Query 016258
Match_columns 392
No_of_seqs 257 out of 2429
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 99.1 2.5E-09 5.5E-14 108.4 17.7 174 193-381 209-384 (508)
2 KOG4367 Predicted Zn-finger pr 99.1 6.6E-11 1.4E-15 113.2 5.1 204 87-304 2-314 (699)
3 PF15227 zf-C3HC4_4: zinc fing 99.0 8.3E-11 1.8E-15 78.4 1.7 34 92-126 1-42 (42)
4 KOG1840 Kinesin light chain [C 98.9 4.1E-08 8.8E-13 99.7 18.0 172 194-380 294-466 (508)
5 TIGR00599 rad18 DNA repair pro 98.8 3.9E-09 8.4E-14 103.4 5.5 62 88-150 25-92 (397)
6 smart00504 Ubox Modified RING 98.8 4.5E-09 9.8E-14 76.7 4.2 56 89-145 1-62 (63)
7 PF13424 TPR_12: Tetratricopep 98.8 5.4E-08 1.2E-12 73.8 9.2 77 273-356 2-78 (78)
8 KOG0317 Predicted E3 ubiquitin 98.7 5.7E-09 1.2E-13 95.9 3.1 47 85-132 235-285 (293)
9 KOG0287 Postreplication repair 98.7 6.8E-09 1.5E-13 96.8 2.8 60 88-148 22-87 (442)
10 PLN03208 E3 ubiquitin-protein 98.7 9.1E-09 2E-13 90.4 3.4 44 88-132 17-80 (193)
11 KOG0823 Predicted E3 ubiquitin 98.6 1.7E-08 3.6E-13 90.3 3.1 44 88-132 46-96 (230)
12 PF04564 U-box: U-box domain; 98.6 2.9E-08 6.2E-13 74.7 3.8 61 88-149 3-70 (73)
13 KOG0320 Predicted E3 ubiquitin 98.6 8.1E-08 1.8E-12 82.3 5.0 47 86-132 128-179 (187)
14 PF14835 zf-RING_6: zf-RING of 98.6 3.4E-08 7.5E-13 70.4 2.1 54 89-143 7-65 (65)
15 PF13923 zf-C3HC4_2: Zinc fing 98.5 3.8E-08 8.3E-13 64.5 1.8 34 92-126 1-39 (39)
16 KOG2177 Predicted E3 ubiquitin 98.5 1.3E-07 2.7E-12 90.4 6.1 61 88-149 12-76 (386)
17 KOG4626 O-linked N-acetylgluco 98.5 5.9E-07 1.3E-11 90.6 9.5 102 225-351 348-449 (966)
18 PF13920 zf-C3HC4_3: Zinc fing 98.4 9.7E-08 2.1E-12 66.3 1.5 43 89-132 2-49 (50)
19 COG5432 RAD18 RING-finger-cont 98.4 1.9E-07 4.1E-12 85.6 2.7 58 89-147 25-88 (391)
20 PHA02929 N1R/p28-like protein; 98.4 1.4E-07 3E-12 86.5 1.9 51 88-138 173-234 (238)
21 PF13639 zf-RING_2: Ring finge 98.3 1.8E-07 3.9E-12 63.1 1.1 37 91-127 2-44 (44)
22 PF00097 zf-C3HC4: Zinc finger 98.3 3.4E-07 7.5E-12 60.6 1.9 34 92-126 1-41 (41)
23 PF14634 zf-RING_5: zinc-RING 98.3 5.9E-07 1.3E-11 60.5 2.9 38 91-128 1-44 (44)
24 PHA02926 zinc finger-like prot 98.3 3.2E-07 6.9E-12 81.6 1.7 52 88-139 169-238 (242)
25 COG5574 PEX10 RING-finger-cont 98.2 7.6E-07 1.7E-11 81.1 2.0 45 87-132 213-263 (271)
26 PF13424 TPR_12: Tetratricopep 98.1 4E-05 8.6E-10 57.9 10.5 77 228-308 2-78 (78)
27 PF13445 zf-RING_UBOX: RING-ty 98.1 1.5E-06 3.3E-11 57.9 1.5 27 92-120 1-31 (43)
28 KOG2660 Locus-specific chromos 98.1 1.4E-06 3.1E-11 81.8 1.5 63 88-150 14-86 (331)
29 KOG1130 Predicted G-alpha GTPa 98.1 6.2E-05 1.3E-09 73.1 12.5 137 231-380 195-331 (639)
30 cd00162 RING RING-finger (Real 98.0 3.7E-06 8.1E-11 56.1 2.8 39 91-129 1-44 (45)
31 KOG2164 Predicted E3 ubiquitin 98.0 1.7E-06 3.7E-11 85.6 1.2 43 89-132 186-237 (513)
32 smart00184 RING Ring finger. E 97.9 4.3E-06 9.3E-11 53.8 1.8 34 92-126 1-39 (39)
33 KOG4626 O-linked N-acetylgluco 97.9 5.4E-05 1.2E-09 76.9 10.1 86 276-381 354-439 (966)
34 KOG0311 Predicted E3 ubiquitin 97.9 1.4E-06 3.1E-11 82.3 -1.2 60 88-147 42-109 (381)
35 KOG1130 Predicted G-alpha GTPa 97.9 8.3E-05 1.8E-09 72.2 9.9 118 248-378 172-289 (639)
36 TIGR00570 cdk7 CDK-activating 97.8 1.7E-05 3.6E-10 75.1 4.7 58 88-145 2-74 (309)
37 PF14938 SNAP: Soluble NSF att 97.8 0.00066 1.4E-08 64.7 15.3 107 234-354 78-185 (282)
38 CHL00033 ycf3 photosystem I as 97.8 0.00092 2E-08 58.4 15.0 116 232-362 36-152 (168)
39 PF14938 SNAP: Soluble NSF att 97.7 0.0015 3.2E-08 62.3 16.1 127 239-379 43-170 (282)
40 KOG4159 Predicted E3 ubiquitin 97.6 4.6E-05 9.9E-10 75.1 3.6 64 87-151 82-156 (398)
41 PRK02603 photosystem I assembl 97.6 0.0024 5.1E-08 56.0 14.0 116 233-363 37-153 (172)
42 PF13374 TPR_10: Tetratricopep 97.6 0.00017 3.7E-09 47.2 4.9 40 323-362 1-42 (42)
43 KOG0978 E3 ubiquitin ligase in 97.5 3.7E-05 8.1E-10 79.9 0.9 44 88-132 642-690 (698)
44 KOG1173 Anaphase-promoting com 97.4 0.00061 1.3E-08 68.7 9.2 109 227-353 410-518 (611)
45 TIGR00990 3a0801s09 mitochondr 97.4 0.0018 3.9E-08 68.5 13.6 60 236-306 438-497 (615)
46 TIGR00990 3a0801s09 mitochondr 97.4 0.0029 6.2E-08 67.0 14.6 114 234-378 368-481 (615)
47 KOG1173 Anaphase-promoting com 97.4 0.00059 1.3E-08 68.8 8.7 103 278-387 416-522 (611)
48 TIGR02521 type_IV_pilW type IV 97.4 0.0038 8.2E-08 55.7 13.0 48 326-379 171-218 (234)
49 KOG0804 Cytoplasmic Zn-finger 97.4 0.00058 1.3E-08 66.8 7.8 41 88-128 174-219 (493)
50 PRK15359 type III secretion sy 97.3 0.0054 1.2E-07 52.3 11.9 115 236-381 29-143 (144)
51 PF13414 TPR_11: TPR repeat; P 97.3 0.0023 5E-08 46.8 8.4 64 276-353 3-67 (69)
52 COG5152 Uncharacterized conser 97.2 0.00016 3.4E-09 63.2 2.0 53 89-142 196-253 (259)
53 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00016 3.5E-09 54.2 1.7 37 91-127 21-73 (73)
54 CHL00033 ycf3 photosystem I as 97.2 0.0088 1.9E-07 52.1 12.6 91 274-381 33-123 (168)
55 TIGR02521 type_IV_pilW type IV 97.2 0.012 2.5E-07 52.5 13.8 148 189-379 37-184 (234)
56 KOG0824 Predicted E3 ubiquitin 97.0 0.0003 6.5E-09 65.5 2.0 49 90-139 8-62 (324)
57 KOG1813 Predicted E3 ubiquitin 97.0 0.00036 7.7E-09 64.8 2.4 51 88-139 240-295 (313)
58 COG5222 Uncharacterized conser 97.0 0.00077 1.7E-08 62.5 4.2 59 89-148 274-341 (427)
59 KOG0825 PHD Zn-finger protein 97.0 0.00013 2.8E-09 75.4 -1.2 45 88-132 122-172 (1134)
60 PRK02603 photosystem I assembl 96.9 0.014 3.1E-07 51.1 11.2 89 275-380 34-122 (172)
61 KOG2879 Predicted E3 ubiquitin 96.8 0.00096 2.1E-08 61.4 3.4 45 88-132 238-288 (298)
62 KOG4628 Predicted E3 ubiquitin 96.7 0.00075 1.6E-08 65.0 2.1 43 90-132 230-279 (348)
63 PF13176 TPR_7: Tetratricopept 96.7 0.0045 9.7E-08 39.4 4.9 31 326-356 1-31 (36)
64 PRK11447 cellulose synthase su 96.7 0.029 6.2E-07 63.9 14.6 148 192-374 278-429 (1157)
65 PRK11447 cellulose synthase su 96.6 0.037 7.9E-07 63.1 14.8 166 190-379 310-510 (1157)
66 PLN03088 SGT1, suppressor of 96.6 0.036 7.8E-07 54.7 13.0 113 238-381 9-121 (356)
67 PRK09782 bacteriophage N4 rece 96.5 0.036 7.8E-07 61.6 13.7 104 244-379 589-692 (987)
68 PRK11788 tetratricopeptide rep 96.5 0.06 1.3E-06 53.1 14.2 66 234-305 144-209 (389)
69 PF13432 TPR_16: Tetratricopep 96.5 0.021 4.5E-07 41.1 8.1 59 281-353 2-60 (65)
70 PRK15174 Vi polysaccharide exp 96.4 0.065 1.4E-06 57.3 14.6 115 233-378 248-366 (656)
71 KOG1125 TPR repeat-containing 96.4 0.0075 1.6E-07 61.2 6.8 32 326-357 500-531 (579)
72 KOG1126 DNA-binding cell divis 96.4 0.12 2.7E-06 53.4 15.4 89 278-380 491-607 (638)
73 KOG0802 E3 ubiquitin ligase [P 96.4 0.0016 3.5E-08 67.8 1.9 43 88-130 290-340 (543)
74 PRK15359 type III secretion sy 96.3 0.023 4.9E-07 48.4 8.6 81 280-380 28-108 (144)
75 COG5540 RING-finger-containing 96.3 0.002 4.4E-08 60.0 2.1 43 89-131 323-372 (374)
76 PF13176 TPR_7: Tetratricopept 96.3 0.011 2.4E-07 37.6 4.9 31 278-308 1-31 (36)
77 PRK15179 Vi polysaccharide bio 96.3 0.13 2.8E-06 55.2 15.5 125 192-355 95-219 (694)
78 TIGR02552 LcrH_SycD type III s 96.2 0.047 1E-06 45.2 9.8 97 233-354 19-115 (135)
79 KOG2376 Signal recognition par 96.2 0.078 1.7E-06 54.2 12.6 120 232-351 111-251 (652)
80 cd00189 TPR Tetratricopeptide 96.2 0.021 4.5E-07 42.2 6.9 93 236-353 5-97 (100)
81 KOG0297 TNF receptor-associate 96.2 0.0032 6.9E-08 62.7 2.8 44 88-132 20-68 (391)
82 PRK11189 lipoprotein NlpI; Pro 96.2 0.044 9.5E-07 52.6 10.5 96 232-352 65-160 (296)
83 KOG1002 Nucleotide excision re 96.1 0.0029 6.3E-08 63.1 2.1 66 49-132 513-587 (791)
84 PRK15363 pathogenicity island 96.1 0.15 3.2E-06 44.0 12.3 118 233-378 37-154 (157)
85 PF13374 TPR_10: Tetratricopep 96.1 0.015 3.2E-07 37.7 4.9 38 276-313 2-39 (42)
86 COG3063 PilF Tfp pilus assembl 96.1 0.12 2.7E-06 47.1 12.1 134 186-356 38-171 (250)
87 PRK09782 bacteriophage N4 rece 96.0 0.067 1.5E-06 59.5 12.2 98 232-354 610-707 (987)
88 PRK11788 tetratricopeptide rep 96.0 0.18 3.9E-06 49.6 14.2 61 233-304 109-169 (389)
89 TIGR03302 OM_YfiO outer membra 95.9 0.21 4.6E-06 45.6 13.6 166 186-380 36-219 (235)
90 PF11789 zf-Nse: Zinc-finger o 95.9 0.005 1.1E-07 43.7 2.1 36 89-125 11-53 (57)
91 KOG1155 Anaphase-promoting com 95.9 0.21 4.6E-06 49.9 13.8 108 225-357 392-499 (559)
92 KOG0553 TPR repeat-containing 95.9 0.29 6.4E-06 46.3 14.1 122 227-379 77-198 (304)
93 KOG1039 Predicted E3 ubiquitin 95.9 0.0039 8.5E-08 60.4 1.7 46 87-132 159-222 (344)
94 cd00189 TPR Tetratricopeptide 95.8 0.074 1.6E-06 39.2 8.4 81 279-379 3-83 (100)
95 TIGR02917 PEP_TPR_lipo putativ 95.8 0.14 3.1E-06 55.3 13.6 93 233-351 705-797 (899)
96 PRK15179 Vi polysaccharide bio 95.8 0.25 5.5E-06 52.9 15.0 121 227-378 82-202 (694)
97 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.06 1.3E-06 53.9 9.5 70 273-353 72-141 (453)
98 KOG1941 Acetylcholine receptor 95.7 0.57 1.2E-05 45.6 15.5 127 245-380 176-302 (518)
99 PRK10370 formate-dependent nit 95.7 0.092 2E-06 47.3 9.9 102 228-354 70-174 (198)
100 PRK15174 Vi polysaccharide exp 95.7 0.19 4.1E-06 53.7 13.8 24 234-257 113-136 (656)
101 KOG2003 TPR repeat-containing 95.7 0.078 1.7E-06 52.6 9.8 84 276-379 524-607 (840)
102 PRK12370 invasion protein regu 95.7 0.16 3.5E-06 53.1 12.9 45 326-376 443-487 (553)
103 PRK11189 lipoprotein NlpI; Pro 95.6 0.15 3.4E-06 48.8 11.6 83 276-378 64-146 (296)
104 COG5243 HRD1 HRD ubiquitin lig 95.5 0.006 1.3E-07 58.4 1.6 45 87-131 285-345 (491)
105 PRK04841 transcriptional regul 95.5 0.38 8.3E-06 53.2 16.0 112 235-357 495-606 (903)
106 TIGR02917 PEP_TPR_lipo putativ 95.5 0.22 4.8E-06 53.8 13.9 163 190-379 29-242 (899)
107 KOG4265 Predicted E3 ubiquitin 95.4 0.0079 1.7E-07 57.7 1.9 43 89-132 290-337 (349)
108 KOG4185 Predicted E3 ubiquitin 95.3 0.12 2.6E-06 49.5 9.9 58 89-146 3-77 (296)
109 KOG0548 Molecular co-chaperone 95.1 0.23 4.9E-06 50.4 11.2 102 273-380 295-408 (539)
110 PRK12370 invasion protein regu 95.1 0.15 3.2E-06 53.4 10.4 117 233-379 340-456 (553)
111 PF13414 TPR_11: TPR repeat; P 95.1 0.071 1.5E-06 38.7 5.9 49 324-378 3-51 (69)
112 PF00515 TPR_1: Tetratricopept 95.1 0.062 1.3E-06 33.2 4.7 31 324-354 1-31 (34)
113 PF12862 Apc5: Anaphase-promot 95.1 0.25 5.3E-06 38.7 9.2 67 288-359 10-76 (94)
114 TIGR02795 tol_pal_ybgF tol-pal 95.0 0.38 8.3E-06 38.2 10.7 100 235-353 6-105 (119)
115 KOG1941 Acetylcholine receptor 95.0 0.66 1.4E-05 45.2 13.3 97 276-380 246-347 (518)
116 PF12861 zf-Apc11: Anaphase-pr 94.9 0.02 4.4E-07 43.8 2.4 42 90-131 33-82 (85)
117 TIGR02552 LcrH_SycD type III s 94.8 0.18 3.9E-06 41.6 8.3 83 278-380 19-101 (135)
118 TIGR03302 OM_YfiO outer membra 94.8 0.76 1.6E-05 41.9 13.2 61 279-350 169-229 (235)
119 PLN03088 SGT1, suppressor of 94.7 0.24 5.2E-06 48.9 10.3 82 279-380 5-86 (356)
120 PF14447 Prok-RING_4: Prokaryo 94.7 0.015 3.3E-07 40.4 1.2 43 89-132 7-51 (55)
