BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016258
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1
SV=1
Length = 625
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 72 IPPKCPFGY--DAQSFKIGP------LSCMICQALLFECSKCTPCSHVYCKACISRFKD- 122
+P CP G ++++ + P L+C+ICQ LL +C PC H +C AC S + +
Sbjct: 238 VPASCPIGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMER 297
Query: 123 ---CPLCGADIEKIEADTTLQDVVDRFIEGHARIKRS 156
CP C +E+I + L ++V+ ++ H RS
Sbjct: 298 SSLCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRS 334
>sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1
Length = 637
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
L+C+ICQ LL++C PC H +C AC S + + CP C +E+I + L ++V+
Sbjct: 275 LTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSSFCPTCRCPVERIRKNHILNNLVEA 334
Query: 146 FIEGH 150
++ H
Sbjct: 335 YLLQH 339
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2
Length = 664
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
L+C+ICQ LL +C PC H +C AC S + + CP C +E+I + L ++V+
Sbjct: 302 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 361
Query: 146 FIEGHARIKRS 156
++ H RS
Sbjct: 362 YLIQHPDKSRS 372
>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1
Length = 664
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
L+C+ICQ LL +C PC H +C AC S + + CP C +E+I + L ++V+
Sbjct: 301 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 360
Query: 146 FIEGHARIKRS 156
++ H RS
Sbjct: 361 YLIQHPDKSRS 371
>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2
SV=1
Length = 626
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
L+C+ICQ LL +C PC H +C AC S + + CP C +E+I + L ++V+
Sbjct: 265 LTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 324
Query: 146 FIEGHARIKRS 156
++ H RS
Sbjct: 325 YLIQHPEKCRS 335
>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1
Length = 571
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
L+C+ICQ LL +C PC H +C AC S + + CP C +E+I + L ++V+
Sbjct: 210 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 269
Query: 146 FIEGHARIKRS 156
++ H RS
Sbjct: 270 YLIQHPDKSRS 280
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I AD TL
Sbjct: 16 LMCVLCGGYFIDAATIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTL 75
Query: 140 QDVVDRFIEG---------------HARIKRSHTNSDKEEDEAGENKKVIYED 177
QD+V + + G H + ++ +++ + A E+K++I +D
Sbjct: 76 QDIVYKLVPGLFKGEMKRRRDFYAAHPSVDAANGSNEDRGEVADEDKRIITDD 128
>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1
SV=1
Length = 326
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 25/113 (22%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I AD TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTL 75
Query: 140 QDVVDRFIEG--HARIKR------SHTNSD----KEEDE---AGENKKVIYED 177
QD+V + + G +KR +H ++D ED A E+K++I +D
Sbjct: 76 QDIVYKLVPGLFKGEMKRRRDFYAAHPSADVANGSNEDRGEVADEDKRIITDD 128
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEGHAR--IKR------SHTNSD----KEEDE---AGENKKVIYED 177
QD+V + + G + +KR +H ++D ED A E+K++I +D
Sbjct: 76 QDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEDKRIITDD 128
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio rerio GN=bmi1a PE=1 SV=2
Length = 320
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 25/113 (22%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIIECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG---------------HARIKRSHTNSDKEEDEAGENKKVIYED 177
QD+V + + G H + ++ +++ + A E+K++I +D
Sbjct: 76 QDIVYKLVPGLFKNEMKRRRDFYAEHPSVDAANGSNEDRGEVADEDKRIITDD 128
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2 PE=1
SV=1
Length = 344
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C +C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLLSIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|Q7T3E6|BMI1B_DANRE Polycomb complex protein BMI-1-B OS=Danio rerio GN=bmi1b PE=2 SV=1
Length = 324
