLSIS-- 253 (392)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~d------------------~~i~v~d~~~~~~~~~~~~~~~~v------~~~~~s-- 253 (392)
...++.+.+.. ++.+..+ +.+.-+|.++++.+-......... ....+.
T Consensus 219 w~~pa~d~~~g~-----V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 219 WASPTYDPKTNL-----VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred cCCeeEeCCCCE-----EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence 12333433343 3444433 379999999998875543211111 011111
Q ss_pred --CCCC---EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE------------------eCCC
Q 016257 254 --LDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA------------------SKEW 310 (392)
Q Consensus 254 --~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~~dg 310 (392)
-+|. .++.++.+|.+...|.++++.+-...... ..++.+| + .++.+ ..+|
T Consensus 294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-----cccccCC-c-eEEEccccccccCcccccCCCCCCCce
Confidence 1333 67888899999999999999776542210 1122222 1 12111 1234
Q ss_pred eEEEEEeecCccccceeeeee-----------e--eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCC
Q 016257 311 GAMITKLTVPADWKEWQIYSL-----------L--LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQ 376 (392)
Q Consensus 311 ~i~iw~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~ 376 (392)
.+...|+..++ ..|+.... . .........++.++.|+.++..|..+|+.+-..+...++...|.
T Consensus 367 ~l~AlD~~tG~--~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~ 443 (488)
T cd00216 367 GLAALDPKTGK--VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPM 443 (488)
T ss_pred EEEEEeCCCCc--EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCE
Confidence 44444443332 23322211 0 11223456777778899999999999998877666555655565
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=4.1e-08 Score=55.87 Aligned_cols=39 Identities=33% Similarity=0.360 Sum_probs=36.3
Q ss_pred ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (392)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 272 (392)
++++..+..|...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.71 E-value=1.1e-06 Score=78.04 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=82.9
Q ss_pred CCeeEEEEcC-CCCeEEEE----eCCCe----EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 64 GDPMTIAVNP-SGDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 64 ~~v~~~~~sp-~~~~l~~~----~~d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
..+.++.||- +...+.+. +.+|. -.+|++...+.. .. ....+.....+.+++++|+.+.|+.|+.||
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rv---svtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RV---SVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EE---EEEEEecCCcceEEecCcccceEEEEecCC
Confidence 4456777775 33344443 23343 346777655422 11 122234667999999999999999999999
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~ 188 (392)
+|.+||...+.... ....-..+.++|+|+|..+++|+..|.+.+||+.-...
T Consensus 282 SiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 282 SIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred eEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 99999987654332 22333578899999999999999999999999865433
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.67 E-value=5.6e-05 Score=64.03 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=144.9
Q ss_pred eeEEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--CC
Q 016257 66 PMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VD 133 (392)
Q Consensus 66 v~~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 133 (392)
.-.+..+|+++.+++++ +.-.|.+||..+.....++.....+..........++++.|++++++.. -.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 33467899999888653 3446999999888765554433221111223445678999999888754 34
Q ss_pred CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCeeeEEEe---cCCCcc-eEEEEecCC
Q 016257 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLT---RNSDEK-IELCRFSKD 208 (392)
Q Consensus 134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~---~~~~~~-v~~~~~~~~ 208 (392)
-.|.|.|++..+.+.++... .+..+--++. +-+.+-+.||++.-..+. .|+...+.. .....+ +..-++...
T Consensus 118 ~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred CeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 67999999988876544322 2222222222 447777889999988887 455543221 111111 223334444
Q ss_pred CCcceEEEEEEeCCccEEEEEeCCCceee--eeecc----------cCCCcEEEEECCCCCEEEEEeC---CC-------
Q 016257 209 GTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRL----------LRKPASVLSISLDGKYLAMGSK---DG------- 266 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~s~~~~~l~~~~~---dg------- 266 (392)
+.. ++--+..|.|+--|+...... ..... ..+.-.-+++++..+.|++.-. ++
T Consensus 195 ~~~-----~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 GGR-----LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTE-----EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCe-----EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 433 344567788888887654321 11110 0123345788876666655322 11
Q ss_pred cEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW 323 (392)
Q Consensus 267 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~ 323 (392)
.|.++|+.+++.+..+.. ..++.++..+.+.+ +|++.+ .++.+.+||..+++..
T Consensus 270 eVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 388889999999888754 34788999999877 665554 5789999999876543
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.67 E-value=8.5e-07 Score=82.28 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=130.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEE
Q 016257 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (392)
Q Consensus 123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~ 202 (392)
++..++-|+....+..+|+++.+......-....|.-|. .+++.+.+|...|+|.+-|.++.+.++++..|.+ .+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccc-ceee
Confidence 345677777777888889988776554433333455444 4578999999999999999999999999988765 4544
Q ss_pred EEecCCCCcceEEEEEEeC---------CccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEe
Q 016257 203 CRFSKDGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVD 272 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd 272 (392)
|+-.|+. +++++ .|..|+|||+|..+.+..+..+.++ .-+.|+|.- ..+++.+..|...+-|
T Consensus 223 --fDv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 223 --FDVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred --eeccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 4555664 44444 3667999999988776655554443 557788863 5678888899999999
Q ss_pred cCC---ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257 273 VKK---MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 273 ~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 316 (392)
..+ ...-....... ...+..+.++++++.|+.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 433 21111111122 45599999999999999999999999998
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=8.8e-07 Score=81.59 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=87.4
Q ss_pred CCCeeEEEEcCCCCeEEEEe----CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257 63 EGDPMTIAVNPSGDDFVCST----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 138 (392)
.+..+-..|+|...++++++ ..|.|.||- ++++...... -.-.+.+++|+|..-.|+.|-.-|.+.+
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P~hatSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YPVHATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cceehhhhccChHHHHHhhccccceeEE
Confidence 34455578999999998876 457788884 4444222211 1224577999999888999999999999
Q ss_pred EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC
Q 016257 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (392)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~ 184 (392)
|...+.+.......|..+|..+.||++|..++++..-|.+.+|...
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9988776665566677799999999999999999999999999875
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=9e-06 Score=75.30 Aligned_cols=209 Identities=11% Similarity=0.083 Sum_probs=127.3
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCC-eeEEEEcCCCCeEEEEeCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTN 84 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~~~~~d 84 (392)
.|.| |++.+ ..++.|+..|. |+.++.. ......++.++.. |..+....+.++|++.+.|
T Consensus 27 ~isc--~~s~~---~~vvigt~~G~--------V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed 86 (933)
T KOG2114|consen 27 AISC--CSSST---GSVVIGTADGR--------VVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGED 86 (933)
T ss_pred ceeE--EcCCC---ceEEEeecccc--------EEEeccc-------ceeeehheecchhhhhHhhcccCceEEEEEeec
Confidence 4444 45554 34666666543 6666521 1222456666666 4444444444677776665
Q ss_pred C-----eEEEEEEeCCccce--eec----cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC----CCceeec
Q 016257 85 G-----GCKLFEVYGGATDI--NLL----AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP----SLRIILD 149 (392)
Q Consensus 85 ~-----~i~iw~~~~~~~~~--~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~ 149 (392)
+ .++||+++..+... ... ....+......++.+++.+.+-+.+|+|-.+|.|..+.-+ .+....-
T Consensus 87 ~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 87 EQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence 4 48999997653211 111 1111111245788999999999999999999999988532 1111222
Q ss_pred ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 150 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
......+|+.+++..+++.++.+..-..|.+|.+....+......+++..+.|-.+++.... +.++....+.+|
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q------fIca~~e~l~fY 240 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ------FICAGSEFLYFY 240 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc------EEEecCceEEEE
Confidence 23344589999999888773333334679999998555445545566778889999887664 333445679999
Q ss_pred eCCCceeeeee
Q 016257 230 DISTWNKIGHK 240 (392)
Q Consensus 230 d~~~~~~~~~~ 240 (392)
|....++-..+
T Consensus 241 ~sd~~~~cfaf 251 (933)
T KOG2114|consen 241 DSDGRGPCFAF 251 (933)
T ss_pred cCCCcceeeee
Confidence 98755444333
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.60 E-value=4.4e-05 Score=68.64 Aligned_cols=225 Identities=12% Similarity=0.143 Sum_probs=119.4
Q ss_pred EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (392)
Q Consensus 57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (392)
..+....-.+..+.++|+|+++++ +.+|.-.|+.....+. . ..+.-....|.+.+ .+|+-..+++|
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--k----------~~G~g~~~vw~~~n-~yAv~~~~~~I 91 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--K----------AFGSGLSFVWSSRN-RYAVLESSSTI 91 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--E----------EEEE-SEEEE-TSS-EEEEE-TTS-E
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--c----------ccCceeEEEEecCc-cEEEEECCCeE
Confidence 344445567899999999999988 5677677776222211 1 11344678898855 56666668889
Q ss_pred EEE-eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 137 RIM-HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 137 ~i~-d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
.++ +++... ...+... ..+..|-. |.+|...+. +.|.+||.++++.++.+... +|..+.|++++..
T Consensus 92 ~I~kn~~~~~-~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~---- 158 (443)
T PF04053_consen 92 KIYKNFKNEV-VKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSDDGEL---- 158 (443)
T ss_dssp EEEETTEE-T-T-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSE----
T ss_pred EEEEcCcccc-ceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEECCCCE----
Confidence 996 432221 1112111 12333322 777777765 48999999999999988633 4899999999996
Q ss_pred EEEEeCCccEEEEEeCCCc-----------eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257 216 CTVQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 284 (392)
++..+ +..+.+++.+.. ............|.+..|..+ .++-.+.. .|+. +-.|+.-...
T Consensus 159 -val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~-- 229 (443)
T PF04053_consen 159 -VALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA-- 229 (443)
T ss_dssp -EEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE--
T ss_pred -EEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE--
Confidence 33333 345666665432 012222222457788888766 44444433 6666 4555543322
Q ss_pred cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
|...++.-+...++...+.....|+.+..+.++
T Consensus 230 -~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 230 -HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred -EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 225678888888877788889999999888776
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.3e-06 Score=71.32 Aligned_cols=229 Identities=11% Similarity=0.003 Sum_probs=130.7
Q ss_pred EEEEeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
++..+..+.+...-+..+...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|.-+..+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~-- 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV-- 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence 55555544444443444555899999999776 7888999999999999999888888765 379999999998762
Q ss_pred EEEEEeCCccEEEEEeCCCceee-eeecc--cCCCcEEEE------ECCCCCEEEEEeCCCcEEEEecCCc--eeeeeee
Q 016257 215 FCTVQRGDKALLAVYDISTWNKI-GHKRL--LRKPASVLS------ISLDGKYLAMGSKDGDICVVDVKKM--EINHWSK 283 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~-~~~~~--~~~~v~~~~------~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 283 (392)
+..|-..|.|.+||++..+-. ..+.. ...+|..++ ..+.|.+++....+ +..|++... .......
T Consensus 251 --IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 --IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred --eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence 678888999999999975432 11111 123343332 23345555555543 566765432 2222222
Q ss_pred ccccCcceEEEEEeeCCCeEEEE-eCC------CeEEEEEeecCccccceeeeeee-----------eee---eeeceEE
Q 016257 284 RLHLGTSIALVEFCPTQRVVLTA-SKE------WGAMITKLTVPADWKEWQIYSLL-----------LAL---FLASAVV 342 (392)
Q Consensus 284 ~~~~~~~i~~~~~s~~~~~l~~~-~~d------g~i~iw~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~ 342 (392)
... .+...++...+-.+.++.. -.+ ..+-. ........+++...... ... .-....+
T Consensus 327 le~-pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~-~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv 404 (463)
T KOG1645|consen 327 LEP-PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILG-RIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV 404 (463)
T ss_pred cCC-CcceeeeeecCccceEEEEecCCCCCccceeeee-eeccccCceeeeecccccCCcccccccccceeccccccEEE
Confidence 222 4555566665544444333 221 01111 11111111222111100 000 0012233
Q ss_pred EEeeecceeeeecccccccccCCCCcccccCC
Q 016257 343 FYIFFENSDSFWNFPVARNQHGGPKIESILRD 374 (392)
Q Consensus 343 ~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~ 374 (392)
.++..-+.+.+||....+-++..|..++++..
T Consensus 405 ~~gd~tn~lil~D~~s~evvQ~l~~~epv~Di 436 (463)
T KOG1645|consen 405 VVGDSTNELILQDPHSFEVVQTLALSEPVLDI 436 (463)
T ss_pred EecCCcceeEEeccchhheeeecccCcceeec
Confidence 33334567999999999988887877666653
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.57 E-value=2.1e-05 Score=71.91 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=113.4
Q ss_pred EcCCCCeEEE-EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC----cEEEEeCCCCc
Q 016257 71 VNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLR 145 (392)
Q Consensus 71 ~sp~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~ 145 (392)
++|||+.+.. .-..+.+.+.|.++.+...+... .+....+.++++|+++++.+.+. ++...+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe--------CCCcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence 3445554432 22345566677666554444332 22446788999999998876422 23333222211
Q ss_pred eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-----CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (392)
Q Consensus 146 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (392)
.+..+.- ..+ -++.++|++...+ ++.|.+.|.++ .+.+..+..+ .....+.++|||+++ ++++
T Consensus 272 ~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkyl----yVan 339 (635)
T PRK02888 272 WVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYF----IANG 339 (635)
T ss_pred eEEEEch--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEE----EEeC
Confidence 1110000 000 0334577766653 57899999988 4555555543 357899999999973 4677
Q ss_pred CCccEEEEEeCCCcee------------eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257 221 GDKALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 221 ~~d~~i~v~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 275 (392)
..+..+.|+|+.+.+. ..+... ...-...+|.++|+...+-.-|..|-.||+.+
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7799999999987553 222222 23334678999998888888999999999876
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=7.5e-08 Score=88.80 Aligned_cols=186 Identities=17% Similarity=0.198 Sum_probs=136.0
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC--cEEEEECCC-Ce
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTED-GV 187 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~-~~ 187 (392)
+....+|++|+-+.+.|++|+..|.|+++++.+|........|...|+.+.-+.||..+++.+.-. -..+|++.. +.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 567789999999999999999999999999999998888888888999999999998877765433 367999864 33
Q ss_pred eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc----cCCCcEEEEECCCCCEEEEEe
Q 016257 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGS 263 (392)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~ 263 (392)
..+++. .-.++.|+..... -+.|.......+||+.++.++.++-. ....-++..|+|+..+++
T Consensus 1180 ~~Hsf~-----ed~~vkFsn~~q~-----r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1180 PRHSFD-----EDKAVKFSNSLQF-----RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred cccccc-----ccceeehhhhHHH-----HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 334433 3467888877543 35555556789999999877655321 123346789999988876
Q ss_pred CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 264 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
.|| .+||++..+.++.+.+. . .--.=.|+|.|.-++.-+ .|||+++
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHH
Confidence 355 38999988766655322 1 112235999999888766 4788764
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.5e-05 Score=73.32 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=124.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
.+.++|++++ ++.|+.|..+|.|++++....- ... +.|... ..+|.++++++.||+|.|-.+-
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~--------~~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTN--------FDHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccc--------cccccc------ccCCceEEEecCCCcEEEeecc
Confidence 4567788885 5699999999999999876542 111 112222 5689999999999999999988
Q ss_pred CCceeecccCCCCcEEEEEecCC-----CCeEEEEcCCCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257 143 SLRIILDEPKAHKSVLDMDFSLD-----SEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (392)
Q Consensus 143 ~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (392)
+.+...+ ...+.++.+++++|+ .+.+++|+.-| +.++.-+- +...........++|.++.|.-+ .
T Consensus 102 ~~~~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--l----- 172 (846)
T KOG2066|consen 102 TDDEITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--L----- 172 (846)
T ss_pred CCcccee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--E-----
Confidence 7766533 344568999999997 56799999888 77775331 11111223334568999999754 2
Q ss_pred EEEeCCccEEEEEeCCCceeeeeecccCCCc------EEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPA------SVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
++-++++| |++||+.+.+.+..+......+ ..+.|.++ ..|+.|-.| +|+|..++
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence 44555554 9999999888776655433333 34677655 455666554 58888887
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=1.2e-05 Score=74.41 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=77.1
Q ss_pred eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 016257 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (392)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i 87 (392)
+-.+|+|..+-+++......+ .+.+.||.=. .. |....+. .-.+++++|+|..-.|+.|..-|.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er-----~GSVtIfadt---GE----Pqr~Vt~---P~hatSLCWHpe~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPER-----GGSVTIFADT---GE----PQRDVTY---PVHATSLCWHPEEFVLAQGWEMGVS 83 (1416)
T ss_pred cccccCCCCceeEEEEecCCC-----CceEEEEecC---CC----CCccccc---ceehhhhccChHHHHHhhcccccee
Confidence 346899977543333333333 3446666422 11 1111122 2236679999998889999999999
Q ss_pred EEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
.+|...+.+.. .....|..+|..+.||++|..++++..-|.+.+|...
T Consensus 84 ~v~~~~~~e~h-------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 84 DVQKTNTTETH-------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEEecCCceee-------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99987765421 2223488899999999999999999999999999765
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.51 E-value=3.5e-05 Score=70.55 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=112.6
Q ss_pred CCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEE-------------------ecCCCCcceEEEEEEeCCcc
Q 016257 165 DSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCR-------------------FSKDGTKPFLFCTVQRGDKA 224 (392)
Q Consensus 165 ~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~~~~~~~~~~~~d~ 224 (392)
||++|+.-.. +..|...+++..++.+.+..+....+..++ +.|||+.+ .......+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l----~~~~ey~~ 215 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDL----DDPKKYRS 215 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEe----ecccceeE
Confidence 6778877663 556777777766665544433222233333 34455431 12344557
Q ss_pred EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC----------------------------------------
Q 016257 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---------------------------------------- 264 (392)
Q Consensus 225 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------------------------------- 264 (392)
.+.+.|..+.+...+.... .....++++|+|+++++.+.
T Consensus 216 ~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~ 294 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG 294 (635)
T ss_pred EEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC
Confidence 7888888877666555442 34456788888888877751
Q ss_pred CCcEEEEecCC-----ceeeeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCcccc------------ce
Q 016257 265 DGDICVVDVKK-----MEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPADWK------------EW 326 (392)
Q Consensus 265 dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~------------~~ 326 (392)
+++|.+.|..+ .+....+.. ......+.++|||+++++++ .++++.|.|+......- ..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 24577788777 345554433 55788999999999877665 48999999998654311 01
Q ss_pred eeeeeeeeeeee--ceEEEEeeecceeeeecccc
Q 016257 327 QIYSLLLALFLA--SAVVFYIFFENSDSFWNFPV 358 (392)
Q Consensus 327 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~W~~~~ 358 (392)
.+-..+...... .....+.+.|..|-.|++..
T Consensus 372 evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 111111111111 22334456799999999987
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.49 E-value=3.8e-05 Score=68.78 Aligned_cols=190 Identities=19% Similarity=0.182 Sum_probs=115.6
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEe---CC-CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CC
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCST---TN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD 133 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~---~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 133 (392)
+..-...+..-+|+|+++.++... .. ..+.++++.+++...... ..+.-...+|+|||++|+... .|
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------cCCccCCccCCCCCCEEEEEECCC
Confidence 333456778889999998766542 23 468899998876433332 223456678999999877654 45
Q ss_pred Cc--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257 134 GH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (392)
Q Consensus 134 g~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (392)
|. |+++|+..++.. .+....+.-..-.|+|||++++..+ ..|. |.+.+.+.+.. ..+...... -....|+||
T Consensus 260 g~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCC
Confidence 54 666677666533 3333333334678999999887665 4444 66666655544 333333222 227789999
Q ss_pred CCcceEEEEEEeCCccE--EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC
Q 016257 209 GTKPFLFCTVQRGDKAL--LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK 264 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 264 (392)
|+++. +....+|. |.+.|+.++...+.+ ..........|.|+|+.+...+.
T Consensus 337 G~~i~----~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 337 GDKIV----FESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCEEE----EEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 99732 22222343 777777665532222 22334445678888888766554
No 335
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.47 E-value=0.0005 Score=60.08 Aligned_cols=272 Identities=10% Similarity=0.075 Sum_probs=117.2
Q ss_pred CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEc-----------CCCCeEEEEe-CCCeEEEEEEeCCcccee
Q 016257 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGCKLFEVYGGATDIN 100 (392)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-----------p~~~~l~~~~-~d~~i~iw~~~~~~~~~~ 100 (392)
....+....++++.....+ -..+..+..-.+.....-|+ .+.++|+..+ .+++|+|.|+.+.....+
T Consensus 35 ~pD~LatVDvdP~S~tYgq-VIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~ 113 (461)
T PF05694_consen 35 KPDYLATVDVDPDSPTYGQ-VIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR 113 (461)
T ss_dssp ---EEEEEE--TTSTTTTS-EEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E
T ss_pred CCCeEEEEECCCCCCCccc-EEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc
Confidence 3555667777765443311 11122222222455555564 2345666655 778899999985543222
Q ss_pred ecccc----CCCCCCCCCeEEEEecCCCCEEEEEe--C----CCcEEEEeCCCCceeecccCCCC---cEEEEEecCCCC
Q 016257 101 LLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGG--V----DGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSE 167 (392)
Q Consensus 101 ~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~--~----dg~i~i~d~~~~~~~~~~~~~~~---~i~~i~~~~~~~ 167 (392)
+.... ...-..-.....+-.-|+|+.++++- . -|-+.++|-++.+.......... --+++-|.|..+
T Consensus 114 l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n 193 (461)
T PF05694_consen 114 LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN 193 (461)
T ss_dssp EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT
T ss_pred eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC
Confidence 21100 00000011223334457888888753 2 25578888877766655443322 356788899888
Q ss_pred eEEEEc--------------------CCCcEEEEECCCCeeeEEEecCCCc-ceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257 168 FLATTS--------------------TDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALL 226 (392)
Q Consensus 168 ~l~~~~--------------------~d~~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (392)
.++++. ...++.+||+.+.+.++++....++ ..-.+.|..+....+-|+ .++ -..+|
T Consensus 194 vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv-g~a-Lss~i 271 (461)
T PF05694_consen 194 VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV-GCA-LSSSI 271 (461)
T ss_dssp EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE-EEE---EEE
T ss_pred EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE-EEe-ccceE
Confidence 888864 2357999999999999999876543 355677766654433321 222 33344
Q ss_pred EEEeC-CCce----eeeeec-----------------ccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeee
Q 016257 227 AVYDI-STWN----KIGHKR-----------------LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSK 283 (392)
Q Consensus 227 ~v~d~-~~~~----~~~~~~-----------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 283 (392)
..|-. +.++ .+..+. ....-++.+.+|.|.++|+..+ ..|.|+.||+......+...
T Consensus 272 ~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 272 WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp EEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred EEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 44432 3221 111111 1134578999999999998877 68999999998744333221
Q ss_pred ccc-----------------cCcceEEEEEeeCCCeEEEEe
Q 016257 284 RLH-----------------LGTSIALVEFCPTQRVVLTAS 307 (392)
Q Consensus 284 ~~~-----------------~~~~i~~~~~s~~~~~l~~~~ 307 (392)
+.. ..+...-+..|-||+.|...+
T Consensus 352 qv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 352 QVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 111 012335667777887665543
No 336
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.9e-06 Score=72.66 Aligned_cols=208 Identities=12% Similarity=0.011 Sum_probs=141.6
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--C-ceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCC
Q 016257 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L-RIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDG 186 (392)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~ 186 (392)
|...|+.+.-. ..+++.+++.||.++.|--.. + +.+..+..|-..|.+++.+-++.++.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55666666544 456999999999999997432 2 223334445567889999999999999777 999999999875
Q ss_pred eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeC
Q 016257 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSK 264 (392)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 264 (392)
..+.-+....-.....+..++.... ....+..-.++.+.++|-.... .......|..+|..+.+.+-+..+++...
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 5443332211101112222232221 1113555678899999977543 23344567899999999999999999999
Q ss_pred CCcEEEEecCC-ceeeee-----ee-------ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257 265 DGDICVVDVKK-MEINHW-----SK-------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 265 dg~i~iwd~~~-~~~~~~-----~~-------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
.|.|.-|.... .+.+.. +. .........++.|+|+|..+.+-+.|..|+++.++++.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 99999998873 111110 00 00115678899999999999999999999999998663
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00017 Score=64.36 Aligned_cols=225 Identities=11% Similarity=0.106 Sum_probs=152.8
Q ss_pred CCeeEEEEcCCCCeEEE-EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCcEEEE
Q 016257 64 GDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM 139 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~ 139 (392)
.....++.++.+..++. ...++.|.+.|............. .....++++++++.+.++.. ++++.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------LGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------cCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 34557888888885554 444578999996665543333221 24578999999988877765 6889999
Q ss_pred eCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEe----cCCCcceEEEEecCCCCcceE
Q 016257 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~ 214 (392)
|..+.+..........+ ..++++|+|+.++.+. .++.+.+.|.+.....+ -. .........+.++|++.+.++
T Consensus 146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence 98888887765444445 8899999999766655 67899999976655543 11 111224578899999997443
Q ss_pred EEEEEeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccc-cCcce
Q 016257 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLH-LGTSI 291 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~i 291 (392)
....+.++.+...|..++........... ....+..+|+|+.+.+... .+.+.+-|..+.........+. ....+
T Consensus 224 --~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~ 301 (381)
T COG3391 224 --ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEP 301 (381)
T ss_pred --EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccc
Confidence 23333457999999998776654222222 4567899999999988854 4889999999887776553321 12346
Q ss_pred EEEEEeeCC
Q 016257 292 ALVEFCPTQ 300 (392)
Q Consensus 292 ~~~~~s~~~ 300 (392)
..+++.+..
T Consensus 302 ~~~~~~~~~ 310 (381)
T COG3391 302 VSIAISPLY 310 (381)
T ss_pred eeccceeec
Confidence 666666643
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.42 E-value=0.00025 Score=58.45 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=110.5
Q ss_pred eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (392)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~ 85 (392)
.+..++|+|+... |.++.... -.|+.++..+.. +....+.+ .+....+++..++.++++.-+++
T Consensus 23 e~SGLTy~pd~~t--LfaV~d~~--------~~i~els~~G~v-----lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 23 ELSGLTYNPDTGT--LFAVQDEP--------GEIYELSLDGKV-----LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQ 86 (248)
T ss_dssp -EEEEEEETTTTE--EEEEETTT--------TEEEEEETT--E-----EEEEE-SS--SSEEEEEE-STTEEEEEETTTT
T ss_pred CccccEEcCCCCe--EEEEECCC--------CEEEEEcCCCCE-----EEEEeCCC-CCCceeEEEECCCEEEEEEcCCC
Confidence 4899999998765 44444432 236777755422 23344555 46789999988887777766789
Q ss_pred eEEEEEEeCCccceee---ccccCCC-CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC---Cceee--c------c
Q 016257 86 GCKLFEVYGGATDINL---LAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIIL--D------E 150 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~---~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~--~------~ 150 (392)
.+.++++......... ....... ..++..+..++|.+.++.|+.+-+..-..+|.+.. ..... . .
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 9999998543321111 1111111 12456789999999888888887776667776643 11110 0 0
Q ss_pred cCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCC--------CcceEEEEecCCCCcceEEEEEEeC
Q 016257 151 PKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQRG 221 (392)
Q Consensus 151 ~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (392)
......+.+++++|. +.+++.+..+..+..+| .+++.+..+.... -.....|+|.++|. +...+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~------LYIvs 239 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN------LYIVS 239 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--------EEEEE
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC------EEEEc
Confidence 112235889999995 56677777888899999 5777766554322 12467899999997 45555
Q ss_pred CccEEEEE
Q 016257 222 DKALLAVY 229 (392)
Q Consensus 222 ~d~~i~v~ 229 (392)
+-+..++|
T Consensus 240 EpNlfy~f 247 (248)
T PF06977_consen 240 EPNLFYRF 247 (248)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEe
Confidence 66655554
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.39 E-value=1.3e-07 Score=84.26 Aligned_cols=199 Identities=15% Similarity=0.064 Sum_probs=128.9
Q ss_pred CCCeeEEEEcCCC--CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEe----CCCc
Q 016257 63 EGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH 135 (392)
Q Consensus 63 ~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~ 135 (392)
...+.|+++.-+. ..+++|..+|.|.+-.+......... ....+..++++++|++ |.+.||.|- .|..
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E-----~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE-----VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce-----ecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 3457777775533 47889999999999887655432111 1113567899999998 777888774 3567
Q ss_pred EEEEeCCCC--cee--ecccC-CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecC-C
Q 016257 136 LRIMHWPSL--RII--LDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSK-D 208 (392)
Q Consensus 136 i~i~d~~~~--~~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~ 208 (392)
+.|||+.++ .+. ..+.. .-....+++|..+.+++++|...+.+.++|++.... ...+. ...+..+..+| .