121 PRK04841 transcriptional regul 94.6 0.76 1.6E-05 50.8 15.0 128 237-378 458-587 (903)
122 KOG1785 Tyrosine kinase negati 94.6 0.015 3.2E-07 56.3 1.2 42 90-132 370-417 (563)
123 PRK10803 tol-pal system protei 94.5 0.38 8.3E-06 45.3 10.6 91 243-352 155-245 (263)
124 KOG0547 Translocase of outer m 94.4 0.42 9.1E-06 48.2 10.9 80 278-357 464-570 (606)
125 PF13429 TPR_15: Tetratricopep 94.4 0.49 1.1E-05 44.6 11.3 47 328-380 218-264 (280)
126 KOG1734 Predicted RING-contain 94.4 0.037 8E-07 51.0 3.3 45 88-132 223-282 (328)
127 PF07719 TPR_2: Tetratricopept 94.3 0.12 2.6E-06 31.7 4.7 29 325-353 2-30 (34)
128 KOG4692 Predicted E3 ubiquitin 94.3 0.026 5.6E-07 53.8 2.1 47 84-131 417-467 (489)
129 KOG4172 Predicted E3 ubiquitin 94.2 0.0056 1.2E-07 42.2 -1.7 42 90-132 8-55 (62)
130 PF13181 TPR_8: Tetratricopept 94.2 0.12 2.7E-06 31.7 4.6 30 325-354 2-31 (34)
131 KOG1155 Anaphase-promoting com 94.2 0.55 1.2E-05 47.1 11.2 113 244-380 343-482 (559)
132 PF12895 Apc3: Anaphase-promot 94.2 0.65 1.4E-05 35.1 9.6 83 244-350 2-84 (84)
133 TIGR02795 tol_pal_ybgF tol-pal 94.1 0.72 1.6E-05 36.6 10.2 87 279-379 5-91 (119)
134 KOG1645 RING-finger-containing 94.1 0.04 8.7E-07 53.7 3.0 51 89-139 4-66 (463)
135 KOG2002 TPR-containing nuclear 94.0 0.79 1.7E-05 49.7 12.7 92 278-379 416-511 (1018)
136 PF09976 TPR_21: Tetratricopep 94.0 0.73 1.6E-05 38.9 10.5 92 237-351 54-145 (145)
137 cd02682 MIT_AAA_Arch MIT: doma 94.0 0.63 1.4E-05 34.9 8.6 44 322-365 4-48 (75)
138 PRK15363 pathogenicity island 93.8 0.68 1.5E-05 40.0 9.8 83 278-380 37-119 (157)
139 PF12688 TPR_5: Tetratrico pep 93.8 0.95 2.1E-05 37.3 10.3 83 280-379 5-90 (120)
140 KOG1126 DNA-binding cell divis 93.7 0.34 7.3E-06 50.3 9.0 141 231-378 353-537 (638)
141 TIGR00540 hemY_coli hemY prote 93.6 1.6 3.4E-05 43.8 13.7 95 280-379 267-385 (409)
142 PF04641 Rtf2: Rtf2 RING-finge 93.5 0.14 3E-06 48.2 5.6 46 87-132 111-162 (260)
143 PRK10370 formate-dependent nit 93.5 0.54 1.2E-05 42.3 9.2 83 278-380 75-160 (198)
144 PF00515 TPR_1: Tetratricopept 93.3 0.23 5.1E-06 30.5 4.7 30 277-306 2-31 (34)
145 KOG0547 Translocase of outer m 93.3 0.32 7E-06 49.0 7.8 90 272-381 111-200 (606)
146 KOG4275 Predicted E3 ubiquitin 93.3 0.019 4E-07 53.5 -0.7 41 89-130 300-341 (350)
147 PF13371 TPR_9: Tetratricopept 93.2 0.38 8.1E-06 35.1 6.5 57 283-353 2-58 (73)
148 PF13429 TPR_15: Tetratricopep 93.2 0.65 1.4E-05 43.8 9.7 63 279-355 217-279 (280)
149 KOG3617 WD40 and TPR repeat-co 93.1 1.9 4.2E-05 46.2 13.4 165 192-357 809-1000(1416)
150 KOG4739 Uncharacterized protei 92.9 0.063 1.4E-06 49.0 2.2 59 89-147 3-64 (233)
151 COG5010 TadD Flp pilus assembl 92.5 2.6 5.7E-05 39.1 12.2 113 237-380 106-218 (257)
152 KOG2003 TPR repeat-containing 92.5 2.2 4.7E-05 42.8 12.2 51 324-380 626-676 (840)
153 KOG1585 Protein required for f 92.5 3.9 8.4E-05 38.0 12.9 92 278-378 73-164 (308)
154 KOG2932 E3 ubiquitin ligase in 92.4 0.079 1.7E-06 49.8 2.1 41 89-129 90-132 (389)
155 PF07719 TPR_2: Tetratricopept 92.4 0.38 8.3E-06 29.3 4.7 29 277-305 2-30 (34)
156 PF06552 TOM20_plant: Plant sp 92.4 5.9 0.00013 35.0 13.5 89 278-373 27-123 (186)
157 PF10516 SHNi-TPR: SHNi-TPR; 92.2 0.33 7.2E-06 31.3 4.2 33 325-357 2-34 (38)
158 PRK10803 tol-pal system protei 92.2 1.7 3.6E-05 41.0 10.8 83 283-379 150-232 (263)
159 KOG1586 Protein required for f 92.1 3.5 7.6E-05 38.0 12.2 62 241-307 83-145 (288)
160 cd05804 StaR_like StaR_like; a 92.1 1.4 3.1E-05 42.7 10.7 92 237-350 120-212 (355)
161 KOG4555 TPR repeat-containing 92.0 1.3 2.8E-05 37.2 8.4 31 276-306 43-73 (175)
162 KOG0543 FKBP-type peptidyl-pro 91.6 1.2 2.6E-05 44.0 9.2 73 274-346 206-279 (397)
163 PF13428 TPR_14: Tetratricopep 91.6 0.58 1.3E-05 30.9 5.1 41 326-372 3-43 (44)
164 KOG3617 WD40 and TPR repeat-co 91.5 13 0.00028 40.3 17.0 75 232-306 913-997 (1416)
165 cd05804 StaR_like StaR_like; a 91.5 1.2 2.7E-05 43.1 9.6 58 278-349 116-173 (355)
166 KOG1571 Predicted E3 ubiquitin 91.4 0.088 1.9E-06 50.7 1.3 42 88-132 304-348 (355)
167 PF09986 DUF2225: Uncharacteri 91.4 5.8 0.00013 36.1 13.2 79 274-353 116-194 (214)
168 KOG0553 TPR repeat-containing 91.3 1.7 3.7E-05 41.2 9.6 89 272-380 77-165 (304)
169 PF13181 TPR_8: Tetratricopept 91.2 0.6 1.3E-05 28.5 4.6 31 277-307 2-32 (34)
170 PF06552 TOM20_plant: Plant sp 91.2 2.3 4.9E-05 37.6 9.6 84 296-383 4-88 (186)
171 KOG3039 Uncharacterized conser 91.2 0.17 3.7E-06 46.1 2.8 44 89-132 221-271 (303)
172 KOG2076 RNA polymerase III tra 91.1 7.6 0.00016 42.1 15.1 126 190-354 146-271 (895)
173 COG3063 PilF Tfp pilus assembl 90.9 2.1 4.6E-05 39.3 9.5 75 281-373 74-148 (250)
174 KOG1125 TPR repeat-containing 90.7 1.8 4E-05 44.4 9.8 82 279-380 433-514 (579)
175 COG2956 Predicted N-acetylgluc 90.6 6.3 0.00014 38.0 12.7 21 330-350 220-240 (389)
176 PF10516 SHNi-TPR: SHNi-TPR; 90.6 0.62 1.3E-05 30.1 4.2 34 277-310 2-35 (38)
177 KOG0543 FKBP-type peptidyl-pro 90.5 7.9 0.00017 38.3 13.8 127 232-378 209-339 (397)
178 PF11793 FANCL_C: FANCL C-term 90.5 0.058 1.3E-06 40.0 -0.7 43 89-131 2-66 (70)
179 PF12895 Apc3: Anaphase-promot 90.4 0.81 1.8E-05 34.6 5.7 73 289-380 2-74 (84)
180 PRK10747 putative protoheme IX 90.3 8 0.00017 38.6 14.3 93 280-379 267-376 (398)
181 COG5236 Uncharacterized conser 90.1 0.34 7.4E-06 46.3 3.9 44 86-130 58-107 (493)
182 PRK15331 chaperone protein Sic 90.0 6.2 0.00014 34.3 11.2 120 237-388 43-162 (165)
183 PF05290 Baculo_IE-1: Baculovi 89.9 0.17 3.6E-06 41.9 1.4 44 89-132 80-133 (140)
184 KOG1814 Predicted E3 ubiquitin 89.7 0.34 7.3E-06 47.5 3.6 32 89-120 184-217 (445)
185 PRK10049 pgaA outer membrane p 89.6 6.3 0.00014 43.0 13.8 138 192-375 24-161 (765)
186 TIGR00540 hemY_coli hemY prote 89.5 1.3 2.8E-05 44.5 7.8 66 278-358 337-404 (409)
187 KOG1001 Helicase-like transcri 89.4 0.15 3.1E-06 54.3 1.0 39 90-130 455-499 (674)
188 PF08631 SPO22: Meiosis protei 89.4 19 0.00042 34.0 16.0 108 243-357 5-113 (278)
189 PF12688 TPR_5: Tetratrico pep 89.2 3.7 8.1E-05 33.8 9.0 96 238-352 8-103 (120)
190 PF09976 TPR_21: Tetratricopep 89.2 2.2 4.8E-05 35.9 8.1 84 278-379 50-133 (145)
191 KOG2002 TPR-containing nuclear 89.1 9.6 0.00021 41.7 14.0 136 192-357 655-795 (1018)
192 KOG3002 Zn finger protein [Gen 88.9 0.52 1.1E-05 45.1 4.3 60 86-146 45-105 (299)
193 KOG0548 Molecular co-chaperone 88.8 1.3 2.9E-05 45.0 7.1 90 279-374 5-114 (539)
194 PF13525 YfiO: Outer membrane 88.5 16 0.00034 32.8 13.5 166 187-381 9-195 (203)
195 PF14570 zf-RING_4: RING/Ubox 88.2 0.41 8.8E-06 32.6 2.2 39 92-130 1-47 (48)
196 PF04100 Vps53_N: Vps53-like, 88.2 7.8 0.00017 38.6 12.2 110 262-383 67-179 (383)
197 cd02683 MIT_1 MIT: domain cont 88.1 4.4 9.4E-05 30.6 8.0 39 324-362 6-45 (77)
198 KOG1174 Anaphase-promoting com 88.0 3.3 7.1E-05 41.2 9.0 102 226-353 397-500 (564)
199 PF04212 MIT: MIT (microtubule 88.0 6 0.00013 28.8 8.6 39 323-361 4-43 (69)
200 KOG1129 TPR repeat-containing 87.9 1.7 3.7E-05 41.9 6.8 97 235-353 362-458 (478)
201 KOG2796 Uncharacterized conser 87.6 12 0.00027 35.1 12.1 87 281-373 175-261 (366)
202 COG5010 TadD Flp pilus assembl 87.4 5.6 0.00012 37.1 9.8 116 192-346 109-224 (257)
203 PRK10747 putative protoheme IX 87.4 9 0.00019 38.3 12.3 62 279-355 331-392 (398)
204 PF14559 TPR_19: Tetratricopep 87.3 4.1 8.9E-05 28.9 7.4 60 288-368 3-63 (68)
205 PF13432 TPR_16: Tetratricopep 87.1 1.7 3.7E-05 30.8 5.2 45 330-380 3-47 (65)
206 PRK10049 pgaA outer membrane p 86.9 8.1 0.00018 42.2 12.6 124 237-378 278-407 (765)
207 PF10602 RPN7: 26S proteasome 86.8 8.2 0.00018 34.0 10.3 95 271-381 31-125 (177)
208 COG5219 Uncharacterized conser 86.7 0.25 5.5E-06 53.0 0.7 44 88-131 1468-1523(1525)
209 KOG0826 Predicted E3 ubiquitin 86.6 0.6 1.3E-05 44.5 3.1 43 88-130 299-345 (357)
210 PF12862 Apc5: Anaphase-promot 86.6 12 0.00027 29.0 10.2 82 243-334 10-91 (94)
211 COG4235 Cytochrome c biogenesi 86.6 21 0.00045 34.0 13.3 100 227-351 152-254 (287)
212 KOG3161 Predicted E3 ubiquitin 86.3 0.36 7.7E-06 49.8 1.5 40 88-128 10-54 (861)
213 KOG2076 RNA polymerase III tra 86.2 4.4 9.5E-05 43.8 9.4 87 276-381 414-500 (895)
214 KOG4555 TPR repeat-containing 86.2 10 0.00022 32.0 9.6 123 233-376 45-173 (175)
215 PF08631 SPO22: Meiosis protei 86.1 9.8 0.00021 36.0 11.2 94 287-386 4-99 (278)
216 COG3071 HemY Uncharacterized e 86.0 7.9 0.00017 38.2 10.4 62 278-354 330-391 (400)
217 smart00028 TPR Tetratricopepti 85.8 1.1 2.3E-05 25.5 3.0 28 326-353 3-30 (34)
218 KOG1129 TPR repeat-containing 85.7 5.1 0.00011 38.8 8.7 82 279-381 226-307 (478)
219 PLN03098 LPA1 LOW PSII ACCUMUL 85.6 3 6.5E-05 42.1 7.5 71 227-305 71-141 (453)
220 PRK10866 outer membrane biogen 85.5 20 0.00044 33.2 12.8 61 237-305 38-98 (243)
221 PF07800 DUF1644: Protein of u 85.5 0.44 9.5E-06 40.8 1.4 21 88-109 1-21 (162)
222 smart00744 RINGv The RING-vari 85.5 0.77 1.7E-05 31.4 2.4 37 91-127 1-49 (49)
223 PF10952 DUF2753: Protein of u 85.2 20 0.00044 29.7 11.6 79 279-357 4-83 (140)
224 PRK14720 transcript cleavage f 85.0 18 0.00039 40.0 13.7 131 233-375 118-268 (906)
225 cd02681 MIT_calpain7_1 MIT: do 84.5 12 0.00026 28.2 8.6 36 322-357 4-39 (76)
226 KOG3800 Predicted E3 ubiquitin 84.0 1 2.2E-05 42.3 3.3 42 91-132 2-52 (300)
227 COG1729 Uncharacterized protei 83.9 6.5 0.00014 36.9 8.5 92 242-352 152-243 (262)
228 cd02656 MIT MIT: domain contai 83.8 12 0.00026 27.7 8.6 39 324-362 6-45 (75)
229 PF02891 zf-MIZ: MIZ/SP-RING z 83.6 0.5 1.1E-05 32.5 0.8 40 90-129 3-50 (50)
230 PRK14574 hmsH outer membrane p 83.5 12 0.00025 41.3 11.6 21 283-303 109-129 (822)
231 COG5194 APC11 Component of SCF 83.0 0.85 1.8E-05 34.2 1.9 25 107-131 53-81 (88)
232 cd02678 MIT_VPS4 MIT: domain c 82.8 14 0.00031 27.4 8.6 39 324-362 6-45 (75)
233 PF07191 zinc-ribbons_6: zinc- 82.5 0.33 7.2E-06 35.7 -0.4 39 89-132 1-42 (70)
234 KOG0827 Predicted E3 ubiquitin 82.5 0.69 1.5E-05 45.0 1.6 41 90-130 5-55 (465)
235 PRK10153 DNA-binding transcrip 81.9 4.2 9.1E-05 42.2 7.2 91 279-384 423-515 (517)
236 PF13174 TPR_6: Tetratricopept 81.9 2.6 5.7E-05 25.1 3.6 27 326-352 2-28 (33)
237 smart00745 MIT Microtubule Int 81.8 17 0.00038 26.9 8.8 39 324-362 8-47 (77)
238 PRK14720 transcript cleavage f 81.7 4.6 9.9E-05 44.5 7.6 75 277-366 117-205 (906)
239 KOG1493 Anaphase-promoting com 81.6 0.4 8.6E-06 35.6 -0.3 42 90-131 32-81 (84)
240 PF13371 TPR_9: Tetratricopept 81.3 3.6 7.8E-05 29.7 4.9 45 331-381 2-46 (73)
241 KOG4234 TPR repeat-containing 81.1 9.8 0.00021 34.4 8.1 34 273-306 92-125 (271)
242 COG4783 Putative Zn-dependent 80.4 72 0.0016 32.5 15.5 100 234-351 343-452 (484)
243 KOG2817 Predicted E3 ubiquitin 80.2 1.2 2.6E-05 43.6 2.3 41 89-129 334-383 (394)
244 PLN03077 Protein ECB2; Provisi 79.6 43 0.00094 37.0 14.6 85 243-349 566-650 (857)