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C++C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCVLCGGYFIDATTIVECLHSFCKMCIVRYLETSKYCPICDVQVHKTKPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2 PE=1
SV=2
Length = 342
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
L C +C + + C H +CK CI R+ K CP+C + K I +D TL
Sbjct: 16 LMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLLSIRSDKTL 75
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 76 QDIVYKLVPG 85
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
+ C +C + + T C H +CK+CI ++ K CPLC I + ++ D +
Sbjct: 43 IVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPLCNIKIHETQPLLNLKLDRVM 102
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 103 QDIVYKLVPG 112
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
+ C +C + + T C H +CK+CI ++ K CPLC I + ++ D +
Sbjct: 43 IVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPLCNIKIHETQPLLNLKLDRVM 102
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 103 QDIVYKLVPG 112
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK--IEADTTLQDVV 143
L C IC+ L + S TPC H +C CI ++ CPLC +D+ + ++ + +Q++
Sbjct: 30 LRCHICKDFL-KASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEFLVQEIC 88
Query: 144 DRFIEGHARIKRSHTNSDKEEDEAGE 169
+++ +++ T S +EE++ E
Sbjct: 89 SSYVKLRGSLQKHLTISSQEEEKDNE 114
>sp|Q1JPS1|PCF5B_DANRE Polycomb group RING finger protein 5-B OS=Danio rerio GN=pcgf5b
PE=2 SV=1
Length = 232
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 139
++C +C+ L + + T C H +CK+CI + DCP CG + E + D TL
Sbjct: 16 ITCFVCKGYLIKPTTVTECLHTFCKSCIVQHFEDSNDCPKCGIQVHETNPLEMLRLDNTL 75
Query: 140 QDVVDRFIEG 149
++V+ + + G
Sbjct: 76 EEVIFKLVPG 85
>sp|A0JN86|PCGF5_BOVIN Polycomb group RING finger protein 5 OS=Bos taurus GN=PCGF5 PE=2
SV=1
Length = 255
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 139
++C IC+ L + + T C H +CK CI + DCP CG + E + D TL
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEMLRLDNTL 75
Query: 140 QDVVDRFIEG 149
++++ + + G
Sbjct: 76 EEIIFKLVPG 85
>sp|Q86SE9|PCGF5_HUMAN Polycomb group RING finger protein 5 OS=Homo sapiens GN=PCGF5 PE=1
SV=1
Length = 256
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 139
++C IC+ L + + T C H +CK CI + DCP CG + E + D TL
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEMLRLDNTL 75
Query: 140 QDVVDRFIEG 149
++++ + + G
Sbjct: 76 EEIIFKLVPG 85
>sp|Q3UK78|PCGF5_MOUSE Polycomb group RING finger protein 5 OS=Mus musculus GN=Pcgf5 PE=2
SV=1
Length = 256
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 139
++C IC+ L + + T C H +CK CI + DCP CG + E + D TL
Sbjct: 16 ITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEMLRLDNTL 75
Query: 140 QDVVDRFIEG 149
++++ + + G
Sbjct: 76 EEIIFKLVPG 85
>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3
SV=1
Length = 261
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
+ C +C + + T C H +CK+CI ++ K CP+C I + ++ D +
Sbjct: 43 IVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVM 102
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 103 QDIVYKLVPG 112
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 139
++C IC+ L + + T C H +CK+CI + +CP CG + E + D TL
Sbjct: 16 ITCSICRGYLIKPTAVTECLHTFCKSCIVQHFEESNECPECGIQVHETNPLEMLRLDKTL 75
Query: 140 QDVVDRFIEGHARIKRSHTNSD 161
++++ + + G R K H S+
Sbjct: 76 EEIIFKLVPG-LREKEEHQESE 96
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
L C IC L E C+H +C+ CIS +++ CP+C +I L + +DR
Sbjct: 390 LQCSICSELFIEAVTLN-CAHSFCQHCISEWRNRKDKCPMCWQNITSQTRSLVLDNCIDR 448
Query: 146 FIEG 149
+E
Sbjct: 449 MVEN 452
>sp|Q8R023|PCGF1_MOUSE Polycomb group RING finger protein 1 OS=Mus musculus GN=Pcgf1 PE=2
SV=2
Length = 259
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
+ C +C + + T C H +CK+CI ++ K CP+C I + ++ D +
Sbjct: 45 IVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVM 104
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 105 QDIVYKLVPG 114