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC
Confidence 999999876 111 11222 223566888998889999999989999999984322 12221 12466777788 4
Q ss_pred CCcceEEEEEEeCCccEEEEEe-CCCcee-eeeeccc----CCCcEEEEECCCC-CEEEEEeC-CCcEEEEecCC
Q 016257 209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLL----RKPASVLSISLDG-KYLAMGSK-DGDICVVDVKK 275 (392)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~v~d-~~~~~~-~~~~~~~----~~~v~~~~~s~~~-~~l~~~~~-dg~i~iwd~~~ 275 (392)
..+ +.+..|+.|.+|| .+.-+. +..+... ...+..++|+|-. ..+++... .++|++||+..
T Consensus 208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 554 5566699999999 443332 2222211 2348899999953 34555554 47899998863
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.38 E-value=0.00019 Score=63.61 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=129.2
Q ss_pred cCCCCeEEEEe---------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 72 NPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 72 sp~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
|||+++++... ..+.+.|+|+++++....... ...+....|||+|+.++... ++.|.+.+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------ETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------ccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 57888777632 235688899888653221111 35778999999999999876 6789999987
Q ss_pred CCceeecccCCC-----------------CcEEEEEecCCCCeEEEEcCC-Cc---------------------------
Q 016257 143 SLRIILDEPKAH-----------------KSVLDMDFSLDSEFLATTSTD-GS--------------------------- 177 (392)
Q Consensus 143 ~~~~~~~~~~~~-----------------~~i~~i~~~~~~~~l~~~~~d-~~--------------------------- 177 (392)
+++..+...... +.-..+-||||+++|+....| ..
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence 775443222221 122467899999998875322 11
Q ss_pred --------EEEEECCCCeeeE-EEe---cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccC
Q 016257 178 --------ARIWKTEDGVAWT-FLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLR 244 (392)
Q Consensus 178 --------i~vwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 244 (392)
+.++|+.+++... ... ......+..+.|.+++..+++..+--......+.+.|..++....... ...
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 2344554443321 111 123345778899999885333222222233456677776654432222 112
Q ss_pred CCc---EEEEEC-CCC-CEEEEEeCCCc--EEEEecCCceeeeeeeccccCcceEE-EEEeeCCCeEE-EEeCC--CeEE
Q 016257 245 KPA---SVLSIS-LDG-KYLAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVL-TASKE--WGAM 313 (392)
Q Consensus 245 ~~v---~~~~~s-~~~-~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-~~~~d--g~i~ 313 (392)
..+ ....+. +++ .++.....||. |.+++..++...... .+ ...|.. +.|+++++.|+ ++..+ +.-.
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT-~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT-SG--DWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S--SS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc-cC--ceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 222 245554 555 44555556775 555566666644332 22 456644 77888877554 55443 3556
Q ss_pred EEEeecC
Q 016257 314 ITKLTVP 320 (392)
Q Consensus 314 iw~~~~~ 320 (392)
+|.++..
T Consensus 309 lY~v~~~ 315 (353)
T PF00930_consen 309 LYRVSLD 315 (353)
T ss_dssp EEEEETT
T ss_pred EEEEEeC
Confidence 6666544
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.38 E-value=0.00036 Score=62.04 Aligned_cols=244 Identities=14% Similarity=0.058 Sum_probs=125.1
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce-eeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 143 (392)
.|+.+.|.++...|++|...|.|.||.....+.-. ... .+-....+.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~----------~~~~~~~~~~~~------~~~~~~~l~di~~ 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ----------PPDLDYNFRRFS------LNNSPGKLTDISD 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------S--------GGGSS-SEEE-GG
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC----------CcccCccccccc------ccCCCcceEEehh
Confidence 58899999999999999999999999987664221 000 011111111100 0011112222211
Q ss_pred --------C-ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-------CCCcceEEEEecC
Q 016257 144 --------L-RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSK 207 (392)
Q Consensus 144 --------~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~ 207 (392)
+ .+..-+....++|++++.| |=.+++.|.++|.+.|.|+|....+..-.. .....++++.|..
T Consensus 67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 67 RAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp G--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred hCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE
Confidence 1 1122223335789999997 445999999999999999998877665321 1234577787762
Q ss_pred ---CCCcceEEEEEEeCCccEEEEEeCCC---ce----eeeeecccCCCcEEEE-ECCC-C-------------------
Q 016257 208 ---DGTKPFLFCTVQRGDKALLAVYDIST---WN----KIGHKRLLRKPASVLS-ISLD-G------------------- 256 (392)
Q Consensus 208 ---~~~~~~~~~~~~~~~d~~i~v~d~~~---~~----~~~~~~~~~~~v~~~~-~s~~-~------------------- 256 (392)
.+...-..+++.|...|.+.+|.+.- +. .......+..++..+. ++.+ |
T Consensus 146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 22221233467888889999997641 11 1111123444554443 3211 1
Q ss_pred -CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe-----eCCCeEEEEeCCCeEEEEEeecCccccceee
Q 016257 257 -KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC-----PTQRVVLTASKEWGAMITKLTVPADWKEWQI 328 (392)
Q Consensus 257 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 328 (392)
.+++++ .+..++++...+.+........ ......+.+- ..+..|++-..+|.++++.+...++....++
T Consensus 226 ~g~vVvv-Se~~irv~~~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 226 PGYVVVV-SESDIRVFKPPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp -EEEEEE--SSEEEEE-TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred CcEEEEE-cccceEEEeCCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 134444 4667999999888766654321 2233344452 3566889999999999999987665544433
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.00011 Score=66.99 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=87.0
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
...|.--+++..+++++.|+..|.+++|+-..++....... ...+.+..+..|++..++|.|+..|.|.++.+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc------CccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 34455555666788999999999999999877653222111 134566777888888889999999999999886
Q ss_pred CCcee---ecc---cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 016257 143 SLRII---LDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (392)
Q Consensus 143 ~~~~~---~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 185 (392)
...+. ... ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 53321 111 12345899999999999999999999999888876
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.37 E-value=0.00025 Score=63.91 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=95.9
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 192 (392)
-....+.++|+|+.++++ .||...++.....+... .+.-....|.+.++ +|+-..+++|.++.--+.+....+
T Consensus 33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEE
Confidence 346889999999998885 58888888743333221 23456788998554 666666888999743333333344
Q ss_pred ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (392)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 272 (392)
..+. .+..+-. |.. +...+ ++.|.+||..+++.+..+... +|..+.|+++|.+++..+.+ .+.|++
T Consensus 106 ~~~~--~~~~If~---G~L-----L~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 106 KLPF--SVEKIFG---GNL-----LGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --SS---EEEEE----SSS-----EEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cCCc--ccceEEc---CcE-----EEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 4332 2444433 664 33333 448999999999988887653 38999999999999999865 588876
Q ss_pred cCCc--------eeeeeeecccc-CcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 273 VKKM--------EINHWSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 273 ~~~~--------~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
.... .....+...|. ...|.+..|..+ .++-.+.. +++-
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 5443 00000111121 467888899766 44444444 6666
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.00018 Score=65.54 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=131.1
Q ss_pred eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (392)
Q Consensus 60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 139 (392)
.+..+.+..+..|++..++|.|+..|.|.++-+............ .....|...|++++|++|+..+++|...|+|..-
T Consensus 73 ~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~ 151 (726)
T KOG3621|consen 73 EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT 151 (726)
T ss_pred cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec-cccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence 334667778888999999999999999999988774432222211 1122378899999999999999999999999988
Q ss_pred eCCCCc----eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc-ceEEEEecCC---CCc
Q 016257 140 HWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKD---GTK 211 (392)
Q Consensus 140 d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~---~~~ 211 (392)
.+.+.. ....+......|-.++... + +|+.++.- ...+++.+.++..+.-....++ .-...+|-|. ++.
T Consensus 152 ~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~-~LLVStl~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~ 228 (726)
T KOG3621|consen 152 ELDSRQAFLSKSQEILSEDSEIVQLDYLQ-S-YLLVSTLT-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQK 228 (726)
T ss_pred EechhhhhccccceeeccCcceEEeeccc-c-eehHhhhh-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCC
Confidence 887621 1112223334566666552 3 33333322 2345565543321111111111 0123344443 122
Q ss_pred ceEEEEEEeCCccEEEEEeCCC-ceeeeeecc-------------cC-----------CCcEEEEECC----CCCEEEEE
Q 016257 212 PFLFCTVQRGDKALLAVYDIST-WNKIGHKRL-------------LR-----------KPASVLSISL----DGKYLAMG 262 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~-------------~~-----------~~v~~~~~s~----~~~~l~~~ 262 (392)
.. +.++.-| .++|..+- |+.+++... +. ..-..+.+.. .+..+.+-
T Consensus 229 ~~----IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~ 303 (726)
T KOG3621|consen 229 PQ----IYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW 303 (726)
T ss_pred ce----EEEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEe
Confidence 21 2222222 45665432 222111100 00 0011111110 12233333
Q ss_pred eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
++-| |+|+|.++.+....... ...|..++- +|+-|+.-..|+.+++..+...
T Consensus 304 te~G-iyv~d~~~~~v~l~se~---~~DI~dVs~--~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 304 TEVG-IYVFDSNNSQVYLWSEG---GHDILDVSH--CGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred ecce-EEEEEeccceEEEeecC---CCceeEEee--cCceEEEEecCCceeEEEeehh
Confidence 4344 88999888877665433 335655554 5566667777777777766533
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=2.7e-07 Score=82.28 Aligned_cols=201 Identities=15% Similarity=0.232 Sum_probs=129.9
Q ss_pred CCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecC-CCCeEEEEc----CCCcEEEEE
Q 016257 112 AGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DSEFLATTS----TDGSARIWK 182 (392)
Q Consensus 112 ~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~----~d~~i~vwd 182 (392)
...+.|++++-+ ...+++|..+|.|.+-..+...- .....++...+++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 346677777653 34788899999999988764322 223445556899999998 566677663 356799999
Q ss_pred CCCC--eee--EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECC-CCC
Q 016257 183 TEDG--VAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGK 257 (392)
Q Consensus 183 ~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 257 (392)
+.++ .+. ..+.........+++|..+.+. +.+|.....+.++|++... ..........+..+.++| .+.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~kl-----vlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKL-----VLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcch-----hhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCC
Confidence 9876 222 2222222334568888877775 6777778899999998422 112222234566778888 778
Q ss_pred EEEEEeCCCcEEEEe-cCCceee-eeeeccc--cCcceEEEEEeeCCC-eEEEEeC-CCeEEEEEeec
Q 016257 258 YLAMGSKDGDICVVD-VKKMEIN-HWSKRLH--LGTSIALVEFCPTQR-VVLTASK-EWGAMITKLTV 319 (392)
Q Consensus 258 ~l~~~~~dg~i~iwd-~~~~~~~-~~~~~~~--~~~~i~~~~~s~~~~-~l~~~~~-dg~i~iw~~~~ 319 (392)
++++-. ||.|.+|| ..+-+.+ ..+.... ....+..++|.|... .+++... .++|+++++..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 887766 89999999 4443322 2221110 023489999999654 4555554 47888888863
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00072 Score=62.66 Aligned_cols=235 Identities=11% Similarity=0.094 Sum_probs=135.7
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEe---------CCCcEEEEeCCCC
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG---------VDGHLRIMHWPSL 144 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~i~d~~~~ 144 (392)
..++.++.++.|+-+|.++++...+....... . .-..+.-+| .+..++.++ .++.+..+|.+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~---~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--P---PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--C---cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC
Confidence 57788888999999999998876655432110 0 000111112 123555554 3678899999999
Q ss_pred ceeecccCCCC--------------------cE-EEEEecCCCCeEEEEcCCC------------------cEEEEECCC
Q 016257 145 RIILDEPKAHK--------------------SV-LDMDFSLDSEFLATTSTDG------------------SARIWKTED 185 (392)
Q Consensus 145 ~~~~~~~~~~~--------------------~i-~~i~~~~~~~~l~~~~~d~------------------~i~vwd~~~ 185 (392)
+.+.+...... .+ ...++.+.+..++.++.++ .+.-+|.++
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 87765433211 01 1234455567778777665 699999999
Q ss_pred CeeeEEEecCCCc-----ceEEEEec----CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC
Q 016257 186 GVAWTFLTRNSDE-----KIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (392)
Q Consensus 186 ~~~~~~~~~~~~~-----~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (392)
++..-..+..... ......+. -++... ..++.++.+|.+...|.++++.+-..... ...++.+|
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~--~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-- 338 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV--PAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-- 338 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee--EEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--
Confidence 9988776532210 00011111 123211 12577888999999999999887544321 11233444
Q ss_pred CEEEEE------------------eCCCcEEEEecCCceeeeeeeccccC------cceEEEEEeeCCCeEEEEeCCCeE
Q 016257 257 KYLAMG------------------SKDGDICVVDVKKMEINHWSKRLHLG------TSIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 257 ~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
..++.+ ..+|.+.-.|+.+++.+-........ .+...-.....+..|+.++.||.+
T Consensus 339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l 418 (488)
T cd00216 339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYF 418 (488)
T ss_pred ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeE
Confidence 233332 23577888899988866554322000 111111112255788899999999
Q ss_pred EEEEeecCcc
Q 016257 313 MITKLTVPAD 322 (392)
Q Consensus 313 ~iw~~~~~~~ 322 (392)
+.+|..+++.
T Consensus 419 ~ald~~tG~~ 428 (488)
T cd00216 419 RAFDATTGKE 428 (488)
T ss_pred EEEECCCCce
Confidence 9998877654
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.0019 Score=57.85 Aligned_cols=241 Identities=11% Similarity=0.144 Sum_probs=158.8
Q ss_pred CeeEEEEcCCCCeEEEEeC-CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCC
Q 016257 65 DPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP 142 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~ 142 (392)
....+...|++..++.... ...+...+.. ......... . .......++.++.+..++... .++.|.+.|..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~-----~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~ 104 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLS-----V-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA 104 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeecc-----C-CCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence 5667788888865554432 2234444443 111111000 0 003346788888888555544 45889999987
Q ss_pred CCceeecccCCCCcEEEEEecCCCCeEEEEcC---CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
+.+......... ....++++|+++.+..+.. ++++.+.|-.+.+......... .+ ..++++|++... ..+
T Consensus 105 ~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~v----yv~ 177 (381)
T COG3391 105 TNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKV----YVT 177 (381)
T ss_pred ccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeE----EEE
Confidence 766654443333 5678999999988777665 6889999999888888855433 23 899999999973 344
Q ss_pred eCCccEEEEEeCCCceeee-e---ecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceE
Q 016257 220 RGDKALLAVYDISTWNKIG-H---KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIA 292 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~ 292 (392)
...++.|.+.|........ . .......-..+.++|+|.++++.... +.+...|..++............ ...
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~ 256 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR 256 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence 4678999999987655542 1 11122344578999999977766544 58999999998877652222212 567
Q ss_pred EEEEeeCCCeEEEEeCC-CeEEEEEeecC
Q 016257 293 LVEFCPTQRVVLTASKE-WGAMITKLTVP 320 (392)
Q Consensus 293 ~~~~s~~~~~l~~~~~d-g~i~iw~~~~~ 320 (392)
.+..+|+|+.+.+.... +.+.+-+....
T Consensus 257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 257 GVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 78999999988877544 77777776654
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.29 E-value=3.6e-05 Score=68.99 Aligned_cols=173 Identities=16% Similarity=0.063 Sum_probs=109.5
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc---CC-CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (392)
.+.+-|.+ +.....+......+..-.|+|++..++..+ .. ..+.++++.+++....... ...-...+|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCC
Confidence 34444443 444344444455677789999998766542 22 3599999998877666552 22446778999998
Q ss_pred cceEEEEEEeCC--ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC-CC--cEEEEecCCceeeeeeecc
Q 016257 211 KPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DG--DICVVDVKKMEINHWSKRL 285 (392)
Q Consensus 211 ~~~~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~ 285 (392)
.+ +++... .-.|+++|+......+ +....+.-+.-.|+|||++++..+. .| .|.++|++.....+.....
T Consensus 251 ~l----~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KL----AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EE----EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 73 333333 4457778888766433 4443444457899999999887764 34 3777788777765444322
Q ss_pred ccCcceEEEEEeeCCCeEEEEeCC-Ce--EEEEEee
Q 016257 286 HLGTSIALVEFCPTQRVVLTASKE-WG--AMITKLT 318 (392)
Q Consensus 286 ~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~iw~~~ 318 (392)
+.-....|+|||++|+..+.. |. |.+.++.
T Consensus 326 ---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 326 ---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred ---CCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 222278899999998877743 44 4444443
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.28 E-value=0.0016 Score=60.76 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=114.1
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCC----CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA----GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 150 (392)
+..|++++.++.|+-+|..+++...+............ ..-..+++ .+..++.++.|+.+.-.|.++|+.+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 44677777788888889888876665433211000000 00011222 2346777888999999999999987654
Q ss_pred cCCCC-cEEEEEecC--CCCeEEEEc------CCCcEEEEECCCCeeeEEEecCCCc-----------------------
Q 016257 151 PKAHK-SVLDMDFSL--DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDE----------------------- 198 (392)
Q Consensus 151 ~~~~~-~i~~i~~~~--~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~----------------------- 198 (392)
..... .-..+.-+| .+..++.+. .+|.|..+|.++++.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 42211 101111222 123455443 2688999999999887665432110
Q ss_pred -------ce-EEEEecCCCCcceEEEEEEeC----------C----ccEEEEEeCCCceeeeeecccCCCc---------
Q 016257 199 -------KI-ELCRFSKDGTKPFLFCTVQRG----------D----KALLAVYDISTWNKIGHKRLLRKPA--------- 247 (392)
Q Consensus 199 -------~v-~~~~~~~~~~~~~~~~~~~~~----------~----d~~i~v~d~~~~~~~~~~~~~~~~v--------- 247 (392)
.+ ..+++.|....+| +-++. . ...|.-.|+++++..-.++.....+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy---~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIY---FGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEE---EeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00 0234444444322 23322 0 1267788999998865554322221
Q ss_pred EEEEECCCCC---EEEEEeCCCcEEEEecCCceee
Q 016257 248 SVLSISLDGK---YLAMGSKDGDICVVDVKKMEIN 279 (392)
Q Consensus 248 ~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~ 279 (392)
.-+.+..+|+ .++.+..+|.+++.|..+++.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2233334665 7889999999999999999875
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=0.00039 Score=55.86 Aligned_cols=139 Identities=17% Similarity=0.101 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC
Q 016257 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK 245 (392)
Q Consensus 166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 245 (392)
..+++.|+..+.+.-.|..+++....-... ..+.+-+.- -|.. ++.+...+.+++.+.+++.....+...+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCE-----EEEEEccCcEEEEEecchhheeeeeehhh
Confidence 356778888899999999988876543322 234333322 2343 68889999999999999977766655443
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
--......+++..+.+|+.|++.+..|.++...+...+- . .+.-.+.+..|-...|..+...|.+.-
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-g-G~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-G-GGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEeccc-C-CceeccceecCCCceEEEEeccceEEE
Confidence 333456678999999999999999999999887776532 2 334445556663334444444555443
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.23 E-value=0.0019 Score=53.31 Aligned_cols=200 Identities=12% Similarity=0.128 Sum_probs=109.5
Q ss_pred eeCCCCCeeEEEEcCCCCe-EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257 59 FDESEGDPMTIAVNPSGDD-FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (392)
+.+-...+..++|+|+.+. +++....+.|..++. +++...+... ...+....+++..++.++++--.++.+.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l------~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL------DGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC------CCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 3444556999999998664 555566676666664 3343333321 1235678899988887777665688999
Q ss_pred EEeCCCCc----e--ee--c--cc-CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC---CeeeEEEe-------cCC
Q 016257 138 IMHWPSLR----I--IL--D--EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLT-------RNS 196 (392)
Q Consensus 138 i~d~~~~~----~--~~--~--~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~-------~~~ 196 (392)
++++.... . .. . .. .+...+..++|+|.++.|+.+-+..-..+|.++. ........ ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99884321 1 01 1 11 1234689999999888887777766677777653 22211111 111
Q ss_pred CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC---------CCcEEEEECCCCCEEEEEeCCCc
Q 016257 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGD 267 (392)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~ 267 (392)
...+.+++++|....+ ++.+.....|..+| .+++.+..+.... .....++|.++|++. ..++-+.
T Consensus 170 ~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNl 243 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNL 243 (248)
T ss_dssp SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTE
T ss_pred eccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCce
Confidence 2247889999987764 46688889999999 5566655443322 246789999998554 4455554
Q ss_pred EEEE
Q 016257 268 ICVV 271 (392)
Q Consensus 268 i~iw 271 (392)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-05 Score=72.17 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE-EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 191 (392)
..+.-+.|+|.-.++|.+..+|.+.+..+. .+.+..+..+...++ +++|.|||+.|+.|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999987 666667775666666 999999999999999999999999999988877
Q ss_pred EecCCCcceEEEEecC
Q 016257 192 LTRNSDEKIELCRFSK 207 (392)
Q Consensus 192 ~~~~~~~~v~~~~~~~ 207 (392)
........|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 5444455788888874
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.17 E-value=8.5e-05 Score=70.63 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=95.1
Q ss_pred CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc--eEEEEEEeCCccEEEEEeCCCce-eeeeec----ccCCC
Q 016257 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQRGDKALLAVYDISTWN-KIGHKR----LLRKP 246 (392)
Q Consensus 174 ~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~----~~~~~ 246 (392)
....++-.|++.|+.+..+..+...+|..+ .|+.+.- ----.+.|-.++.+..||.|-.. .+.... .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 457899999999999999988766545444 4432100 00004667778889999998642 211111 22446
Q ss_pred cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 247 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
.+|++-+.+| +||+|+.+|.||+||- .++..+....+- +.+|..|..+.||++|++.+.. .+.+.+..
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEEe
Confidence 7788777666 8899999999999994 444333333444 7899999999999999887755 67776653
No 354
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.17 E-value=0.0077 Score=57.68 Aligned_cols=153 Identities=13% Similarity=0.203 Sum_probs=101.0
Q ss_pred cEEEEEecCC-CCeEEEEc----------CCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257 156 SVLDMDFSLD-SEFLATTS----------TDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (392)
Q Consensus 156 ~i~~i~~~~~-~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (392)
.|.++.|..| +.++++|+ ..|.|.+|....++.++.... ...+.+.++.-- +|+ +.++-.
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-------llA~In 847 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-------LLAGIN 847 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-------EEEecC
Confidence 3555668777 66777765 247788888877444433322 122234433322 233 445556
Q ss_pred cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC--CceeeeeeeccccCcceEEEEEeeCCC
Q 016257 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLGTSIALVEFCPTQR 301 (392)
Q Consensus 224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~ 301 (392)
..|++|+..+.+.++.-..+..++..+...-.|..+++|.--+.+.+...+ .+.........+ ....+++.+-.+ .
T Consensus 848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~-p~Wmtaveil~~-d 925 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN-PNWMTAVEILDD-D 925 (1096)
T ss_pred cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC-ccceeeEEEecC-c
Confidence 789999999887777767778889999999999999999877777665544 444555444455 777888887644 4
Q ss_pred eEEEEeCCCeEEEEEee
Q 016257 302 VVLTASKEWGAMITKLT 318 (392)
Q Consensus 302 ~l~~~~~dg~i~iw~~~ 318 (392)
.++.+..+|.+.+-..+
T Consensus 926 ~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 926 TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eEEeecccccEEEEEec
Confidence 55566677888777665
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.15 E-value=0.0045 Score=56.39 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=107.0
Q ss_pred eEEEEecCCCCEEEEE-eCCC----cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-----------CcE
Q 016257 115 QKCLSFSVDGSRFAAG-GVDG----HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSA 178 (392)
Q Consensus 115 v~~~~~s~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------~~i 178 (392)
+....+||||++++.+ +..| .++++|+++++.+....... ....+.|.++++.|+....+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999998865 3333 59999999997654322211 12339999998877665432 237
Q ss_pred EEEECCCCeee--EEEecCCCcc-eEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCCCc----eeeeeecccCCCc-EE
Q 016257 179 RIWKTEDGVAW--TFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW----NKIGHKRLLRKPA-SV 249 (392)
Q Consensus 179 ~vwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~~~----~~~~~~~~~~~~v-~~ 249 (392)
+.|.+.+.... ..+....... ...+..+++++++++ ....+.+ ..+.+.|+... .....+......+ ..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i--~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI--SSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE--EEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE--EEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 88888766443 3333333323 567889999986432 3444455 78999999874 2222333223333 33
Q ss_pred EEECCCCCEEEEEe---CCCcEEEEecCCcee---eeeeeccccCc--ceEEEEEeeCCC-eEEEEeCCC--eEEEEEee
Q 016257 250 LSISLDGKYLAMGS---KDGDICVVDVKKMEI---NHWSKRLHLGT--SIALVEFCPTQR-VVLTASKEW--GAMITKLT 318 (392)
Q Consensus 250 ~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~--~i~~~~~s~~~~-~l~~~~~dg--~i~iw~~~ 318 (392)
+... .+.+++... .++.|.-.++..... ...+ ..+ .. .+..+.. .+. +++....++ .|+++++.
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~-~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPE-DEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCC-CCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 3333 333443332 235677778776552 2122 233 33 4555554 444 445555565 44555555
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.14 E-value=0.0053 Score=55.94 Aligned_cols=222 Identities=16% Similarity=0.148 Sum_probs=116.5
Q ss_pred eeEEEEcCCCCeEEEE-eCCC----eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC------
Q 016257 66 PMTIAVNPSGDDFVCS-TTNG----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG------ 134 (392)
Q Consensus 66 v~~~~~sp~~~~l~~~-~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------ 134 (392)
+....++|+++++|.+ +..| .++++|+.+++......... ....+.|.+|++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--------~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--------KFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--------ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--------ccceEEEeCCCCEEEEEEeCccccccc
Confidence 3367889999998865 3333 59999999886544332211 113499999988877665332
Q ss_pred -----cEEEEeCCCCcee--ecccCCCC-c-EEEEEecCCCCeEEEEcC---C-CcEEEEECCCC----eeeEEEecCCC
Q 016257 135 -----HLRIMHWPSLRII--LDEPKAHK-S-VLDMDFSLDSEFLATTST---D-GSARIWKTEDG----VAWTFLTRNSD 197 (392)
Q Consensus 135 -----~i~i~d~~~~~~~--~~~~~~~~-~-i~~i~~~~~~~~l~~~~~---d-~~i~vwd~~~~----~~~~~~~~~~~ 197 (392)
.|+.|.+.+...- ..+..... . ...+..++|+++|+.... + ..+.+.++..+ .....+.....
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 3777887665421 22222222 2 678889999998775432 2 34788888764 23344443333
Q ss_pred cceEEEEecCCCCcceEEEEEE--eCCccEEEEEeCCCcee---eeeecccCCCcEEEEECCCCCEEEEE-eCCC--cEE
Q 016257 198 EKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLAMG-SKDG--DIC 269 (392)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~ 269 (392)
+....+... +..++ +.+ ....+.|...++..... ...+..+...+.--.+...+.+|+.. ..++ .|+
T Consensus 278 ~~~~~v~~~--~~~~y---i~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLY---ILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp S-EEEEEEE--TTEEE---EEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ceEEEEEcc--CCEEE---EeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence 333334333 33322 233 23457788888876552 22333334432323333344455544 3443 588
Q ss_pred EEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (392)
Q Consensus 270 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 301 (392)
++++..+.....+.... .+.|..+...+++.
T Consensus 353 v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE-AGSVSGVSGDFDSD 383 (414)
T ss_dssp EEETT-TEEEEEEESSS-SSEEEEEES-TT-S
T ss_pred EEECCCCcEEeeecCCc-ceEEeccCCCCCCC
Confidence 99998333333332222 44556655555544
No 357
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.0055 Score=55.27 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=106.6
Q ss_pred eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC--CCCcEEE----
Q 016257 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLD---- 159 (392)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~---- 159 (392)
.|.||+..... ...+.. .+ +.+.++.|+.+.+ |++...||.+++||+.... ...+.. ....|..
T Consensus 62 ~I~iys~sG~l-l~~i~w------~~-~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSSGKL-LSSIPW------DS-GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCCCCE-eEEEEE------CC-CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCccccccc
Confidence 48888765543 333222 12 6899999998654 5555789999999986332 111111 1112222
Q ss_pred -EEecCCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCc--------ceEE-EEecCCCCcceEEEEEEeCCccEEEE
Q 016257 160 -MDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDE--------KIEL-CRFSKDGTKPFLFCTVQRGDKALLAV 228 (392)
Q Consensus 160 -i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~--------~v~~-~~~~~~~~~~~~~~~~~~~~d~~i~v 228 (392)
..+..+| ++.-..++.+.+..--... ..+.+...... .... ..++.+... .+....++.+.+
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~-----~i~~~~g~~i~~ 204 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVV-----EILLANGETIYI 204 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcce-----EEEEecCCEEEE
Confidence 2333344 3333344555444322211 11111110000 0000 122223222 122223344553
Q ss_pred EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (392)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 308 (392)
.+-...+. + ...+++..+++||+|+++|.-..+|.+.+.+.+-.+....+.... ......+.|.-+...++.-
T Consensus 205 i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~-- 277 (410)
T PF04841_consen 205 IDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSW-- 277 (410)
T ss_pred EEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEe--
Confidence 33322111 1 124689999999999999999999999999876665555543332 5677888897665443333
Q ss_pred CCeEEEEE
Q 016257 309 EWGAMITK 316 (392)
Q Consensus 309 dg~i~iw~ 316 (392)
...+.+..