245 COG1516 FliS Flagellin-specifi 79.2 12 0.00025 31.4 7.5 63 321-383 28-93 (132)
246 COG2956 Predicted N-acetylgluc 79.0 13 0.00029 35.9 8.8 34 323-356 248-281 (389)
247 KOG0828 Predicted E3 ubiquitin 78.8 0.96 2.1E-05 45.4 1.2 44 89-132 571-635 (636)
248 smart00028 TPR Tetratricopepti 78.3 4 8.7E-05 22.9 3.6 28 278-305 3-30 (34)
249 PLN03218 maturation of RBCL 1; 77.3 71 0.0015 36.4 15.4 25 326-350 721-745 (1060)
250 KOG1585 Protein required for f 77.3 64 0.0014 30.2 12.3 94 278-381 53-148 (308)
251 KOG3970 Predicted E3 ubiquitin 77.3 3.2 7E-05 37.5 3.9 42 90-131 51-105 (299)
252 PF13428 TPR_14: Tetratricopep 77.3 6.1 0.00013 25.8 4.5 28 278-305 3-30 (44)
253 KOG2114 Vacuolar assembly/sort 77.2 1.4 3E-05 47.2 1.9 42 88-129 839-881 (933)
254 KOG3060 Uncharacterized conser 77.2 27 0.0006 32.7 10.0 91 283-379 93-203 (289)
255 PRK10866 outer membrane biogen 76.8 16 0.00035 33.8 8.8 82 282-377 38-119 (243)
256 PRK14574 hmsH outer membrane p 76.4 39 0.00085 37.3 12.8 157 190-379 41-218 (822)
257 COG1729 Uncharacterized protei 76.1 19 0.0004 33.9 8.8 80 287-380 152-231 (262)
258 KOG4362 Transcriptional regula 76.1 1.2 2.7E-05 46.8 1.2 43 89-132 21-70 (684)
259 cd02684 MIT_2 MIT: domain cont 75.9 29 0.00064 25.9 8.3 33 325-357 7-39 (75)
260 KOG1812 Predicted E3 ubiquitin 75.5 2.3 5E-05 42.3 2.9 58 89-147 146-223 (384)
261 KOG2180 Late Golgi protein sor 75.3 41 0.00088 35.9 11.7 101 271-383 91-194 (793)
262 KOG4340 Uncharacterized conser 75.2 5.8 0.00013 37.9 5.2 30 324-353 144-173 (459)
263 PHA03096 p28-like protein; Pro 75.1 1.6 3.5E-05 41.5 1.6 31 90-120 179-216 (284)
264 KOG1839 Uncharacterized protei 74.9 21 0.00046 40.4 10.2 123 226-357 968-1090(1236)
265 PF02561 FliS: Flagellar prote 74.8 23 0.0005 29.0 8.3 55 329-383 34-91 (122)
266 COG4783 Putative Zn-dependent 74.7 36 0.00079 34.6 10.9 83 279-382 343-426 (484)
267 PF09986 DUF2225: Uncharacteri 74.3 35 0.00077 31.0 10.1 84 291-381 92-182 (214)
268 PRK05685 fliS flagellar protei 73.8 27 0.00059 29.1 8.6 55 329-383 40-97 (132)
269 PF13174 TPR_6: Tetratricopept 73.7 6.6 0.00014 23.2 3.7 27 278-304 2-28 (33)
270 KOG3039 Uncharacterized conser 73.5 1.7 3.6E-05 39.9 1.2 31 89-120 43-73 (303)
271 COG4700 Uncharacterized protei 73.4 35 0.00076 30.6 9.3 57 237-303 95-151 (251)
272 KOG1118 Lysophosphatidic acid 73.0 16 0.00034 34.9 7.4 54 291-357 177-231 (366)
273 KOG2376 Signal recognition par 70.7 43 0.00093 35.0 10.5 72 283-357 117-208 (652)
274 PF13525 YfiO: Outer membrane 70.7 78 0.0017 28.2 11.8 64 233-304 7-70 (203)
275 KOG4445 Uncharacterized conser 70.6 1 2.2E-05 42.4 -0.9 31 90-120 116-148 (368)
276 PF10579 Rapsyn_N: Rapsyn N-te 70.3 29 0.00062 26.3 7.0 59 288-357 18-76 (80)
277 cd02677 MIT_SNX15 MIT: domain 70.2 43 0.00093 25.0 8.0 38 325-362 7-45 (75)
278 KOG0298 DEAD box-containing he 69.7 1.4 3.1E-05 49.2 -0.1 45 88-132 1152-1200(1394)
279 KOG4648 Uncharacterized conser 69.5 21 0.00045 34.9 7.6 96 279-374 100-209 (536)
280 KOG1839 Uncharacterized protei 69.4 21 0.00046 40.5 8.6 104 271-380 968-1073(1236)
281 COG5175 MOT2 Transcriptional r 68.4 2.5 5.4E-05 40.5 1.2 42 91-132 16-65 (480)
282 KOG1100 Predicted E3 ubiquitin 68.2 2.3 5E-05 38.5 0.9 39 92-131 161-200 (207)
283 PF13431 TPR_17: Tetratricopep 67.8 8.4 0.00018 23.8 3.2 22 323-344 12-33 (34)
284 KOG0545 Aryl-hydrocarbon recep 67.6 45 0.00097 31.2 9.0 68 278-345 180-251 (329)
285 PLN02789 farnesyltranstransfer 67.4 83 0.0018 30.5 11.6 28 325-352 143-170 (320)
286 PF14561 TPR_20: Tetratricopep 67.1 24 0.00051 27.4 6.3 22 326-347 24-45 (90)
287 PF10475 DUF2450: Protein of u 67.1 67 0.0015 30.6 10.8 47 336-382 139-185 (291)
288 KOG1952 Transcription factor N 66.9 10 0.00022 40.9 5.4 42 88-129 190-245 (950)
289 KOG2077 JNK/SAPK-associated pr 66.4 1.2E+02 0.0027 31.5 12.6 56 326-383 397-455 (832)
290 KOG4234 TPR repeat-containing 65.7 82 0.0018 28.7 10.0 101 233-353 97-197 (271)
291 KOG0624 dsRNA-activated protei 65.5 1.1E+02 0.0023 30.2 11.4 90 278-378 108-203 (504)
292 KOG3616 Selective LIM binding 64.6 33 0.00072 36.9 8.4 104 245-349 675-790 (1636)
293 KOG3785 Uncharacterized conser 64.6 87 0.0019 30.9 10.7 59 233-302 59-117 (557)
294 PLN03218 maturation of RBCL 1; 64.2 1.5E+02 0.0033 33.8 14.4 25 326-350 651-675 (1060)
295 PF10300 DUF3808: Protein of u 64.1 1.4E+02 0.0031 30.6 13.1 117 236-372 272-397 (468)
296 TIGR00208 fliS flagellar biosy 63.3 63 0.0014 26.6 8.5 55 329-383 36-93 (124)
297 KOG2930 SCF ubiquitin ligase, 63.2 4.5 9.8E-05 32.0 1.5 23 107-129 80-106 (114)
298 PF05883 Baculo_RING: Baculovi 62.6 3.4 7.3E-05 34.5 0.8 32 89-120 26-65 (134)
299 PF04733 Coatomer_E: Coatomer 61.2 26 0.00057 33.4 6.7 70 291-380 182-251 (290)
300 PF07721 TPR_4: Tetratricopept 61.1 11 0.00025 21.6 2.7 24 326-349 3-26 (26)
301 PF12569 NARP1: NMDA receptor- 60.8 1.5E+02 0.0033 30.8 12.6 117 233-360 196-341 (517)
302 KOG0545 Aryl-hydrocarbon recep 60.6 1.2E+02 0.0025 28.6 10.3 126 242-387 189-318 (329)
303 PF09295 ChAPs: ChAPs (Chs5p-A 60.2 91 0.002 31.3 10.5 25 326-350 236-260 (395)
304 KOG2471 TPR repeat-containing 59.9 15 0.00032 37.5 4.8 115 240-356 249-367 (696)
305 PRK03947 prefoldin subunit alp 59.7 20 0.00043 30.1 5.1 109 275-384 15-138 (140)
306 COG5220 TFB3 Cdk activating ki 59.6 2.8 6E-05 38.3 -0.2 44 88-131 9-64 (314)
307 PF10602 RPN7: 26S proteasome 58.3 34 0.00074 30.0 6.5 35 322-356 34-68 (177)
308 PF14559 TPR_19: Tetratricopep 58.1 19 0.00041 25.3 4.1 38 337-380 4-41 (68)
309 cd02680 MIT_calpain7_2 MIT: do 58.0 60 0.0013 24.3 6.7 31 327-357 9-39 (75)
310 COG5109 Uncharacterized conser 57.3 7.1 0.00015 37.2 2.0 40 89-128 336-384 (396)
311 KOG1586 Protein required for f 57.2 1.7E+02 0.0036 27.4 10.6 32 324-355 93-124 (288)
312 PF13779 DUF4175: Domain of un 56.9 1.4E+02 0.0029 33.1 11.9 73 284-357 493-573 (820)
313 KOG3268 Predicted E3 ubiquitin 56.7 8.6 0.00019 33.5 2.3 42 90-132 166-229 (234)
314 PF04124 Dor1: Dor1-like famil 56.3 1E+02 0.0022 30.0 10.1 47 330-376 112-158 (338)
315 KOG3579 Predicted E3 ubiquitin 56.2 17 0.00037 34.2 4.2 35 86-120 265-302 (352)
316 KOG1156 N-terminal acetyltrans 56.0 36 0.00077 35.9 6.9 83 298-380 22-125 (700)
317 KOG2034 Vacuolar sorting prote 56.0 4.6 0.0001 43.7 0.6 32 89-120 817-849 (911)
318 KOG1128 Uncharacterized conser 55.5 74 0.0016 34.1 9.2 70 283-352 492-581 (777)
319 TIGR03504 FimV_Cterm FimV C-te 55.5 21 0.00046 23.7 3.6 23 329-351 4-26 (44)
320 PF03704 BTAD: Bacterial trans 55.4 88 0.0019 25.8 8.4 87 286-378 16-110 (146)
321 KOG0550 Molecular chaperone (D 55.1 48 0.001 33.3 7.3 64 276-353 287-350 (486)
322 KOG1940 Zn-finger protein [Gen 53.8 9.8 0.00021 35.9 2.4 40 89-128 158-204 (276)
323 PF12569 NARP1: NMDA receptor- 53.6 1.2E+02 0.0027 31.5 10.6 72 283-374 11-82 (517)
324 KOG4162 Predicted calmodulin-b 51.9 2.2E+02 0.0047 30.9 11.9 63 279-355 721-785 (799)
325 PF11817 Foie-gras_1: Foie gra 51.8 2E+02 0.0043 26.6 12.3 88 246-346 152-240 (247)
326 PF10367 Vps39_2: Vacuolar sor 51.6 5.8 0.00012 31.4 0.4 31 88-118 77-108 (109)
327 PF10952 DUF2753: Protein of u 51.2 1E+02 0.0022 25.6 7.5 53 327-379 4-58 (140)
328 PF03704 BTAD: Bacterial trans 51.0 1.4E+02 0.003 24.6 12.7 77 272-362 58-135 (146)
329 cd07593 BAR_MUG137_fungi The B 51.0 1.1E+02 0.0023 28.0 8.6 17 341-357 188-204 (215)
330 cd07617 BAR_Endophilin_B2 The 51.0 1.4E+02 0.003 27.3 9.3 54 291-357 162-216 (220)
331 KOG2300 Uncharacterized conser 50.6 3.1E+02 0.0066 28.4 14.6 93 282-386 451-543 (629)
332 KOG1915 Cell cycle control pro 50.2 1.6E+02 0.0035 30.3 10.2 19 339-357 571-589 (677)
333 KOG2796 Uncharacterized conser 49.1 1.3E+02 0.0029 28.5 8.8 27 278-304 214-240 (366)
334 PHA02825 LAP/PHD finger-like p 49.1 19 0.00042 31.0 3.2 44 87-132 6-60 (162)
335 TIGR02302 aProt_lowcomp conser 48.8 2.3E+02 0.0049 31.5 12.0 73 284-357 524-603 (851)
336 PLN03081 pentatricopeptide (PP 48.8 2.6E+02 0.0057 30.0 12.7 23 327-349 465-487 (697)
337 PF05600 DUF773: Protein of un 48.7 2.8E+02 0.006 28.9 12.2 119 235-355 84-215 (507)
338 PF12854 PPR_1: PPR repeat 48.6 39 0.00086 20.7 3.9 26 324-349 7-32 (34)
339 PF09295 ChAPs: ChAPs (Chs5p-A 48.2 2.7E+02 0.0059 27.9 11.7 87 236-347 205-291 (395)
340 KOG1815 Predicted E3 ubiquitin 47.9 10 0.00023 38.5 1.7 33 88-120 69-101 (444)
341 PF11817 Foie-gras_1: Foie gra 47.8 1.2E+02 0.0027 28.0 8.8 77 294-379 156-233 (247)
342 COG3071 HemY Uncharacterized e 47.1 67 0.0015 31.9 6.9 108 186-305 266-390 (400)
343 cd02679 MIT_spastin MIT: domai 46.8 56 0.0012 24.8 5.1 24 334-357 18-41 (79)
344 COG2976 Uncharacterized protei 46.5 2.1E+02 0.0046 25.8 9.4 60 279-354 129-189 (207)
345 PRK04023 DNA polymerase II lar 46.1 19 0.00041 39.9 3.3 46 86-132 623-675 (1121)
346 PF10272 Tmpp129: Putative tra 45.9 11 0.00024 37.0 1.4 22 110-131 313-351 (358)
347 COG1382 GimC Prefoldin, chaper 45.6 1.7E+02 0.0037 24.0 10.1 60 324-384 53-114 (119)
348 PLN03081 pentatricopeptide (PP 45.3 68 0.0015 34.5 7.5 25 326-350 393-417 (697)
349 PF00244 14-3-3: 14-3-3 protei 45.0 2.5E+02 0.0055 25.8 10.4 85 292-383 142-227 (236)
350 PF03833 PolC_DP2: DNA polymer 44.8 7.2 0.00016 42.2 0.0 62 85-147 651-720 (900)
351 PLN03077 Protein ECB2; Provisi 44.6 4.7E+02 0.01 28.8 16.2 22 280-301 428-449 (857)
352 KOG2169 Zn-finger transcriptio 44.2 19 0.0004 38.5 3.0 60 89-148 306-375 (636)
353 PLN02789 farnesyltranstransfer 44.1 2.5E+02 0.0054 27.2 10.5 70 299-380 88-158 (320)
354 PF04910 Tcf25: Transcriptiona 43.4 1.3E+02 0.0029 29.6 8.7 60 291-357 9-73 (360)
355 cd02683 MIT_1 MIT: domain cont 43.2 1.4E+02 0.003 22.3 9.7 31 285-315 15-45 (77)
356 smart00101 14_3_3 14-3-3 homol 42.7 1.7E+02 0.0038 27.2 8.8 61 292-357 144-208 (244)
357 PF10571 UPF0547: Uncharacteri 42.4 13 0.00029 21.7 0.9 7 92-98 3-9 (26)
358 PF13805 Pil1: Eisosome compon 42.4 3E+02 0.0066 26.0 11.0 62 322-385 97-162 (271)
359 KOG1127 TPR repeat-containing 42.4 1.7E+02 0.0036 32.9 9.5 72 279-357 633-704 (1238)
360 COG4235 Cytochrome c biogenesi 42.0 1.1E+02 0.0025 29.1 7.5 28 278-305 158-185 (287)
361 cd02682 MIT_AAA_Arch MIT: doma 41.9 1.5E+02 0.0032 22.2 10.0 32 285-316 15-46 (75)
362 KOG0624 dsRNA-activated protei 41.9 3.6E+02 0.0078 26.7 12.2 34 262-302 216-249 (504)
363 COG4942 Membrane-bound metallo 41.8 3.3E+02 0.0071 27.5 10.9 39 345-383 115-161 (420)
364 COG2976 Uncharacterized protei 41.3 2.7E+02 0.0059 25.1 11.6 44 329-379 131-174 (207)
365 KOG2471 TPR repeat-containing 40.8 1.6E+02 0.0036 30.3 8.6 46 326-373 621-666 (696)
366 KOG4340 Uncharacterized conser 40.7 3.5E+02 0.0076 26.2 12.6 69 277-362 145-214 (459)
367 PRK15331 chaperone protein Sic 40.3 1.4E+02 0.0031 26.0 7.2 93 186-304 40-133 (165)