>sp|Q9BSM1|PCGF1_HUMAN Polycomb group RING finger protein 1 OS=Homo sapiens GN=PCGF1 PE=1
SV=2
Length = 259
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
+ C +C + + T C H +CK+CI ++ K CP+C I + ++ D +
Sbjct: 45 IVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVM 104
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 105 QDIVYKLVPG 114
>sp|Q6DLV9|PCGF1_RAT Polycomb group RING finger protein 1 (Fragment) OS=Rattus
norvegicus GN=Pcgf1 PE=2 SV=1
Length = 243
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
+ C +C + + T C H +CK+CI ++ K CP+C I + ++ D +
Sbjct: 33 IVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVM 92
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 93 QDIVYKLVPG 102
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1
PE=1 SV=2
Length = 421
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACI------SRFKDCPLCGAD-----IEKIEADTT 138
LSC IC +L + + + C H +C+ CI + CP+C D +EK+ D
Sbjct: 14 LSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLGSTPLEKLRPDHN 73
Query: 139 LQDV 142
LQD+
Sbjct: 74 LQDL 77
>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2
SV=2
Length = 259
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEKIE------ADTTL 139
+ C +C + + T C H +CK+CI ++ K CP+C I + + D +
Sbjct: 45 IVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNHKLDRVM 104
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 105 QDIVYKLVPG 114
>sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila melanogaster GN=Psc PE=1
SV=2
Length = 1601
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACI------SRFKDCPLCGADIE----KIEADTTLQD 141
C +CQ L + C H +C +C+ RF CP C I I++DTTLQ
Sbjct: 263 CHLCQGYLINATTIVECLHSFCHSCLINHLRKERF--CPRCEMVINNAKPNIKSDTTLQA 320
Query: 142 VVDRFIEG 149
+V + + G
Sbjct: 321 IVYKLVPG 328
>sp|Q86T96|RN180_HUMAN E3 ubiquitin-protein ligase RNF180 OS=Homo sapiens GN=RNF180 PE=2
SV=2
Length = 592
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACISRF-KD------CPLCGADIEKIEADTTLQDVVD 144
C +C + F C PC H++C+ C+ KD CPLC I ++ T L +
Sbjct: 432 CAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTELNNATK 491
Query: 145 RFI-EGHARIKRSHTNSD 161
F + + +IK+S S+
Sbjct: 492 TFFTKEYLKIKQSFQKSN 509
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3
PE=2 SV=1
Length = 242
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK------IEADTTL 139
++C +C L + + T C H +C++C+ ++ + CP C I + I D T+
Sbjct: 15 ITCRLCNGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTM 74
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 75 QDIVYKLVPG 84
>sp|Q99NA9|PCGF6_MOUSE Polycomb group RING finger protein 6 OS=Mus musculus GN=Pcgf6 PE=1
SV=1
Length = 353
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQD 141
C IC+ L + + T C H +CK+CI R CP C + + I D LQD
Sbjct: 137 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQD 196
Query: 142 VVDRFI 147
+V + +
Sbjct: 197 IVYKLV 202
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2
SV=1
Length = 241
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK------IEADTTL 139
++C +C L + + T C H +C++C+ ++ + CP C I + I D T+
Sbjct: 15 ITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTM 74
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 75 QDIVYKLVPG 84
>sp|Q5XI70|PCGF6_RAT Polycomb group RING finger protein 6 OS=Rattus norvegicus GN=Pcgf6
PE=2 SV=1
Length = 351
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQD 141
C IC+ L + + T C H +CK+CI R CP C + + I D LQD
Sbjct: 135 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQD 194
Query: 142 VVDRFI 147
+V + +
Sbjct: 195 IVYKLV 200
>sp|Q5RAK3|RN180_PONAB E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii GN=RNF180 PE=2
SV=1
Length = 592
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACISRF-KD------CPLCGADIEKIEADTTLQDVVD 144
C +C + F C PC H++C+ C+ KD CPLC I ++ T L +
Sbjct: 432 CAVCLDVYFNPYMCYPCRHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTELNNATK 491
Query: 145 RFI-EGHARIKRSHTNSD 161