T Consensus 278 ~~~l~lvg 285 (410)
T PF04841_consen 278 EDELLLVG 285 (410)
T ss_pred CCEEEEEC
Confidence 33555544
No 358
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.0025 Score=52.15 Aligned_cols=241 Identities=13% Similarity=0.074 Sum_probs=134.6
Q ss_pred CeeEEEEcCCCC-eEEEEeCCCe-EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----CcEE
Q 016257 65 DPMTIAVNPSGD-DFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLR 137 (392)
Q Consensus 65 ~v~~~~~sp~~~-~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~ 137 (392)
.-..+.|+|... -++.+-.-|+ ..++|....+........+-. | .--.-.|||||.+|+..-.| |.|-
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---H--fyGHGvfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---H--FYGHGVFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---e--eecccccCCCCcEEEeecCCCCCCCceEE
Confidence 444678888543 5666666665 567888777655444332211 1 11234799999998875433 7799
Q ss_pred EEeCCCC-ceeecccCCCCcEEEEEecCCCCeEEEEcC------------------CCcEEEEECCCCeeeEEEecC---
Q 016257 138 IMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTRN--- 195 (392)
Q Consensus 138 i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------d~~i~vwd~~~~~~~~~~~~~--- 195 (392)
|||.+.+ +.+.++..+.-.-..+.|.+||+.++.+.. .-++.+.|..++..+.+...+
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 9998754 334444555446788999999999887742 012344444445444332211
Q ss_pred CCcceEEEEecCCCCcceEEEEEEeCCcc-EEEEEeCCCceeeeeec-------ccCCCcEEEEECCCCCEEEEEe-CCC
Q 016257 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLAMGS-KDG 266 (392)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~-~dg 266 (392)
+...++.++..+||...+ .|-.-+..+. --.+=-...++++..+. .....|-+++.+.+..+++..+ ..+
T Consensus 224 ~~lSiRHld~g~dgtvwf-gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWF-GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEE-EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 223577788888887411 1111111111 11111112222222221 1234567788887666666555 455
Q ss_pred cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 267 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 317 (392)
...+||..++.+...... .....++ +...-++..+.+|.+.++.-
T Consensus 303 ~~vi~da~tG~vv~~a~l----~daaGva--~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 303 RAVIWDAATGAVVSEAAL----PDAAGVA--AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred eEEEEEcCCCcEEecccc----cccccce--eccCceEEecCCceEEeccc
Confidence 688999999998765321 1222333 34445667777888888743
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.11 E-value=0.0023 Score=54.69 Aligned_cols=229 Identities=12% Similarity=0.131 Sum_probs=123.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE----------
Q 016257 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---------- 192 (392)
Q Consensus 123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---------- 192 (392)
.++.|+.|+.+| +.+++........... ....|..+...|+-+.+++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 577899999888 9999983322222221 223499999999877766665 599999998764433311
Q ss_pred ---ecCCCcceEEEE-ecCCCCcceEEEEEEeCCccEEEEEeCCCc-----eeeeeecccCCCcEEEEECCCCCEEEEEe
Q 016257 193 ---TRNSDEKIELCR-FSKDGTKPFLFCTVQRGDKALLAVYDISTW-----NKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (392)
Q Consensus 193 ---~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 263 (392)
.......+...+ -........ +.......|.+|..... +..+.+.. ...+.+++|. ++.++.|.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~----L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRR----LCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceE----EEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEe
Confidence 111111233333 112222111 22222347887776542 23334333 4678899998 56777777
Q ss_pred CCCcEEEEecCCceeeeeeeccc----------cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc---cceeeee
Q 016257 264 KDGDICVVDVKKMEINHWSKRLH----------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW---KEWQIYS 330 (392)
Q Consensus 264 ~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~ 330 (392)
.++ ..+.|+.++.......... ...++..+.. +++.+|++- |..-.+-+....... -.|..
T Consensus 156 ~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~-- 229 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSS-- 229 (275)
T ss_pred CCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCC--
Confidence 554 8899999776554432111 0123444443 345666643 323333333322111 12322
Q ss_pred eeeeeeeeceEEEEeeecceeeeecccccccccCCCCc
Q 016257 331 LLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKI 368 (392)
Q Consensus 331 ~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~ 368 (392)
.+......... +.+..++.|.+|++.+++-++..+..
T Consensus 230 ~p~~~~~~~py-li~~~~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 230 APQSVAYSSPY-LIAFSSNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred chhEEEEECCE-EEEECCCEEEEEECcCCcEEEEEECC
Confidence 22222223333 33455677999999999876655543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.06 E-value=0.0012 Score=57.76 Aligned_cols=175 Identities=10% Similarity=0.114 Sum_probs=104.1
Q ss_pred cEEEEeCCCCceeecccCCC-CcEEEEE---ecCC----CCeEEEEcC----------CCcEEEEECCCC-----eeeEE
Q 016257 135 HLRIMHWPSLRIILDEPKAH-KSVLDMD---FSLD----SEFLATTST----------DGSARIWKTEDG-----VAWTF 191 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~-~~i~~i~---~~~~----~~~l~~~~~----------d~~i~vwd~~~~-----~~~~~ 191 (392)
.|++.|..+.+.+..+.-.. ..+.+++ +..+ ..+|++|+. .|.|.++++... +....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888887776654433222 2344443 4332 456776642 288999999884 22222
Q ss_pred EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeec-ccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
......++|++++-- ++. +..+..+.|.+|++...+ ....-. .....+.++... ++++++|.....+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-------lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-------LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-------EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEeecCcceEhhhh-CCE-------EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence 223345678888766 222 222224789999998776 322211 122355555544 66999999888888
Q ss_pred EEecCC-ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 270 VVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 270 iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
++..+. ...+..+........++++.|-++++.++.+..+|.+.++..+.
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 886553 23222222222256789999987778999999999999999873
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.04 E-value=0.00092 Score=62.76 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=94.8
Q ss_pred CcEEEEEecCCCCeEEEEc------CCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEE-------EEE
Q 016257 155 KSVLDMDFSLDSEFLATTS------TDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------TVQ 219 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~------~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~ 219 (392)
..+.+.+++|+|+.++... .|. .+.+++.. +.. ..+.... ......|+|+|..+.... +..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3678899999999887655 243 45555542 222 3333222 378889999987532210 111
Q ss_pred eCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE---EecCCceeee----eeeccccCcceE
Q 016257 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV---VDVKKMEINH----WSKRLHLGTSIA 292 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~~i~ 292 (392)
....+.+.+.+++.+.... .....|..+.|||||..++... ++.|++ -....++... .+...- ...+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l-~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL-GDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc-CCccc
Confidence 2233456555666554432 3356799999999999988876 577777 4444554111 111111 34468
Q ss_pred EEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257 293 LVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
++.|..++.++ .+..++...+|.+....
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDG 528 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCC
Confidence 89999999854 55556666677776543
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.03 E-value=0.006 Score=52.07 Aligned_cols=206 Identities=14% Similarity=0.112 Sum_probs=122.8
Q ss_pred eeEEEEcCCCCeEEEEe--CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-
Q 016257 66 PMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP- 142 (392)
Q Consensus 66 v~~~~~sp~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~- 142 (392)
....+++.|+++++... -...|.|.|+...+....+... .+..+--+. .+-+.+-+.||.+.-..+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------GCWLIYPSG-NRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------SEEEEEEEE-TTEEEEEETTSCEEEEEETS
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------CEEEEEecC-CCceEEEecCCceEEEEECC
Confidence 44567888998877654 3456888898887765444321 222222222 2457788889999988887
Q ss_pred CCceeecc----cCCCCc-EEEEEecCCCCeEEEEcCCCcEEEEECCCCeee--EEEecCC---------CcceEEEEec
Q 016257 143 SLRIILDE----PKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNS---------DEKIELCRFS 206 (392)
Q Consensus 143 ~~~~~~~~----~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~---------~~~v~~~~~~ 206 (392)
.|+...+. ....++ +..-++...+..++..+.+|.|+-.|+...... ..+.... .+.-..++++
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 45443221 111122 223345555556666788899999888765432 2222110 0123457888
Q ss_pred CCCCcceEEEEEEeCCc-------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCC-EEEEE-eCCCcEEEEecCCce
Q 016257 207 KDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMG-SKDGDICVVDVKKME 277 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~ 277 (392)
+...++|+ +.-.+.+ ..|-++|+.+++.+..+.. ..++.+++.+.+.+ +|++. ..++.+.+||..+++
T Consensus 247 ~~~~rlyv--LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 247 AASGRLYV--LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TTTTEEEE--EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cccCeEEE--EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 87776554 3333333 3588889999998877765 34577899998775 55544 457899999999999
Q ss_pred eeeeeec
Q 016257 278 INHWSKR 284 (392)
Q Consensus 278 ~~~~~~~ 284 (392)
.+..+..
T Consensus 324 ~~~~~~~ 330 (342)
T PF06433_consen 324 LVRSIEQ 330 (342)
T ss_dssp EEEEE--
T ss_pred EEeehhc
Confidence 9887754
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.01 E-value=0.0023 Score=56.94 Aligned_cols=202 Identities=15% Similarity=0.166 Sum_probs=105.1
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecccc-CCCCCCCCCeEEEEecC-----CC---CEEEE
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRFAA 129 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~---~~l~~ 129 (392)
++...++|++++.|.-| ++|.|..+|.+.|.|++....+....... .........++++.|+- |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 44557899999998554 99999999999999997776555432222 11222456788888863 33 36889
Q ss_pred EeCCCcEEEEeCC--C-Ccee----ecccCCCCcEEEEE-ecCC---------------------CCeEEEEcCCCcEEE
Q 016257 130 GGVDGHLRIMHWP--S-LRII----LDEPKAHKSVLDMD-FSLD---------------------SEFLATTSTDGSARI 180 (392)
Q Consensus 130 ~~~dg~i~i~d~~--~-~~~~----~~~~~~~~~i~~i~-~~~~---------------------~~~l~~~~~d~~i~v 180 (392)
|...|.+.+|.+. . +... .....+.++|..+. ++.+ ..++++++ +..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEE
Confidence 9999999999874 1 1111 11113334444444 3221 11344444 578999
Q ss_pred EECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC----CCcEEEEECCCC
Q 016257 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDG 256 (392)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~v~~~~~s~~~ 256 (392)
+...+.+..++... .......+.+-+-.......+++.-..+|.+++|.+...+.+....... ..+....++++|
T Consensus 240 ~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 240 FKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp E-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred EeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 99988877666552 2223444555321111112235666689999999999888876665432 123345667788
Q ss_pred CEEEEEe
Q 016257 257 KYLAMGS 263 (392)
Q Consensus 257 ~~l~~~~ 263 (392)
..++..+
T Consensus 319 di~~~~g 325 (395)
T PF08596_consen 319 DIFYWTG 325 (395)
T ss_dssp -EEEE-S
T ss_pred CEEEEeC
Confidence 7666554
No 364
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.01 E-value=0.0097 Score=52.99 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=60.2
Q ss_pred EEEEcCCCCeEEEEeCCCeEEE---EEEeCCc-cceeeccccCCCCCCC--CCeEEEEec-----------CCCCEEEEE
Q 016257 68 TIAVNPSGDDFVCSTTNGGCKL---FEVYGGA-TDINLLAKKMPPLQDA--GPQKCLSFS-----------VDGSRFAAG 130 (392)
Q Consensus 68 ~~~~sp~~~~l~~~~~d~~i~i---w~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~s-----------~~~~~l~~~ 130 (392)
.++.+|+++.|+.+..+..+.+ |+..... ....+.......+.+. ..|+++.+- +|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999877775544 5332211 1111111111122222 466666553 345689999
Q ss_pred eCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (392)
Q Consensus 131 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~ 164 (392)
..+|.|++|.- +|..+....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999984 7777777777888888888743
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.00 E-value=0.0011 Score=62.32 Aligned_cols=187 Identities=13% Similarity=0.084 Sum_probs=104.0
Q ss_pred CCeeEEEEcCCCCeEEEEe------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----
Q 016257 64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 133 (392)
..+...+++|+|+.++... .|..-.+|-...+.....+.. ......-.|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--------g~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--------GHSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--------CCCCCCceECCCCCceEEEecCcceE
Confidence 4678999999999888765 244445554433322222211 1236788999998877776432
Q ss_pred --------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEE---EECCCCee-e---EEEecCCCc
Q 016257 134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE 198 (392)
Q Consensus 134 --------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v---wd~~~~~~-~---~~~~~~~~~ 198 (392)
+.+.+.+++.++... ...+.|..+.|||||..++... +++|++ -....+.. + ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 233333444333221 2345799999999999888766 477776 44344431 1 112222333
Q ss_pred ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
.+..+.|..++.. + +.+.+.+..+...++...... .+.. ...++..++-+++ .++....++.+.
T Consensus 498 ~~~~l~W~~~~~L-~---V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDSL-V---VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCEE-E---EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 4678999999883 1 233334444555555532221 1111 2456667776653 455556666333
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=5.3e-05 Score=68.08 Aligned_cols=93 Identities=23% Similarity=0.200 Sum_probs=77.7
Q ss_pred ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcE-EEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 277 (392)
.+..+.|+|.-.. ++.+..+|.+.++.++ .+.+-.+..++..++ +++|.|||+.||+|-.||+|++.|+.++.
T Consensus 22 ~i~~~ewnP~~dL-----iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDL-----IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccch-----hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 5788999999886 7888999999999998 666667776777777 99999999999999999999999999988
Q ss_pred eeeeeeccccCcceEEEEEee
Q 016257 278 INHWSKRLHLGTSIALVEFCP 298 (392)
Q Consensus 278 ~~~~~~~~~~~~~i~~~~~s~ 298 (392)
.+....... ...|.++-|++
T Consensus 96 ~l~~~~~s~-e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSV-ETDISKGIWDR 115 (665)
T ss_pred ceecccccc-ccchheeeccc
Confidence 776643333 67888888864
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0097 Score=51.05 Aligned_cols=189 Identities=14% Similarity=0.027 Sum_probs=105.7
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----------
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------- 132 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------- 132 (392)
+.+.++..-..+..|++ +..| +.+++.+.+.....+.. ... -......+.+...|+|.+-++...
T Consensus 66 ~~~~~~~~~d~~g~Lv~-~~~g-~~~~~~~~~~~~t~~~~-~~~-~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 66 GGFSSGALIDAGGRLIA-CEHG-VRLLDPDTGGKITLLAE-PED-GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CCcccceeecCCCeEEE-Eccc-cEEEeccCCceeEEecc-ccC-CCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence 33444444334444544 3555 77777755543222111 111 112245678888899876554322
Q ss_pred CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCC--C----eeeEEEecCCCcceEEEEe
Q 016257 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED--G----VAWTFLTRNSDEKIELCRF 205 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~--~----~~~~~~~~~~~~~v~~~~~ 205 (392)
-|.++.++. .+........+-..-+.|+||||++.|+.+.. .+.|.-|++.. + +..........+..-.++.
T Consensus 142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence 133444443 34444433333445678999999988777754 36788787652 1 1111122122345667778
Q ss_pred cCCCCcceEEEEEEeCCc-cEEEEEeCCCceeeeeecccCCCcEEEEEC-CCCCEEEEEe
Q 016257 206 SKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGS 263 (392)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 263 (392)
..+|.. -..+..+ +.|..|+.. ++.+.........+++++|- |+.+.|++.+
T Consensus 221 DadG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 221 DADGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred eCCCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 888873 1133333 389999998 88888887766777888884 4555555544
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.0087 Score=54.02 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=85.0
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---CcceEE-----EEec
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIEL-----CRFS 206 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~v~~-----~~~~ 206 (392)
.|++|+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... .+.... ...|.. ..+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccC
Confidence 47777753 44444433333789999999865 45566689999999986333 221111 111211 1222
Q ss_pred CCCCcceEEEEEEeCCccEEEEE-eCCCceeeeeecccCCCcE----------EEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257 207 KDGTKPFLFCTVQRGDKALLAVY-DISTWNKIGHKRLLRKPAS----------VLSISLDGKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~v~----------~~~~s~~~~~l~~~~~dg~i~iwd~~~ 275 (392)
.+|- ++. ..++.+.+. +.........+........ ...++.+....+....++.+.+.+-..
T Consensus 137 ~~Gi------vvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 137 KNGI------VVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred CCCE------EEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 2332 122 233334333 2221111111110000000 022334444444444445555444322
Q ss_pred ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
.+. + .. .+++..++.||+|++||.-..+|.+.+...+.
T Consensus 210 ~~~---i--~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 210 FKQ---I--DS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ccc---c--cC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 211 1 11 46899999999999999999999988876543
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0034 Score=54.96 Aligned_cols=182 Identities=11% Similarity=0.093 Sum_probs=103.6
Q ss_pred CCEEEEEeC---------C-CcEEEEeCCCC----ceeec--ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257 124 GSRFAAGGV---------D-GHLRIMHWPSL----RIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (392)
Q Consensus 124 ~~~l~~~~~---------d-g~i~i~d~~~~----~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 187 (392)
..+|++|+. . |.|.++++... ..+.. .....++|++++-- .+. |+++. ++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 457777652 2 88999999874 12211 12334678888766 344 44443 4789999998877
Q ss_pred -eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeee--cccCCCcEEEEECCCCCEEEEEe
Q 016257 188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHK--RLLRKPASVLSISLDGKYLAMGS 263 (392)
Q Consensus 188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~ 263 (392)
....-..+....+.++.... .. ++.+.....+.++..+. ...+..+ ......++++.+-++++.++.+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~--~~-----I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFK--NY-----ILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEET--TE-----EEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred cchhhheecceEEEEEEeccc--cE-----EEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 44433333333566665553 34 56666666666664332 2212222 22245678888886667999999
Q ss_pred CCCcEEEEecCC-------ce-eeeeeeccccCcceEEE---EEeeC--C------CeEEEEeCCCeEEEE
Q 016257 264 KDGDICVVDVKK-------ME-INHWSKRLHLGTSIALV---EFCPT--Q------RVVLTASKEWGAMIT 315 (392)
Q Consensus 264 ~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~i~~~---~~s~~--~------~~l~~~~~dg~i~iw 315 (392)
.+|.+.++.... ++ .+......|.+..|+++ ++.|. + ..++.++.+|.|...
T Consensus 192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999998763 22 22222234446778888 55552 2 248888899999844
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.014 Score=50.02 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=124.7
Q ss_pred EEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257 68 TIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (392)
Q Consensus 68 ~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 146 (392)
...|.++...|+ +--..+.|.-|+..+++... +. ..+.+.++..-..+..|+++. .-+.+++.+++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~--------~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP--------SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE--------CCCCcccceeecCCCeEEEEc--cccEEEeccCCce
Confidence 345777776444 44567788888887554211 11 123334444434444555543 3366777665554
Q ss_pred eecccC---C--CCcEEEEEecCCCCeEEEEcC-----------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257 147 ILDEPK---A--HKSVLDMDFSLDSEFLATTST-----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (392)
Q Consensus 147 ~~~~~~---~--~~~i~~i~~~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (392)
...+.. . ....+.+...|+|.+.++... -|.++.+|. .+...+.+..+ -..-+.++||||++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECCCCC
Confidence 222111 1 125678889999987665433 133444443 44444444332 22467899999998
Q ss_pred cceEEEEEEeCCccEEEEEeCCC--cee-----eeeecccCCCcEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeee
Q 016257 211 KPFLFCTVQRGDKALLAVYDIST--WNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWS 282 (392)
Q Consensus 211 ~~~~~~~~~~~~d~~i~v~d~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 282 (392)
.+ .++-+..+.|.-|++.. +.. ........+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+
T Consensus 176 tl----y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 176 TL----YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred EE----EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 63 35556668888887762 111 111222334455677777888876554444 89999988 7777766
Q ss_pred eccccCcceEEEEEee-CCCeEEEEe
Q 016257 283 KRLHLGTSIALVEFCP-TQRVVLTAS 307 (392)
Q Consensus 283 ~~~~~~~~i~~~~~s~-~~~~l~~~~ 307 (392)
.. + ...+++++|-- +.+.|+..+
T Consensus 251 ~l-P-~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 251 KL-P-VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EC-C-CCCCccceEeCCCcCEEEEEe
Confidence 43 3 36788888854 445444433
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0028 Score=60.70 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCceeecccCCCC-cEEEEEecC-----CCCeEEEEcCCCcEEEEECCCCe--eeEE-E
Q 016257 123 DGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGV--AWTF-L 192 (392)
Q Consensus 123 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~~~~--~~~~-~ 192 (392)
+.++|+.- .....|+-.|++.|+.+.....+.. +|..++-.. +....+.|-.+..+..||.|-.. .+.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444432 3457899999999999887776654 355543321 12345566677889999998643 2211 1
Q ss_pred -ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257 193 -TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (392)
Q Consensus 193 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 271 (392)
.-.......|++-+.+|. ++.|+.+|.|++||--..+....+.+.+.+|..+..+.||++|++.+. ..|.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 112334578888888888 799999999999995443444455667889999999999999887764 567777
Q ss_pred ec
Q 016257 272 DV 273 (392)
Q Consensus 272 d~ 273 (392)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 75
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.0059 Score=50.07 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=95.5
Q ss_pred cEEEEEecCCC-CeEEEEcCCCc-EEEEECCCCeeeEEEecCCCcc-eEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 156 SVLDMDFSLDS-EFLATTSTDGS-ARIWKTEDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 156 ~i~~i~~~~~~-~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
....|+++|.. .-++.+-.-|+ ..++|....+...++....+.. .-.=.|||||.++|..---.....|.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 34567888854 44666666665 6789998877766665432211 223469999997321000011234789999998
Q ss_pred Cc-eeeeeecccCCCcEEEEECCCCCEEEEEeC------------------CCcEEEEecCCceeeeeeec---cccCcc
Q 016257 233 TW-NKIGHKRLLRKPASVLSISLDGKYLAMGSK------------------DGDICVVDVKKMEINHWSKR---LHLGTS 290 (392)
Q Consensus 233 ~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~---~~~~~~ 290 (392)
.+ +.+.++..|.-....+.+.+||+.++.+.. .-++.+.|..+++++..... .+ .-.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-~lS 227 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-QLS 227 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh-hcc
Confidence 53 345667777777788999999999987643 11344555555555443221 22 457
Q ss_pred eEEEEEeeCCCeEEEEeCC
Q 016257 291 IALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 291 i~~~~~s~~~~~l~~~~~d 309 (392)
|..++..+||+.++.+-..
T Consensus 228 iRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred eeeeeeCCCCcEEEEEEee
Confidence 8888888888876665443
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.71 E-value=0.0031 Score=44.15 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=67.0
Q ss_pred EEEEEecC---CC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 157 VLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 157 i~~i~~~~---~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
|+++++.. || +.|++|+.|..|++|+-. ..+..+... +.+.+++-...+. ++.+-.+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~--~~v~~L~~~~~~~------F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET--DKVTSLCSLGGGR------FAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc--cceEEEEEcCCCE------EEEEecCCEEEEEeCc
Confidence 55666544 33 579999999999999853 566666543 3688888777765 5777889999999864
Q ss_pred CceeeeeecccCCCcEEEEECC---CC-CEEEEEeCCCcEEE
Q 016257 233 TWNKIGHKRLLRKPASVLSISL---DG-KYLAMGSKDGDICV 270 (392)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~i 270 (392)
. .+-..+. +..+.++++.. || .-|++|-.+|.|-+
T Consensus 72 ~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 Q--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3 2222222 33455665543 33 46889988998753
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.70 E-value=0.045 Score=51.23 Aligned_cols=153 Identities=9% Similarity=0.085 Sum_probs=91.5
Q ss_pred CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC---CCCEEEEEe------CCCcEEEEeCCCCce
Q 016257 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGG------VDGHLRIMHWPSLRI 146 (392)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~i~d~~~~~~ 146 (392)
..++.++.++.+.-.|.++++...+....... .. ..+.-+| ++ .++++. .+|.|..+|.++|+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~---~~---~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYK---AG---YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccccc---cc---ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 46777788999999999998876554321110 00 0111112 34 455543 268899999999887
Q ss_pred eecccCCCC-------------------------------cE-EEEEecCCCCeEEEEcCC-----C-----------cE
Q 016257 147 ILDEPKAHK-------------------------------SV-LDMDFSLDSEFLATTSTD-----G-----------SA 178 (392)
Q Consensus 147 ~~~~~~~~~-------------------------------~i-~~i~~~~~~~~l~~~~~d-----~-----------~i 178 (392)
+-+...... .+ ..+++.|...+++.+..+ + +|
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 654322110 11 134667766666665522 2 57
Q ss_pred EEEECCCCeeeEEEecCCCc--------ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257 179 RIWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (392)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 237 (392)
.-.|+++++..-.++..+.. ...-+....+|+. .-.++.+..+|.+++.|.++++.+
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP--RKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcE--EEEEEEeCCCceEEEEECCCCcee
Confidence 77888999888777643221 1112223345552 112688999999999999999875
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.67 E-value=0.00017 Score=40.01 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=31.9
Q ss_pred EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE
Q 016257 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (392)
Q Consensus 56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~ 91 (392)
...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667889999999999999999999999999995
No 376
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.67 E-value=0.032 Score=48.72 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=89.8
Q ss_pred EEecCCCCEEEEEeC-C--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257 118 LSFSVDGSRFAAGGV-D--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (392)
Q Consensus 118 ~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 194 (392)
=+|.+||++|+.++. | ..+.+.|+++++..+-............++|+.+.++....+..++-.|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 467889987766654 4 4577778888877654333323333566788888877665567899999998876555444
Q ss_pred CCCcceEEEEec--CCCCcceEEEEEEeCCc-------------------cEEEEEeCCCceeeeeecccCCCcEEEEEC
Q 016257 195 NSDEKIELCRFS--KDGTKPFLFCTVQRGDK-------------------ALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (392)
Q Consensus 195 ~~~~~v~~~~~~--~~~~~~~~~~~~~~~~d-------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s 253 (392)
+ ...+....|. .++.. +. .+.....+ ..|.-.|+.+++....+. ....+.-+.||
T Consensus 121 p-~~~~g~gt~v~n~d~t~-~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fs 196 (386)
T PF14583_consen 121 P-DDWKGYGTWVANSDCTK-LV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFS 196 (386)
T ss_dssp --TTEEEEEEEEE-TTSSE-EE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEE
T ss_pred C-cccccccceeeCCCccE-EE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccC
Confidence 4 3345445554 33443 11 12222222 346666777776543333 45677889999
Q ss_pred CCCCEEEEEeCCC-----cEEEE--ecCCceeeeeeeccccCcceEEEEEeeCCCeEEE
Q 016257 254 LDGKYLAMGSKDG-----DICVV--DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT 305 (392)
Q Consensus 254 ~~~~~l~~~~~dg-----~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 305 (392)
|....+++=+..| .-+|| +.............. ...+..=-|.|||..|.-
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEE
Confidence 9655444433322 12555 444333322222222 445666678999986654
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.67 E-value=0.0045 Score=43.38 Aligned_cols=103 Identities=12% Similarity=0.128 Sum_probs=62.9
Q ss_pred eEEEEecC---CC-CEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257 115 QKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (392)
Q Consensus 115 v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 190 (392)
|+++++.. || +.|++|+.|..|++|+-+ +.+.++ .....|.++.-... ..++.+..+|+|-+|+-.. .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 45666554 33 579999999999999743 344333 34456777776665 5688899999999998532 222
Q ss_pred EEecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEE
Q 016257 191 FLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLA 227 (392)
Q Consensus 191 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~ 227 (392)
..+. ...+.++++.. ++... .-++++-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~--~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGV--PELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCc--eEEEEEecCCeEE
Confidence 3332 22355554433 33110 0157777777664
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0016 Score=57.77 Aligned_cols=148 Identities=17% Similarity=0.124 Sum_probs=100.9
Q ss_pred CCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE--EEEEEeCCccEEEEEeCCCcee--eee
Q 016257 165 DSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWNK--IGH 239 (392)
Q Consensus 165 ~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~v~d~~~~~~--~~~ 239 (392)
+.++|+ ++.....++-.|++.|+.+..+..+.. |.-+.+.|+.+..-+ -..+.|-.++.|.-||.|-... +..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 444443 455556788999999999999986654 777888887653111 1135566788899999984332 212
Q ss_pred eccc----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257 240 KRLL----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (392)
Q Consensus 240 ~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 315 (392)
...+ ...-.|.+-..+| ++++|+.+|.|++||- .+........+- +.+|..+..+.+|++|++.+.. .+.+-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc~t-yLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILATCKT-YLLLI 497 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEEeccc-EEEEE
Confidence 2222 2345566655555 8899999999999997 555444444555 8899999999999998877654 66666
Q ss_pred Eee
Q 016257 316 KLT 318 (392)
Q Consensus 316 ~~~ 318 (392)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 654
No 379
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.63 E-value=0.032 Score=47.61 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=124.8
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--- 150 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--- 150 (392)
.++.|+.|+.+| +.+++........... +...|..+...++-+.|++-+ |+.++++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence 577899999999 9999983332222221 233589999999877777765 699999998754433211
Q ss_pred -----------cCCCCcEEEEE--ecCCC-CeEEEEcCCCcEEEEECCCC-----eeeEEEecCCCcceEEEEecCCCCc
Q 016257 151 -----------PKAHKSVLDMD--FSLDS-EFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 151 -----------~~~~~~i~~i~--~~~~~-~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
......+...+ -...+ ..|+++. ..+|.+|..... +..+.+... ..+..++|.++ .