368 PF12968 DUF3856: Domain of Un 39.7 2.2E+02 0.0048 23.7 12.6 68 290-363 23-95 (144)
369 KOG1464 COP9 signalosome, subu 39.7 3E+02 0.0066 26.3 9.7 61 248-315 44-104 (440)
370 PLN03188 kinesin-12 family pro 39.6 2.3E+02 0.005 32.7 10.3 37 311-347 1180-1216(1320)
371 KOG0687 26S proteasome regulat 39.1 1.5E+02 0.0033 28.9 7.8 91 274-381 102-193 (393)
372 KOG1166 Mitotic checkpoint ser 38.8 4E+02 0.0086 30.1 12.1 102 271-382 58-167 (974)
373 PHA02862 5L protein; Provision 38.8 24 0.00053 29.8 2.2 41 90-132 3-54 (156)
374 cd07615 BAR_Endophilin_A3 The 38.3 3.2E+02 0.0069 25.1 10.4 55 290-357 157-212 (223)
375 KOG3842 Adaptor protein Pellin 37.5 23 0.0005 33.8 2.1 9 123-131 406-414 (429)
376 KOG3060 Uncharacterized conser 36.9 3.7E+02 0.008 25.4 15.2 65 277-355 155-222 (289)
377 PF06906 DUF1272: Protein of u 36.5 24 0.00053 24.7 1.6 22 110-131 29-52 (57)
378 KOG2908 26S proteasome regulat 36.0 4.3E+02 0.0094 26.0 10.5 80 288-375 87-167 (380)
379 PF13041 PPR_2: PPR repeat fam 35.5 86 0.0019 20.6 4.3 27 325-351 4-30 (50)
380 PF03491 5HT_transporter: Sero 35.4 29 0.00063 22.5 1.7 21 9-29 7-27 (42)
381 KOG0550 Molecular chaperone (D 35.2 89 0.0019 31.4 5.8 68 278-355 251-318 (486)
382 KOG3113 Uncharacterized conser 35.2 39 0.00085 31.3 3.1 45 88-132 110-159 (293)
383 KOG1156 N-terminal acetyltrans 35.0 5.9E+02 0.013 27.2 13.3 93 237-354 81-173 (700)
384 cd07594 BAR_Endophilin_B The B 34.8 2.1E+02 0.0045 26.4 7.9 17 341-357 209-225 (229)
385 KOG0508 Ankyrin repeat protein 34.8 1.5E+02 0.0032 30.4 7.3 99 272-379 294-394 (615)
386 COG3813 Uncharacterized protei 34.7 33 0.00071 25.3 2.1 30 109-138 28-61 (84)
387 PF03854 zf-P11: P-11 zinc fin 34.7 17 0.00038 24.5 0.6 40 90-132 3-47 (50)
388 KOG0976 Rho/Rac1-interacting s 34.6 2.8E+02 0.0061 30.4 9.5 46 329-374 401-447 (1265)
389 PRK06975 bifunctional uroporph 34.6 6.1E+02 0.013 27.3 14.6 79 273-357 378-457 (656)
390 KOG2047 mRNA splicing factor [ 34.4 1.8E+02 0.004 31.0 8.0 97 273-380 384-486 (835)
391 PF10497 zf-4CXXC_R1: Zinc-fin 34.2 27 0.00059 28.0 1.8 20 109-128 37-69 (105)
392 PF15015 NYD-SP12_N: Spermatog 33.6 3.7E+02 0.0079 27.4 9.6 82 269-351 170-255 (569)
393 KOG2041 WD40 repeat protein [G 33.5 4.9E+02 0.011 28.3 11.0 59 273-331 793-866 (1189)
394 KOG2047 mRNA splicing factor [ 33.4 5.7E+02 0.012 27.6 11.3 30 328-357 252-281 (835)
395 PF02259 FAT: FAT domain; Int 33.4 4.2E+02 0.0092 25.1 13.8 53 296-352 122-174 (352)
396 KOG1428 Inhibitor of type V ad 33.0 44 0.00096 38.7 3.6 45 88-132 3485-3545(3738)
397 smart00502 BBC B-Box C-termina 32.8 2.5E+02 0.0053 22.2 11.5 51 330-380 74-124 (127)
398 cd07613 BAR_Endophilin_A1 The 32.5 4E+02 0.0086 24.5 10.0 17 341-357 196-212 (223)
399 KOG3899 Uncharacterized conser 32.2 18 0.00039 34.1 0.5 25 108-132 325-366 (381)
400 cd00350 rubredoxin_like Rubred 31.9 38 0.00081 20.8 1.8 11 119-129 16-26 (33)
401 TIGR00293 prefoldin, archaeal 31.9 1.1E+02 0.0023 25.0 5.1 81 275-357 8-101 (126)
402 KOG3616 Selective LIM binding 31.7 7.3E+02 0.016 27.3 17.9 71 277-357 662-739 (1636)
403 PRK09343 prefoldin subunit bet 31.5 2.9E+02 0.0063 22.6 10.2 108 271-383 5-114 (121)
404 PF14853 Fis1_TPR_C: Fis1 C-te 31.3 1.4E+02 0.003 20.6 4.7 34 326-365 3-36 (53)
405 PF04184 ST7: ST7 protein; In 31.1 1.9E+02 0.0041 29.9 7.4 83 292-378 216-309 (539)
406 PF01535 PPR: PPR repeat; Int 30.9 86 0.0019 17.7 3.3 26 326-351 2-27 (31)
407 PF08746 zf-RING-like: RING-li 30.2 50 0.0011 21.7 2.3 35 92-126 1-43 (43)
408 PF14357 DUF4404: Domain of un 30.2 2.5E+02 0.0054 21.4 8.2 26 353-378 58-84 (85)
409 PRK10941 hypothetical protein; 30.1 3.8E+02 0.0082 25.3 9.0 66 272-351 177-242 (269)
410 KOG3726 Uncharacterized conser 30.0 27 0.00058 37.0 1.4 38 90-128 655-697 (717)
411 PF04212 MIT: MIT (microtubule 29.5 2.1E+02 0.0046 20.4 10.0 32 283-314 12-43 (69)
412 KOG1464 COP9 signalosome, subu 29.5 4.3E+02 0.0093 25.3 8.9 57 291-357 42-98 (440)
413 PF04216 FdhE: Protein involve 29.4 14 0.00029 35.3 -0.8 40 89-129 172-220 (290)
414 COG4105 ComL DNA uptake lipopr 29.3 4.8E+02 0.01 24.4 12.8 163 186-378 37-218 (254)
415 PF05605 zf-Di19: Drought indu 29.0 29 0.00063 23.9 1.0 32 89-128 2-39 (54)
416 PF13281 DUF4071: Domain of un 29.0 5.8E+02 0.013 25.4 10.4 63 291-353 241-334 (374)
417 cd00890 Prefoldin Prefoldin is 28.6 69 0.0015 26.0 3.4 83 274-357 7-102 (129)
418 cd07661 BAR_ICA69 The Bin/Amph 28.5 2.6E+02 0.0056 25.2 7.0 49 330-378 97-147 (204)
419 KOG4657 Uncharacterized conser 28.2 3.8E+02 0.0081 24.6 8.0 21 333-353 140-160 (246)
420 KOG2300 Uncharacterized conser 28.1 7E+02 0.015 25.9 13.1 125 248-380 292-420 (629)
421 KOG0376 Serine-threonine phosp 28.0 1.8E+02 0.004 29.7 6.7 89 288-376 16-118 (476)
422 COG0457 NrfG FOG: TPR repeat [ 27.4 3.5E+02 0.0075 22.2 9.9 57 286-355 177-233 (291)
423 TIGR00996 Mtu_fam_mce virulenc 27.4 5.2E+02 0.011 24.2 10.9 41 338-378 230-272 (291)
424 PF08969 USP8_dimer: USP8 dime 27.2 1.2E+02 0.0025 24.5 4.5 42 321-362 35-76 (115)
425 TIGR00756 PPR pentatricopeptid 26.6 1.3E+02 0.0029 17.2 3.8 25 327-351 3-27 (35)
426 PF04423 Rad50_zn_hook: Rad50 26.6 49 0.0011 22.8 1.8 11 122-132 22-32 (54)
427 PF10235 Cript: Microtubule-as 26.4 31 0.00068 26.8 0.8 37 89-131 44-80 (90)
428 PRK14714 DNA polymerase II lar 26.3 57 0.0012 37.3 3.1 58 88-146 666-740 (1337)
429 PF10158 LOH1CR12: Tumour supp 26.3 2.7E+02 0.0058 23.3 6.5 81 297-383 34-119 (131)
430 COG4700 Uncharacterized protei 26.2 94 0.002 28.0 3.9 24 329-352 94-117 (251)
431 PF06548 Kinesin-related: Kine 25.9 6.8E+02 0.015 25.6 10.1 36 313-348 412-447 (488)
432 KOG0508 Ankyrin repeat protein 25.8 45 0.00098 33.9 2.0 100 278-380 247-353 (615)
433 KOG2041 WD40 repeat protein [G 25.7 9E+02 0.02 26.4 13.2 73 278-350 854-936 (1189)
434 PF02259 FAT: FAT domain; Int 25.7 5.7E+02 0.012 24.1 12.1 118 232-356 147-290 (352)
435 cd00065 FYVE FYVE domain; Zinc 25.5 37 0.00079 23.4 1.0 29 91-119 4-35 (57)
436 PF13512 TPR_18: Tetratricopep 25.5 4.2E+02 0.0091 22.5 8.5 55 243-305 22-76 (142)
437 KOG0825 PHD Zn-finger protein 25.3 1.1E+02 0.0025 33.1 4.9 25 108-132 121-155 (1134)
438 TIGR00622 ssl1 transcription f 25.2 70 0.0015 26.0 2.7 38 90-127 56-110 (112)
439 KOG3993 Transcription factor ( 25.1 32 0.00069 34.3 0.9 44 85-132 263-307 (500)
440 TIGR01562 FdhE formate dehydro 25.0 23 0.00049 34.2 -0.2 40 89-129 184-233 (305)
441 COG1283 NptA Na+/phosphate sym 25.0 3.1E+02 0.0067 28.7 7.9 19 319-337 404-422 (533)
442 PF06844 DUF1244: Protein of u 25.0 32 0.0007 24.9 0.7 10 111-120 11-20 (68)
443 KOG2709 Uncharacterized conser 24.9 2.1E+02 0.0046 28.8 6.3 28 281-308 27-54 (560)
444 KOG1127 TPR repeat-containing 24.8 4.8E+02 0.01 29.6 9.4 49 298-353 17-66 (1238)
445 cd07616 BAR_Endophilin_B1 The 24.8 5.5E+02 0.012 23.6 10.0 17 341-357 209-225 (229)
446 PF13812 PPR_3: Pentatricopept 24.7 1.5E+02 0.0033 17.1 3.7 26 326-351 3-28 (34)
447 COG0068 HypF Hydrogenase matur 24.7 45 0.00097 35.7 1.9 45 88-132 100-185 (750)
448 PRK11088 rrmA 23S rRNA methylt 24.3 35 0.00075 32.0 1.0 23 90-112 3-27 (272)
449 KOG2789 Putative Zn-finger pro 24.0 35 0.00076 33.7 0.9 31 90-120 75-106 (482)
450 cd00584 Prefoldin_alpha Prefol 23.9 1.1E+02 0.0024 25.0 3.8 84 273-357 6-102 (129)
451 COG0457 NrfG FOG: TPR repeat [ 23.7 4.1E+02 0.0088 21.7 9.2 64 278-355 204-267 (291)
452 KOG0739 AAA+-type ATPase [Post 23.6 3.7E+02 0.0081 26.1 7.5 21 337-357 23-43 (439)
453 KOG3799 Rab3 effector RIM1 and 23.1 32 0.00069 28.7 0.4 41 88-132 64-119 (169)
454 smart00064 FYVE Protein presen 22.7 51 0.0011 23.7 1.4 30 90-119 11-43 (68)
455 PF07975 C1_4: TFIIH C1-like d 22.5 1E+02 0.0022 21.3 2.6 24 104-127 23-50 (51)
456 PF06160 EzrA: Septation ring 22.4 7.3E+02 0.016 26.1 10.4 139 248-386 56-215 (560)
457 KOG0551 Hsp90 co-chaperone CNS 22.4 2.8E+02 0.006 27.3 6.5 33 273-305 78-110 (390)
458 PF05053 Menin: Menin; InterP 22.2 9.4E+02 0.02 25.4 12.9 118 226-357 229-351 (618)
459 COG0497 RecN ATPase involved i 22.2 9.4E+02 0.02 25.4 15.5 87 271-357 243-337 (557)
460 PF11207 DUF2989: Protein of u 22.1 4.8E+02 0.01 23.6 7.6 54 324-380 141-194 (203)
461 KOG0994 Extracellular matrix g 21.1 5.9E+02 0.013 29.4 9.2 124 249-372 1423-1552(1758)
462 KOG4648 Uncharacterized conser 21.0 1.7E+02 0.0038 28.8 4.9 50 324-379 97-146 (536)
463 KOG4814 Uncharacterized conser 20.9 5.9E+02 0.013 27.4 8.9 57 290-354 368-424 (872)
464 KOG3053 Uncharacterized conser 20.9 1.2E+02 0.0025 28.4 3.5 45 88-132 19-83 (293)
465 KOG0837 Transcriptional activa 20.6 2E+02 0.0043 27.0 4.9 79 243-331 176-254 (279)
466 KOG2114 Vacuolar assembly/sort 20.5 2.2E+02 0.0047 31.3 5.9 61 322-383 366-429 (933)
467 PF13281 DUF4071: Domain of un 20.4 7.7E+02 0.017 24.5 9.4 93 241-354 151-256 (374)
468 KOG0495 HAT repeat protein [RN 20.3 8.9E+02 0.019 26.3 10.1 52 284-349 659-710 (913)
469 KOG0687 26S proteasome regulat 20.3 8.2E+02 0.018 24.0 9.1 19 338-356 195-213 (393)
470 PF14205 Cys_rich_KTR: Cystein 20.3 23 0.00049 24.7 -0.9 6 123-128 31-36 (55)
471 COG4976 Predicted methyltransf 20.3 1.7E+02 0.0036 27.3 4.4 51 289-353 8-58 (287)
472 PF06456 Arfaptin: Arfaptin-li 20.2 5.9E+02 0.013 23.4 8.1 36 330-365 129-166 (229)
473 PRK10941 hypothetical protein; 20.1 2.9E+02 0.0064 26.0 6.3 50 323-379 180-230 (269)
474 PRK10869 recombination and rep 20.0 1E+03 0.022 25.0 13.9 138 245-383 129-283 (553)
475 KOG0495 HAT repeat protein [RN 20.0 5.2E+02 0.011 27.9 8.3 48 333-380 653-701 (913)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=2.5e-09 Score=108.35 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=143.5
Q ss_pred HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
-+.+|+++.|...+..+.+.+....- ..++.....+.+|+..++.++.+.+|+.+|+++......+.+.. .
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~---h 279 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSG------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED---H 279 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccC------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC---C
Confidence 34678888888877655554322211 23555566677899999899999999999999988887766644 3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+...+++|+.++...|++++|..+++++++|++....... .+++..|.+++.++...+.+++|+.+|+++++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH------PEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 457889999999999999999999999999999998554433 38899999999999999999999999999999
Q ss_pred HHHHh--hcCCCchHHHHHHHHHHHHHHHHh
Q 016258 353 RLESL--TLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 353 i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
|+... ..++-.+.+..+++.+|.++|+..