F + + +IK+S S+
Sbjct: 492 TFFTKEYLKIKQSFQKSN 509
>sp|Q9BYE7|PCGF6_HUMAN Polycomb group RING finger protein 6 OS=Homo sapiens GN=PCGF6 PE=1
SV=2
Length = 350
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQD 141
C IC+ L + + T C H +CK+CI R CP C + + I D LQD
Sbjct: 134 CSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQD 193
Query: 142 VVDRFI 147
+V + +
Sbjct: 194 IVYKLV 199
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK------IEADTTL 139
++C +C L + + T C H +C++C+ ++ + CP C I + I D T+
Sbjct: 15 ITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTM 74
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 75 QDIVYKLVPG 84
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1
SV=1
Length = 242
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK------IEADTTL 139
++C +C L + + T C H +C++C+ ++ + CP C I + I D T+
Sbjct: 15 ITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTM 74
Query: 140 QDVVDRFIEG 149
QD+V + + G
Sbjct: 75 QDIVYKLVPG 84
>sp|Q1XH18|TRI72_RABIT Tripartite motif-containing protein 72 OS=Oryctolagus cuniculus
GN=TRIM72 PE=1 SV=1
Length = 477
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIEKIEADTTLQ 140
LSC +C L F+ C H +C+AC+SR +CP C A T LQ
Sbjct: 12 LSCPLCLQL-FDAPVTAECGHSFCRACLSRVAGEPAADGTVNCPCCQAPTRPQALSTNLQ 70
Query: 141 DVVDRFIEGHARIKRSH 157
+ R +EG A++ + H
Sbjct: 71 --LARLVEGLAQVPQGH 85
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 84 SFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADI------EKI 133
SF L C +C L +E TPC H +C C+ R D CPLC + K
Sbjct: 418 SFDASDLECALCMRLFYE-PVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKY 476
Query: 134 EADTTLQDVVDRFIEGHARIKRSHTNSDKEE 164
+ +++++ +F+ + +R + EE
Sbjct: 477 SKNVIMEELIAKFLPEELKERRKLYEEEMEE 507
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 84 SFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADI------EKI 133
SF L C +C L +E TPC H +C C+ R D CPLC + K
Sbjct: 459 SFDASDLECALCMRLFYE-PVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKY 517
Query: 134 EADTTLQDVVDRFIEGHARIKRSHTNSDKEE 164
+ +++++ +F+ + +R + EE
Sbjct: 518 SKNVIMEELIAKFLPEELKERRKLYEEEMEE 548
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KD--CPLCGADIEKIEA-DT 137
I L C IC +F TPC H YC C++ + K+ CP C +DI I A +T
Sbjct: 25 IESLVCSICHDYMF-VPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDITTIPALNT 83
Query: 138 TLQDVVDRFIE-----GHARIKRSHTNSDKEEDEAGENKK 172
TLQ + +E K+ T KEE++ +K+
Sbjct: 84 TLQQYLSFILEKLRDQNDESFKKLLTTKTKEENDYKNDKE 123
>sp|Q3U827|RN180_MOUSE E3 ubiquitin-protein ligase RNF180 OS=Mus musculus GN=Rnf180 PE=1
SV=2
Length = 592
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 92 CMICQALLFECSKCTPCSHVYCKACISRF-KD------CPLCGADIEKIEADTTLQDVVD 144
C +C + F C PC H++C+ C+ KD CPLC I ++ T L +
Sbjct: 432 CAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFLQTELNNATK 491
Query: 145 RFI-EGHARIKRSHTNS 160
F + + +IK+S S
Sbjct: 492 TFFTKEYLKIKQSFQKS 508
>sp|Q8IUD6|RN135_HUMAN E3 ubiquitin-protein ligase RNF135 OS=Homo sapiens GN=RNF135 PE=1
SV=2
Length = 432
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLC---GADIEKIEADTT 138
L C+ICQ LL + PC H +C+ C+ +R CP C A + +T
Sbjct: 19 LGCIICQGLL-DWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQPHLRKNTL 77
Query: 139 LQDVVDRF 146
LQD+ D++
Sbjct: 78 LQDLADKY 85
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 90 LSCMICQALLFECSKCTPCSHVYCKACI------SRFKDCPLC-----GADIEKIEADTT 138
++C +C LL + + + C H +C+ CI + CP+C G +EK+ D
Sbjct: 18 MTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDIDLGGTPLEKLRPDHI 77
Query: 139 LQDV 142
LQD+
Sbjct: 78 LQDL 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,135,625
Number of Sequences: 539616
Number of extensions: 5758446
Number of successful extensions: 19711
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 19554
Number of HSP's gapped (non-prelim): 402
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)