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~~--~ 150 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLGN--K 150 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeCC--E
Confidence 11122344444 11233 3444444 468888887653 344555433 46889999833 2
Q ss_pred ceEEEEEEeCCccEEEEEeCCCceeeeeeccc------------CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee
Q 016257 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (392)
Q Consensus 212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 279 (392)
++.+. .....+.|+.++......... ..++..+.. +++.+|++- |..-.+.|. .|+..
T Consensus 151 -----i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~ 220 (275)
T PF00780_consen 151 -----ICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPS 220 (275)
T ss_pred -----EEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcC
Confidence 33333 445788888866543322111 123334444 345666543 333444454 33333
Q ss_pred e-eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 280 H-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 280 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
+ ....- ...+.++++. ..+|++.+.+ .|.||++..+.-
T Consensus 221 r~~~i~W--~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 221 RKSTIQW--SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred cccEEEc--CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcE
Confidence 2 11111 4466677773 4578777665 699999987643
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.54 E-value=0.00029 Score=38.96 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=31.8
Q ss_pred eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (392)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 272 (392)
+...+..+...+.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4445566778899999999999999999999999996
No 381
>PRK10115 protease 2; Provisional
Probab=97.52 E-value=0.072 Score=51.66 Aligned_cols=197 Identities=6% Similarity=-0.052 Sum_probs=107.0
Q ss_pred CeEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC------CcEEEEE
Q 016257 114 PQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK 182 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd 182 (392)
.+..+.++||+++|+.+.. ...|++.|+.+++.+........ ..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677899999998887542 23588999988864332222222 459999999876655432 3577888
Q ss_pred CCCC--eeeEEEecCCCcceE-EEEecCCCCcceEEEEEEeCCccEEEEEeCC--CceeeeeecccCCCcEEEEECCCCC
Q 016257 183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKIGHKRLLRKPASVLSISLDGK 257 (392)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~ 257 (392)
+.++ +....+..... ... ....+.++++++ .-.....++.+.+++.. .++....+.........+. +.. .
T Consensus 206 lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 280 (686)
T PRK10115 206 IGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-H 280 (686)
T ss_pred CCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEE--EEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-C
Confidence 8877 33333332222 233 333344676533 34555566789999853 3332212222122222222 222 3
Q ss_pred EEEEEeCC----CcEEEEecCC-ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 258 YLAMGSKD----GDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 258 ~l~~~~~d----g~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
.++.-+.. ..|...++.. ++....+ .......|..+.+. .+.++++...+|.-+++-+..
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEE-CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcC
Confidence 33333322 2344445542 2222222 22213478888887 445667777788888877764
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00016 Score=56.97 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=74.5
Q ss_pred EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCc
Q 016257 169 LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPA 247 (392)
Q Consensus 169 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v 247 (392)
+..-+.|+.++-++++..+....-.........-+.+ +.. ++.++.+|.|.+|............ .....+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~-----~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAK-----LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cce-----EEeecccceEEEecCCccchHHHhhhcccccc
Confidence 4445567888877776543221111111111111111 222 7889999999999887322211111 111222
Q ss_pred EE-EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE--eCCCeEEEEEee
Q 016257 248 SV-LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA--SKEWGAMITKLT 318 (392)
Q Consensus 248 ~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~iw~~~ 318 (392)
.+ +.--.++.+..+++.||.|+.|+++-.+.+-.. ..|...++..+..+..++.++.+ |.|..++.|++.
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 22 233345668899999999999999988877654 34411344444444444444444 445555555544
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.44 E-value=0.051 Score=46.44 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEEC-CCCeeeE
Q 016257 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWT 190 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~-~~~~~~~ 190 (392)
.+.+..+.-++||++++++..-....-||.-...-..........|.+|.|.|++.+.+.+ ..|.|+.=+. ...+...
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 4678899999999988887654445566643222222223344689999999998876655 7788888772 2222211
Q ss_pred E--Eec-CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee---eeecccCCCcEEEEECCCCCEEEEEeC
Q 016257 191 F--LTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI---GHKRLLRKPASVLSISLDGKYLAMGSK 264 (392)
Q Consensus 191 ~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 264 (392)
. ... .....+..++|.+++. +.+++..+.+. .....++.- ............+.|.++.+-++.| .
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~------~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNE------IWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-------EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccCCcccCceeeEEEEecCCCC------EEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 1 111 1122378899999877 34455555443 333334332 2222334567888887665555554 5
Q ss_pred CCcEEEE
Q 016257 265 DGDICVV 271 (392)
Q Consensus 265 dg~i~iw 271 (392)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7876554
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.42 E-value=0.14 Score=49.64 Aligned_cols=291 Identities=11% Similarity=0.055 Sum_probs=151.4
Q ss_pred CCCeeEEEEcCCC------CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257 63 EGDPMTIAVNPSG------DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (392)
Q Consensus 63 ~~~v~~~~~sp~~------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (392)
...|.|+.++|-| ++++.|..+..+.+.-................ .-...|.-..+--|..+|.++..||.+
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~--~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE--IIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC--ccchheeeEEeeccceEEEEEcCCceE
Confidence 5689999999842 27888888776655544332211111111111 112455566666678899999999998
Q ss_pred EEEeCC--CCceeecc--cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257 137 RIMHWP--SLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (392)
Q Consensus 137 ~i~d~~--~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (392)
.-|.+. +++..-.. .-...++.--.|+..++.-+.+..|+-..+|.-+..-....+.... .-..+.|+.+.-..
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke--v~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE--VNHMCPFNSDAYPD 685 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH--hhhhcccccccCCc
Confidence 776554 44332111 2233466666677666555555556767777654332222222111 11222333332211
Q ss_pred eEEEEEEeCCccEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCC--------------CcEEEEecCCc
Q 016257 213 FLFCTVQRGDKALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD--------------GDICVVDVKKM 276 (392)
Q Consensus 213 ~~~~~~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~ 276 (392)
. ++. ...+.+.+.-+..-+.+ ++ -......+.+++.+....+++.+.. ..++++|-.+.
T Consensus 686 ~---l~~-~~~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf 760 (1096)
T KOG1897|consen 686 S---LAS-ANGGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF 760 (1096)
T ss_pred e---EEE-ecCCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence 1 222 23344555544432221 22 1223455667777644444443321 24778888887
Q ss_pred eeeeeeeccc--cCcceEEEEEeeC-CCeEEEEeC----------CCeEEEEEeecCccccceee---eeeeeeeeeece
Q 016257 277 EINHWSKRLH--LGTSIALVEFCPT-QRVVLTASK----------EWGAMITKLTVPADWKEWQI---YSLLLALFLASA 340 (392)
Q Consensus 277 ~~~~~~~~~~--~~~~i~~~~~s~~-~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~ 340 (392)
+......... ....|.++.|..| +.+++.|.. .|.|.++.+.....+...+. .-.+..+..-.
T Consensus 761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn- 839 (1096)
T KOG1897|consen 761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN- 839 (1096)
T ss_pred eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC-
Confidence 7665443222 0234555668887 667777753 38888888887444332211 11112221112
Q ss_pred EEEEeeecceeeeeccccccccc
Q 016257 341 VVFYIFFENSDSFWNFPVARNQH 363 (392)
Q Consensus 341 ~~~~~~~d~~i~~W~~~~~~~~~ 363 (392)
-.+.++....|++++..+++.+.
T Consensus 840 gkllA~In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 840 GKLLAGINQSVRLYEWTTERELR 862 (1096)
T ss_pred CeEEEecCcEEEEEEccccceeh
Confidence 23445567889999998886553
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.41 E-value=0.054 Score=44.80 Aligned_cols=185 Identities=14% Similarity=0.164 Sum_probs=115.7
Q ss_pred CCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeecccCCCC-cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 189 (392)
.....+.|..+|.++-+.+.-| .|+.+|+++++......-... --..++... ++.....-.++...+||..+.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 3456788877887777777655 699999999987654433222 223344442 344445567899999999999998
Q ss_pred EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeC
Q 016257 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK 264 (392)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~ 264 (392)
.++.-..+ =..++ .++.. ++.+.....|..+|.++.+....+.... ..++.+.+- +|...|=.-.
T Consensus 124 ~~~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 124 GTFPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp EEEE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred EEEecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 88876543 35565 55665 6677778899999998877665544321 245556664 5666555556
Q ss_pred CCcEEEEecCCceeeeeeecc---------c----cCcceEEEEEeeCCCeEEEEeC
Q 016257 265 DGDICVVDVKKMEINHWSKRL---------H----LGTSIALVEFCPTQRVVLTASK 308 (392)
Q Consensus 265 dg~i~iwd~~~~~~~~~~~~~---------~----~~~~i~~~~~s~~~~~l~~~~~ 308 (392)
...|...|..+|++...+... . ...-.+.+++.|....|...+.
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 677888899999887655210 0 0245889999998776555553
No 386
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0034 Score=55.81 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=99.6
Q ss_pred ecCCCCEEE-EEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCe-------EEEEcCCCcEEEEECCCCee--e
Q 016257 120 FSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-------LATTSTDGSARIWKTEDGVA--W 189 (392)
Q Consensus 120 ~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-------l~~~~~d~~i~vwd~~~~~~--~ 189 (392)
...+.++|+ ++.....++-.|++.|+.+.....+.. |.-+.+.|+.+. -+.|-.|..|.-||.+-... +
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 334444443 455556788899999998876665554 777778776532 23455678899999874322 1
Q ss_pred EEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC
Q 016257 190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (392)
Q Consensus 190 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 266 (392)
...+.+ ......|.+-..+|. ++.++.+|.|++||.-.......+.+...+|..+..+.+|++|+..+ +.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred eeeeccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence 111111 223456677677776 79999999999999844444456677889999999999999988766 45
Q ss_pred cEEEEecC
Q 016257 267 DICVVDVK 274 (392)
Q Consensus 267 ~i~iwd~~ 274 (392)
.+.+.++.
T Consensus 493 yLlLi~t~ 500 (644)
T KOG2395|consen 493 YLLLIDTL 500 (644)
T ss_pred EEEEEEEe
Confidence 67776653
No 387
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.31 E-value=0.13 Score=47.06 Aligned_cols=123 Identities=8% Similarity=0.067 Sum_probs=72.2
Q ss_pred CCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEEeCCccc-eeeccccCCCCCCCCC--eEEEEecCCCCEEEEEeCC
Q 016257 61 ESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGP--QKCLSFSVDGSRFAAGGVD 133 (392)
Q Consensus 61 ~h~~~v~~~~~sp~----~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d 133 (392)
|.-+.|..+.|.|- ...|++......|.||.+...... .+........+...-+ -..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 44567999999984 334555566777999998632211 1111111111111111 2467899988888776655
Q ss_pred CcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEEC
Q 016257 134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT 183 (392)
Q Consensus 134 g~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~ 183 (392)
..-.++++.. ...+..-....+-|.|.+|.+||+.|+++-. .=.-++||-
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 4445556543 2333333456678999999999998776532 234567774
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.29 E-value=0.081 Score=44.37 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=90.0
Q ss_pred CeEEEEecCCCCEEEEEe---CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEE-CCCCeee
Q 016257 114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW 189 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd-~~~~~~~ 189 (392)
.+.+.+++++++.++... ....++++.. +....... ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678999999999877665 2234555443 33322222 223678889999987777666666666663 3333222
Q ss_pred -EEEecCCCc-ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC---Cc------eeeeeecccCCCcEEEEECCCCCE
Q 016257 190 -TFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW------NKIGHKRLLRKPASVLSISLDGKY 258 (392)
Q Consensus 190 -~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~---~~------~~~~~~~~~~~~v~~~~~s~~~~~ 258 (392)
..+...... .|..+.++|||.++.+ +.....++.|.+--+. .+ ............++.++|.+++.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 222222121 7999999999998432 4445556777776543 12 111112223467899999999988
Q ss_pred EEEEeCCC
Q 016257 259 LAMGSKDG 266 (392)
Q Consensus 259 l~~~~~dg 266 (392)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 77766543
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.25 E-value=0.12 Score=45.34 Aligned_cols=238 Identities=10% Similarity=0.060 Sum_probs=117.1
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeC-C-------
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D------- 133 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d------- 133 (392)
..+.|+|.|||+.+++ ...|.|++++ ..+.....+................++++|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4789999999877665 6799999998 3333211111111112234567899999994 334444332 1
Q ss_pred -CcEEEEeCCCC-------ceee-cccC---CCCcEEEEEecCCCCeEEEEcCCC-------------cEEEEECCCCe-
Q 016257 134 -GHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTDG-------------SARIWKTEDGV- 187 (392)
Q Consensus 134 -g~i~i~d~~~~-------~~~~-~~~~---~~~~i~~i~~~~~~~~l~~~~~d~-------------~i~vwd~~~~~- 187 (392)
..|.-|....+ +.+. .... ....-..|.|.|||.+.++.+..+ .|.-.+.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 13443444332 1111 1111 122456799999997766655332 23222321 11
Q ss_pred ------------eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc--cEEEEEeCCCce------------------
Q 016257 188 ------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYDISTWN------------------ 235 (392)
Q Consensus 188 ------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--~~i~v~d~~~~~------------------ 235 (392)
....+..... ....++|+|....++ ..-.+.+ ..|.+. ..+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~---~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLW---AADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEE---EEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-E
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEE---EEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcc
Confidence 1112222223 356789999833322 1222222 223322 1111
Q ss_pred -----------eeeeecccCCCcEEEEECC-------CCCEEEEEeCCCcEEEEecCCceeee-e--eeccccCcceEEE
Q 016257 236 -----------KIGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINH-W--SKRLHLGTSIALV 294 (392)
Q Consensus 236 -----------~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~-~--~~~~~~~~~i~~~ 294 (392)
+...+. +...+..+.|.. .|.++++.-..+.|....++...... . +.... ...+..+
T Consensus 234 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~r~~~v 311 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGF-GGRPRDV 311 (331)
T ss_dssp CTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTS-SS-EEEE
T ss_pred ccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccC-CCCceEE
Confidence 111111 223455666653 34566666556778888887543222 1 11222 4479999
Q ss_pred EEeeCCCeEEEEeCCCeEE
Q 016257 295 EFCPTQRVVLTASKEWGAM 313 (392)
Q Consensus 295 ~~s~~~~~l~~~~~dg~i~ 313 (392)
++.|||.++++...+|.|.
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888774
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.009 Score=57.77 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=73.4
Q ss_pred CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (392)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 153 (392)
.+..++.|+..|.+...|....-.. +. ......++|++++|+.+|..++.|-.+|.|.+||+..++....+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~----~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LH----QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hh----cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 4557888888998888887654211 11 11124679999999999999999999999999999988877665554
Q ss_pred CC---cEEEEEecCCCCeEEEEcCCCcEEEEEC
Q 016257 154 HK---SVLDMDFSLDSEFLATTSTDGSARIWKT 183 (392)
Q Consensus 154 ~~---~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 183 (392)
.. .+..+.+..++..++++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 3444555566667888877776 5654
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.22 E-value=0.17 Score=49.35 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=117.3
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC-CCCCeEEEEec----------------CCCCEEEEEeCCCcEE
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFS----------------VDGSRFAAGGVDGHLR 137 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s----------------~~~~~l~~~~~dg~i~ 137 (392)
+..|+.++.++.|.-.|..+++...++......... .....+.+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777788888888898888876665432211000 00112223332 1345788888999999
Q ss_pred EEeCCCCceeecccCCCCcE-------------EEEEecC--CCCeEEEEcC----------CCcEEEEECCCCeeeEEE
Q 016257 138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL 192 (392)
Q Consensus 138 i~d~~~~~~~~~~~~~~~~i-------------~~i~~~~--~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~ 192 (392)
-.|.++|+.+..+.. .+.+ ..+.-.| .+..+++++. +|.|+-+|.++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998865422 1111 1112223 2345666642 588999999999988776
Q ss_pred ecCCC--------cc--------e-EEEEecCCCCcceEEEE-------------EEeCCccEEEEEeCCCceeeeeecc
Q 016257 193 TRNSD--------EK--------I-ELCRFSKDGTKPFLFCT-------------VQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 193 ~~~~~--------~~--------v-~~~~~~~~~~~~~~~~~-------------~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
..... +. + ..+++++....+|+-.. ......+.|.-.|.++++..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 43110 00 0 12334443332221000 0011245677788888887655543
Q ss_pred cCCC---------cEEEEECC-CCC---EEEEEeCCCcEEEEecCCceeeee
Q 016257 243 LRKP---------ASVLSISL-DGK---YLAMGSKDGDICVVDVKKMEINHW 281 (392)
Q Consensus 243 ~~~~---------v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~ 281 (392)
.... ..-+.+.. +|+ .++.++.+|.++++|.++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 2211 11122322 553 789999999999999999987654
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.048 Score=45.27 Aligned_cols=163 Identities=10% Similarity=0.060 Sum_probs=106.3
Q ss_pred cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (392)
Q Consensus 151 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 230 (392)
.+.+..+.++.|+|+.+.|++......-.|+=..+|+.++++....-.....+.+..++.+ .++--.++.+.++-
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-----vi~dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-----VIVDERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-----EEEehhcceEEEEE
Confidence 3445569999999999998888777777777667888888876544344567888888875 67777788888877
Q ss_pred CCCceeeee----------ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee--eeccc------cCcceE
Q 016257 231 ISTWNKIGH----------KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--SKRLH------LGTSIA 292 (392)
Q Consensus 231 ~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~------~~~~i~ 292 (392)
+........ ....+.....++|+|..+.|..+-+..-+.||.......... ....+ .-..|+
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 664422111 111145677899999999999988887788887664331100 00011 023577
Q ss_pred EEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257 293 LVEFCPTQR-VVLTASKEWGAMITKLT 318 (392)
Q Consensus 293 ~~~~s~~~~-~l~~~~~dg~i~iw~~~ 318 (392)
++.|++... +|+-+.+++.+.-.+..
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecC
Confidence 888887544 55555556555554444
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.13 E-value=0.095 Score=42.01 Aligned_cols=134 Identities=17% Similarity=0.090 Sum_probs=79.6
Q ss_pred cEEEEEecCCCCeEEEEcCC---------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257 156 SVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (392)
...+-..+|+|++++-.-.| |.++.|-.. ..+..+... -..-..++|+.+.+.. ...-+.+..|
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~-v~IsNgl~Wd~d~K~f----Y~iDsln~~V 182 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNC-VGISNGLAWDSDAKKF----YYIDSLNYEV 182 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehh-ccCCccccccccCcEE----EEEccCceEE
Confidence 56677789999985432222 233333321 111111111 1123568888777653 3556667778
Q ss_pred EEEe--CCCcee-----eeeecc----cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257 227 AVYD--ISTWNK-----IGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (392)
Q Consensus 227 ~v~d--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 295 (392)
.-|| ..++.. +..++. .....-.+++..+|++.++.-..++|.-.|..+|+.+..+. .. ...|++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lP-t~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LP-TPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cC-CCceEEEE
Confidence 7777 444432 111111 01112235566688888888888999999999999988874 34 67899999
Q ss_pred Eee
Q 016257 296 FCP 298 (392)
Q Consensus 296 ~s~ 298 (392)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 964
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0031 Score=60.73 Aligned_cols=102 Identities=9% Similarity=0.085 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (392)
Q Consensus 165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 244 (392)
.+..++.|+..|.+...|+...-.......+...+|++++|+.+|.. +..|-.+|.|.+||+..++.++.+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCcceeeeeecC
Confidence 35678889888999999986542212223345668999999999997 7888899999999999999988888777
Q ss_pred CCcEEE---EECCCCCEEEEEeCCCcEEEEec
Q 016257 245 KPASVL---SISLDGKYLAMGSKDGDICVVDV 273 (392)
Q Consensus 245 ~~v~~~---~~s~~~~~l~~~~~dg~i~iwd~ 273 (392)
.+.+.+ .+..++..++++...|. +|.+
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 766655 34456667777777675 5544
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.02 E-value=0.18 Score=43.18 Aligned_cols=279 Identities=13% Similarity=0.111 Sum_probs=123.7
Q ss_pred CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC-CCCCeeEEEEcCCCCeEEEE
Q 016257 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCS 81 (392)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~ 81 (392)
...++.+|.|..+. + -.++|... .++.-...+....... . .... -.-...++.|..+ +.+++
T Consensus 15 t~~~l~dV~F~d~~-~--G~~VG~~g---------~il~T~DGG~tW~~~~--~-~~~~~~~~~l~~I~f~~~-~g~iv- 77 (302)
T PF14870_consen 15 TDKPLLDVAFVDPN-H--GWAVGAYG---------TILKTTDGGKTWQPVS--L-DLDNPFDYHLNSISFDGN-EGWIV- 77 (302)
T ss_dssp -SS-EEEEEESSSS----EEEEETTT---------EEEEESSTTSS-EE--------S-----EEEEEEEETT-EEEEE-
T ss_pred CCCceEEEEEecCC-E--EEEEecCC---------EEEEECCCCccccccc--c-CCCccceeeEEEEEecCC-ceEEE-
Confidence 35688999998433 2 23334331 1455444443332111 0 0110 0123567777543 34444
Q ss_pred eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEE
Q 016257 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDM 160 (392)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i 160 (392)
+..+ + ++...++........... .-.+....+....++..++ ++..|.|+.= .+.++. ..........+..+
T Consensus 78 G~~g-~-ll~T~DgG~tW~~v~l~~---~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~ 150 (302)
T PF14870_consen 78 GEPG-L-LLHTTDGGKTWERVPLSS---KLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDI 150 (302)
T ss_dssp EETT-E-EEEESSTTSS-EE----T---T-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEE
T ss_pred cCCc-e-EEEecCCCCCcEEeecCC---CCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeE
Confidence 4556 3 333333332222211000 0112334444444443333 3445544332 222322 22223344578899
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe-CCCceeee-
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD-ISTWNKIG- 238 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d-~~~~~~~~- 238 (392)
.-++||++++++.......-||--.. .-..........+..+.|.|++. +......+.|+.=+ ....+.-.
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~------lw~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGN------LWMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-------EEEEETTTEEEEEE-TTEEEEE--
T ss_pred EECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCC------EEEEeCCcEEEEccCCCCcccccc
Confidence 99999999988877555567775322 12222233345899999999987 34445788888877 22222211
Q ss_pred ---eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc-ccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 239 ---HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 239 ---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
........+..++|.+++...++|+. |.+ +...+.|+.-+..... ......+.+.|.++.+-++. +.+|.+.-
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~ 300 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLR 300 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEE
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEE
Confidence 12223345789999999888777664 533 4455666543333221 11456889999877555554 46776654
Q ss_pred E
Q 016257 315 T 315 (392)
Q Consensus 315 w 315 (392)
|
T Consensus 301 ~ 301 (302)
T PF14870_consen 301 Y 301 (302)
T ss_dssp E
T ss_pred e
Confidence 4
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.01 E-value=0.043 Score=51.84 Aligned_cols=183 Identities=9% Similarity=-0.001 Sum_probs=88.0
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeecc--cCCCCcEEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeee
Q 016257 123 DGSRFAAGGVD------GHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAW 189 (392)
Q Consensus 123 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~ 189 (392)
++...+.|+.+ ..+..||..+.+..... .......... .-+++..+.|+.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56666777643 34778888776542211 1111122222 22567777787654 4788998766432
Q ss_pred EEEecCCC-cceEEEEecCCCCcceEEEEEEeCCc-----------------------cEEEEEeCCCce--eeeeeccc
Q 016257 190 TFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDK-----------------------ALLAVYDISTWN--KIGHKRLL 243 (392)
Q Consensus 190 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d-----------------------~~i~v~d~~~~~--~~~~~~~~ 243 (392)
..-.-+.. .....++. ++. + .+.|+.+ ..+..||.++.+ .+..+...
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~-I----YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQY-I----YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred ECCCCCcccccccEEEE--CCE-E----EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc
Confidence 21111111 01111221 333 2 2334432 357788877643 22222211
Q ss_pred CCCcEEEEECCCCCEEEEEeCC------CcEEEEecCC-ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC--eEEE
Q 016257 244 RKPASVLSISLDGKYLAMGSKD------GDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--GAMI 314 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i 314 (392)
.... +++ .-+++..+.|+.+ ..+..||..+ .+-...............+.+ +|++.++|+.|+ .+..
T Consensus 454 r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 454 TIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDT 529 (557)
T ss_pred cccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhh
Confidence 1111 122 2356666777654 2467899887 443322111110222222332 788889999887 4555
Q ss_pred EEee
Q 016257 315 TKLT 318 (392)
Q Consensus 315 w~~~ 318 (392)
||..
T Consensus 530 yd~~ 533 (557)
T PHA02713 530 FNVY 533 (557)
T ss_pred cCcc
Confidence 5544
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.99 E-value=0.12 Score=48.79 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=114.5
Q ss_pred CCCeEEEEeCCC------eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------CcEEEEeC
Q 016257 74 SGDDFVCSTTNG------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHW 141 (392)
Q Consensus 74 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~ 141 (392)
.+..++.|+.++ .+..+|..++.... ...+.....-.+++.. ++...++|+.| .++..||.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~------~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS------LAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee------cCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence 455667777663 46677776653211 1111122233444443 45677888888 35778888
Q ss_pred CCCceeecccCCCCcEEEEEe-cCCCCeEEEEcCCC-----cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 142 PSLRIILDEPKAHKSVLDMDF-SLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
.+.+... ...-...=..... .-+|...++|+.|| ++..||.++.+-...-. ............-+..+
T Consensus 357 ~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~i--- 430 (571)
T KOG4441|consen 357 RTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKL--- 430 (571)
T ss_pred CCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEE---
Confidence 7776433 1111111111111 22577888898886 47778877654322211 11122222222222332
Q ss_pred EEEEeCCc------cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCc-----EEEEecCCceeeeee
Q 016257 216 CTVQRGDK------ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-----ICVVDVKKMEINHWS 282 (392)
Q Consensus 216 ~~~~~~~d------~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~ 282 (392)
.+.||.+ ..+..||..+.+- +..+........ ++ .-++.+.+.|+.|+. |..||..+.+.....