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 99987 777788999999999999999764
No 2
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.11 E-value=6.6e-11 Score=113.22 Aligned_cols=204 Identities=20% Similarity=0.232 Sum_probs=129.1
Q ss_pred CCCeeccccccccccCceeccCCCcchHHhHHhcCC--------------------------------------------
Q 016258 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD-------------------------------------------- 122 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~-------------------------------------------- 122 (392)
.++|+|+||..+++ +|.+++|+|+.|+.|-.....
T Consensus 2 eeelkc~vc~~f~~-epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~~ 80 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR-EPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGG 80 (699)
T ss_pred cccccCceehhhcc-CceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccCC
Confidence 36899999999988 999999999999999754300
Q ss_pred --------------------------------------------CCCCCCCccc-------chhhhHHHHHHHHHHhhch
Q 016258 123 --------------------------------------------CPLCGADIEK-------IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 123 --------------------------------------------CP~C~~~~~~-------~~~n~~l~~~v~~~~~~~~ 151 (392)
||.|..++-. ++.|..++++|++|.+...
T Consensus 81 ~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~~ 160 (699)
T KOG4367|consen 81 FASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKA 160 (699)
T ss_pred eeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhhH
Confidence 9999886542 8999999999999976443
Q ss_pred h-cccCCCC-CCcchhhccCCCceeecCCCcccchhhhhHHHHHHHhhcHHHHHHHh-hhcHHHHHHHHHhcCCcHHHHH
Q 016258 152 R-IKRSHTN-SDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRL-SLCTEDIRDQIERMGNTSELCS 228 (392)
Q Consensus 152 ~-~~~~~~~-~~~~~~~~~~~~~~~~Cd~C~~~~~cl~c~a~~a~~~g~~~~A~~~~-~~c~~h~~~~l~~~~~~~~~C~ 228 (392)
- .+++.-. .+++.-...+.++++||+-|.-+ ||-. +|-+ |+.++ ...+..... ...+.....|.
T Consensus 161 aa~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~-----~hp~----rgpl--akh~l~~~~~grvs~--~~s~r~~~~ct 227 (699)
T KOG4367|consen 161 AALKCQLCEKAPKEATVMCEQCDVFYCDPCRLR-----CHPP----RGPL--AKHRLVPPAQGRVSR--RLSPRKVSTCT 227 (699)
T ss_pred HhhhhhhhcCChhhhhhhHhhCceEEechHHhc-----cCCC----CCch--hhcccCCcccCceee--ccchhhhhhcc
Confidence 2 1222111 01111123446777888877422 2210 0000 01111 000000000 00011123788
Q ss_pred HH-HHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 016258 229 QL-GAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARS 297 (392)
Q Consensus 229 ~h-~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~ 297 (392)
+| ++.+.+||. -|...|.| |++..+-..+.-++.+|......+....+++...|+.|......+++.-.
T Consensus 228 ~h~~e~~smyc~~ck~pvc~~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~ 307 (699)
T KOG4367|consen 228 DHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSV 307 (699)
T ss_pred CCCCCCceEEEEecCChHHHHHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 88 778888883 45566788 99888888888888888777767777777778888888776666776666
Q ss_pred HHHHHHH
Q 016258 298 YYVRSLN 304 (392)
Q Consensus 298 ~ye~sL~ 304 (392)
.|+..|-
T Consensus 308 ef~a~l~ 314 (699)
T KOG4367|consen 308 EFEACLV 314 (699)
T ss_pred hHHHHHH
Confidence 7776654
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.03 E-value=8.3e-11 Score=78.38 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=28.1
Q ss_pred ccccccccccCceeccCCCcchHHhHHhcC--------CCCCC
Q 016258 92 CMICQALLFECSKCTPCSHVYCKACISRFK--------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------~CP~C 126 (392)
|+||+++|. +|++++|||+||..||.++| .||.|
T Consensus 1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 99999999999999999984 38876
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=4.1e-08 Score=99.68 Aligned_cols=172 Identities=14% Similarity=0.170 Sum_probs=137.8
Q ss_pred HHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHH
Q 016258 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~ 273 (392)
+.+|++++|...+...-+...+.+.. ..++.+..|..+..+|..++++..++.++.....+.....+ +...
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g---~~~~ 364 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGA------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG---EDNV 364 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhcc------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---ccch
Confidence 36788888888776555444442211 34555667777888877889999999999988655553333 2233
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+....++||.++..+|++++|..+|++++.+.++..++... .++..|++||..+...+.+..|...|.++..|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~------~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY------GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh------hhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 677899999999999999999999999999999887766544 67889999999999999999999999999999
Q ss_pred HHHh-hcCCCchHHHHHHHHHHHHHHHH
Q 016258 354 LESL-TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 354 ~e~l-~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+..+ ..+|+......||+.+|..+|+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 9555 88899999999999999999975
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=3.9e-09 Score=103.41 Aligned_cols=62 Identities=31% Similarity=0.740 Sum_probs=55.2
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~ 150 (392)
..+.|+||++++. .|++++|||.||..||..|+ .||.|+..+.. +..|..|.++|+.|+...
T Consensus 25 ~~l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 25 TSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred cccCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 5699999999988 99999999999999999874 49999998876 889999999999987543
No 6
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.81 E-value=4.5e-09 Score=76.65 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=49.1
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHH
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~ 145 (392)
++.|+||.+++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..+++.++.
T Consensus 1 ~~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 478999999988 89999999999999999984 59999998865 8888888887763
No 7
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.77 E-value=5.4e-08 Score=73.83 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+...+++||.++..+|++++|+.+|++++++ .+.... ...+++.++.++|.++..+|++++|+++|+++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGD------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTT------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356778999999999999999999999999999 444432 2247899999999999999999999999999999
Q ss_pred HHHH
Q 016258 353 RLES 356 (392)
Q Consensus 353 i~e~ 356 (392)
|.+.
T Consensus 75 i~~k 78 (78)
T PF13424_consen 75 IFEK 78 (78)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.7e-09 Score=95.95 Aligned_cols=47 Identities=28% Similarity=0.773 Sum_probs=41.0
Q ss_pred CcCCCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 85 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 85 ~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.....+|.+|++.-. +|..+||||.||++||..|- .||+||..+.+
T Consensus 235 i~~a~~kC~LCLe~~~-~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS-NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCC-CCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 3445699999999977 99999999999999999993 59999998765
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.71 E-value=6.8e-09 Score=96.81 Aligned_cols=60 Identities=30% Similarity=0.738 Sum_probs=54.1
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~ 148 (392)
.-|.|-||.++|. -|+++||+|+||..||..+. .||.|..+++. +..|+.|.+||..|..
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHHhc-CceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4589999999998 99999999999999999984 59999999887 8899999999988763
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.70 E-value=9.1e-09 Score=90.39 Aligned_cols=44 Identities=32% Similarity=0.915 Sum_probs=39.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC--------------------CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--------------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------------------~CP~C~~~~~~ 132 (392)
+++.|+||++.+. +|++++|||.||+.||..|. .||.|+..+..
T Consensus 17 ~~~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4699999999988 99999999999999999872 49999998865
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.7e-08 Score=90.33 Aligned_cols=44 Identities=32% Similarity=0.850 Sum_probs=39.6
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
..|.|.||++... +|+++.|||.|||.||-+|. .||+|+..+..
T Consensus 46 ~~FdCNICLd~ak-dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAK-DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccC-CCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 5699999999988 99999999999999999993 49999987665
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.63 E-value=2.9e-08 Score=74.73 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=50.3
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
+.|.|+|+..++. +|+++++||+|++.+|..|. .||.|+..+.. +.+|..|++.|+.|...
T Consensus 3 ~~f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGELMR-DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 5699999999999 99999999999999999993 49999998887 99999999999999864
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.1e-08 Score=82.29 Aligned_cols=47 Identities=36% Similarity=0.804 Sum_probs=38.4
Q ss_pred cCCCeeccccccccccC-ceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 86 KIGPLSCMICQALLFEC-SKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+...+.||||+.-+... |+.+.|||.||+.||... ..||+|++.++.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 33569999999987743 577999999999999887 469999986553
No 14
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.55 E-value=3.4e-08 Score=70.43 Aligned_cols=54 Identities=28% Similarity=0.713 Sum_probs=29.7
Q ss_pred CeeccccccccccCce-eccCCCcchHHhHHhc--CCCCCCCCCccc--chhhhHHHHHH
Q 016258 89 PLSCMICQALLFECSK-CTPCSHVYCKACISRF--KDCPLCGADIEK--IEADTTLQDVV 143 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~--~~CP~C~~~~~~--~~~n~~l~~~v 143 (392)
-+.|++|.+++. .|+ +..|.|.||+.||.+. ..||+|+.+... +..|+.|.+++
T Consensus 7 lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence 478999999999 776 5789999999999988 469999988744 88898887765
No 15
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.53 E-value=3.8e-08 Score=64.54 Aligned_cols=34 Identities=44% Similarity=1.163 Sum_probs=28.5
Q ss_pred ccccccccccCc-eeccCCCcchHHhHHhc----CCCCCC
Q 016258 92 CMICQALLFECS-KCTPCSHVYCKACISRF----KDCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~----~~CP~C 126 (392)
|+||++.+. +| +.++|||+||+.||.+| ..||.|
T Consensus 1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc-CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999 67 78999999999999988 358877
No 16
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-07 Score=90.42 Aligned_cols=61 Identities=28% Similarity=0.704 Sum_probs=53.1
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCcccchhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~~v~~~~~~ 149 (392)
+++.|+||+++|. .|++++|+|+||..|+..++ .||.|+.....+.+|..+.++++.+...
T Consensus 12 ~~~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 12 EELTCPICLEYFR-EPVLLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQL 76 (386)
T ss_pred ccccChhhHHHhh-cCccccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhc
Confidence 6799999999999 88999999999999999876 5999996333477999999999998864
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.48 E-value=5.9e-07 Score=90.63 Aligned_cols=102 Identities=20% Similarity=0.409 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 225 ~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
.+|+.|...+.+++.+.+.+|....|+.+|+.+.+... .++...++|+.++..+|.+++|+..|.++|.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-----------~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-----------EFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-----------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 48999999999999999999999999999988865533 3455778888888888888888888888887
Q ss_pred HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
|.- ..|++++|+|.+|..+|+...|+..|..|+
T Consensus 417 I~P--------------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 417 IKP--------------TFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred cCc--------------hHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 632 123444444444444444444444444444
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.41 E-value=9.7e-08 Score=66.28 Aligned_cols=43 Identities=35% Similarity=0.830 Sum_probs=36.9
Q ss_pred CeeccccccccccCceeccCCCc-chHHhHHhc----CCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHV-YCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+..|.||++... +++.++|||. ||..|+.+| ..||.||+++..
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 468999999988 8999999999 999999999 679999998753
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.37 E-value=1.9e-07 Score=85.59 Aligned_cols=58 Identities=26% Similarity=0.630 Sum_probs=50.1
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHH
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~ 147 (392)
.+.|-||..+|. -|..++|||+||..||.++. .||+|+..... ++.+..+..+++.|.
T Consensus 25 ~lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 25 MLRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred HHHhhhhhheee-cceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 489999999999 99999999999999999984 49999998765 677777777777665
No 20
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.37 E-value=1.4e-07 Score=86.52 Aligned_cols=51 Identities=25% Similarity=0.706 Sum_probs=40.9
Q ss_pred CCeeccccccccccCc-------eeccCCCcchHHhHHhcC----CCCCCCCCcccchhhhH
Q 016258 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTT 138 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~ 138 (392)
.+..|+||++.+.+++ ++++|+|.||..||.+|. .||+||..+..+.++++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 4689999999877443 567899999999999993 59999998877555443
No 21
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.32 E-value=1.8e-07 Score=63.07 Aligned_cols=37 Identities=35% Similarity=0.912 Sum_probs=31.6
Q ss_pred eccccccccc--cCceeccCCCcchHHhHHhc----CCCCCCC
Q 016258 91 SCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~ 127 (392)
.|+||++.+. +.++.++|+|.||..||..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999984 36889999999999999999 4699996
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.29 E-value=3.4e-07 Score=60.61 Aligned_cols=34 Identities=35% Similarity=1.061 Sum_probs=30.1
Q ss_pred ccccccccccCce-eccCCCcchHHhHHhcC------CCCCC
Q 016258 92 CMICQALLFECSK-CTPCSHVYCKACISRFK------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~~------~CP~C 126 (392)
|+||++.+. .+. +++|||.||..||..|+ .||.|
T Consensus 1 C~iC~~~~~-~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc-CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988 777 99999999999999883 48887
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.28 E-value=5.9e-07 Score=60.51 Aligned_cols=38 Identities=32% Similarity=0.981 Sum_probs=33.1
Q ss_pred ecccccccc--ccCceeccCCCcchHHhHHhcC----CCCCCCC
Q 016258 91 SCMICQALL--FECSKCTPCSHVYCKACISRFK----DCPLCGA 128 (392)
Q Consensus 91 ~C~iC~~~~--~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~ 128 (392)
.|+||...+ ...+++++|||+||..|+..+. .||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999998 3369999999999999999987 6999974
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=98.27 E-value=3.2e-07 Score=81.60 Aligned_cols=52 Identities=23% Similarity=0.738 Sum_probs=41.2
Q ss_pred CCeeccccccccccC--------ceeccCCCcchHHhHHhcC----------CCCCCCCCcccchhhhHH
Q 016258 88 GPLSCMICQALLFEC--------SKCTPCSHVYCKACISRFK----------DCPLCGADIEKIEADTTL 139 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~--------p~~~~C~h~fC~~Ci~~~~----------~CP~C~~~~~~~~~n~~l 139 (392)
.+..|+||++...+. ++..+|+|+||..||..|. .||.||..+..+.+.++.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 468999999986522 4677999999999999994 299999988876655443
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.6e-07 Score=81.09 Aligned_cols=45 Identities=31% Similarity=0.941 Sum_probs=39.0
Q ss_pred CCCeeccccccccccCceeccCCCcchHHhHHh-c----CC-CCCCCCCccc
Q 016258 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISR-F----KD-CPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~-~----~~-CP~C~~~~~~ 132 (392)
..++.|.||++... .|..++|||.||+.||.. | .. ||+||+....
T Consensus 213 ~~d~kC~lC~e~~~-~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPE-VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccC-CcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 35799999999988 999999999999999998 5 23 9999986544
No 26
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=4e-05 Score=57.88 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=65.4
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
|.....+..++.+++.+|++.+|+.+++++..+.+.++. -...+...+.+||.++...|++++|+.+|++++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 455677888999998999999999999999988777765 2345678999999999999999999999999999876
Q ss_pred H
Q 016258 308 D 308 (392)
Q Consensus 308 ~ 308 (392)
.
T Consensus 78 k 78 (78)
T PF13424_consen 78 K 78 (78)
T ss_dssp H
T ss_pred C
Confidence 3
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.07 E-value=1.5e-06 Score=57.87 Aligned_cols=27 Identities=37% Similarity=1.111 Sum_probs=18.5
Q ss_pred ccccccccccC----ceeccCCCcchHHhHHhc
Q 016258 92 CMICQALLFEC----SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 92 C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~ 120 (392)
|+||.+ +. + |++++|||+||+.||.++
T Consensus 1 CpIc~e-~~-~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FS-TEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT------TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-cc-CCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 55 5 999999999999999876
No 28
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.06 E-value=1.4e-06 Score=81.81 Aligned_cols=63 Identities=38% Similarity=0.887 Sum_probs=53.2
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc------chhhhHHHHHHHHHHhhc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~------~~~n~~l~~~v~~~~~~~ 150 (392)
....|.+|..+|.|.-.++.|.|+||++||..+ .-||.|...+.. +..+..|+.||-++..+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl 86 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGL 86 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchH
Confidence 458999999999977777889999999999988 459999987665 788999999998876443
No 29
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.05 E-value=6.2e-05 Score=73.11 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=105.3
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
|..+..+|..+|.+|++..++.+.+..+++.+++++.-. ...+..+||+.+.-+|+++.|+++|...+.+..++.
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg 269 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG 269 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence 445667777888899999999998888888888877433 345788999999889999999999999998887776
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+..+ |-+---||..|..+.++++|++|+++-+.|-++|.........-|.++..+..||+.