T Consensus 431 -Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 431 -YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred -EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 2444422 5678888876532 222222222222 22 236778888887763 788998887755543
Q ss_pred eccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
........+..+.+ +++..+.|+.||.-.+
T Consensus 508 ~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL 537 (571)
T ss_pred cCccccccccEEEE--CCEEEEEecccCcccc
Confidence 22221222222332 6778888888864443
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.0032 Score=36.76 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (392)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 277 (392)
...|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457899999999999999999999999998 443
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.96 E-value=0.17 Score=42.40 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=85.0
Q ss_pred cEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE-eCCC
Q 016257 156 SVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY-DIST 233 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~-d~~~ 233 (392)
.+.+.+++++++.++... .++.-.+|-...+....... ....+....|++++.. ......+....++ +...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~-----W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWV-----WTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCE-----EEEEcCCCceEEEEecCC
Confidence 688999999999877655 22333344334444333332 2226788899999663 2333334444444 3333
Q ss_pred ceee-eeeccc--CCCcEEEEECCCCCEEEEEe---CCCcEEEEecC---Cc--eee-e--eeeccccCcceEEEEEeeC
Q 016257 234 WNKI-GHKRLL--RKPASVLSISLDGKYLAMGS---KDGDICVVDVK---KM--EIN-H--WSKRLHLGTSIALVEFCPT 299 (392)
Q Consensus 234 ~~~~-~~~~~~--~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~--~~~-~--~~~~~~~~~~i~~~~~s~~ 299 (392)
++.. ...... ...|+.+.+||||..+|... .++.|.+--+. .+ ..+ . ...... ...++.++|.++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~ 176 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDD 176 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCC
Confidence 2221 111111 12899999999999887765 34667776543 22 111 1 111111 468999999999
Q ss_pred CCeEEEEeCCCe
Q 016257 300 QRVVLTASKEWG 311 (392)
Q Consensus 300 ~~~l~~~~~dg~ 311 (392)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 987776665433
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.96 E-value=0.045 Score=49.85 Aligned_cols=116 Identities=10% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCeEEEEecCC----CCEEEEEeCCCcEEEEeCC-----CCceeecccCCCC---c--EEEEEecCCCCeEEEEcCCCcE
Q 016257 113 GPQKCLSFSVD----GSRFAAGGVDGHLRIMHWP-----SLRIILDEPKAHK---S--VLDMDFSLDSEFLATTSTDGSA 178 (392)
Q Consensus 113 ~~v~~~~~s~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~---~--i~~i~~~~~~~~l~~~~~d~~i 178 (392)
..|..+.|.|- ...|++.-....|.+|.+. .++.......+.. + -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 46899999984 2244444567889999874 2232222111111 1 2467899998888776665555
Q ss_pred EEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 179 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
.+++++.....-.......+.|.|.+|.+||+++. ++-+..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV----VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV----VAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE----EEeCCeEEEEEecCc
Confidence 66676644433333334556899999999999843 333335567788854
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.94 E-value=0.0037 Score=36.48 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 146 (392)
...|..++|+|..++||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 402
>PRK10115 protease 2; Provisional
Probab=96.91 E-value=0.47 Score=46.22 Aligned_cols=238 Identities=10% Similarity=0.028 Sum_probs=117.0
Q ss_pred CeeEEEEcCCCCeEEEEeCC-----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------
Q 016257 65 DPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------ 133 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 133 (392)
.+..+.++||+++|+.+... ..+++.|+.++....... .. .-..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------~~--~~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------DN--VEPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------cC--cceEEEEeeCCCEEEEEEecCCCCCC
Confidence 46678899999988876432 257788887664211111 11 11469999999877665442
Q ss_pred CcEEEEeCCCC--ceeecccCCCCcEE-EEEecCCCCeEEEEc---CCCcEEEEECC--CCeeeEEEecCCCcceEEEEe
Q 016257 134 GHLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTS---TDGSARIWKTE--DGVAWTFLTRNSDEKIELCRF 205 (392)
Q Consensus 134 g~i~i~d~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~---~d~~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~ 205 (392)
..|+.+++.++ +....+........ .+..+.++++++..+ .++.+.+++.. .+.....+..... ....+.
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~- 276 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLD- 276 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEEEE-
Confidence 35778888777 22222222222233 333344788766443 34578888853 3332222222222 222222
Q ss_pred cCCCCcceEEEEEEe--CCccEEEEEeCCCceeeeeeccc--CCCcEEEEECCCCCEEEEEeCCCcEEE--EecCCceee
Q 016257 206 SKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICV--VDVKKMEIN 279 (392)
Q Consensus 206 ~~~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~i--wd~~~~~~~ 279 (392)
+ .+..++ +.+. .....|...++........+..+ ...+..+.++ .+.++++...+|.-++ ++..+++..
T Consensus 277 ~-~~~~ly---~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~ 351 (686)
T PRK10115 277 H-YQHRFY---LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI 351 (686)
T ss_pred e-CCCEEE---EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence 2 223222 3332 23444555555521111222233 2367777777 3345555666666444 454433332
Q ss_pred eeeeccccCcceEEEEEe--eCCC-eEEEEeC---CCeEEEEEeecC
Q 016257 280 HWSKRLHLGTSIALVEFC--PTQR-VVLTASK---EWGAMITKLTVP 320 (392)
Q Consensus 280 ~~~~~~~~~~~i~~~~~s--~~~~-~l~~~~~---dg~i~iw~~~~~ 320 (392)
. +.... ...+..+.++ +++. ++++.+. -+.+..+++...
T Consensus 352 ~-l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 352 G-IAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred E-ecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2 21111 2223334444 3333 4444332 256666666543
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.2 Score=41.81 Aligned_cols=163 Identities=9% Similarity=0.030 Sum_probs=105.4
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 140 (392)
+-...+.++.|+|+.+.|++......-.|+=...++......... -.....+.+..+|++.++--.++.+.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g------~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG------FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc------cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 344569999999999988887777766666555666554443221 23446688888888777777788888887
Q ss_pred CCCCceeec---------ccCC-CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE---EEecCC------CcceE
Q 016257 141 WPSLRIILD---------EPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT---FLTRNS------DEKIE 201 (392)
Q Consensus 141 ~~~~~~~~~---------~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~------~~~v~ 201 (392)
+........ ...+ ......++|+|....|..+-+-.-+.||.+....... ....+. -..+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 765432211 1122 3478899999988888888777778887765332111 111110 11467
Q ss_pred EEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
++.|++....+ ++.+.+++.+...|...
T Consensus 237 gl~~~~~~~~L----LVLS~ESr~l~Evd~~G 264 (316)
T COG3204 237 GLEFNAITNSL----LVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceecCCCCcE----EEEecCCceEEEEecCC
Confidence 78888776653 56777788888888764
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.0068 Score=48.10 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=63.6
Q ss_pred CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (392)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 153 (392)
+..+++|+.+|.|.+|+............. ....+.+ +.--.++.+..++..||.|+.|+++.++.+...-.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc------ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 457888999999999987633221111110 1122222 222335668889999999999999887776544444
Q ss_pred C-CcEEEEEecCCCCeEEEE--cCCCcEEEEECC
Q 016257 154 H-KSVLDMDFSLDSEFLATT--STDGSARIWKTE 184 (392)
Q Consensus 154 ~-~~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~ 184 (392)
. .++.....+..++.++.+ |.|..++.|++.
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 4 245555555555566665 666666667665
No 405
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.64 E-value=0.81 Score=45.28 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=75.9
Q ss_pred CCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCcc----ceeeccccCCCC----CCCCCeEEEEecCCCCEEEEEeCCC
Q 016257 64 GDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT----DINLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDG 134 (392)
Q Consensus 64 ~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg 134 (392)
.+...++|+| +.+.||.....|...||++..... ...........+ +....-..+.|.++-+.|++++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 4778999999 456899999999999999932211 111111111111 1224456888988888888876 46
Q ss_pred cEEEEeCCCCceee--cccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCC
Q 016257 135 HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTED 185 (392)
Q Consensus 135 ~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~ 185 (392)
.+.++|+++..... ........|.++.-+|. +..++.. ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 78999998776532 22233347999998886 3333332 25788888876
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.035 Score=54.32 Aligned_cols=148 Identities=9% Similarity=-0.062 Sum_probs=90.8
Q ss_pred CCeeEEEEcCCCCeEEEE--eCCCeEEEEEEeCCccceeeccc----cCCCCCCCCCeEEEEecCCCC-EEEEEeCCCcE
Q 016257 64 GDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAK----KMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHL 136 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i 136 (392)
-++..+...+|+...++. +.+-.|..||++.-......... ............++.|+|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666677787654443 33346888998764322211111 111112234567888988432 34566778999
Q ss_pred EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec---CCCcceEEEEecCCCCcc
Q 016257 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKP 212 (392)
Q Consensus 137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 212 (392)
++..+................++++|+|.|+.++.|-..|++.-|... .+....+.. .....|.++.|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 988775443333333344578999999999999999999999988764 332233322 223468899998776653
No 407
>PHA02713 hypothetical protein; Provisional
Probab=96.60 E-value=0.39 Score=45.54 Aligned_cols=218 Identities=8% Similarity=0.033 Sum_probs=99.2
Q ss_pred cEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeEEEecCCCcc-eEEEEec
Q 016257 135 HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEK-IELCRFS 206 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~ 206 (392)
.+..||..+.+......-.... -.+++. -++..++.|+.+ ..+..||.++.+-. .+..-.... -.+++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~- 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAV- 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEE-
Confidence 5678888776543211111111 112222 256667777753 34778888766432 111111101 112222
Q ss_pred CCCCcceEEEEEEeCCc-----cEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeCCC-------------
Q 016257 207 KDGTKPFLFCTVQRGDK-----ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDG------------- 266 (392)
Q Consensus 207 ~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------- 266 (392)
-++.. .+.||.+ ..+..||..+.+ .+..+.........+. -+|+..+.|+.++
T Consensus 350 ~~g~I-----YviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 350 IDDTI-----YAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred ECCEE-----EEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence 23331 2445543 358889987643 2222221111222222 3677777777542
Q ss_pred ----------cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC------eEEEEEeecCcccccee-e-
Q 016257 267 ----------DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW------GAMITKLTVPADWKEWQ-I- 328 (392)
Q Consensus 267 ----------~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~-~- 328 (392)
.+..||..+.+-........ .....-...-+++..+.|+.++ .+..||......+.... +
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 47788888766443221111 1111122233677777777542 35566665411221111 1
Q ss_pred -eeeeeee-eeeceEEEEeeecc--eeeeecccccccccC
Q 016257 329 -YSLLLAL-FLASAVVFYIFFEN--SDSFWNFPVARNQHG 364 (392)
Q Consensus 329 -~~~~~~~-~~~~~~~~~~~~d~--~i~~W~~~~~~~~~~ 364 (392)
.....+. .+.....+.++.++ .+..+|..+.+-...
T Consensus 501 ~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 501 SRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred cccccceeEEECCEEEEEeeecceeehhhcCcccccccch
Confidence 1111122 22333444555666 577777766654433
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.57 E-value=0.38 Score=40.52 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=124.3
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC-----ccceeeccccCCCCCCCCCeEEEEecCCCC------------EE
Q 016257 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGS------------RF 127 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l 127 (392)
..+.|+++|.+.+-++....+...+||.... ....................+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4678999999988787778888999998621 111111111111111234567777764322 35
Q ss_pred EEEeCCCcEEEEeCCCCce-----eecccCC-CCc-EEEEEecC--CCCeEEEEc-CCCcEEEEECCCCeee--EEEecC
Q 016257 128 AAGGVDGHLRIMHWPSLRI-----ILDEPKA-HKS-VLDMDFSL--DSEFLATTS-TDGSARIWKTEDGVAW--TFLTRN 195 (392)
Q Consensus 128 ~~~~~dg~i~i~d~~~~~~-----~~~~~~~-~~~-i~~i~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~~--~~~~~~ 195 (392)
+.+++||+|.-|...-+.. ...+... ... ...+++.. .+.+|+.+. .+++|.+||-.-.+.. ..+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6778999999998532221 1112111 232 34566554 345555544 6789999986432211 011110
Q ss_pred ---CC------------cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECC----
Q 016257 196 ---SD------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISL---- 254 (392)
Q Consensus 196 ---~~------------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~---- 254 (392)
.. -.|+-..-.++... -+.+..-|.|-+||+.- +.++++.. .-..-+.|+..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d-----~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRND-----EVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccc-----cccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhC
Confidence 00 00111111222211 23444557899999874 55554422 223455677765
Q ss_pred --CCCEEEEEeCCCcEEEEecCCceeeeeeeccc----cCcceEEEEEee
Q 016257 255 --DGKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCP 298 (392)
Q Consensus 255 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~ 298 (392)
.|.+|+---.||+|..||..+++.+-.+.... ....++.+.|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 35666665679999999999888665553322 023466777765
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.056 Score=52.99 Aligned_cols=146 Identities=11% Similarity=-0.026 Sum_probs=90.0
Q ss_pred cEEEEEecCCCCeEEEE--cCCCcEEEEECCCCeeeE--------E--EecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257 156 SVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWT--------F--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~~~~~~~--------~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (392)
.|..+...+|+...++. +.+-.|..||+++-..-. . ..........++.|+|.-... .+....|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n----~av~l~d 177 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN----SAVDLSD 177 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch----hhhhccc
Confidence 55666667776654433 334478999987532211 0 001112235677888875432 3566678
Q ss_pred cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec--cccCcceEEEEEeeCCC
Q 016257 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQR 301 (392)
Q Consensus 224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~ 301 (392)
+.|.+..+................++++|+|.|+.++.|-..|++.-|...- +....+.. ......|.++.|-....
T Consensus 178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEeccee
Confidence 8888877664333222223356789999999999999999999999886533 32222211 11147899999988777
Q ss_pred eEEEE
Q 016257 302 VVLTA 306 (392)
Q Consensus 302 ~l~~~ 306 (392)
++++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 66543
No 410
>PHA03098 kelch-like protein; Provisional
Probab=96.51 E-value=0.27 Score=46.49 Aligned_cols=175 Identities=9% Similarity=-0.021 Sum_probs=79.6
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCceeecccC--CCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeee
Q 016257 123 DGSRFAAGGVDG------HLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAW 189 (392)
Q Consensus 123 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~ 189 (392)
++..++.|+.++ .+..||..+.+....... .......+. -+++.++.|+.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666432 577888877654321111 111222222 256677777765 34777888765432
Q ss_pred EEEecCCCcceEEEEecCCCCcceEEEEEEeCC--c----cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEE
Q 016257 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--K----ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAM 261 (392)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d----~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 261 (392)
..-..+....-.+++. -++. + .+.|+. + ..+..||..+.+- +..+....... ++ ...+++..+.
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~-i----Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~ 443 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNL-I----YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVI 443 (534)
T ss_pred eCCCcCcCCccceEEE-ECCE-E----EEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEE
Confidence 2111111101111222 2232 2 233442 1 4688899876432 21111111111 22 2235666666
Q ss_pred EeCC--------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 262 GSKD--------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 262 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
|+.+ ..+.+||..+.+-...............+. -++++++.|+.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 6643 238889988766443221111011111222 266666677654
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=96.30 E-value=0.7 Score=40.67 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=85.9
Q ss_pred CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
...+.++.+.|++.+++++. .|.+..-.-..++.-..........++.+.+.+++.. +..+..|.+.+=..+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~------~~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL------WMLARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE------EEEecCCEEEEccCCC
Confidence 34788999999887766654 4654432112223333334444557899999999883 4445566665322333
Q ss_pred ceeeeeecc----cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-cccCcceEEEEEeeCCCeEEEEeC
Q 016257 234 WNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASK 308 (392)
Q Consensus 234 ~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~ 308 (392)
+..-..... ....+..+.+.|++..++++ .+|.+. .....++.-..... .......+.+.|..+++.++ .+.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 332211111 12457788999988766555 567554 44454443332211 11134677888877766554 556
Q ss_pred CCeEEEEE
Q 016257 309 EWGAMITK 316 (392)
Q Consensus 309 dg~i~iw~ 316 (392)
.|.|.-++
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 77776654
No 412
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.24 E-value=1.1 Score=42.50 Aligned_cols=235 Identities=18% Similarity=0.177 Sum_probs=111.3
Q ss_pred eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-C-----eEEEEEEe
Q 016257 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G-----GCKLFEVY 93 (392)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d-~-----~i~iw~~~ 93 (392)
.+++.||.......-..++.|+.. ......- ..+. +...-.+++.. ++...++|+.| | ++..||..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~--~~~w~~~----a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPK--TNEWSSL----APMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCC--cCcEeec----CCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCC
Confidence 577888876422233445555443 3222110 0111 12223344444 45677888888 3 46667766
Q ss_pred CCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCceeecccCCCCcEEEEEe-cCCCC
Q 016257 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEPKAHKSVLDMDF-SLDSE 167 (392)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~i~~i~~-~~~~~ 167 (392)
..+... .+.+.....-.+++. -+|...++|+.|| ++..||.++.+....-.-.. ....... .-+|+
T Consensus 358 ~~~W~~------~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 358 TNQWTP------VAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGK 429 (571)
T ss_pred CCceec------cCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCE
Confidence 655211 111111111111111 2677788888886 47778877665432211111 2222222 22577
Q ss_pred eEEEEcCCC------cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc-----EEEEEeCCCcee
Q 016257 168 FLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWNK 236 (392)
Q Consensus 168 ~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----~i~v~d~~~~~~ 236 (392)
..++|+.++ ++..||..+++....-.-.....-..++.-.+ .. .+.|+.++ ++..||..+.+-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~-~i-----YvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNG-KI-----YVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECC-EE-----EEECCccCCCccceEEEEcCCCCce
Confidence 777887554 46788887765432211111111112333222 21 35555554 377788776443
Q ss_pred e--eeecccCCCcEEEEECCCCCEEEEEeCCC-----cEEEEecCCcee
Q 016257 237 I--GHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEI 278 (392)
Q Consensus 237 ~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~ 278 (392)
. ..+......+.... -+++..++|+.|| +|..||..+.+-
T Consensus 504 ~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred eEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 2 22222222222222 2566777787775 477777766553
No 413
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.21 E-value=0.0085 Score=56.87 Aligned_cols=210 Identities=14% Similarity=0.118 Sum_probs=113.5
Q ss_pred EeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeC--CccceeeccccCCCCCCCCCeEEEEecC---CCCEEEEEe
Q 016257 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGG 131 (392)
Q Consensus 58 ~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~ 131 (392)
.+++..+.|-.+.|-. +...++ -.-|.+.||++.- ++....+....... ....+.-+.|.| +..++..+-
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p--~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP--YGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc--CCCCcceeeecccccccceeeecc
Confidence 3566778888888832 222222 2335688898753 33222222222111 122334445544 667888888
Q ss_pred CCCcEEEEeCCCCceeecccCCCCcEEEE-----------EecCCCCeEEEEcCCCcEEEEECC-----CCeeeEEEecC
Q 016257 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDM-----------DFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRN 195 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i-----------~~~~~~~~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~ 195 (392)
.++++++.++..... .-+..|...+..+ ..+|||+.++.+..||.++.|.+. ...++..++.|
T Consensus 203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 899999887754332 1122233233222 268999999999999998887653 33455555555
Q ss_pred CCcceEEEEecCCCCc-----ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE------------
Q 016257 196 SDEKIELCRFSKDGTK-----PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY------------ 258 (392)
Q Consensus 196 ~~~~v~~~~~~~~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------ 258 (392)
.+.+-.|.-++..... ...+.+-+...+..+++|....+++. +......+..+. -++|+.
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHH
Confidence 4333333334433221 11222344445677999988877766 222233444444 333332
Q ss_pred EEEEeCCCcEEEEecCC
Q 016257 259 LAMGSKDGDICVVDVKK 275 (392)
Q Consensus 259 l~~~~~dg~i~iwd~~~ 275 (392)
++.-+.++.|.+|.-+.
T Consensus 359 ~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHHhhhHHHHHHhhcch
Confidence 22344577788885443
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.18 E-value=0.41 Score=38.57 Aligned_cols=144 Identities=10% Similarity=-0.016 Sum_probs=83.2
Q ss_pred CCCeEEEEecCCCCEEEEEeCC----------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEE
Q 016257 112 AGPQKCLSFSVDGSRFAAGGVD----------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARI 180 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~v 180 (392)
....+.-..+|+|++ +.|... |.++.|-.. ..+......-.--..++|+.+.+.+. +-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 445677788999988 444321 333333321 11111112122235788998777655 4455667777
Q ss_pred EE--CCCC-----eeeEEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEE
Q 016257 181 WK--TEDG-----VAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL 250 (392)
Q Consensus 181 wd--~~~~-----~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~ 250 (392)
|| ..++ +.+..+... .......++...+|.. .++.-..++|...|..+++.+.+++.....++++
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L-----~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNL-----YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcE-----EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 77 4443 233333221 0112234555555653 3555567889999999999999999888999999
Q ss_pred EECC-CCCEEEEEe
Q 016257 251 SISL-DGKYLAMGS 263 (392)
Q Consensus 251 ~~s~-~~~~l~~~~ 263 (392)
+|-- +-..+++.+
T Consensus 260 cFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 260 CFGGKNLDILYVTT 273 (310)
T ss_pred EecCCCccEEEEEe
Confidence 9963 334444433
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.55 Score=44.41 Aligned_cols=203 Identities=11% Similarity=0.110 Sum_probs=97.8
Q ss_pred CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec-c--cCCCCcEEEE
Q 016257 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-E--PKAHKSVLDM 160 (392)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~--~~~~~~i~~i 160 (392)
--.|+|++..... ..+... ..+.+-.+.|+.+.. |++...+|++++|++-....... . ......|..+
T Consensus 63 ~~~I~If~~sG~l-L~~~~w-------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 63 RPYIRIFNISGQL-LGRILW-------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred ceeEEEEeccccc-hHHHHh-------cCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEE
Confidence 3457888865543 222222 123788899998764 55557899999999853221110 1 1112246666
Q ss_pred EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcce--EEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-ee
Q 016257 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI--ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KI 237 (392)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~ 237 (392)
.+..+|-.+.+ .+|.+.+-.-.......++..-..... .+-...+++..... ++--...-...++-..... ..
T Consensus 134 ~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~--ll~v~~~v~~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 134 RFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI--LLDVDVAVGLHICQVEESRVQL 209 (829)
T ss_pred EEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee--EEeechhhhhcccceecccccc
Confidence 66555533333 345554433222112222222111111 22222222222111 1100000000111111111 11
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
..+......+..+..||+.++|+.-...|.|.+-+.+..+....+.... ..+...++|.-+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-HDPPKQMAWCGND 271 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-CCchHhceeecCC
Confidence 1122223567789999999999999999999999888776555443222 3344466665443
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.13 E-value=0.94 Score=40.52 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=74.3
Q ss_pred CCeeEEEEcCCCCeEEEEe-----------CCC-eEEEEEEeCCccce---eeccccCCCCCCCCCeEEEEecCCCCEEE
Q 016257 64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGATDI---NLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~-----------~d~-~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 128 (392)
..+..|+|.++|+.+++-. ..+ .|.+++-.++.-.. +.... .......+++.+++ ++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------~l~~p~Gi~~~~~G-ly- 85 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------ELSMVTGLAVAVGG-VY- 85 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------CCCCccceeEecCC-EE-
Confidence 4577899999998776642 123 67776644332111 11111 12345789999888 44
Q ss_pred EEeCCCcEEEEeCCCC-----c--eeec-ccC----CCCcEEEEEecCCCCeEEEEcCC-------------------Cc
Q 016257 129 AGGVDGHLRIMHWPSL-----R--IILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GS 177 (392)
Q Consensus 129 ~~~~dg~i~i~d~~~~-----~--~~~~-~~~----~~~~i~~i~~~~~~~~l~~~~~d-------------------~~ 177 (392)
++......++.+.... + .+.. +.. ++.....++|.|||.+.++-+.. |.
T Consensus 86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4444433334344211 1 1211 211 13357789999999876654421 34
Q ss_pred EEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257 178 ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 178 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
|.-++...++. ..+..... ....++|+|++..
T Consensus 166 i~r~~pdg~~~-e~~a~G~r-np~Gl~~d~~G~l 197 (367)
T TIGR02604 166 LFRYNPDGGKL-RVVAHGFQ-NPYGHSVDSWGDV 197 (367)
T ss_pred EEEEecCCCeE-EEEecCcC-CCccceECCCCCE
Confidence 55555544432 33333333 3578999998874
No 417
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.09 E-value=0.66 Score=38.42 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=132.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 192 (392)
..-..++-.|||..-+++...+.|--.|..+++....-.+....-..|..-|||..-++-+.. .|.-.|-++.+. .++
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEe
Confidence 345778888999888888888888888989988765555544566778888998876664433 455556544433 222
Q ss_pred e---cCCCcceEEEEecCCCCcceEEEEEEeC--Cc-------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEE
Q 016257 193 T---RNSDEKIELCRFSKDGTKPFLFCTVQRG--DK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (392)
Q Consensus 193 ~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d-------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 260 (392)
. .+.........|.+.|.. -+++. .- +.|++|+.. ....-..++..|||..-+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~l-----WFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNL-----WFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred ecccccCCCcccceeeCCCccE-----EEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEE
Confidence 2 233445778889999884 22322 11 223333332 233456788899999888
Q ss_pred EEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeece
Q 016257 261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASA 340 (392)
Q Consensus 261 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (392)
+.-.++.|-..|..++..............-..+--+|.|+.-++....+.+..+|-.... |..+..+....
T Consensus 205 aslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s----W~eypLPgs~a---- 276 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS----WIEYPLPGSKA---- 276 (353)
T ss_pred EeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc----ceeeeCCCCCC----
Confidence 8777788888887776432222111112344556567788888887777777777655332 44433333221
Q ss_pred EEEEeeecceeeeecc
Q 016257 341 VVFYIFFENSDSFWNF 356 (392)
Q Consensus 341 ~~~~~~~d~~i~~W~~ 356 (392)
.-.+..-|..-+||--
T Consensus 277 rpys~rVD~~grVW~s 292 (353)
T COG4257 277 RPYSMRVDRHGRVWLS 292 (353)
T ss_pred CcceeeeccCCcEEee
Confidence 1111223777777753
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.05 E-value=0.32 Score=45.93 Aligned_cols=117 Identities=13% Similarity=0.206 Sum_probs=73.4
Q ss_pred eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec--CCCCEEEEEeCCCcE
Q 016257 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAAGGVDGHL 136 (392)
Q Consensus 59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i 136 (392)
+...-..+.-+.-+.-++.-++-+...++.|||...+...... .+...+.|.++.|. |+++.+++.+..+.|
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SFSEDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------eecCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 3333344555555554544444444557999999877632222 12356789999985 588999888889999
Q ss_pred EEEeCC-----C----Cceeec--ccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEEC
Q 016257 137 RIMHWP-----S----LRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (392)
Q Consensus 137 ~i~d~~-----~----~~~~~~--~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~ 183 (392)
.+|.-. . ...+.+ +..+. .+|.+..|.++|.+++.++ ..+.|+|-
T Consensus 99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 998542 1 111111 22233 3788999999997666553 56888874
No 419
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.99 E-value=1.5 Score=41.62 Aligned_cols=251 Identities=13% Similarity=0.114 Sum_probs=123.3
Q ss_pred eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC---CCeEEEEeCC
Q 016257 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCSTTN 84 (392)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---~~~l~~~~~d 84 (392)
.+..++|+...+.+.++|+. |.-|.+.|..+-.+.-++. -+..|.|+..-.. .+..++|-.+
T Consensus 31 vs~~~s~~sn~IdiGIS~S~---------ISsYIi~PTPKLiwsypi~------pt~iV~~~dV~~~~~~~~~~~~glt~ 95 (670)
T PF10395_consen 31 VSDDFSPDSNQIDIGISGSA---------ISSYIIKPTPKLIWSYPIS------PTTIVECCDVLEKSDGKKLYCVGLTE 95 (670)
T ss_pred eecccCCCCceEEEEeccch---------hhheecCCCcceeEeeccC------cCceEEEEEeEecCCCcEEEEEEEee
Confidence 34467888777666665554 5566666654444332222 2456777776432 2244455333
Q ss_pred C-eEEEEEEeCCccceee-----ccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee--ecccCCCC-
Q 016257 85 G-GCKLFEVYGGATDINL-----LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPKAHK- 155 (392)
Q Consensus 85 ~-~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~- 155 (392)
+ .-++-.+......... .......+.-...+-.+.|.++++.+++...+|.|.+||...+... ......+.
T Consensus 96 rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~ 175 (670)
T PF10395_consen 96 RKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI 175 (670)
T ss_pred CCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc
Confidence 3 3444444433100000 0000001123568899999999999999999999999999332211 11111111
Q ss_pred -cEEEEEecC------CCCeEEEEcC-C---CcEEEEECC-CCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257 156 -SVLDMDFSL------DSEFLATTST-D---GSARIWKTE-DGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (392)
Q Consensus 156 -~i~~i~~~~------~~~~l~~~~~-d---~~i~vwd~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (392)
-+++ .|-+ ...++++.+. + -..+++.+. .......+. ...........|.-....+|- +
T Consensus 176 ~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~--l---- 248 (670)
T PF10395_consen 176 NVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQ--L---- 248 (670)
T ss_pred ceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEE--E----
Confidence 1222 2322 1234444443 2 246677771 122222221 011112333334433332221 2
Q ss_pred CccEEEEEeCCCceeeeeeccc----C--CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257 222 DKALLAVYDISTWNKIGHKRLL----R--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (392)
Q Consensus 222 ~d~~i~v~d~~~~~~~~~~~~~----~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 282 (392)
.++.|.+|++...+........ . ..+.++. .|..+.++.+ .+++|++.|+.-...+...
T Consensus 249 ~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 249 SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEF 313 (670)
T ss_pred eCCEEEEEEcCCceEEEEEEechhhccccccceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhh
Confidence 5779999999887665544322 1 1222332 2333333333 3568999998765555444
No 420
>PHA03098 kelch-like protein; Provisional
Probab=95.97 E-value=0.46 Score=44.97 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=69.9
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeE
Q 016257 123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWT 190 (392)
Q Consensus 123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~ 190 (392)
++...+.|+.+ ..+..||..+.+........... -.+++ .-+++.++.|+.+ ..+..||..+.+-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 56677777755 34778888766543211111111 11112 2246666666632 357889987664332
Q ss_pred EEecCCCcceEEEEecCCCCcceEEEEEEeCCc--------cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEE
Q 016257 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLA 260 (392)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--------~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~ 260 (392)
.-..+....-.+++. .++. + .+.|+.+ ..+.+||..+.+- +..+.........+.+ +++.++
T Consensus 421 ~~~~p~~r~~~~~~~-~~~~-i----yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv 492 (534)
T PHA03098 421 GSPLPISHYGGCAIY-HDGK-I----YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYV 492 (534)
T ss_pred cCCCCccccCceEEE-ECCE-E----EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEE
Confidence 111111101112222 2332 2 2334321 2488899876432 2211111112222222 667777
Q ss_pred EEeCC-----CcEEEEecCCcee
Q 016257 261 MGSKD-----GDICVVDVKKMEI 278 (392)
Q Consensus 261 ~~~~d-----g~i~iwd~~~~~~ 278 (392)
.|+.+ +.+.+||..+.+-
T Consensus 493 ~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 493 VGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EcCCcCCcccceeEEEeCCCCEE
Confidence 77654 4688888877654
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.95 E-value=0.79 Score=38.12 Aligned_cols=151 Identities=17% Similarity=0.075 Sum_probs=90.2
Q ss_pred cEEEEEecCCCCeEEEEcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 156 SVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
-...+.|..++.++-+.+.-| .|+.+|+.+++.......+...--..++...+.- ....-.++...+||.++
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l------~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKL------YQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEE------EEEESSSSEEEEEETTT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEE------EEEEecCCeEEEEcccc
Confidence 356788877788888877665 6999999999887776654433334555554432 34556788999999999
Q ss_pred ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc---cCcceEEEEEeeCCCeEEEEeCCC
Q 016257 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH---LGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
.+.+.++... ..-..++ .|++.|+.......|+++|.++.+....+.... .-..++-+.|- +|...|=.=...
T Consensus 120 l~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 120 LKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp TEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred ceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 8888777543 3455666 467777777667789999998877665543221 12234556664 454444333333
Q ss_pred eEEEEE
Q 016257 311 GAMITK 316 (392)
Q Consensus 311 ~i~iw~ 316 (392)
.|..-|
T Consensus 196 ~I~~Id 201 (264)
T PF05096_consen 196 RIVRID 201 (264)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 333333
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.83 E-value=0.2 Score=44.91 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=62.1
Q ss_pred cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC-------------cceEEEEEEeCC
Q 016257 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRGD 222 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~~ 222 (392)
.+.++..+|++++.++...=|.|.++|+.++..++.+++..+..+.-+.....+. ...++.++-...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 5788999999998888777799999999999888888766554433332222211 123444677788
Q ss_pred ccEEEEEeCCCceeeeeec
Q 016257 223 KALLAVYDISTWNKIGHKR 241 (392)
Q Consensus 223 d~~i~v~d~~~~~~~~~~~ 241 (392)
.|.|.||.++.+..+..+.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 8999999999887765544
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=95.77 E-value=1.2 Score=41.38 Aligned_cols=172 Identities=8% Similarity=-0.038 Sum_probs=78.6
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCC--CcEEEEECCCCeeeEEEec
Q 016257 123 DGSRFAAGGVDG-----HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLTR 194 (392)
Q Consensus 123 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~ 194 (392)
++..+++|+.++ .+..||..+++......-.... -.+++ .-++...+.|+.+ ..+..||..+++-... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNM-PS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEEC-CC
Confidence 344556666542 4677888776543221111111 11222 2356677777753 3577888765533221 11
Q ss_pred CCCcceEE-EEecCCCCcceEEEEEEeCCc---cEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257 195 NSDEKIEL-CRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (392)
Q Consensus 195 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~d---~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 268 (392)
...+... ....-++. + .+.|+.+ ..+..||.++.+=. ..+....... ++ ..-+++..+.|+ .+
T Consensus 349 -l~~~r~~~~~~~~~g~-I----YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~ 417 (480)
T PHA02790 349 -LLKPRCNPAVASINNV-I----YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NA 417 (480)
T ss_pred -CCCCCcccEEEEECCE-E----EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ce
Confidence 1111111 11122333 2 2444433 45678887754321 1111111111 22 223566666663 57
Q ss_pred EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
.+||.++.+-.......+.......+ .-+|+..+.||.+
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~ 456 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFY 456 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcC
Confidence 78998876644322111112222222 2377888888765
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.72 E-value=0.57 Score=44.27 Aligned_cols=110 Identities=16% Similarity=0.108 Sum_probs=70.3
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc-CCCCcEEEEEec--CCCCeEEEEcCCCcEEEEECCC-------
Q 016257 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTED------- 185 (392)
Q Consensus 116 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~d~~i~vwd~~~------- 185 (392)
.-+.-|.-++..++-+....+.|||.+.+....+.. ...+.|.+++|. |+++.+++.+-.+.|.++-...
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 334444444444444445679999998877443322 345689999995 5888888888889999886421
Q ss_pred --CeeeEEE--ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257 186 --GVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (392)
Q Consensus 186 --~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~ 232 (392)
-.+++.+ ..+...+|....|.++|.. +.++ ++.+.|+|-.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L------vV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTL------VVGS-GNQLFVFDKW 156 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeE------EEEe-CCEEEEECCC
Confidence 1122222 2334457899999999983 3333 4568888754
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.60 E-value=1.5 Score=38.63 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=39.0
Q ss_pred ceEEEEecCCCCcc--eEEEEEEeCCccEEEEEeCCCceeeee----ecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257 199 KIELCRFSKDGTKP--FLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 199 ~v~~~~~~~~~~~~--~~~~~~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
.+..+.|....... .-.+++..-..+.|....++....+.. +......+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45566665443321 001134444566777777764432211 122344789999999998888877788774
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.77 Score=36.36 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=96.1
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcc
Q 016257 123 DGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEK 199 (392)
Q Consensus 123 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 199 (392)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-+..+ ...-.+|.-..+|.++-+++..+.-..++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG- 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG- 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence 4555555543 3569999999988765543332122111111112222 23346788889999888887776544332
Q ss_pred eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCC---cEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKP---ASVLSISLDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~---v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 274 (392)
..+ ..|+.. ++.+....+++.-|.++......... ...+ ++.+.| -+|...|=.-.+..|...|..
T Consensus 134 -WgL--t~d~~~-----LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 134 -WGL--TSDDKN-----LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred -eee--ecCCcc-----eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 333 345554 56666667777777765443322221 1222 233344 255555555555567777777
Q ss_pred Cceeeeeeec-----------cccCcceEEEEEeeCCC-eEEEE
Q 016257 275 KMEINHWSKR-----------LHLGTSIALVEFCPTQR-VVLTA 306 (392)
Q Consensus 275 ~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~-~l~~~ 306 (392)
+|++...+.. .+ ..-.+.+++.|++. ++++|
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCccccc-cccccceeecCcCCeEEEec
Confidence 7776665521 12 34677889988874 45554
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.38 E-value=3.1 Score=40.97 Aligned_cols=191 Identities=9% Similarity=0.034 Sum_probs=110.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeecccCCCC--------cEEEEEec----------------CCCCeEEEEcCCCcEE
Q 016257 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--------SVLDMDFS----------------LDSEFLATTSTDGSAR 179 (392)
Q Consensus 124 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~i~~i~~~----------------~~~~~l~~~~~d~~i~ 179 (392)
+..++.++.++.|.-.|.++|+.+-++..... ....+.+. ..++.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788889999999999887765432211 11223321 1345788888999999
Q ss_pred EEECCCCeeeEEEecCCCcceE-------------EEEecC---CCCcceEEEEEEeC----------CccEEEEEeCCC
Q 016257 180 IWKTEDGVAWTFLTRNSDEKIE-------------LCRFSK---DGTKPFLFCTVQRG----------DKALLAVYDIST 233 (392)
Q Consensus 180 vwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~~~~~~~~~----------~d~~i~v~d~~~ 233 (392)
-.|.++++....+.... .+. .+.-.| ++. ++.++ .+|.|+-+|.++
T Consensus 274 ALDA~TGk~~W~fg~~G--~vdl~~~~g~~~~g~~~~ts~P~V~~g~------VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNG--TVDLTAGMGTTPPGYYYPTSPPLVAGTT------VVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEECCCCCEEEEecCCC--ceeeecccCcCCCcccccccCCEEECCE------EEEEecccccccccCCCcEEEEEECCC
Confidence 99999999887653211 110 011111 121 23332 268899999999
Q ss_pred ceeeeeeccc---------C--------CCc-EEEEECCCCCEEEEEeC------------------CCcEEEEecCCce
Q 016257 234 WNKIGHKRLL---------R--------KPA-SVLSISLDGKYLAMGSK------------------DGDICVVDVKKME 277 (392)
Q Consensus 234 ~~~~~~~~~~---------~--------~~v-~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~ 277 (392)
++.+-.+... . ..+ ..+++.++...++.+.. .+.|.-.|.++++
T Consensus 346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 9876443210 0 011 23455565555554321 2456667888888
Q ss_pred eeeeeecccc-------CcceEEEEEee-CCC---eEEEEeCCCeEEEEEeecCcc
Q 016257 278 INHWSKRLHL-------GTSIALVEFCP-TQR---VVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 278 ~~~~~~~~~~-------~~~i~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~ 322 (392)
..-.+...|. .....-+.+.. +|+ .++.++.+|.+.+.|-.+++.
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 7655543220 11122222332 553 788889999998888876654
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.29 E-value=1.6 Score=39.13 Aligned_cols=143 Identities=9% Similarity=-0.006 Sum_probs=75.9
Q ss_pred CeEEEEecCCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--eecccCCCCcEEEEEecCCCCeEEEEcCCCc
Q 016257 114 PQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPS--LRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~ 177 (392)
....++|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.+++ |++++.. .
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-D 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-e
Confidence 457889999998776642 123 676765432 221 12222223356789999888 4444444 3
Q ss_pred EEEE-ECCCC-----ee--eE-EEecC---CCcceEEEEecCCCCcceEEEEEEeC------------------CccEEE
Q 016257 178 ARIW-KTEDG-----VA--WT-FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA 227 (392)
Q Consensus 178 i~vw-d~~~~-----~~--~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~d~~i~ 227 (392)
|..+ |.... +. +. .+... .......++|.|||.. | +..++ ..+.|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Y---v~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-Y---FNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-E---EecccCCCceeccCCCccCcccccCceEE
Confidence 4434 44211 11 11 12111 1224678999999863 2 12221 014566
Q ss_pred EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC
Q 016257 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK 264 (392)
Q Consensus 228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 264 (392)
-+|....+.. .+...-.....++|+|+|+++++-..
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 6666654432 22222234568999999988876443
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.27 E-value=0.64 Score=41.98 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=90.9
Q ss_pred cCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE--EEEEEeCCccEEEEEeCCCc-eeee
Q 016257 163 SLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTW-NKIG 238 (392)
Q Consensus 163 ~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~v~d~~~~-~~~~ 238 (392)
..+..+|+ .++....++--|++.|+.+..+..+.. + -+.|.|..+..-+ --.+.|-.+..|.-.|.+-. ..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 33445544 345556788889999999999886654 3 6777775432100 00244445555666666532 2221
Q ss_pred eecccCCCcEEEEEC----CCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257 239 HKRLLRKPASVLSIS----LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 239 ~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 314 (392)
... .....+.-.|| ....++|+++..|.|++||.-.......+ .+. +..|..+..+.+|+++++.+.. .+.+
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~l-G~aIk~idvta~Gk~ilaTCk~-yllL 628 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGL-GDAIKHIDVTANGKHILATCKN-YLLL 628 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-ccc-ccceeeeEeecCCcEEEEeecc-eEEE
Confidence 111 11122222222 23469999999999999996543333333 344 7889999999999999888766 7777
Q ss_pred EEeec
Q 016257 315 TKLTV 319 (392)
Q Consensus 315 w~~~~ 319 (392)
-+++.
T Consensus 629 ~d~~i 633 (776)
T COG5167 629 TDVPI 633 (776)
T ss_pred Eeccc
Confidence 77654
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=95.20 E-value=2 Score=37.79 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=127.0
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
...++++.|....+-+++|. ++. ||...++....+......+ ....++.++.|.++ ..+++ +..+.|..- -+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~--~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~D 116 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLP--EENFRLISISFKGD-EGWIV-GQPSLLLHT-TD 116 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCc--ccccceeeeEEcCC-cEEEe-CCCceEEEE-CC
Confidence 55788999986566666664 453 4444443322222111110 12234677888643 34444 445543321 12
Q ss_pred CCceeeccc---CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 143 ~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
.++.-.... ........+.....+..++. +..|.|..= ...++.-..+.......+..+.+.|++.. +.
T Consensus 117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~------v~ 188 (334)
T PRK13684 117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKY------VA 188 (334)
T ss_pred CCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeE------EE
Confidence 222111111 11111222222222333333 334444322 22344434443334456889999998763 44
Q ss_pred eCCccEEEE-EeCC--CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc--ccCcceEEE
Q 016257 220 RGDKALLAV-YDIS--TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALV 294 (392)
Q Consensus 220 ~~~d~~i~v-~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~ 294 (392)
.+..|.+.. +|-. +.+.+ .......++++.+.++++.++++ ..|.+++=....++.-...... .....+..+
T Consensus 189 ~g~~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v 265 (334)
T PRK13684 189 VSSRGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDL 265 (334)
T ss_pred EeCCceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeE
Confidence 444554443 2222 12222 22345678899999999887765 4576543234444322211111 113457889
Q ss_pred EEeeCCCeEEEEeCCCeEEEEEeecCccccceee-e----eeeeeeeeeceEEEEeeecceeeeec
Q 016257 295 EFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-Y----SLLLALFLASAVVFYIFFENSDSFWN 355 (392)
Q Consensus 295 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~d~~i~~W~ 355 (392)
.+.+++..++ ++.+|.+.. ..+.++.+..... . ......+......+..+..|.|--|+
T Consensus 266 ~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 266 AYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred EEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 9999877554 555666543 3333333322110 0 01111223344555666666665554
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.10 E-value=2.4 Score=38.02 Aligned_cols=191 Identities=17% Similarity=0.177 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCeEEEEe--CC----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--------
Q 016257 66 PMTIAVNPSGDDFVCST--TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------- 131 (392)
Q Consensus 66 v~~~~~sp~~~~l~~~~--~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------- 131 (392)
...+..-|+|+.++++- .+ |.+.+.|-++.+....-.... .....-..+-|.|..+.+++..
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~ 207 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDR----GPQPFGYDFWYQPRHNVMISSEWGAPSMFE 207 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-----TT------EEEETTTTEEEE-B---HHHHT
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCC----CCCCCCCCeEEcCCCCEEEEeccCChhhcc
Confidence 44455567898888753 22 346666655544332221111 1123446778888777888753
Q ss_pred ------------CCCcEEEEeCCCCceeecccCCCC--cEEEEEecC--CCCe-EEEEcCCCcEEEEEC-CCCee----e
Q 016257 132 ------------VDGHLRIMHWPSLRIILDEPKAHK--SVLDMDFSL--DSEF-LATTSTDGSARIWKT-EDGVA----W 189 (392)
Q Consensus 132 ------------~dg~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~--~~~~-l~~~~~d~~i~vwd~-~~~~~----~ 189 (392)
...++.+||+.+.+.++.+--... ....+.|.. +..+ ++.+.-..+|..|-- +.++- +
T Consensus 208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence 235799999999888776654433 466777744 4444 333333445544433 33322 1
Q ss_pred EEEecC--------C--------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeec---------
Q 016257 190 TFLTRN--------S--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR--------- 241 (392)
Q Consensus 190 ~~~~~~--------~--------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~--------- 241 (392)
..+... . ..-++.+..|.|.+++| +++-..|.|+.||+.... ...+..
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY----vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~ 363 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY----VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGD 363 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE----EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEE----EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence 111110 0 12478899999999743 667789999999997632 222211
Q ss_pred -------ccCCCcEEEEECCCCCEEEEEeC
Q 016257 242 -------LLRKPASVLSISLDGKYLAMGSK 264 (392)
Q Consensus 242 -------~~~~~v~~~~~s~~~~~l~~~~~ 264 (392)
...+....+..|-||+.|+..++
T Consensus 364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS------S----EEE-TTSSEEEEE--
T ss_pred CccccccccCCCCCeEEEccCCeEEEEEee
Confidence 01223467888999998887653
No 432
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.04 E-value=1.9 Score=36.54 Aligned_cols=205 Identities=11% Similarity=0.003 Sum_probs=113.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCC------CCc-eeecccC-----CCCcEEEEEecCCCC------------eE
Q 016257 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWP------SLR-IILDEPK-----AHKSVLDMDFSLDSE------------FL 169 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~------~~~-~~~~~~~-----~~~~i~~i~~~~~~~------------~l 169 (392)
.-+.++++|.+.+-++....+...+||.. ..+ .+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 44789999999888887778899999986 121 2223321 123567777764322 26
Q ss_pred EEEcCCCcEEEEECCCCee-----eEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee--eec
Q 016257 170 ATTSTDGSARIWKTEDGVA-----WTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKR 241 (392)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~ 241 (392)
+.+++||+|.-|...-... ...+... .......+++...+...++ .++--..++|.+||-.-.+... .+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L--YaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL--YAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE--EEeccCCCceEEecCccccccCCCCcc
Confidence 7788999999998533222 1122211 1223345666654332222 2445568899999865432210 011
Q ss_pred cc-------CCCcEE---------EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee------C
Q 016257 242 LL-------RKPASV---------LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP------T 299 (392)
Q Consensus 242 ~~-------~~~v~~---------~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------~ 299 (392)
.. ...|.. ..-.++++.=+.|..-|.|-+||....-+.+....+. -...+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~-LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGR-LNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCc-ccCCceeeeChhhhCCCC
Confidence 00 001110 1111222222223334789999986544444333333 45667788766 4
Q ss_pred CCeEEEEeCCCeEEEEEeecCc
Q 016257 300 QRVVLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~ 321 (392)
|.+|+---.||+|..+|...+.
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 5666666679999999987543
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.95 E-value=0.63 Score=44.48 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=74.3
Q ss_pred CeeEEEEcC--CCCeEEEEeCCCeEEEEEEeCCcc------------ceeeccccCCCCCCCCCeEEEEec--CCCCEEE
Q 016257 65 DPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGAT------------DINLLAKKMPPLQDAGPQKCLSFS--VDGSRFA 128 (392)
Q Consensus 65 ~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~ 128 (392)
.|+.|.... +...|+.+..||.|.+|.++.--. ...........+.....+++++++ ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 455555543 445788999999999997632110 000000111112234688999998 7788899
Q ss_pred EEeCCCcEEEEeCCCC--ceee-cccCCCCcEEEEEecCCC---C---eEEEEcCCCcEEEEEC
Q 016257 129 AGGVDGHLRIMHWPSL--RIIL-DEPKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT 183 (392)
Q Consensus 129 ~~~~dg~i~i~d~~~~--~~~~-~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~vwd~ 183 (392)
+++....|.||-.... +... ....+...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9888888888866432 1111 111233478889986633 2 6788888999988887
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.94 Score=40.34 Aligned_cols=107 Identities=6% Similarity=0.034 Sum_probs=71.0
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 141 (392)
..++|.++.||+|.+.||+--.+.+|.+++....+.......... .....|....|+.+ .-+|..+..| +-+|..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck---~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK---TKNANILGFCWTSS-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc---cCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence 357999999999999999999999999999855543222221111 12346889999876 4566555444 667765
Q ss_pred CCCce-eecccCCCCcEEEEEecCCCCeEEEEc
Q 016257 142 PSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTS 173 (392)
Q Consensus 142 ~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~ 173 (392)
...+. ++....+.-.|.-..|.++.+.++.++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 54333 233344445788888999887654443
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.92 E-value=2.7 Score=37.82 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=81.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEE-EEeCCCCce--eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe----
Q 016257 115 QKCLSFSVDGSRFAAGGVDGHLR-IMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---- 187 (392)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~---- 187 (392)
...+..++|+.+++.+. .|.+. -|| .++. ..........++.+.+.+++..++++ .+|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 34456677887777664 44433 333 2322 11222334578999999998877766 456544 3333443
Q ss_pred -eeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEE
Q 016257 188 -AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMG 262 (392)
Q Consensus 188 -~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~ 262 (392)
........ ....+..+.|.+++. ++..+..|.+..-. ..++.-... .........+.|.++++.+++|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~------~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKE------AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCc------EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 12222211 223488899998887 57777778666654 333332222 2224567889988777666665
Q ss_pred eCCCcEEEE
Q 016257 263 SKDGDICVV 271 (392)
Q Consensus 263 ~~dg~i~iw 271 (392)
.+|.|.-|
T Consensus 389 -~~G~il~~ 396 (398)
T PLN00033 389 -NDGVLLRY 396 (398)
T ss_pred -CCcEEEEe
Confidence 46766544
No 436
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.91 E-value=0.11 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCeeEEEEcCCC---CeEEEEeCCCeEEEEEEeC
Q 016257 64 GDPMTIAVNPSG---DDFVCSTTNGGCKLFEVYG 94 (392)
Q Consensus 64 ~~v~~~~~sp~~---~~l~~~~~d~~i~iw~~~~ 94 (392)
++|.++.|+|+. ++|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 5888888889999999985
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.67 E-value=4.7 Score=39.38 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=55.2
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC----------ccceee----ccccCCCCCCCCCeEEEEecCC---CCE
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG----------ATDINL----LAKKMPPLQDAGPQKCLSFSVD---GSR 126 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~ 126 (392)
-.|..+.++|+|.+|+..+..| |.|..+... +..... .............|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688999999999999988877 777666431 110000 1111111224467899999995 578
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 016257 127 FAAGGVDGHLRIMHWPSLR 145 (392)
Q Consensus 127 l~~~~~dg~i~i~d~~~~~ 145 (392)
|++-..|+++|+||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888999999999996543
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=1.3 Score=39.48 Aligned_cols=136 Identities=12% Similarity=0.211 Sum_probs=80.5
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 016257 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII 147 (392)
Q Consensus 68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 147 (392)
.+-|....+.|++ ...|.+.=|.++........ .......++|.++.||+|.+.||+--.+.+|.+++....+..
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpi----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPI----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCc----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 3444433334433 44555777777655421111 011124679999999999999999999999999998543332
Q ss_pred ecc----cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCc
Q 016257 148 LDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK 211 (392)
Q Consensus 148 ~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 211 (392)
... ......|....|+.+ .-+|..+..| +.+|.....+. ++..+. +...|.-..|.++...
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks-~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS-HNLNVNWYMYCPETAV 167 (657)
T ss_pred hHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhh-cccCccEEEEccccce
Confidence 221 122236999999876 4455555434 66776543322 222222 3345777788888764
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=94.57 E-value=3.6 Score=38.37 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=67.4
Q ss_pred CCCCEEEEEeCC--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC---cEEEEECCCCeeeEEEecCC
Q 016257 122 VDGSRFAAGGVD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNS 196 (392)
Q Consensus 122 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~ 196 (392)
-++...+.|+.+ ..+..||..+++......-...........-+++..+.|+.++ .+..||.++.+-...-....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 356666777653 4578888766543321111111111111222567777777553 46788887654332111111
Q ss_pred CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeCC-----CcEE
Q 016257 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDIC 269 (392)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~ 269 (392)
. .....+..-++.. .+.| |...+||.++.+ .+..+.........+. -+|+..++|+.+ ..+.
T Consensus 397 ~-r~~~~~~~~~~~I-----Yv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 397 P-HYKSCALVFGRRL-----FLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred c-cccceEEEECCEE-----EEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEE
Confidence 1 0111111223331 2333 246678876543 2222222122222222 366777777754 3466
Q ss_pred EEecCCcee
Q 016257 270 VVDVKKMEI 278 (392)
Q Consensus 270 iwd~~~~~~ 278 (392)
.||..+.+-
T Consensus 466 ~Yd~~~~~W 474 (480)
T PHA02790 466 VYNNRTYSW 474 (480)
T ss_pred EEECCCCeE
Confidence 777766553
No 440
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.57 E-value=5.5 Score=39.65 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=99.5
Q ss_pred CCCCCeeEEEEc---C----CCCeEEEEeCCCeEEEEEEeCCcc-------ceeeccccCCCCC----CCCCeEEEEecC
Q 016257 61 ESEGDPMTIAVN---P----SGDDFVCSTTNGGCKLFEVYGGAT-------DINLLAKKMPPLQ----DAGPQKCLSFSV 122 (392)
Q Consensus 61 ~h~~~v~~~~~s---p----~~~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~~~----~~~~v~~~~~s~ 122 (392)
.-..+|..|+|. . ..++|++- ....+.|+...-.+. ...+.......+. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 22356554 445578877322221 0111111111111 234678999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCce----eecc-cCC----------CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 016257 123 -DGSRFAAGGVDGHLRIMHWPSLRI----ILDE-PKA----------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (392)
Q Consensus 123 -~~~~l~~~~~dg~i~i~d~~~~~~----~~~~-~~~----------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~ 186 (392)
+...||+....|...||++..... .... ... ...-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 666899999999999999921110 0000 011 123457889888888888876 67999999887
Q ss_pred eeeE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257 187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 233 (392)
.... .........|..+.-+|.... +++ ++|. ..|...|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~-~~F-iLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPS-HVF-ILTS---KEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccc-eEE-EEec---CeEEEEEccC
Confidence 6644 333344557888888887443 121 3442 4577777776
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.40 E-value=0.23 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCcEEEEECCCC---CEEEEEeCCCcEEEEecCC
Q 016257 245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 245 ~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~ 275 (392)
+.++++.|||+. .+|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4888887889999999995
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.36 E-value=1.5 Score=32.20 Aligned_cols=119 Identities=10% Similarity=-0.004 Sum_probs=68.3
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-----CCCEEEEEeCCCcEEEEeCC
Q 016257 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~d~~ 142 (392)
.-.|......|++++..|.|.|++.................+.-...|++++-.+ +...|+.|+ ...+..||++
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3456555668888888899999987644321111111122222345677775433 345677776 5679999998
Q ss_pred CCceeecccCCCCcEEEEEecC---CCCeEEEEcCCCcEEEEECCCCee
Q 016257 143 SLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA 188 (392)
Q Consensus 143 ~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~~ 188 (392)
....+. ...-.+.+.++.+-. ...-++..+.+..|.-||.+..+.
T Consensus 82 ~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 776543 233345677776632 122344444456777777654433
No 443
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.10 E-value=4.6 Score=36.96 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=61.7
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC------CEEEEEe---
Q 016257 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGG--- 131 (392)
Q Consensus 61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~--- 131 (392)
..-...+.|+|.|||+.|++--..|.|++++..+..................+....++++|+- .+|+...
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 3356789999999998777654469999987544332111111001011135678999999874 2444432
Q ss_pred -------CCCcEEEEeCCCC-------ceeec-ccCC-CCcEEEEEecCCCCeEEEEcCC
Q 016257 132 -------VDGHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTSTD 175 (392)
Q Consensus 132 -------~dg~i~i~d~~~~-------~~~~~-~~~~-~~~i~~i~~~~~~~~l~~~~~d 175 (392)
....|.-|.+... +.+.. +... ...-..|.|.|||.++++.+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544321 11211 1111 1123467899999877765543
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=5.2 Score=38.29 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=90.2
Q ss_pred CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe---cCCCcceEEEEecCCC
Q 016257 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---RNSDEKIELCRFSKDG 209 (392)
Q Consensus 133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 209 (392)
.-.|+|+++ +|+.+....-.++.+-.+.|+.+. .|++...+|++.+|++-. ..+.... ......|..+.+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 345888886 556665555556688899999765 566778899999999843 2222211 1112235555555555
Q ss_pred CcceEEEEEEeCCccEEEEEeCCCceeeeeecc-c--CCCcEEEEECCCCC---EEEEEe-CCCcEEEEecCCc--eeee
Q 016257 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-L--RKPASVLSISLDGK---YLAMGS-KDGDICVVDVKKM--EINH 280 (392)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~--~~~v~~~~~s~~~~---~l~~~~-~dg~i~iwd~~~~--~~~~ 280 (392)
-. +....+..+.+-+...... ..+.. . ..+-+|-+.-+++. .++-.. ..+ ..++..... +...
T Consensus 140 Va------vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 VA------VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA 211 (829)
T ss_pred eE------EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc
Confidence 42 2222223344444433221 12211 1 11112222222221 111111 111 122222222 2222
Q ss_pred eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257 281 WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (392)
Q Consensus 281 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 320 (392)
.. .. .+.+..++.||+.++|+--..+|.|.+-..+..