T Consensus 270 ~r~vE--------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 270 NRTVE--------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred chhHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 55443 334445777888888888888888888888888865556666667777777777653
No 30
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.03 E-value=3.7e-06 Score=56.09 Aligned_cols=39 Identities=38% Similarity=1.025 Sum_probs=31.1
Q ss_pred eccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCC
Q 016258 91 SCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGAD 129 (392)
Q Consensus 91 ~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~ 129 (392)
.|+||.+.+.+...+.+|+|.||..|+..| ..||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 489999998634445559999999999877 359999875
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.7e-06 Score=85.64 Aligned_cols=43 Identities=30% Similarity=0.814 Sum_probs=38.3
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC---------CCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~ 132 (392)
+..||||+.... -|+.+.|||.||..||.++| .||+|+..+..
T Consensus 186 ~~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 688999999977 88888899999999999875 39999988776
No 32
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.95 E-value=4.3e-06 Score=53.79 Aligned_cols=34 Identities=38% Similarity=1.115 Sum_probs=29.8
Q ss_pred ccccccccccCceeccCCCcchHHhHHhcC-----CCCCC
Q 016258 92 CMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C 126 (392)
|+||++... .++.++|+|.||..|+..|. .||.|
T Consensus 1 C~iC~~~~~-~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC-CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999966 99999999999999999873 38876
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.93 E-value=5.4e-05 Score=76.86 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
..+.++||+++..+|.+++|...|++++++.- +.|...+|||.+|.++|++++|+..|++++.|
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p--------------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFP--------------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-- 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--------------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence 45778888888888888888888888876532 46778899999999999999999999999876
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
.|.-++.+.|++.+|--+|++-
T Consensus 418 ----~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 418 ----KPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred ----CchHHHHHHhcchHHHHhhhHH
Confidence 4555666677777776666553
No 34
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.4e-06 Score=82.26 Aligned_cols=60 Identities=23% Similarity=0.629 Sum_probs=47.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc---chhhhHHHHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK---IEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~---~~~n~~l~~~v~~~~ 147 (392)
.++.|+||+++|.....+..|+|.||..||... ..||.||+.+.. +.++..+-.|+..+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 479999999999977777789999999999765 469999998776 666555555555544
No 35
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.88 E-value=8.3e-05 Score=72.23 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=90.9
Q ss_pred hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHH
Q 016258 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl 327 (392)
..|+.+|++-+++.+.+++.. .......+||+.++-+|+++.|+..++.-|.|.++..++..+ ....
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~-----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--------RRA~ 238 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRL-----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--------RRAH 238 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--------HHhh
Confidence 345666666677777776632 234578899999999999999999999999999887655433 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
++||..+.-+|+++.|+++|+.++.+-.++.+....+-.-+.++..|..+.
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~ 289 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK 289 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH
Confidence 899999999999999999999999999998554455555556666655443
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=1.7e-05 Score=75.05 Aligned_cols=58 Identities=24% Similarity=0.575 Sum_probs=40.4
Q ss_pred CCeecccccc--ccccCc--eeccCCCcchHHhHHhcC-----CCCCCCCCccc------chhhhHHHHHHHH
Q 016258 88 GPLSCMICQA--LLFECS--KCTPCSHVYCKACISRFK-----DCPLCGADIEK------IEADTTLQDVVDR 145 (392)
Q Consensus 88 ~~~~C~iC~~--~~~~~p--~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~------~~~n~~l~~~v~~ 145 (392)
++..||+|.. ++...- .+.+|||.||.+|+..+| .||.|+..+.. +..+..+...|+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~i 74 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHH
Confidence 4578999999 444121 233799999999999964 49999998776 4445555555443
No 37
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.00066 Score=64.70 Aligned_cols=107 Identities=20% Similarity=0.335 Sum_probs=81.5
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhc
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
+..-..++ ..++...|+.+++.+.+.....+. ....+..+.+|+.++... |++++|+.+|++++++.+...
T Consensus 78 ~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~-----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-- 149 (282)
T PF14938_consen 78 YEEAANCY-KKGDPDEAIECYEKAIEIYREAGR-----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-- 149 (282)
T ss_dssp HHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--
Confidence 33333444 666778999999999888887765 455678899999999999 999999999999999887632
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
........+.+++.++..+|+|++|++.|++.....
T Consensus 150 ------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 150 ------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred ------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 112456678899999999999999999998876643
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00092 Score=58.38 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=86.6
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+...+..+...|++..|+..++.+.... +.. .....++.+||.++...|++++|+..|++++.+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~~----~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~----- 102 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE----IDP----YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN----- 102 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----ccc----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 344556777767899999998888775442 111 1234578999999999999999999999999762
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
+........++..+.+++..+..+|+++.|+..|++++.+++.. ..+|+
T Consensus 103 --~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 103 --PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred --cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 22233344566666667777779999999999999999999998 55554
No 39
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0015 Score=62.33 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=94.1
Q ss_pred hhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016258 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~ 318 (392)
......+++..|...|..+.+...++.. .......+.+.+.++... ++++|+..|++++++.....
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-------- 108 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGD-----KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-------- 108 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--------
Confidence 4455667789999999998888777655 334456677788887666 99999999999999887532
Q ss_pred chhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 319 QVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 319 ~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.....|..+.++|.+++.. |+++.|+++|++|+++++.-...-.......+++.++-.+++
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 2234678899999999999 999999999999999999874333445567778887777664
No 40
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=4.6e-05 Score=75.11 Aligned_cols=64 Identities=28% Similarity=0.834 Sum_probs=52.1
Q ss_pred CCCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc-------chhhhHHHHHHHHHHhhch
Q 016258 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK-------IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~-------~~~n~~l~~~v~~~~~~~~ 151 (392)
-.+|.|.||...|. +|+++||||+||..||.+. ..||.|+..+.. ..+|+.+..++..|....-
T Consensus 82 ~sef~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~ 156 (398)
T KOG4159|consen 82 RSEFECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSS 156 (398)
T ss_pred cchhhhhhhHhhcC-CCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45799999999999 9999999999999998775 359999998875 3346777788888776543
No 41
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0024 Score=56.05 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=83.5
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..+|..+...|++.+|+.+++++...... .. .....+.++|.++...|++++|+..|++++.+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 102 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEED----PN----DRSYILYNMGIIYASNGEHDKALEYYHQALELN------ 102 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----cc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 4556677777889999999999887544221 11 123478899999999999999999999998752
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 363 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~ 363 (392)
+........++..+..++.....+|+++.|+..|++++.++++. ..+|++
T Consensus 103 -p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 -PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 22222233444455555555566678899999999999999998 666665
No 42
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.56 E-value=0.00017 Score=47.16 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCC
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPE 362 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~ 362 (392)
++.++++||.++..+|++++|+.++++++.+.+++ .+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 36789999999999999999999999999999999 66664
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.7e-05 Score=79.88 Aligned_cols=44 Identities=30% Similarity=0.775 Sum_probs=38.8
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
+-++|++|..-.. +.+++.|+|.||..|+... ..||.|+..|..
T Consensus 642 ~~LkCs~Cn~R~K-d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh-hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3699999998877 9999999999999999876 469999988765
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00061 Score=68.71 Aligned_cols=109 Identities=22% Similarity=0.279 Sum_probs=85.8
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
||.-.-++.-+|.+-+..+++.+|..+++..++....+..+...|.. .+++||.++..++.+.+|+.+|+++|.+.
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p----~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP----TLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH----HHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 33333355566777778888899999999888666666665555544 78999999999999999999999999653
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.. -+....-+|-+|..+|+++.|+++|.+||.+
T Consensus 486 ~k--------------~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 486 PK--------------DASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred CC--------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 32 1456777899999999999999999999864
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.45 E-value=0.0018 Score=68.54 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=39.7
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
.++.+++.+|++..|+.+++.+... .+.. ......+|.++...|++++|+..|++++++.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~----~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN----FPEA-------PDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3444555556666666666554321 2222 2356778999999999999999999988763
No 46
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.41 E-value=0.0029 Score=67.03 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=64.1
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
+..++.+....|++..|+.+++++.+. .+... ..+..+|.++...|++++|+..|++++++.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------- 429 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKL----NSEDP-------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------- 429 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------
Confidence 344555555666777777776665332 22222 245667777777788888888887777542
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+. ....+.++|.++..+|++++|+..|++++.+ .|.++.....++.++..+|
T Consensus 430 P~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 430 PD-------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred cc-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcc
Confidence 11 1223445556666666666666655555532 3444455555555555444
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00059 Score=68.79 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.++++|-+.+..+.+.+|..+|+.+|...+.+..+.+ -..-.+++||.+++.++.+++|+..|+++|.+..+-
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 5788999999999999999999999976666554333 245568999999999999999999999999876654
Q ss_pred -hcCCCch---HHHHHHHHHHHHHHHHhhcCCCC
Q 016258 358 -TLKPEEA---GLEQRRLSVLEFLNNQLSEKPPE 387 (392)
Q Consensus 358 -~~~p~~a---~~l~~~~~~~~~l~~~~~~~~~~ 387 (392)
..+..++ .++.++.....++++.|+-++..
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 3333322 24566666667777777666544
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.38 E-value=0.0038 Score=55.73 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+..++.++...|++++|+.+|++++.+ .|.....+..++.++...|+
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT------YNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Confidence 3445666666677777777666666554 23333444444444444443
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.36 E-value=0.00058 Score=66.81 Aligned_cols=41 Identities=20% Similarity=0.587 Sum_probs=34.3
Q ss_pred CCeeccccccccccC---ceeccCCCcchHHhHHhcC--CCCCCCC
Q 016258 88 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFK--DCPLCGA 128 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~--~CP~C~~ 128 (392)
+--+||||++.+-.. .+++.|.|+|=..|+..|| .||+||.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhh
Confidence 346899999987644 3788999999999999997 4999985
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.26 E-value=0.0054 Score=52.29 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=88.3
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
.++......|++.+|+.++.... .+.+... ..+..+|.+....|++++|+..|++++++ .+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al----~~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-------~p~ 90 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLV----MAQPWSW-------RAHIALAGTWMMLKEYTTAINFYGHALML-------DAS 90 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HcCCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCC
Confidence 35666668899999988887653 3344333 35788999999999999999999999964 232
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
-+..+.++|.++..+|++++|+..|++++. ..|+++.+..+++.+...+...+
T Consensus 91 -------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~------~~p~~~~~~~~~~~~~~~l~~~~ 143 (144)
T PRK15359 91 -------HPEPVYQTGVCLKMMGEPGLAREAFQTAIK------MSYADASWSEIRQNAQIMVDTLI 143 (144)
T ss_pred -------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHHHHh
Confidence 255678899999999999999999988875 45888888888888877766544
No 51
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0023 Score=46.77 Aligned_cols=64 Identities=17% Similarity=0.392 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKR 353 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~i 353 (392)
+..+..+|.++...|++++|+..|.+++++ .+ +-+..+.++|.++..+| ++++|+..|++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-------~p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-------DP-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-------ST-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 356889999999999999999999999976 22 23557889999999999 799999999999875
No 52
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.23 E-value=0.00016 Score=63.17 Aligned_cols=53 Identities=28% Similarity=0.612 Sum_probs=40.9
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc-chhhhHHHHH
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTLQDV 142 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l~~~ 142 (392)
+|.|.||...+. .|+++.|||+||..|...-. .|-.|++.... +...-.++.|
T Consensus 196 PF~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~km 253 (259)
T COG5152 196 PFLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKM 253 (259)
T ss_pred ceeehhchhhcc-chhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHH
Confidence 689999999988 99999999999999976542 49999886655 4443334333
No 53
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.20 E-value=0.00016 Score=54.22 Aligned_cols=37 Identities=38% Similarity=0.928 Sum_probs=28.9
Q ss_pred ecccccccccc------------CceeccCCCcchHHhHHhcC----CCCCCC
Q 016258 91 SCMICQALLFE------------CSKCTPCSHVYCKACISRFK----DCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~~------------~p~~~~C~h~fC~~Ci~~~~----~CP~C~ 127 (392)
.|.||+..|.+ ..+..+|||.|...||.+|. .||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999999832 23556899999999999993 599997
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.17 E-value=0.0088 Score=52.12 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.....+..+|.++...|++++|+..|.+++.+.. .+ .+.+.++.++|.++..+|++++|+..|++++.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999998721 11 134567899999999999999999999999976
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 354 LESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 354 ~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
+|.......+++.++..++...
T Consensus 102 ------~~~~~~~~~~la~i~~~~~~~~ 123 (168)
T CHL00033 102 ------NPFLPQALNNMAVICHYRGEQA 123 (168)
T ss_pred ------CcCcHHHHHHHHHHHHHhhHHH
Confidence 4555666778888888666443
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.17 E-value=0.012 Score=52.52 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=102.7
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.+...+..|++++|...+.... ... |.+...+..++.++...|++..++.+++.+... .+..
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l-------~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~ 98 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKAL-------EHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNN 98 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-------HhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC
Confidence 3446678899999998876331 111 222345566788887889999999998877543 2222
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
. ....+++.++...|++++|+..|++++.... .+ .....+.++|.++...|+++.|...|+
T Consensus 99 ~-------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 99 G-------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YP-------QPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred H-------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cc-------cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 3567889999999999999999999986311 01 123456678999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+++.+ .|........++.++...|+
T Consensus 160 ~~~~~------~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 160 RALQI------DPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHh------CcCChHHHHHHHHHHHHcCC
Confidence 98764 34444455566666655544
No 56
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0003 Score=65.49 Aligned_cols=49 Identities=31% Similarity=0.703 Sum_probs=40.1
Q ss_pred eeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc-chhhhHH
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK-IEADTTL 139 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~-~~~n~~l 139 (392)
-.|+||+.--. -|+.++|+|.||.-||... ..|++||.++.. +..+..+
T Consensus 8 ~eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl 62 (324)
T KOG0824|consen 8 KECLICYNTGN-CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSL 62 (324)
T ss_pred CcceeeeccCC-cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhh
Confidence 56999999966 8999999999999999775 359999999987 4444333
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00036 Score=64.85 Aligned_cols=51 Identities=24% Similarity=0.708 Sum_probs=42.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc-chhhhHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTL 139 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l 139 (392)
-++.|.||...+. .|+++.|+|.||..|-.... .|++|.+.+.. +.+...|
T Consensus 240 ~Pf~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL 295 (313)
T KOG1813|consen 240 LPFKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKEL 295 (313)
T ss_pred CCccccccccccc-cchhhcCCceeehhhhccccccCCcceecccccccccchHHHH
Confidence 3688999999999 99999999999999987653 49999998877 5554444
No 58
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.99 E-value=0.00077 Score=62.49 Aligned_cols=59 Identities=27% Similarity=0.662 Sum_probs=47.5
Q ss_pred CeeccccccccccCceec-cCCCcchHHhHHhc-----CCCCCCCCC---cccchhhhHHHHHHHHHHh
Q 016258 89 PLSCMICQALLFECSKCT-PCSHVYCKACISRF-----KDCPLCGAD---IEKIEADTTLQDVVDRFIE 148 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~-----~~CP~C~~~---~~~~~~n~~l~~~v~~~~~ 148 (392)
.|.|++|..+++ .|+.+ .|+|.||..||... +.||.|... +..+.++..-+..|+.+.+
T Consensus 274 ~LkCplc~~Llr-np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 274 SLKCPLCHCLLR-NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred cccCcchhhhhh-CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 499999999999 66655 68999999999855 579999763 3338888888888888765
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.96 E-value=0.00013 Score=75.43 Aligned_cols=45 Identities=16% Similarity=0.462 Sum_probs=36.4
Q ss_pred CCeeccccccccccC--ceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
..-+|++|+.-+.+. ..-.+|+|.||..||..|. .||+|+..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 357899999887743 3445799999999999993 59999988765
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.87 E-value=0.014 Score=51.08 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
-......+|.++...|++++|+.+|++++++... .. +.+..+.++|.++..+|++++|+..|++++.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 101 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PN------DRSYILYNMGIIYASNGEHDKALEYYHQALEL- 101 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 3456788999999999999999999999986432 11 23456789999999999999999999988875
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 355 ESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 355 e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|........++.++..+++.
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCCh
Confidence 466666677777777766653
No 61
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00096 Score=61.39 Aligned_cols=45 Identities=31% Similarity=0.739 Sum_probs=35.8
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc------CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
....|++|......+-+..+|+|.||..||... +.||.|+.....
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 468999999998844444559999999999775 359999987654
No 62
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00075 Score=65.05 Aligned_cols=43 Identities=33% Similarity=0.700 Sum_probs=36.9
Q ss_pred eecccccccccc--CceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258 90 LSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
..|.||++.+.. .-+.|||.|.|=..||..|. .||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 599999998874 37889999999999999993 39999987665
No 63
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.69 E-value=0.0045 Score=39.43 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
++.+||.++..+|++++|+++|++++.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999999977654
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.68 E-value=0.029 Score=63.95 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=96.0
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...|... +...+ .....+..++.+....|++.+|+.+++++......... ...+
T Consensus 278 ~~~~~g~~~~A~~~l~~a-------L~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~ 342 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQA-------VRANP-------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKW 342 (1157)
T ss_pred HHHHCCCHHHHHHHHHHH-------HHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHH
Confidence 344567777776665422 22222 23345667888887899999999999887543221111 0122
Q ss_pred HHHHH----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258 272 IHTLS----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 272 ~~~ls----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
...+. .....++.+....|++++|+..|++++++ .+.+ +..+..+|.++..+|++++|+..|
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-------~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-------DNTD-------SYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22222 12345678888899999999999999876 2221 345678999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258 348 QEAIKRLESLTLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 348 ~eal~i~e~l~~~p~~a~~l~~~~~~~ 374 (392)
++++.+ +|++......++.+|
T Consensus 409 ~~aL~~------~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 409 QQALRM------DPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHh------CCCCHHHHHHHHHHH
Confidence 998865 355555555555544
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.60 E-value=0.037 Score=63.08 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=96.5
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHH-------HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHH
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSE-------LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLM 262 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~-------~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~ 262 (392)
+...++.|++++|...|.... ...+.+.. ....+-..+...+......|++.+|+.+++++...
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al-------~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-- 380 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKAL-------ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-- 380 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 336668888888888775332 11221110 00001112223355666788889999888776543
Q ss_pred hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH----------Hhhc-CCCCCcch-----------
Q 016258 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD----------AVKR-HSNVPSQV----------- 320 (392)
Q Consensus 263 ~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~----------~~~~-~~~~~~~~----------- 320 (392)
.+... ..+..+|.++...|++++|+..|++++++.-. +... ..+.....
T Consensus 381 --~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 381 --DNTDS-------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred --CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 23222 35678899999999999999999999874210 0000 00000000
Q ss_pred -hhH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 321 -LDV-----AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 321 -~dl-----a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+. ...+..++.++...|++++|+..|++++.+ +|++..+..+++.+|..+|+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Confidence 000 122345778888889999999888877753 56666666666666655443
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.60 E-value=0.036 Score=54.69 Aligned_cols=113 Identities=8% Similarity=0.078 Sum_probs=86.4
Q ss_pred hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
+...+..|++..|+.+|+++... .+... ..+.+++.++..+|++++|+..|++++++. +
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~----~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P--- 67 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL----DPNNA-------ELYADRAQANIKLGNFTEAVADANKAIELD-------P--- 67 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c---
Confidence 44555788889999998877543 33333 256788889999999999999999998762 2
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
+.+..+.++|.++..+|+++.|+..|++++.+ +|++..+..+++.+...|.+..
T Consensus 68 ----~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl~~~~ 121 (356)
T PLN03088 68 ----SLAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKIAEEE 121 (356)
T ss_pred ----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhhh
Confidence 22456778999999999999999998888753 5777788888888888886543
No 67
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.54 E-value=0.036 Score=61.62 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=62.2
Q ss_pred hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhH
Q 016258 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dl 323 (392)
+|++..|+..++++... .+. .....+++.++...|++++|+..|++++++ .+. -
T Consensus 589 ~Gr~~eAl~~~~~AL~l----~P~--------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd-------~ 642 (987)
T PRK09782 589 PGQPELALNDLTRSLNI----APS--------ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPN-------N 642 (987)
T ss_pred CCCHHHHHHHHHHHHHh----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------C
Confidence 36666666665554322 111 124566677777777777777777776654 232 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+..+.++|.++..+|++++|+..|+++++ .+|+++.+..+++.++..+|+
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHK------GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHCCC
Confidence 33556667677777777777766666654 356666666677766666554
No 68
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.52 E-value=0.06 Score=53.09 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
+..+..++...|++.+|+.+++..... .+... ...+......++.++...|++++|+..|++++++
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKL----GGDSL--RVEIAHFYCELAQQALARGDLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHh----cCCcc--hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence 344455555667777776666554321 11111 1123334556666777777777777777777653
No 69
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.51 E-value=0.021 Score=41.14 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=46.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+|.++...|++++|+..|++.++ ..+ +-...+..+|.++..+|++++|+..|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~-------~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK-------QDP-------DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC-------CST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH-------HCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356778888999999888888773 333 34667888999999999999999999998854
No 70
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.44 E-value=0.065 Score=57.27 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHhhhhhhhhhhcchhH----HHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 233 VLGMLGDCCRAMGDADA----AVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~----a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
.+..++......|++.+ |+.+++.+.. +.+... .....+|.++...|++++|+..|++++++
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~~-------~a~~~lg~~l~~~g~~~eA~~~l~~al~l--- 313 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDNV-------RIVTLYADALIRTGQNEKAIPLLQQSLAT--- 313 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 44456666656677653 4555544432 223222 35667788888888888888888887754
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.+. ....+.+++.++..+|++++|+..|++++. .+|+...+...++.++..+|
T Consensus 314 ----~P~-------~~~a~~~La~~l~~~G~~~eA~~~l~~al~------~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 314 ----HPD-------LPYVRAMYARALRQVGQYTAASDEFVQLAR------EKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred ----CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHCC
Confidence 222 123445677777777777777776655543 24444444444444444333
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.0075 Score=61.21 Aligned_cols=32 Identities=16% Similarity=0.036 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
+.-|||.-+.++|.|++|+.+|-.||.|.+.-
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 44679999999999999999999999999985
No 72
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.12 Score=53.41 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH----------
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF---------- 347 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~---------- 347 (392)
++--||.++..+++++.|.-.|+++++|- +.+ .+.+..+|.++..+|..++|+.+|
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-------P~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEIN-------PSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCC-------ccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 45567888888888888888888888652 221 223445566666666666666555
Q ss_pred -----------------HHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHHH
Q 016258 348 -----------------QEAIKRLESL-TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 348 -----------------~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+|+..+|+| +.-|+++....-++.+|-.+|+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 4455666777 56688888888888888888765
No 73
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0016 Score=67.82 Aligned_cols=43 Identities=28% Similarity=0.768 Sum_probs=37.8
Q ss_pred CCeeccccccccccC----ceeccCCCcchHHhHHhcC----CCCCCCCCc
Q 016258 88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK----DCPLCGADI 130 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~ 130 (392)
....|.||.+.+... |..++|+|.|+..|+..|. .||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 478999999999943 8999999999999999994 599999843
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.35 E-value=0.023 Score=48.42 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=67.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~ 359 (392)
..+|......|++++|+..|.+++.+ .+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------ 87 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMA-------QPW-------SWRAHIALAGTWMMLKEYTTAINFYGHALML------ 87 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 35688888999999999999997744 232 3567788999999999999999999999863
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 016258 360 KPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 360 ~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|+++....+++.++..+|+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCH
Confidence 688899999999998887764
No 75
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.002 Score=60.02 Aligned_cols=43 Identities=26% Similarity=0.824 Sum_probs=36.4
Q ss_pred Ceecccccccccc--CceeccCCCcchHHhHHhcC-----CCCCCCCCcc
Q 016258 89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~ 131 (392)
-..|.||+.-+.. .-+.+||.|.|-..|+..|. .||+||..++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3789999997763 37889999999999999993 5999998765
No 76
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.29 E-value=0.011 Score=37.55 Aligned_cols=31 Identities=35% Similarity=0.628 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
++.+||.++...|++++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999987665
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.27 E-value=0.13 Score=55.18 Aligned_cols=125 Identities=10% Similarity=-0.053 Sum_probs=87.5
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
.+.++|.+++|...+..+ ...+|+|......|..++...+.+.+|+..+++... ..+.+..
T Consensus 95 i~~~~g~~~ea~~~l~~~--------------~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~- 155 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGI--------------HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAR- 155 (694)
T ss_pred HHHHcCCcHHHHHHHHHH--------------HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHH-
Confidence 344556666665555322 226778878888888888777777888766655432 2344443
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+..++.....+|++++|+..|++.+. ..+ +-+..+-.+|.++..+|+.++|...|++++
T Consensus 156 ------~~~~~a~~l~~~g~~~~A~~~y~~~~~-------~~p-------~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 156 ------EILLEAKSWDEIGQSEQADACFERLSR-------QHP-------EFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred ------HHHHHHHHHHHhcchHHHHHHHHHHHh-------cCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677778888888899999988874 222 235567788999999999999999999998
Q ss_pred HHHH
Q 016258 352 KRLE 355 (392)
Q Consensus 352 ~i~e 355 (392)
+..-
T Consensus 216 ~~~~ 219 (694)
T PRK15179 216 DAIG 219 (694)
T ss_pred HhhC
Confidence 7643
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.22 E-value=0.047 Score=45.17 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=71.1
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++......|++.+|...++.... +.+... .....++.++...|++++|+..|++++.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 80 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNS-------RYWLGLAACCQMLKEYEEAIDAYALAAAL------- 80 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 345566666678888888888765533 234333 35678888998899999999999888764
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.+. ....+.++|.++...|+++.|+..|++++.+.
T Consensus 81 ~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 DPD-------DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 24456789999999999999999988777653
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.078 Score=54.23 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=80.5
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHH---------HHHH-------hCCC----CChhHHHHHHHHHHHHHHHHHhccC
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSV---------EFLM-------KLPM----DDLEIIHTLSVSLNKIGDLKYYGGD 291 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~---------~~~~-------~L~~----~~~e~~~~ls~~~~~lg~l~~~~g~ 291 (392)
..+.+..++||.+|++.+++.+|+.-. +++. .+.. ..++....--+.+-|...++...|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 466777888889999988888887541 1111 0111 0011111111234456777778899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 292 LQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 292 l~~A~~~ye~sL~i~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
|.+|++.+++++.+-++.+.....+ .+...+++..--.|+-|+..+|+.++|...|...+
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999999888776555444 33345677666789999999999999998886654
No 80
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.19 E-value=0.021 Score=42.25 Aligned_cols=93 Identities=19% Similarity=0.343 Sum_probs=65.4
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
.++......|++..++.+++..... .+... .....++.++...+++++|+..|++++.+. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~ 66 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELD-------PD 66 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Cc
Confidence 3445555678888888887665332 22221 456788889988899999999998887642 21
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
. ...+..++.++..+|+++.|...+++++.+
T Consensus 67 ~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 67 N-------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred c-------hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 1 145667888999999999999988887653
No 81
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.17 E-value=0.0032 Score=62.74 Aligned_cols=44 Identities=30% Similarity=0.773 Sum_probs=38.2
Q ss_pred CCeeccccccccccCcee-ccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
..+.|++|..++. +|+. +.|||.||..|+..|. .||.|+.....
T Consensus 20 ~~l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred ccccCcccccccc-CCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 5699999999999 7777 5999999999999984 59999877665
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.16 E-value=0.044 Score=52.55 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+...|.+....|++..|+..++.+.. +.+... .++..+|.++...|++++|+..|++++++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALA----LRPDMA-------DAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 3455566666677777777777665543 233332 36678888888888888888888888764
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.++ ....+.++|.++...|++++|+..|++++.
T Consensus 128 -~P~-------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 128 -DPT-------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred -CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222 233556677777777777777777766664
No 83
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.12 E-value=0.0029 Score=63.10 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCeeccccccccccCceeccCCCcchHHhHHhc--------
Q 016258 49 NSAKPQAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-------- 120 (392)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-------- 120 (392)
..++|++.+-.+.+++-..+ ..++..|.+|.+... +++...|-|.||+.||..+
T Consensus 513 Q~aDHP~LVl~S~~~n~~~e-----------------nk~~~~C~lc~d~ae-d~i~s~ChH~FCrlCi~eyv~~f~~~~ 574 (791)
T KOG1002|consen 513 QAADHPDLVLYSANANLPDE-----------------NKGEVECGLCHDPAE-DYIESSCHHKFCRLCIKEYVESFMENN 574 (791)
T ss_pred HhccCcceeeehhhcCCCcc-----------------ccCceeecccCChhh-hhHhhhhhHHHHHHHHHHHHHhhhccc
Confidence 45678888777644322111 115689999999988 9999999999999999776
Q ss_pred -CCCCCCCCCccc
Q 016258 121 -KDCPLCGADIEK 132 (392)
Q Consensus 121 -~~CP~C~~~~~~ 132 (392)
..||.|...+..
T Consensus 575 nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 575 NVTCPVCHIGLSI 587 (791)
T ss_pred CCCCccccccccc
Confidence 359999876654
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.12 E-value=0.15 Score=43.99 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=88.0
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+.-++..-+..|++.+|..+|+-. -.+.+. ...-+-+||-+...+|++++|+..|..++.+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L----~~~Dp~-------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------ 99 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLL----TIYDAW-------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------ 99 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH----HHhCcc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 3444555444899999999888643 233332 33467789999999999999999999988652
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
++ -....-++|.++..+|+.+.|...|+.++.... .+|....+..+....+..|.
T Consensus 100 -~d-------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~---~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 100 -ID-------APQAPWAAAECYLACDNVCYAIKALKAVVRICG---EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred -CC-------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHhh
Confidence 22 244677899999999999999999999999985 45777777777777666554
No 85
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.10 E-value=0.015 Score=37.66 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
..++++|+.++..+|++++|+.+|++++++++.+.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 45789999999999999999999999999999886554
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.12 Score=47.08 Aligned_cols=134 Identities=16% Similarity=0.131 Sum_probs=81.2
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
..+.++-=+++|++..|+.-+... |...+.+.... ...-.++...|++..|-..|+.+..+ .
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekA-------L~~DPs~~~a~-------~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~ 99 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKA-------LEHDPSYYLAH-------LVRAHYYQKLGENDLADESYRKALSL----A 99 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-------HHhCcccHHHH-------HHHHHHHHHcCChhhHHHHHHHHHhc----C
Confidence 344555667888888887766422 22222222111 11223445667776666666655332 3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 016258 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~ 345 (392)
+.+- .++||-|...-.+|++++|..+|+++++. |. ....+.++.|+|-+..+.|+...|.+
T Consensus 100 p~~G-------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~----Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 100 PNNG-------DVLNNYGAFLCAQGRPEEAMQQFERALAD--------PA----YGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred CCcc-------chhhhhhHHHHhCCChHHHHHHHHHHHhC--------CC----CCCcchhhhhhHHHHhhcCCchhHHH
Confidence 3332 35788888888888888888888877742 11 22456677788888888888888888
Q ss_pred HHHHHHHHHHH
Q 016258 346 GFQEAIKRLES 356 (392)
Q Consensus 346 ~~~eal~i~e~ 356 (392)
+|++++.+..+
T Consensus 161 ~l~raL~~dp~ 171 (250)
T COG3063 161 YLKRALELDPQ 171 (250)
T ss_pred HHHHHHHhCcC
Confidence 88877766543
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.00 E-value=0.067 Score=59.53 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=76.7
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++.++...|++.+|+..++.+.. +.+... ....++|.++...|++++|+..|++++++
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------ 672 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNS-------NYQAALGYALWDSGDIAQSREMLERAHKG------ 672 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 3456677788788999999988877643 344444 35788898999999999999999998864
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.+. .+..+.++|.++..+|++++|+..|++++.+-
T Consensus 673 -~P~-------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 -LPD-------DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred -CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 333 24567899999999999999999999988654
No 88
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.96 E-value=0.18 Score=49.64 Aligned_cols=61 Identities=21% Similarity=0.062 Sum_probs=40.2
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
.+..++..+...|++..|..+++..... .+. -..+...++.++...|++++|+..|.+.++
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDE----GDF-------AEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcC----Ccc-------hHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3455566665677777777777665321 111 123567778888888888888888887765
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.93 E-value=0.21 Score=45.58 Aligned_cols=166 Identities=14% Similarity=0.036 Sum_probs=100.3
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+...+..|++++|...+... +...+.+. .....+..++......|++..|+..++..... .
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~-------~~~~p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~ 100 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEAL-------ESRYPFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----H 100 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C
Confidence 344444667889999888876521 22222221 12234556777877889999999998877543 2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHHHHhhcCCCCCcch---hh-------HHHHH
Q 016258 266 MDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQV---LD-------VAVSL 327 (392)
Q Consensus 266 ~~~~e~~~~ls~~~~~lg~l~~~~--------g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~---~d-------la~sl 327 (392)
+....+ ...+..+|.++... |++++|+..|++.+.. .+.+.... .. +....