T Consensus 212 ~~-~~--~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 212 LS-WP--NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred cC-CC--CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 11 11 367888999999999999999999988776643
No 445
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.89 E-value=4.2 Score=35.71 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=62.3
Q ss_pred CeeEEEEcCCCCeEEEEeCC------CeEEEEEEeCCccceeec-cccC-------CCCCCCCCeEEEEecCCCCEEEEE
Q 016257 65 DPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLL-AKKM-------PPLQDAGPQKCLSFSVDGSRFAAG 130 (392)
Q Consensus 65 ~v~~~~~sp~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~-~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~ 130 (392)
...++++.++|.++++.-.+ ..|..++.. +.....+. .... .....+....+++++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45588887788887776666 667777755 44333331 1111 233456789999999999977765
Q ss_pred eC-----CC--c-------EEEE--eCCC-Cce----eecccC-----CCCcEEEEEecCCCCeEEE
Q 016257 131 GV-----DG--H-------LRIM--HWPS-LRI----ILDEPK-----AHKSVLDMDFSLDSEFLAT 171 (392)
Q Consensus 131 ~~-----dg--~-------i~i~--d~~~-~~~----~~~~~~-----~~~~i~~i~~~~~~~~l~~ 171 (392)
.+ |+ . ++++ |..+ ++. ...+.. ....+..+.+-+++++|+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 43 22 1 4454 4433 211 122221 2346788888888875553
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.89 E-value=0.45 Score=38.86 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=49.5
Q ss_pred cCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC--------CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (392)
Q Consensus 72 sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 143 (392)
..++++|++-+.+|.+++||+.+.+....... ..+.+ .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 34678899999999999999998875433310 00111 2456788888988887777654 57888888654
Q ss_pred C
Q 016257 144 L 144 (392)
Q Consensus 144 ~ 144 (392)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.88 E-value=0.59 Score=38.15 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=49.3
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCceeecc------c--------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 016257 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (392)
Q Consensus 120 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~--------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~ 185 (392)
+..++++|++.+.+|.+++||+.+++.+... . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456889999999999999999987764332 1 2334688888888887776655 57888898754
Q ss_pred Ce
Q 016257 186 GV 187 (392)
Q Consensus 186 ~~ 187 (392)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 448
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.77 E-value=5.2 Score=36.47 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=90.3
Q ss_pred EEecCCCCEEEE-EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCC-------eEEEEcCCCcEEEEECCC-Cee
Q 016257 118 LSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-------FLATTSTDGSARIWKTED-GVA 188 (392)
Q Consensus 118 ~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~d~~i~vwd~~~-~~~ 188 (392)
+-...|.++|+. |.....++-.|++.|+.+.....+... -+.|.|+.+ .-++|-.+..|.-.|.+- +..
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 334445555544 555667888888888887666555443 466777532 123344455565566553 222
Q ss_pred eEEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC
Q 016257 189 WTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (392)
Q Consensus 189 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 265 (392)
+...... ......+..-..+|- ++.++..|-|++||.-..+....+.+.+..|..+..+.+|+++++.+.
T Consensus 551 i~v~esKdY~tKn~Fss~~tTesGy------Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk- 623 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTESGY------IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK- 623 (776)
T ss_pred eeeeeehhccccccccccccccCce------EEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-
Confidence 2222111 111222333333333 799999999999997655555566777888999999999999887774
Q ss_pred CcEEEEecC
Q 016257 266 GDICVVDVK 274 (392)
Q Consensus 266 g~i~iwd~~ 274 (392)
..+.+-|++
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 467777764
No 449
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.61 E-value=7.2 Score=37.71 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=52.6
Q ss_pred EEEEecCCCCeEEEEcCCC-----cEEEEECCCCeeeEE--EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257 158 LDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (392)
Q Consensus 158 ~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d 230 (392)
..+.|-|.|..+++-..|| .|.++.- +|-.... +..+..+.+..++|+-... +......+.+.+|-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~------vlav~~~n~~~lwt 322 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLST------VLAVAEGNLLKLWT 322 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHH------HHHHhhcceEEEEE
Confidence 3488999999999877554 2445542 2211111 1222334566677776655 34445567899997
Q ss_pred CCCceeeeeecccCCCcEEEEECCCC
Q 016257 231 ISTWNKIGHKRLLRKPASVLSISLDG 256 (392)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (392)
..+..-.......-..+.-+.|+|..
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeecccc
Confidence 76543322222233456667888854
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.39 E-value=5.1 Score=35.11 Aligned_cols=65 Identities=6% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCcee---ecccCCCCcE--EEEEecCCCCeEEEEcCC-----CcEEEEECCCCe
Q 016257 123 DGSRFAAGGVD-----GHLRIMHWPSLRII---LDEPKAHKSV--LDMDFSLDSEFLATTSTD-----GSARIWKTEDGV 187 (392)
Q Consensus 123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~~~~~i--~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~ 187 (392)
++.+++.|+.+ ..+..+|+.+.+.. .....-..+. .+++.. +++..+.|+.. ..+..||+++.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 35667777665531 1111111111 122222 45666666642 357888887664
Q ss_pred e
Q 016257 188 A 188 (392)
Q Consensus 188 ~ 188 (392)
-
T Consensus 151 W 151 (323)
T TIGR03548 151 W 151 (323)
T ss_pred e
Confidence 3
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.19 E-value=6.3 Score=35.58 Aligned_cols=145 Identities=15% Similarity=0.109 Sum_probs=80.2
Q ss_pred EEEEEecCCCCeEEEEcCCCcEE-EEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257 157 VLDMDFSLDSEFLATTSTDGSAR-IWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (392)
Q Consensus 157 i~~i~~~~~~~~l~~~~~d~~i~-vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~ 234 (392)
...+..++++.+++.+.. |.+. -|| .+.. -..........+..+.+.+++.. +..+..|.+..- ...+
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l------~l~g~~G~l~~S-~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGL------WLLTRGGGLYVS-KGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCE------EEEeCCceEEEe-cCCC
Confidence 344566778777776654 4433 333 2222 12333334456889999999883 445556665443 2222
Q ss_pred e-----eeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee--ccccCcceEEEEEeeCCCeEEE
Q 016257 235 N-----KIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLT 305 (392)
Q Consensus 235 ~-----~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~ 305 (392)
+ ....... ....+.++.+.+++..+++| .+|.+..- ...++.-.... ..- ....+.+.|.++++.+++
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCC-CcceeEEEEcCCCceEEE
Confidence 2 1111111 22458889999887766655 56766555 34444322221 111 457889999877665555
Q ss_pred EeCCCeEEEE
Q 016257 306 ASKEWGAMIT 315 (392)
Q Consensus 306 ~~~dg~i~iw 315 (392)
| .+|.|.-|
T Consensus 388 G-~~G~il~~ 396 (398)
T PLN00033 388 G-NDGVLLRY 396 (398)
T ss_pred e-CCcEEEEe
Confidence 4 56666443
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.17 E-value=8.7 Score=37.17 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=67.5
Q ss_pred EEEeCCccEEEEEeCCCc-----------e---------eeeeecccCCCcEEEEEC--CCCCEEEEEeCCCcEEEEecC
Q 016257 217 TVQRGDKALLAVYDISTW-----------N---------KIGHKRLLRKPASVLSIS--LDGKYLAMGSKDGDICVVDVK 274 (392)
Q Consensus 217 ~~~~~~d~~i~v~d~~~~-----------~---------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iwd~~ 274 (392)
++.+.+||.|.+|.++.- + +...+ ......+.++++ ...++||+++....|.||-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 688899999999976320 0 01111 124577889998 778899999888888887554
Q ss_pred Cc--eeeeeeeccccCcceEEEEEeeCC---C---eEEEEeCCCeEEEEEee
Q 016257 275 KM--EINHWSKRLHLGTSIALVEFCPTQ---R---VVLTASKEWGAMITKLT 318 (392)
Q Consensus 275 ~~--~~~~~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~iw~~~ 318 (392)
.. +........+ ...|.+++|-++. . +|++++-.|.+.+|++.
T Consensus 196 l~~~r~~~~~s~~~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 196 LVDERFYHVPSHQH-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccccccccccccc-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 42 2111111123 5678999998754 2 78889999999999884
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.93 E-value=0.84 Score=40.62 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=92.5
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeE-EEEecCCCCEEEEEeCCCcEEEE-e
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM-H 140 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~-d 140 (392)
...|..+-..|||+.|+.-+. .++.++++.+.....+......+. +....|+ .+..-..|..+++++.||-|.-| |
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg-~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG-DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-chHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 345777888999998887655 568999987765432211111000 0001122 22223456678888999998877 4
Q ss_pred CCCC-ceee----cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257 141 WPSL-RIIL----DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (392)
Q Consensus 141 ~~~~-~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (392)
.+.+ +... .+.-...++.-+.-..+.+-+++-+.+|++.++.....+.+-. ....+ .+.-+++||.+.+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~-~~~~~~~Sp~~~~---- 371 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQ-APQLVAMSPNQAY---- 371 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhc-CcceeeeCcccch----
Confidence 4332 2111 1111112333333233445577788888888887644443322 11122 4677899999986
Q ss_pred EEEEeCCccEEEEEeCCCcee
Q 016257 216 CTVQRGDKALLAVYDISTWNK 236 (392)
Q Consensus 216 ~~~~~~~d~~i~v~d~~~~~~ 236 (392)
....+.+.++++.+++..+
T Consensus 372 --Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 372 --LLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred --heeecCCceEEEEecCCCC
Confidence 4445667899988876443
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.88 E-value=0.017 Score=51.22 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=93.9
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEe
Q 016257 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLT 193 (392)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~ 193 (392)
.....|-+++.-++.++.+..+..||-. ++... .....+....++|..++..++ .+-..+.+.+||+.+.. .+++.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVIL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHh
Confidence 3455677877778888888889999843 33322 223345667888988877644 45567899999996543 23333
Q ss_pred cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEE
Q 016257 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (392)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 261 (392)
......-.-+.|++.... ++.+...+.+.+++..+.+.+.....|...++++++.+.+..+..
T Consensus 114 ~gg~~s~sll~wsKg~~e-----l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPE-----LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred ccCcchHHHHhhccCCcc-----ccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 222222333778888776 577778899999999877665555557788999999987654443
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.81 E-value=5.1 Score=34.11 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=67.6
Q ss_pred cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc------CCCcEEEEECCCCeeeEEEecC----CCcceEEEE
Q 016257 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRN----SDEKIELCR 204 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~----~~~~v~~~~ 204 (392)
.|.+||..+.+...--..-.+.|+++.|..+.+.++.|. ....+..||..+..- ..+... -.+++..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEE
Confidence 489999887665543334456899999987666676664 345688999876643 222221 235677777
Q ss_pred ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee-ecccCCCcEEEEE
Q 016257 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSI 252 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~ 252 (392)
+..+....+....-....+..|..||=.+...+.. .......|..+.+
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 75443322211111133456788888776665544 2222344555544
No 456
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.79 E-value=12 Score=37.59 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=46.1
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 250 LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 250 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
.++.|-..++++|- ...+++||+...++++.....+....|+.+.+ .+..++.|...-++.++..+.
T Consensus 939 ~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred eEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEec
Confidence 56678776766665 45799999988877665433322556777776 556788887777777776664
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=11 Score=37.44 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=42.9
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCceee---c------c--cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIIL---D------E--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (392)
Q Consensus 119 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~---~------~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~ 187 (392)
++..-|+.+..|+.+|.+.+|.+.+..... . + .-+..+|..+...+.-..+++- .|+.+.++++.+.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccc
Confidence 344457899999999999999886542110 0 0 0112456666666544444433 46788888887665
Q ss_pred e
Q 016257 188 A 188 (392)
Q Consensus 188 ~ 188 (392)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 5
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.77 E-value=0.018 Score=51.07 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=96.8
Q ss_pred EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (392)
Q Consensus 158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 237 (392)
....|-|.+.-++.++.+..+..||-... ...... .....-.++|..++... ++.+...+.+.+||+.+....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n--~tg~aldm~wDkegdvl----avlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN--PTGKALDMAWDKEGDVL----AVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC--CchhHhhhhhccccchh----hhhhhcCCCeeechhhhhhHH
Confidence 34568887777888888888999986433 222222 22345677888877753 456667788999999864432
Q ss_pred eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (392)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 310 (392)
+.-.+....-.-+.|++.+..++.+...|.+.|++..+....... ..| ...+++++|.+.+.. +.++.|.
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh-~RRgtq~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKH-QRRGTQIAVTLEDYV-ILCDCDN 180 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-ccc-ccceeEEEeccccee-eecCcHH
Confidence 222222222333789999999999999999999998876655443 126 788999999998754 4455553
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.65 E-value=7.3 Score=34.92 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=62.4
Q ss_pred eEEEEcCCCcEEEEECCCCeeeEEEecCC-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-C
Q 016257 168 FLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-K 245 (392)
Q Consensus 168 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~ 245 (392)
.++.+..+|.|.-.|.++++.+-...... ...+..-.+..+|+ ++.++.++.++.+|.++++.+-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~------i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK------IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe------EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 45555677888888887777543222111 11233333334777 6888888899999998888775555444 1
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (392)
Q Consensus 246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 281 (392)
.+.....-.+ ..+..++.++.+.-.|..+++..-.
T Consensus 144 ~~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 144 YYASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEE
Confidence 1111111123 3344444678888888887776444
No 460
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.43 E-value=9.1 Score=35.53 Aligned_cols=231 Identities=14% Similarity=0.049 Sum_probs=110.6
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (392)
Q Consensus 64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 143 (392)
.+|..+..+-.| .|..|+.+| +++.+.+..+...... .-..+.|..+.-..+| .+-.|+.+|..+. ..+.
T Consensus 206 k~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~------~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~r 275 (671)
T COG3292 206 KAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGP------MLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPR 275 (671)
T ss_pred hhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCC------CCcchheeeeecccCC-CEEEeecccceeE-ecCC
Confidence 345555544444 577788888 8887776633211110 0122344444444444 4555666664433 3322
Q ss_pred Cce-eecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC--CCcceEEEEE
Q 016257 144 LRI-ILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTV 218 (392)
Q Consensus 144 ~~~-~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~ 218 (392)
... ......+. ..|.++..+.+|. +-+++.++.+++-+. .-.....+.......+..++..|. +.. +.
T Consensus 276 q~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~-----v~ 348 (671)
T COG3292 276 QGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA-DWKRMAVINDSDGGVSQYEAVAPALLSWG-----VR 348 (671)
T ss_pred CCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc-hhhheeeeecCCCchhhhhccCchhcccc-----ee
Confidence 222 22222222 2566666666665 555665665554332 122222222211112222222221 111 11
Q ss_pred EeCCccEEEEEeCCCceeeeee-cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCcceEEEEE
Q 016257 219 QRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEF 296 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~ 296 (392)
....-+.+.+-+-.++..+... ......|+.+.+..+| .+-.|+..+-+..|+.++ +...... .+...++|..+.=
T Consensus 349 ~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~-agl~ss~V~aive 426 (671)
T COG3292 349 QLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDED-AGLPSSEVSAIVE 426 (671)
T ss_pred eccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccc-cCCcccceeeeee
Confidence 1112223444444444443332 2223556666776644 455556554477777776 3333333 2223678888888
Q ss_pred eeCCCeEEEEeCCCeEEE
Q 016257 297 CPTQRVVLTASKEWGAMI 314 (392)
Q Consensus 297 s~~~~~l~~~~~dg~i~i 314 (392)
.|+++ |..|+.+|.++.
T Consensus 427 d~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 427 DPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cCCCC-EEEeccCCeEec
Confidence 88888 778888877654
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.37 E-value=1.1 Score=35.05 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCcEEEEECCCC------CEEEEEeCCCcEEEEecCC
Q 016257 245 KPASVLSISLDG------KYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 245 ~~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~ 275 (392)
..+..++|||.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4688899999999998664
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.35 E-value=8.9 Score=35.19 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=36.6
Q ss_pred CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee--eEEEe----cCCCcceEEEEecCCC
Q 016257 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLT----RNSDEKIELCRFSKDG 209 (392)
Q Consensus 155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~ 209 (392)
.....|+|.||+++|++--..|.|++++..++.. +..+. .........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4567899999998776655469999998655432 11111 1123457899999985
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.28 E-value=7.4 Score=34.15 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=81.6
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCe------EEEEEEeCCc-cceeeccccCCCCC---------CCCCeEEEEecCCCCE
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGA-TDINLLAKKMPPLQ---------DAGPQKCLSFSVDGSR 126 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~------i~iw~~~~~~-~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~ 126 (392)
-+....+.+.|++..+++.+.+|. +..+++.... ............+. ..-...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999876666666677777 6666655411 00000000000000 0113457888778877
Q ss_pred EEEEeCC------CcEEEEeCCCCceeecc---------------cCCCCcEEEEEecCCCCeEEEEcC-----CC--c-
Q 016257 127 FAAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S- 177 (392)
Q Consensus 127 l~~~~~d------g~i~i~d~~~~~~~~~~---------------~~~~~~i~~i~~~~~~~~l~~~~~-----d~--~- 177 (392)
+++.-.+ ..|+.++.. ++....+ ........+++++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776556 677778765 4432222 112236889999999996666532 22 1
Q ss_pred ------EEE--EECCC-CeeeEEE--ecC------CCcceEEEEecCCCCc
Q 016257 178 ------ARI--WKTED-GVAWTFL--TRN------SDEKIELCRFSKDGTK 211 (392)
Q Consensus 178 ------i~v--wd~~~-~~~~~~~--~~~------~~~~v~~~~~~~~~~~ 211 (392)
+++ ||..+ ++....+ ... ....+..+.+-++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 444 44443 2222222 111 2346888999999884
No 464
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=4.9 Score=36.79 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=21.6
Q ss_pred ceEEEEEeeCC---CeEEEEeCCCeEEEEEeecCcc
Q 016257 290 SIALVEFCPTQ---RVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 290 ~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
.+..++|+|+. ..|..-+.|+.||+|++.....
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 45566677764 4666666777777777765544
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.95 E-value=5.6 Score=32.00 Aligned_cols=104 Identities=9% Similarity=0.080 Sum_probs=60.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEecCCCCeEEEEcCC---C---cEEEE---ECC--CCee----
Q 016257 125 SRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD---G---SARIW---KTE--DGVA---- 188 (392)
Q Consensus 125 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~---~i~vw---d~~--~~~~---- 188 (392)
+.|+.+.....|.+|++.+.. ........-+.|..+.++..|++|++--++ . .+|+| +.. ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 455444667889999998332 222233334789999999999999986432 2 45655 211 1111
Q ss_pred -----------------eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257 189 -----------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (392)
Q Consensus 189 -----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~ 234 (392)
+..++-+...++.+++..|-... ++.++ ++.+.+|.+...
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-----LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-----LLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-----EEEEc-CCEEEEEEEEEE
Confidence 11222223345667777776544 44444 457888877653
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.87 E-value=7.5 Score=33.36 Aligned_cols=145 Identities=11% Similarity=-0.005 Sum_probs=82.1
Q ss_pred cEEEEECCCCeeeEEEecC-----CCcceEEEEecCCCC-cceEEEEEEeCCccEEEEEeCCCceeeeeeccc-------
Q 016257 177 SARIWKTEDGVAWTFLTRN-----SDEKIELCRFSKDGT-KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------- 243 (392)
Q Consensus 177 ~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------- 243 (392)
+|.+||+.+++.++++..+ ....+..+++..... ..-.++.++-...+-|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6788898888887777543 234567777776332 100112355566678999999987654333221
Q ss_pred ------------CCCcEEEEECC---CCCEEEEEeCCCcEEEEecCCc-----eeee------ee-eccccCcceEEEEE
Q 016257 244 ------------RKPASVLSISL---DGKYLAMGSKDGDICVVDVKKM-----EINH------WS-KRLHLGTSIALVEF 296 (392)
Q Consensus 244 ------------~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~-----~~~~------~~-~~~~~~~~i~~~~~ 296 (392)
...+..++.+| +++.|+...-.+ -++|.+++. .... .+ ..+...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12355666655 666777665443 334433321 1000 00 01111235667889
Q ss_pred eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 297 CPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 297 s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
+++|.++++--..+.|..|+...+-.
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~ 219 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYT 219 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcC
Confidence 99999888888999999999886433
No 467
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.73 E-value=17 Score=37.11 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=94.1
Q ss_pred CCCcEEEEeCCCCceeecccCCC-CcEEEEEe-----cC----CCCeEEEEc-----C----CCcEEEEECCC-----Ce
Q 016257 132 VDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF-----SL----DSEFLATTS-----T----DGSARIWKTED-----GV 187 (392)
Q Consensus 132 ~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~-----~~----~~~~l~~~~-----~----d~~i~vwd~~~-----~~ 187 (392)
....|.+.+.++++.+-.+.-.. ..+.++.. .. ...+|++|. + -|.+.++|+-. ++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 34556666666555443322111 12333333 11 124677664 2 37899999742 22
Q ss_pred e-----eE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeC-CCceeeeeecccCCCcEEEEECCCCCEEE
Q 016257 188 A-----WT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STWNKIGHKRLLRKPASVLSISLDGKYLA 260 (392)
Q Consensus 188 ~-----~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 260 (392)
+ ++ .+.....++|..++ .-+|. +..+....|.+|++ +....+.. ...+-++.-.....-+++|+
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavc-eV~G~-------l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl 1152 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVC-EVRGH-------LLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLIL 1152 (1366)
T ss_pred CcccceeeeeehhhcccceEEEE-EeccE-------EEEccCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhhee
Confidence 1 12 22233344555543 33444 33344557999998 43333211 11222333333333456777
Q ss_pred EEeCCCcEEEEecCCc-eeeeeeeccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEee
Q 016257 261 MGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLT 318 (392)
Q Consensus 261 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~ 318 (392)
.|..-..|.+.-.+.. ..+..+.+....-.++++.|--||. .++++..|+.|+++...
T Consensus 1153 ~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 7766566766655442 2233332333255788889988887 67888899999998776
No 468
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.73 E-value=7 Score=32.70 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=139.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
......++-.|||..-+++...+.|--.|-.+++....-+ .....-..+..-|||..-++-+.. -|.-.|-+
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-------g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpk 132 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-------GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPK 132 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEec-------CCCCCCceEEECCCCCeeEecCcc-eeEEecCc
Confidence 3467778888999888888777777777777776433222 223455778888888776664333 45555655
Q ss_pred CCceee-cccC--CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257 143 SLRIIL-DEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (392)
Q Consensus 143 ~~~~~~-~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (392)
+.+... .+.. .........|.+.|++-+++.. |.---.|.. ...+..+........+.++..|+|.. -++
T Consensus 133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv-----wya 205 (353)
T COG4257 133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV-----WYA 205 (353)
T ss_pred ccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE-----EEE
Confidence 554321 1222 2236788899999998888753 211111211 12334444444455788999999984 344
Q ss_pred eCCccEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257 220 RGDKALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (392)
Q Consensus 220 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 297 (392)
.-.++.|...|..++... ..-.......+.+--+|.|+.-++....+.++-||.....-......+. +..-.++...
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD 284 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVD 284 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeec
Confidence 445666777776655221 1111212344556667888888887778889999877655333322233 4445566665
Q ss_pred eCCCeEEEEeCCCeEEEEE
Q 016257 298 PTQRVVLTASKEWGAMITK 316 (392)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~ 316 (392)
..++..++--.-|.|.-+|
T Consensus 285 ~~grVW~sea~agai~rfd 303 (353)
T COG4257 285 RHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred cCCcEEeeccccCceeecC
Confidence 5555444333334444443
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.36 E-value=10 Score=33.95 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=100.6
Q ss_pred eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC-C
Q 016257 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K 155 (392)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~ 155 (392)
.+.++..+|.+.-.|..++.......... ....+..-.+..+|+ ++.++.++.++.+|.++++.+....... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 44555778877777777766433221110 001122222222664 7788889999999998888876655443 1
Q ss_pred cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC--CcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeC
Q 016257 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI 231 (392)
Q Consensus 156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~ 231 (392)
.+..-..-.++ .+...+.++.+...+..+++..-...... ...+..-....++. +..+.. ++.+.-.|.
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT------VYVGSDGYDGILYALNA 216 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce------EEEecCCCcceEEEEEc
Confidence 11111122233 34444467888888888887766544321 11111111122222 344444 557777788
Q ss_pred CCceeeeeeccc----CCCc-EEEEECC----CCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257 232 STWNKIGHKRLL----RKPA-SVLSISL----DGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (392)
Q Consensus 232 ~~~~~~~~~~~~----~~~v-~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 283 (392)
+++...-..+.. ...+ ....+.. .+.-++.++.++.+...|..+++.+-...
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 777665442211 1111 0011110 11233566677888888888888766553
No 470
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.14 E-value=18 Score=36.33 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=95.5
Q ss_pred cEEEEeCCCCceeecccCCCC----cEEEEEecCCCC--eEEEEc-----------CCCcEEEEECC-CCeeeEEEecCC
Q 016257 135 HLRIMHWPSLRIILDEPKAHK----SVLDMDFSLDSE--FLATTS-----------TDGSARIWKTE-DGVAWTFLTRNS 196 (392)
Q Consensus 135 ~i~i~d~~~~~~~~~~~~~~~----~i~~i~~~~~~~--~l~~~~-----------~d~~i~vwd~~-~~~~~~~~~~~~ 196 (392)
.|++.|..+++.+..+....+ .+..+.|+.... +++++. .+|.++.|++- .++.+ .+..+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l-ellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL-ELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee-eeeecc
Confidence 478888877766543332222 567777766433 333332 23446666653 33322 222222
Q ss_pred CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEE--e
Q 016257 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVV--D 272 (392)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw--d 272 (392)
.-+-.-.+..|-..+ +.++....+++||+...+.++.... ....|+.+.+ .+..+++|...-.+.++ +
T Consensus 933 ~~~~~v~Ai~~f~~~------~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGR------VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCCccceEEeccCCE------EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence 212233456676664 4455567899999987766543332 2445666665 45677887765555554 4
Q ss_pred cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
-...+........- ...|+++.+- |-..++.+..=|.+.+-++.
T Consensus 1005 ~~~n~l~~fadD~~-pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPV-PRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCCCc-cceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 44455554443222 4567777665 44457777766777665554
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.12 E-value=6.9 Score=31.48 Aligned_cols=144 Identities=11% Similarity=0.159 Sum_probs=78.2
Q ss_pred CeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc---EEEEE---eCC--Ccee
Q 016257 167 EFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVY---DIS--TWNK 236 (392)
Q Consensus 167 ~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~---~i~v~---d~~--~~~~ 236 (392)
+.|+.+.....|.+|++... +...++. .-+.|..+.++..|.++ ..+-.-.... .+++| +.. ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYl--vTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYL--VTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceE--EEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 44444455678999999843 3344444 34579999999999962 1122222223 56665 211 1111
Q ss_pred ee-eec---------------------ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-e---eee------ec
Q 016257 237 IG-HKR---------------------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-N---HWS------KR 284 (392)
Q Consensus 237 ~~-~~~---------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~---~~~------~~ 284 (392)
+. .+- ....+..+++..|-..-|++|+ ++++.+|.++.... . ..+ ..
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~ 183 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLID 183 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhh
Confidence 11 000 1134667888888655555565 45799998765433 1 111 01
Q ss_pred cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257 285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (392)
Q Consensus 285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 318 (392)
.|..-.+..+++. +.++|..+.. .+++.++.
T Consensus 184 ~~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl~ 214 (215)
T PF14761_consen 184 HIDNFKPTQVAIC--EGYIAVMSDL-EVLVLKLE 214 (215)
T ss_pred eecCceEEEEEEE--eeEEEEecCC-EEEEEEEe
Confidence 1213345666664 4577777655 77777653
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.83 E-value=1 Score=40.15 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=95.7
Q ss_pred CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee-EEEecC-CC---cceE-EEEecCCCCcceEEEEEEeCCccEE
Q 016257 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRN-SD---EKIE-LCRFSKDGTKPFLFCTVQRGDKALL 226 (392)
Q Consensus 153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~-~~---~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i 226 (392)
....+..+-..|||+.++.-+. .++.++++.+.... +++... .+ ..|+ ++..-..+. .+...+.||.|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-----SLLv~~~dG~v 292 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-----SLLVVHEDGLV 292 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-----eEEEEcCCCce
Confidence 3346778889999999887765 67888888654321 122111 11 1111 111112222 26778888888
Q ss_pred EEE-eCCCcee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257 227 AVY-DISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (392)
Q Consensus 227 ~v~-d~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 300 (392)
.-| |.+.... ++.++....++..+.-..+.+-+++-..+|++..+.....+.+-.. .. -..+.-+++||.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~--~~~~~~~~~Sp~~ 369 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RA--YQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hh--hcCcceeeeCccc
Confidence 877 4443221 2222222334444433334566788888899888865544433222 22 3467788999999
Q ss_pred CeEEEEeCCCeEEEEEeecCccccce
Q 016257 301 RVVLTASKEWGAMITKLTVPADWKEW 326 (392)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~~~~~~~ 326 (392)
.++++- ..|+++++.++.+..-..|
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred chheee-cCCceEEEEecCCCCCccH
Confidence 988765 4579999999877654333
No 473
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.78 E-value=12 Score=33.64 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=25.9
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCceeecccCCCCcEE-EEEec-CCCCeEEEEcCC
Q 016257 123 DGSRFAAGGVD-----------GHLRIMHWPSLRIILDEPKAHKSVL-DMDFS-LDSEFLATTSTD 175 (392)
Q Consensus 123 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~l~~~~~d 175 (392)
++...+.|+.+ ..+..||..+.+............. ..+.. -+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 55566666643 2477888876554332111111111 11222 356777777754
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.03 E-value=1.8 Score=24.20 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.9
Q ss_pred CCCCEEEEEe-CCCcEEEEecCCceeeeeeec
Q 016257 254 LDGKYLAMGS-KDGDICVVDVKKMEINHWSKR 284 (392)
Q Consensus 254 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 284 (392)
|++++|+++. .++.|.++|..+++....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777777665 578899999998888776644
No 475
>PLN02193 nitrile-specifier protein
Probab=90.01 E-value=16 Score=33.97 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=69.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeecccC---CCC-cEEEEEecCCCCeEEEEcCCC-----cEEEEECCCCee
Q 016257 123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK---AHK-SVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVA 188 (392)
Q Consensus 123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~---~~~-~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~ 188 (392)
++.+.+.|+.+ ..+..||+.+.+....... ... .-.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45555666654 3588899887654322111 111 1112222 2456666666543 467788776543
Q ss_pred eEEEec----CCCcceEEEEecCCCCcceEEEEEEeCCc----cEEEEEeCCCceeeeeec----ccCCCcEEEEECCCC
Q 016257 189 WTFLTR----NSDEKIELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKR----LLRKPASVLSISLDG 256 (392)
Q Consensus 189 ~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d----~~i~v~d~~~~~~~~~~~----~~~~~v~~~~~s~~~ 256 (392)
...-.. ..... ..++. -+++. .+.++.+ ..+.+||+.+.+-..... .......++ ..-++
T Consensus 307 ~~~~~~~~~~~~R~~-~~~~~-~~gki-----yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~ 378 (470)
T PLN02193 307 FHCSTPGDSFSIRGG-AGLEV-VQGKV-----WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGK 378 (470)
T ss_pred EeCCCCCCCCCCCCC-cEEEE-ECCcE-----EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECC
Confidence 221100 00101 11222 23332 2333322 568999988754321111 001111122 22356
Q ss_pred CEEEEEeCC--------------CcEEEEecCCceee
Q 016257 257 KYLAMGSKD--------------GDICVVDVKKMEIN 279 (392)
Q Consensus 257 ~~l~~~~~d--------------g~i~iwd~~~~~~~ 279 (392)
++++.|+.+ +.+.+||+.+.+-.
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 777777753 24788898877644
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=11 Score=31.91 Aligned_cols=195 Identities=11% Similarity=-0.020 Sum_probs=115.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee-
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW- 189 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~- 189 (392)
+-+..+.++. ++...+..+.-++|.|+.+.........-. +--.++.. .|++...+..|.-+.+.|+.+....
T Consensus 87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 4556777764 477777777789999998765543322211 23344444 4888888886666888898765432
Q ss_pred --EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCEEEEEeCC
Q 016257 190 --TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKD 265 (392)
Q Consensus 190 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d 265 (392)
....... .....++.|-+ + ...+..|+-+.+-|+........+ ......+.++..+++..+++...+
T Consensus 163 lagrya~~~-~d~~~v~ISGn--~-----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e- 233 (370)
T COG5276 163 LAGRYALPG-GDTHDVAISGN--Y-----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE- 233 (370)
T ss_pred eeeeeccCC-CCceeEEEecC--e-----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-
Confidence 2222221 12345555543 3 355556777889998764332111 122336788888888777666543
Q ss_pred CcEEEEecCCceeeeeeeccccCcceEEE-EEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257 266 GDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQRVVLTASKEWGAMITKLTVPAD 322 (392)
Q Consensus 266 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (392)
-+.+-|..+.+.+..+..-. ...+.++ .+.-.+++......+..+.+-++..+..
T Consensus 234 -gvlivd~s~~ssp~~~gsye-t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 234 -GVLIVDVSGPSSPTVFGSYE-TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred -ceEEEecCCCCCceEeeccc-cCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence 47788887766444432222 2222222 2333566777777787888888876654
No 477
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.86 E-value=14 Score=32.81 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=26.3
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCceeecccCCCCcEEEE-Ee-cCCCCeEEEEcCC
Q 016257 123 DGSRFAAGGVD-----------GHLRIMHWPSLRIILDEPKAHKSVLDM-DF-SLDSEFLATTSTD 175 (392)
Q Consensus 123 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~i~~i-~~-~~~~~~l~~~~~d 175 (392)
+++..+.|+.+ ..+..||..+.+-.............. .. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666666643 247778887665432211111111111 11 2357777777654
No 478
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=12 Score=31.80 Aligned_cols=273 Identities=11% Similarity=0.082 Sum_probs=139.9
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 142 (392)
.+-+..+.++. ++...+..+.-++|.|+.+.......-. +...+.-.++.. .|++..++.-|.-+.+.|+.
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~-----lnt~gyaygv~v--sGn~aYVadlddgfLivdvs 156 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGF-----LNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVS 156 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceecc-----ccCCceEEEEEe--cCCEEEEeeccCcEEEEECC
Confidence 44566777754 4666666666699999988764322211 111133344444 58888888866667788886
Q ss_pred CCceee---cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEE
Q 016257 143 SLRIIL---DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTV 218 (392)
Q Consensus 143 ~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 218 (392)
+.+... +.......-..++.| |++-..+..|+-+.+.|+........+.. .....++++..+++..+ +
T Consensus 157 dpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y------~ 228 (370)
T COG5276 157 DPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY------L 228 (370)
T ss_pred CCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE------E
Confidence 554321 222222234566666 77777888899999999987644332221 12225777777777653 2
Q ss_pred EeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc-CcceEEEE
Q 016257 219 QRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-GTSIALVE 295 (392)
Q Consensus 219 ~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~ 295 (392)
+-. +.-+.+-|....+....+.. ...++..-.+.-.+++......+.-+.+-|+.+..-......... ...-..+.
T Consensus 229 vvy-~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ 307 (370)
T COG5276 229 VVY-DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR 307 (370)
T ss_pred EEc-ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE
Confidence 222 22355666665443322211 122221112333456666666666677777765433222111110 11223333
Q ss_pred EeeCCCeEEEEeCCCeEEEEEeecCccc---cceeeeeeeeeeeeeceEEEEeeecceeeeecc
Q 016257 296 FCPTQRVVLTASKEWGAMITKLTVPADW---KEWQIYSLLLALFLASAVVFYIFFENSDSFWNF 356 (392)
Q Consensus 296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~ 356 (392)
. .+.++..+..+ ...+-+...+.-. ........-...........+..+++...+|+.
T Consensus 308 a--y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 308 A--YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred E--ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 3 34455555555 3334444322211 111111111122223335566677888888875
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.32 E-value=15 Score=32.69 Aligned_cols=192 Identities=11% Similarity=0.095 Sum_probs=104.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec----CCCCe--EEEEc-CC---CcEEEEECCCC-eeeEE
Q 016257 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEF--LATTS-TD---GSARIWKTEDG-VAWTF 191 (392)
Q Consensus 123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~----~~~~~--l~~~~-~d---~~i~vwd~~~~-~~~~~ 191 (392)
...+++....++-+.+||++- +.+..+.. +.+..+..- -.|+. |+.++ ++ .+|++|.+... ..+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 455777777888899999864 44444432 233333321 13433 44443 32 46999987531 12333
Q ss_pred EecC------CCcceEEEEec--CCCCcceEEEEEEeCCccEEEEEeCC---Cc----eeeeeecccCCCcEEEEECCCC
Q 016257 192 LTRN------SDEKIELCRFS--KDGTKPFLFCTVQRGDKALLAVYDIS---TW----NKIGHKRLLRKPASVLSISLDG 256 (392)
Q Consensus 192 ~~~~------~~~~v~~~~~~--~~~~~~~~~~~~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~v~~~~~s~~~ 256 (392)
+... ....++.+++- +.....+ ++....+|.+..|.+. .+ +.++.+.. ...+..+......
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~y---a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALY---AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EE---EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEE---EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 2211 11235666664 3322222 4666677888877664 22 34555544 4578888888888
Q ss_pred CEEEEEeCCCcEEEEecCCc-----eeeeeeeccccCcceEEEEEee--CCC-e-EEEEeCCCeEEEEEeecCc
Q 016257 257 KYLAMGSKDGDICVVDVKKM-----EINHWSKRLHLGTSIALVEFCP--TQR-V-VLTASKEWGAMITKLTVPA 321 (392)
Q Consensus 257 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~s~--~~~-~-l~~~~~dg~i~iw~~~~~~ 321 (392)
..|+.+-++--|.-|+.+.. +.+......+....|..+++-. +++ | |++.-.+++..+|+...+.
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 89999998877888877521 2222222223367888888854 333 4 4455567899999987653
No 480
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.32 E-value=1.9 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=19.6
Q ss_pred ccCCCcEEEEECCCCCEEEEEeC-C--CcEEEE
Q 016257 242 LLRKPASVLSISLDGKYLAMGSK-D--GDICVV 271 (392)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~iw 271 (392)
..........|||||+.|+..+. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33456678999999998877664 3 555554
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.21 E-value=4 Score=27.71 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=29.7
Q ss_pred eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257 263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (392)
Q Consensus 263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 307 (392)
..+|.+.-||..+++........ ...+.+++++|+.+++.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEe
Confidence 34688999999999876655432 3778999999999776654
No 482
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.88 E-value=3.2 Score=39.55 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC----Cceeecc--------------c--------CCCCcEEEEEecC----CCCeEEE
Q 016257 122 VDGSRFAAGGVDGHLRIMHWPS----LRIILDE--------------P--------KAHKSVLDMDFSL----DSEFLAT 171 (392)
Q Consensus 122 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~--------------~--------~~~~~i~~i~~~~----~~~~l~~ 171 (392)
++...++.+..||.+....... +...... . ........+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888899888777653 1111100 0 0112355666666 6788999
Q ss_pred EcCCCcEEEEECCCCeeeEEEe
Q 016257 172 TSTDGSARIWKTEDGVAWTFLT 193 (392)
Q Consensus 172 ~~~d~~i~vwd~~~~~~~~~~~ 193 (392)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 483
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.84 E-value=3 Score=39.64 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=44.4
Q ss_pred CCCCeEEEEeCCCeEEEEEEeC---Ccccee-e----------ccccCC-----CCCCCCCeEEEEecC----CCCEEEE
Q 016257 73 PSGDDFVCSTTNGGCKLFEVYG---GATDIN-L----------LAKKMP-----PLQDAGPQKCLSFSV----DGSRFAA 129 (392)
Q Consensus 73 p~~~~l~~~~~d~~i~iw~~~~---~~~~~~-~----------~~~~~~-----~~~~~~~v~~~~~s~----~~~~l~~ 129 (392)
++...++.+..||.+....... ...... . ...-.. ..........++.+. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666888888999888888765 111100 0 000000 001123455666666 6779999
Q ss_pred EeCCCcEEEEeCCCCceeec
Q 016257 130 GGVDGHLRIMHWPSLRIILD 149 (392)
Q Consensus 130 ~~~dg~i~i~d~~~~~~~~~ 149 (392)
.+.|+++|+||+.+++++..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EETTSEEEEEETTTTCEEEE
T ss_pred EeCCCeEEEEECCCCeEEEE
Confidence 99999999999999988543
No 484
>PLN02153 epithiospecifier protein
Probab=88.67 E-value=17 Score=32.21 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=33.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeecccC-----CCCcEEEEEecCCCCeEEEEcCC-----------CcEEEE
Q 016257 123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD-----------GSARIW 181 (392)
Q Consensus 123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-----------~~i~vw 181 (392)
+++.++.|+.+ ..+.+||.++.+-...... ........+..-+++.++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45566666643 3578889877554321110 11111111222345666666643 247788
Q ss_pred ECCCCee
Q 016257 182 KTEDGVA 188 (392)
Q Consensus 182 d~~~~~~ 188 (392)
|.++.+-
T Consensus 165 d~~~~~W 171 (341)
T PLN02153 165 NIADGKW 171 (341)
T ss_pred ECCCCeE
Confidence 8876543
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=22 Score=36.57 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=27.5
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC
Q 016257 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG 95 (392)
Q Consensus 63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~ 95 (392)
......++|+|....+|.+...|.|+++-...-
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccce
Confidence 346778999999999999999999999876543
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.69 E-value=7 Score=30.57 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.3
Q ss_pred ceEEEEecCCCCcce-EEEEEEeCCccEEEEEeCCC
Q 016257 199 KIELCRFSKDGTKPF-LFCTVQRGDKALLAVYDIST 233 (392)
Q Consensus 199 ~v~~~~~~~~~~~~~-~~~~~~~~~d~~i~v~d~~~ 233 (392)
.+..++|||.|-... -.++++-..++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 689999999764322 23367778889999997653
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.55 E-value=10 Score=38.89 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=82.3
Q ss_pred eCCCcEEEEeCCCCceeecccCCCCcEEEEEe--------cCCCCeEEEEcCCCcEEEEECCCCee-------eEEEecC
Q 016257 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--------SLDSEFLATTSTDGSARIWKTEDGVA-------WTFLTRN 195 (392)
Q Consensus 131 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~--------~~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~ 195 (392)
+-|+.+.+|+.+++.....+.+....|..+.. -|.=++++....--.|.++-+.-.+. ...+...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35889999999986665555444444554432 22223333333345566665432111 0111111
Q ss_pred -CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC--Cc---e-e----------------eeeec-ccCCCcEEEE
Q 016257 196 -SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TW---N-K----------------IGHKR-LLRKPASVLS 251 (392)
Q Consensus 196 -~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~---~-~----------------~~~~~-~~~~~v~~~~ 251 (392)
.+..|.++....+|+ ++.++.||.|+-.-.. .+ + + +..+. .+..+|..++
T Consensus 176 ~dg~~V~~I~~t~nGR------IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR------IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred cCCceEEEEEeccCCc------EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 234688899888888 5777777744322111 10 0 0 11122 3466899999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCC
Q 016257 252 ISLDGKYLAMGSKDGDICVVDVKK 275 (392)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~iwd~~~ 275 (392)
+......+++-++.|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 998889999999999999999976
No 488
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.18 E-value=3.6 Score=22.88 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=24.1
Q ss_pred CCCCeEEEEc-CCCcEEEEECCCCeeeEEEecC
Q 016257 164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRN 195 (392)
Q Consensus 164 ~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~ 195 (392)
|++++|+++. .+++|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5677666654 5789999999888887777653
No 489
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.79 E-value=2.4 Score=41.34 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=78.7
Q ss_pred eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC---CCCeEEEEeCCCeEEEEEEeCCccceeeccccC-CCCC--
Q 016257 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQ-- 110 (392)
Q Consensus 37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~-- 110 (392)
+.+|.++.-.+++.. .+.......-...+.-+.|.| +.-++..+..++++++.+...... .+...+. ....
T Consensus 155 lfVy~vd~l~G~iq~-~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 155 LFVYDVDVLQGEIQP-QLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMA 231 (1283)
T ss_pred hheeehHhhcccccc-ceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHH
Confidence 457887765444432 122222222334455666665 566778888888888877665432 1111000 0000
Q ss_pred --CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CC----ceeecccCCCC--cEEEEEecCCC---------CeEEEE
Q 016257 111 --DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SL----RIILDEPKAHK--SVLDMDFSLDS---------EFLATT 172 (392)
Q Consensus 111 --~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~----~~~~~~~~~~~--~i~~i~~~~~~---------~~l~~~ 172 (392)
..+.+.--..||||+.++.+..||.++.|.+. ++ ++......|.+ .+..+ ++... .+++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEec
Confidence 01122223379999999999999999888763 22 23333344442 23333 43321 123333
Q ss_pred c-CCCcEEEEECCCCeee
Q 016257 173 S-TDGSARIWKTEDGVAW 189 (392)
Q Consensus 173 ~-~d~~i~vwd~~~~~~~ 189 (392)
+ .+..+++|....-+|+
T Consensus 311 td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccCCcceeEeeccchhhh
Confidence 3 4566888887655554
No 490
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.77 E-value=19 Score=30.89 Aligned_cols=61 Identities=8% Similarity=-0.081 Sum_probs=38.7
Q ss_pred CcEEEEECCCCCEEEEEeCCCcEEEEecCCce---eeeeeecccc-CcceEEEEEee--CCCeEEEE
Q 016257 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKME---INHWSKRLHL-GTSIALVEFCP--TQRVVLTA 306 (392)
Q Consensus 246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~ 306 (392)
....++++++|.++++--..+.|..|+..+.- ....+..... -..+.++++.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 55678889999888888889999999988621 1112212221 24678888888 66654444
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.54 E-value=37 Score=33.89 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee----ecc----------c---cCcceEEEEEeeCCCeEEEEe
Q 016257 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS----KRL----------H---LGTSIALVEFCPTQRVVLTAS 307 (392)
Q Consensus 245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~----------~---~~~~i~~~~~s~~~~~l~~~~ 307 (392)
..|.+++...-+.+++..-.||+|.++|..+.+.+... ... . ....+..++|||++-.++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667777777889999999999999998887544333 100 0 011344588999999999999
Q ss_pred CCCeEE
Q 016257 308 KEWGAM 313 (392)
Q Consensus 308 ~dg~i~ 313 (392)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999877
No 492
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.43 E-value=36 Score=33.60 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC----------Cce---eecc--------cCCCCcEEEEEecCC---CC
Q 016257 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI---ILDE--------PKAHKSVLDMDFSLD---SE 167 (392)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~---~~~~--------~~~~~~i~~i~~~~~---~~ 167 (392)
.-.|..+.++|+|++++..+..| |.|..+.. ++. .... ......|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34788999999999999888766 44444421 111 1111 122237899999995 47
Q ss_pred eEEEEcCCCcEEEEECCCC
Q 016257 168 FLATTSTDGSARIWKTEDG 186 (392)
Q Consensus 168 ~l~~~~~d~~i~vwd~~~~ 186 (392)
.|+.-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888889999999999754
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.35 E-value=3.9 Score=22.44 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=19.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEe-CC--CeEEEE
Q 016257 62 SEGDPMTIAVNPSGDDFVCST-TN--GGCKLF 90 (392)
Q Consensus 62 h~~~v~~~~~sp~~~~l~~~~-~d--~~i~iw 90 (392)
..+.-....|+|||+.|+.++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 355677899999999888655 34 555554
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.17 E-value=29 Score=33.62 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (392)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~ 189 (392)
+....+.++.-+|.++.++.++.||+|++|++-..+.. .+-....+-..+.|...| |+++..|+.+.-|. ++|...
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq 87 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ 87 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcch
Q ss_pred EEE--ecCCCcceEEEEecCCCCcceEEEE-------------------------EEeCCccEEEEEeCCCceeeeeecc
Q 016257 190 TFL--TRNSDEKIELCRFSKDGTKPFLFCT-------------------------VQRGDKALLAVYDISTWNKIGHKRL 242 (392)
Q Consensus 190 ~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------~~~~~d~~i~v~d~~~~~~~~~~~~ 242 (392)
+.+ .........++...|..+. + .+--.-..+.+-|+.++........
T Consensus 88 qqfdyndqsekefss~~cdptaqn-----vvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~ 162 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQN-----VVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISH 162 (1636)
T ss_pred hhccccchhhhhccceecCchhhh-----hhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeec
Q ss_pred cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc--------ceEEEEEeeCCCeEEEEeCCCeE
Q 016257 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT--------SIALVEFCPTQRVVLTASKEWGA 312 (392)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~dg~i 312 (392)
..-.|..+.+--..+|++.-+... |.|=|+.+.......-++. ++ .-.|+.|+...-.++--+.|+++
T Consensus 163 ~g~aidelkilgkdryli~~ts~s-iii~d~es~rfsei~wqgs-gg~ekfffd~~n~cli~nageltlveyg~d~sl 238 (1636)
T KOG3616|consen 163 KGLAIDELKILGKDRYLIAHTSES-IIIADLESNRFSEIAWQGS-GGHEKFFFDFENCCLIFNAGELTLVEYGNDDSL 238 (1636)
T ss_pred CCcchhhhhhccccceEEeecccc-EEEeecccchhhhhhcccC-CCcceeeeecCcEEEEEecCeeEEEEecCCCcc
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.95 E-value=16 Score=33.62 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEe---------CCCCceee---cc--------cCCCCcEEEEEecCCC---CeE
Q 016257 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMH---------WPSLRIIL---DE--------PKAHKSVLDMDFSLDS---EFL 169 (392)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d---------~~~~~~~~---~~--------~~~~~~i~~i~~~~~~---~~l 169 (392)
-.|..+..++.|..++-.+.+|.+.++= +++++... ++ ...+-.+...+|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4577888899999999888888665542 13343211 11 1112256788999965 567
Q ss_pred EEEcCCCcEEEEECCCCeee
Q 016257 170 ATTSTDGSARIWKTEDGVAW 189 (392)
Q Consensus 170 ~~~~~d~~i~vwd~~~~~~~ 189 (392)
..-+.|..|++||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 77778999999998765443
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.18 E-value=24 Score=30.57 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=38.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECC
Q 016257 123 DGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE 184 (392)
Q Consensus 123 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~ 184 (392)
++++|+.|+++| +.+.++... .... ...+...|+.+...+..+.|++-+ ....++++++.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~-kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLE-KLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeE-EecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 336899999888 555555432 2222 223445899999988777665544 44459999984
No 497
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.54 E-value=55 Score=34.08 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=81.8
Q ss_pred EEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEE--------ecCCCCcceEEEEEEeCCccEEEEE
Q 016257 159 DMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR--------FSKDGTKPFLFCTVQRGDKALLAVY 229 (392)
Q Consensus 159 ~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~~~d~~i~v~ 229 (392)
.+-+-| -++.-++ -|..+.+|+.+++.....+..-.. .|..+. |-|.=+++ ++.+ .--.|.++
T Consensus 83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh-tIl~V~LvkPkpgvFv~~Iqhl----Lvva-T~~ei~il 154 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSH-TILKVGLVKPKPGVFVPEIQHL----LVVA-TPVEIVIL 154 (1311)
T ss_pred eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhh-hheeeeeecCCCCcchhhhhee----EEec-ccceEEEE
Confidence 333444 3444444 368899999998666555543222 233322 22332331 1111 12234444
Q ss_pred eCCC----cee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec----CCc---e-ee-------------
Q 016257 230 DIST----WNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV----KKM---E-IN------------- 279 (392)
Q Consensus 230 d~~~----~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~----~~~---~-~~------------- 279 (392)
-+.. +.. ...+...+..|+++....+|+.+++|- || .+|.+ ..+ + +.
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 3221 111 012223356788999888888887765 44 34433 111 1 00
Q ss_pred ---eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257 280 ---HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (392)
Q Consensus 280 ---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 319 (392)
..+...+ ..+|..++.......+.+-+..|+|.+|++..
T Consensus 232 Ps~~~~~~~~-~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 232 PSLLSVPGSS-KDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhcCCCCC-CCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0011133 67999999998888999999999999999976
No 498
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.16 E-value=33 Score=31.25 Aligned_cols=288 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred cCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe-cCCCCEEEEEeCCCcEEEEeC--CCCc---
Q 016257 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHW--PSLR--- 145 (392)
Q Consensus 72 sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~--~~~~--- 145 (392)
..+...|++|+.+|.++||+....+....-..-+...-..--.+.+-.| +......++.-.-.++.+|.+ ..+.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Q ss_pred ----eeecccCCCC--cEEEEEecC-----CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257 146 ----IILDEPKAHK--SVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (392)
Q Consensus 146 ----~~~~~~~~~~--~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (392)
.+.....|+- ....++.-| ...+|.+-+.||.+.+|+-+.-.....+.. ---...+.|.+....
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDs--- 188 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDS--- 188 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCE---
Q ss_pred EEEEEeCCccEEEEEeC---------------------CCceeeeeecccCC----CcEEEEECCCCCEEEEEeCCCcEE
Q 016257 215 FCTVQRGDKALLAVYDI---------------------STWNKIGHKRLLRK----PASVLSISLDGKYLAMGSKDGDIC 269 (392)
Q Consensus 215 ~~~~~~~~d~~i~v~d~---------------------~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~ 269 (392)
+++++.+..+.-|.. ...+........-+ .+..+.++.....+++-++..
T Consensus 189 --fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~--- 263 (418)
T PF14727_consen 189 --FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERS--- 263 (418)
T ss_pred --EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecce---
Q ss_pred EEecCCceeeeeeeccccCcceEEEEEee----CCC---eEEEEeCCCeEEEEEeecC---ccccceeeeeeeeeeeeec
Q 016257 270 VVDVKKMEINHWSKRLHLGTSIALVEFCP----TQR---VVLTASKEWGAMITKLTVP---ADWKEWQIYSLLLALFLAS 339 (392)
Q Consensus 270 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~---~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~ 339 (392)
++=++..-.++...+.. -.+.....+.. ++. .++.++.++++.||.=... .......+...........
T Consensus 264 Lf~l~~~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~ 342 (418)
T PF14727_consen 264 LFCLKDNGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLK 342 (418)
T ss_pred EEEEcCCCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCC
Q ss_pred eEEEEeeecceeeeecccccccccCCCCccc
Q 016257 340 AVVFYIFFENSDSFWNFPVARNQHGGPKIES 370 (392)
Q Consensus 340 ~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~ 370 (392)
+.+.+.+.+|.+.+==+.+...+...|+.+.
T Consensus 343 G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~~ 373 (418)
T PF14727_consen 343 GLIVSLSDEGQLSVSYLGTDPSLFQVPPLES 373 (418)
T ss_pred ceEEEEcCCCcEEEEEeCCCCccccCCCccc
No 499
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=84.16 E-value=8.1 Score=36.46 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC---
Q 016257 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--- 111 (392)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--- 111 (392)
+.+.+-+++ .......|+.|..++..++|.+.+..+++++-.| ..|.+++..+.............-+
T Consensus 295 ~~vivkdf~--------S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t~~~~~qs~~~s~ra 365 (788)
T KOG2109|consen 295 NLVIVKDFD--------SFADIRQFKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCTVNVSDQSLVVSPRA 365 (788)
T ss_pred ceEEeeccc--------chhhhhheeeecCcccccccccCceEEEEEeecc-ceeeeEEeccccccccccccccccchhc
Q ss_pred --CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCe----EEEEcCCCcEEEEECCC
Q 016257 112 --AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF----LATTSTDGSARIWKTED 185 (392)
Q Consensus 112 --~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~----l~~~~~d~~i~vwd~~~ 185 (392)
...+..++|+...+++..++.+|.= .+......+......-...-....+.. +++.+....-..|-..+
T Consensus 366 ~t~aviqdicfs~~s~~r~~gsc~Ge~-----P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s~~asS 440 (788)
T KOG2109|consen 366 NTAAVIQDICFSEVSTIRTAGSCEGEP-----PALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHSYTASS 440 (788)
T ss_pred chHHHHHHHhhhhhcceEeecccCCCC-----cccccccccchhhchhhhccccccCcccceeeeeccccccccccccce
Q ss_pred CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC
Q 016257 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (392)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 265 (392)
-.............+.......... -....-..+.++.-...-.++..-.|......+.|+++++.+.++...
T Consensus 441 v~s~s~~pd~ks~gv~~gsv~k~~q-------~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~ 513 (788)
T KOG2109|consen 441 VFSRSVKPDSKSVGVGSGSVTKANQ-------GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADAN 513 (788)
T ss_pred eeccccccchhhccceeeeccccCc-------cchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceeccccc
Q ss_pred CcE-EEE---------ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257 266 GDI-CVV---------DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (392)
Q Consensus 266 g~i-~iw---------d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 317 (392)
+.. .++ .+..-..+....++.....+..++|+.|.++++....-++-.++..
T Consensus 514 e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~~TthVfk~ 575 (788)
T KOG2109|consen 514 ENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNHATTHVFKV 575 (788)
T ss_pred ccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchhhhhhhhcCCceeeeee
No 500
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.41 E-value=46 Score=32.37 Aligned_cols=181 Identities=22% Similarity=0.191 Sum_probs=0.0
Q ss_pred CeEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCc----EEE
Q 016257 114 PQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS----ARI 180 (392)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~----i~v 180 (392)
.+.....+|.+..++..... ..+.+-|... .........+..+.|+|++..++..+.++. +++
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l 89 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL 89 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE
Q ss_pred EECCCCeeeEEEecCCCcceEEEEecCCCCcceE---------------------EEEEEeC-CccEEEEEeCCCceeee
Q 016257 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL---------------------FCTVQRG-DKALLAVYDISTWNKIG 238 (392)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------------~~~~~~~-~d~~i~v~d~~~~~~~~ 238 (392)
.+.. + ........+....|+|++..... ......+ ....+.+.|... ...
T Consensus 90 ~~~~-g-----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~--~~~ 161 (620)
T COG1506 90 VDVG-G-----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES--KLI 161 (620)
T ss_pred EecC-C-----ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc--ccc
Q ss_pred eecccCCCcEEEEECCCCCEEEEEeCCCc-------EEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257 239 HKRLLRKPASVLSISLDGKYLAMGSKDGD-------ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (392)
Q Consensus 239 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 309 (392)
........+....+++++..++....+.. ..++...++........ ...+..+.|.++|+.++..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 162 KLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPG---EGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred cccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCC---CceeeeeeeCCCCCeeEEeccC
Done!