T Consensus 101 p~~~~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 101 PNHPDA----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred cCCCch----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 323322 22455666666554 5667777777766643 33322111 11 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
-.+|.++...|++.+|+..|++++.... +.|..+....+++.++..+|+.
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCH
Confidence 2578889999999999998888775532 3466666777888888777763
No 90
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.93 E-value=0.005 Score=43.72 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=26.0
Q ss_pred CeeccccccccccCcee-ccCCCcchHHhHHhcC------CCCC
Q 016258 89 PLSCMICQALLFECSKC-TPCSHVYCKACISRFK------DCPL 125 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~------~CP~ 125 (392)
.+.|||.+..|. +|+. ..|+|+|.+..|.++. .||.
T Consensus 11 ~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 589999999999 6655 6899999999999985 3998
No 91
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.21 Score=49.89 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 225 ~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
+.||.--+.+.-+|+.+-.++.|-=|.-+|+++. ++.+.++. .+.-||+.++.++++++|+..|.+++.
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~----~~kPnDsR-------lw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL----ELKPNDSR-------LWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH----hcCCCchH-------HHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3566666666667788856666766777777663 45555553 467889999999999999999999985
Q ss_pred HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.-.. + ...|..||+++++++++++|..+|++-++.....
T Consensus 461 ~~dt------e--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 461 LGDT------E--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred cccc------c--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 4221 1 3568899999999999999999999999977444
No 92
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.29 Score=46.28 Aligned_cols=122 Identities=14% Similarity=0.173 Sum_probs=86.6
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
+....+.|+.=|.--...+++.+|+..|.++. +|.+.+.-+...-+. .+..+|.++.|+...+.+|.+-
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI----~l~P~nAVyycNRAA-------Ay~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAI----ELDPTNAVYYCNRAA-------AYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----hcCCCcchHHHHHHH-------HHHHhcchHHHHHHHHHHHhcC
Confidence 45556777777776557778888888887763 456666655443333 4555666677777777777542
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+ .-..++..||.+|..+|++++|++.|+++|+ .+|++..+-.+|...-..++.
T Consensus 146 -------p-------~yskay~RLG~A~~~~gk~~~A~~aykKaLe------ldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 146 -------P-------HYSKAYGRLGLAYLALGKYEEAIEAYKKALE------LDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred -------h-------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhc------cCCCcHHHHHHHHHHHHHhcC
Confidence 2 2355788999999999999999999999885 478988888888776555543
No 93
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0039 Score=60.41 Aligned_cols=46 Identities=26% Similarity=0.704 Sum_probs=36.9
Q ss_pred CCCeeccccccccccCc-------eeccCCCcchHHhHHhcC-----------CCCCCCCCccc
Q 016258 87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK-----------DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~ 132 (392)
..+..|.||++...+.+ ...+|.|.||..||..|. .||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34789999999987433 125699999999999994 39999987765
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.81 E-value=0.074 Score=39.15 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
+..++.++...|++++|+..|++++++. +.. ...+..+|.++...|++++|+..|++++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----- 63 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALEL----- 63 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 4567888888899999999998887652 211 145677899999999999999888877664
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.|.+......++.++..+++
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 64 -DPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred -CCcchhHHHHHHHHHHHHHh
Confidence 34444556666766666655
No 95
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.77 E-value=0.14 Score=55.31 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=47.9
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.++...|++..|+.+++.+... .+.. .....++.++...|++++|+..|++.++.
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------- 765 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR----APSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKT------- 765 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 3445566665677777777777665332 1111 12334555555556666665555554432
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+.+ ...+..++.++..+|++++|+..|++++
T Consensus 766 ~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 766 HPND-------AVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred CCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1111 2334455555555566555555555544
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.77 E-value=0.25 Score=52.92 Aligned_cols=121 Identities=14% Similarity=0.003 Sum_probs=80.3
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
-+.+...+.+++++-...|.+.++..+++.. -++.+.+... .-+.+.+....+++++|...+++.|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~----~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~~~~~l--- 147 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGI----HQRFPDSSEA-------FILMLRGVKRQQGIEAGRAEIELYF--- 147 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHH----HhhCCCcHHH-------HHHHHHHHHHhccHHHHHHHHHHHh---
Confidence 3444556677777776777778887666554 3455555544 3445555656666666666665555
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
...+++ +..+..+|.++..+|++++|...|++++. .+|+.+..+-+++..+-.+|
T Consensus 148 ----~~~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 148 ----SGGSSS-------AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred ----hcCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcC
Confidence 555653 66788899999999999999999988875 34555555555665555444
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.76 E-value=0.06 Score=53.89 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
........++|..+...|++++|+..|+++|++. +++. +....+.++|.+|..+|++++|+..|++|++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPD----EAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345578999999999999999999999999773 3221 2225689999999999999999999999999
Q ss_pred H
Q 016258 353 R 353 (392)
Q Consensus 353 i 353 (392)
+
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 7
No 98
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.74 E-value=0.57 Score=45.62 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=87.7
Q ss_pred cchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHH
Q 016258 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 324 (392)
Q Consensus 245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla 324 (392)
.|+.++.-+...+.+....++-.+-. ...-..++-.+.--+..+|++-.|.++.+++.++.....++.. -+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~--------~a 246 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWS-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL--------QA 246 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchh-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH--------HH
Confidence 45556665655565555555432211 1222334555666667778888999999999988665443332 36
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
..+--+|++|+.+|+.+.|...|++|..+...+.+.-.+.-.+...+..|.-++-+
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~ 302 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ 302 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 77888999999999999999999999999999855555556666777777666543
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.71 E-value=0.092 Score=47.28 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH-HHhccC--HHHHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGD--LQAARSYYVRSLN 304 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l-~~~~g~--l~~A~~~ye~sL~ 304 (392)
|.+...+..+|.++...|++..|+..++.+. ++.+.+.++ +..++.+ +...|+ .++|+..|+++++
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----~l~P~~~~~-------~~~lA~aL~~~~g~~~~~~A~~~l~~al~ 138 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQAL----QLRGENAEL-------YAALATVLYYQAGQHMTPQTREMIDKALA 138 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHH-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3444567788898888999999998887653 445555543 4566665 455565 4677777766664
Q ss_pred HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
..+.+ ...+..+|.++..+|++++|+..|++++++.
T Consensus 139 -------~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 139 -------LDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred -------hCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34443 3578889999999999999999998887654
No 100
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.69 E-value=0.19 Score=53.74 Aligned_cols=24 Identities=0% Similarity=-0.067 Sum_probs=13.0
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHH
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~ 257 (392)
+..++.+....|++..|+..++++
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455544556666666555554
No 101
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.078 Score=52.62 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
..++-+||-.+..+|++++|++.|-+.+.|.+.. +..|-.++.+|+.+.+-.+|+++|-|+..
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~s--- 586 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQANS--- 586 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcc---
Confidence 3467788888888899999999888887775543 33466778888888887777777665543
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.-|.+..++..++.+|..-|+
T Consensus 587 ---lip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 587 ---LIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred ---cCCCCHHHHHHHHHHhhcccc
Confidence 346677778888887765543
No 102
>PRK12370 invasion protein regulator; Provisional
Probab=95.65 E-value=0.16 Score=53.14 Aligned_cols=45 Identities=11% Similarity=-0.162 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~ 376 (392)
.+..+|.++..+|++++|...|++.+ ...|+.......++.+|..
T Consensus 443 ~~~~la~~l~~~G~~~eA~~~~~~~~------~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 443 LLSMQVMFLSLKGKHELARKLTKEIS------TQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhh------hccchhHHHHHHHHHHHhc
Confidence 45678888888899888887765432 2334444444444444433
No 103
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.60 E-value=0.15 Score=48.75 Aligned_cols=83 Identities=18% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+..+|.++...|++++|+..|.+++++ .+. .+..+.++|.++..+|+++.|+..|++++++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-- 127 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL-------RPD-------MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-- 127 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 345778899999999999999999999874 232 3567889999999999999999999888764
Q ss_pred HhhcCCCchHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+|+......+++.++..+|
T Consensus 128 ----~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 128 ----DPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred ----CCCCHHHHHHHHHHHHHCC
Confidence 4555556666666655443
No 104
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.006 Score=58.44 Aligned_cols=45 Identities=27% Similarity=0.724 Sum_probs=37.1
Q ss_pred CCCeeccccccccccC------------ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258 87 IGPLSCMICQALLFEC------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+++-.|.||.+-+... |..+||||.+-..|+..|. .||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 3578999999985434 4999999999999999994 5999998843
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.53 E-value=0.38 Score=53.15 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=77.8
Q ss_pred hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
..++......|++..+..+++++.......+... .....+..++.++...|++++|...+++++++.+.......
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~-----~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYH-----YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 3455556567888888888888776666554422 22346788899999999999999999999987665321110
Q ss_pred CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.-.+.....++.++...|++++|...+++++.+.+..
T Consensus 570 ------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 570 ------PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred ------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 1112234457777777888888888888888877644
No 106
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.51 E-value=0.22 Score=53.79 Aligned_cols=163 Identities=19% Similarity=0.173 Sum_probs=89.1
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHH--------
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFL-------- 261 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~-------- 261 (392)
+-..+..|++++|...+.... ...+ .+...+..++.+...+|++..|...++.+....
T Consensus 29 a~~~~~~~~~~~A~~~~~~~~-------~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 94 (899)
T TIGR02917 29 AKSYLQKNKYKAAIIQLKNAL-------QKDP-------NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLP 94 (899)
T ss_pred HHHHHHcCChHhHHHHHHHHH-------HhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHH
Confidence 336778889998888775332 1112 122334445555555666666665555442210
Q ss_pred ----------------HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH------------------
Q 016258 262 ----------------MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR------------------ 307 (392)
Q Consensus 262 ----------------~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~------------------ 307 (392)
..+..............+..+|..+...|++++|+..|+++++...
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 174 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCC
Confidence 0000000001122345567788888888999999998888775321
Q ss_pred ---------HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 308 ---------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 308 ---------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.+....+ +....+..++.++...|++++|+..|++++. .+|.+......++.++...|
T Consensus 175 ~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~~~~~~~~~g 241 (899)
T TIGR02917 175 FDEARALIDEVLTADP-------GNVDALLLKGDLLLSLGNIELALAAYRKAIA------LRPNNPAVLLALATILIEAG 241 (899)
T ss_pred HHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcC
Confidence 0000011 1123344566777777777777777776654 35666666666666665554
Q ss_pred H
Q 016258 379 N 379 (392)
Q Consensus 379 ~ 379 (392)
+
T Consensus 242 ~ 242 (899)
T TIGR02917 242 E 242 (899)
T ss_pred C
Confidence 3
No 107
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.0079 Score=57.67 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=37.0
Q ss_pred CeeccccccccccCceeccCCCcc-hHHhHHhc----CCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVY-CKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~----~~CP~C~~~~~~ 132 (392)
...|-||+.-.+ +-+++||.|.. |..|.... ..||.||+++..
T Consensus 290 gkeCVIClse~r-dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR-DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc-ceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 478999999999 99999999986 99997665 469999997765
No 108
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.12 Score=49.47 Aligned_cols=58 Identities=22% Similarity=0.609 Sum_probs=45.3
Q ss_pred Ceecccccccccc-----CceeccCCCcchHHhHHhc-----CCCCCCCCCcc--c-----chhhhHHHHHHHHH
Q 016258 89 PLSCMICQALLFE-----CSKCTPCSHVYCKACISRF-----KDCPLCGADIE--K-----IEADTTLQDVVDRF 146 (392)
Q Consensus 89 ~~~C~iC~~~~~~-----~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~--~-----~~~n~~l~~~v~~~ 146 (392)
.+.|-||.+.+.. .|+.+.|||+||..|+... +.||.||.+.. . +..|+.+...+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3678888776553 4899999999999999876 35999999843 2 77788887777765
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.23 Score=50.35 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--Hh----------hcCCCCCcchhhHHHHHHHHHHHHHhcCCH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--AV----------KRHSNVPSQVLDVAVSLAKVADVDRSIGNE 340 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~--~~----------~~~~~~~~~~~dla~sl~~la~~~~~~g~~ 340 (392)
..|+..+..+|+.+...++++.++.+|+++|...+. .+ +........-.+.+...-.-|......|+|
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 447888888999999999999999999999985542 11 111100111123444444457788888999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
..|+.+|.+|+. .+|+++.+-.|++..|..|++.
T Consensus 375 ~~Av~~YteAIk------r~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 375 PEAVKHYTEAIK------RDPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred HHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHhhH
Confidence 999999999653 4599999999999999998875
No 110
>PRK12370 invasion protein regulator; Provisional
Probab=95.10 E-value=0.15 Score=53.44 Aligned_cols=117 Identities=14% Similarity=0.026 Sum_probs=67.5
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.+....|++.+|+..++++.. +.+.... ....+|.++...|++++|+..|++++++
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~-------a~~~lg~~l~~~G~~~eAi~~~~~Al~l------- 401 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL----LSPISAD-------IKYYYGWNLFMAGQLEEALQTINECLKL------- 401 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 334455555556666667666665533 2333332 4566677777778888888877777754
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+.... ....++.++...|++++|+..|++++.. .+|+.......++.++..+|+
T Consensus 402 ~P~~~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 402 DPTRAA-------AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred CCCChh-------hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCC
Confidence 232211 1122333455567777777766665432 245566666777777766665
No 111
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.09 E-value=0.071 Score=38.67 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+..+..+|.++...|++++|+..|++++.+ +|+++....+++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhC
Confidence 567888999999999999999999999986 6899999999999999988
No 112
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.06 E-value=0.062 Score=33.22 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
|..+.++|.++..+|++++|+..|++++++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3567899999999999999999999999863
No 113
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.05 E-value=0.25 Score=38.74 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=51.0
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~ 359 (392)
..|++.+|++.+.+..+.......... .......+-+++.+....|+.++|+..+++++.+-++..+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 358999999988888876554322221 2234555777999999999999999999999999998843
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.02 E-value=0.38 Score=38.23 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=68.9
Q ss_pred hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
...+......|++..|+.+++..... .+... ......-.+|.++...|+++.|+.+|++.+... +
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p 70 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKK----YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-------P 70 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-------C
Confidence 34455555778888888888766432 12111 112356678999999999999999999988532 2
Q ss_pred CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
... ....++..+|.++..+|+++.|+..|++++..
T Consensus 71 ~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 KSP----KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCC----cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 211 12445778899999999999999888777665
No 115
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.96 E-value=0.66 Score=45.19 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHH-----HHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV-----AVDGFQEA 350 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~-----A~~~~~ea 350 (392)
....--+++||...|+.+.|-..|+++..++..+.++..+ ...|.-.+..++.+....+ |+++-++.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--------v~al~g~Akc~~~~r~~~k~~~Crale~n~r~ 317 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--------VEALDGAAKCLETLRLQNKICNCRALEFNTRL 317 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3456678999999999999999999999999887665543 2234444455555444444 88888888
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+++-.++...--.--+.-+++++|..+|.+
T Consensus 318 levA~~IG~K~~vlK~hcrla~iYrs~gl~ 347 (518)
T KOG1941|consen 318 LEVASSIGAKLSVLKLHCRLASIYRSKGLQ 347 (518)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhccch
Confidence 888888733333334456778888666543
No 116
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.87 E-value=0.02 Score=43.77 Aligned_cols=42 Identities=26% Similarity=0.629 Sum_probs=29.6
Q ss_pred eeccccccccccCc-eeccCCCcchHHhHHhcC-------CCCCCCCCcc
Q 016258 90 LSCMICQALLFECS-KCTPCSHVYCKACISRFK-------DCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~ 131 (392)
-.||.|.-.-.+.| +.-.|+|.|-..||..|. .||.||+...
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34566655433334 334699999999999993 4999998653
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.76 E-value=0.18 Score=41.59 Aligned_cols=83 Identities=12% Similarity=0.078 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
....++..+...|++++|+..|++.+.+ .+.+ ...+..+|.++..+|++.+|+..|++++.+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY-------DPYN-------SRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 4567888888899999999999887654 2221 345667899999999999999888877664
Q ss_pred hcCCCchHHHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++......++.++..+|+.
T Consensus 81 --~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 81 --DPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred --CCCChHHHHHHHHHHHHcCCH
Confidence 577778888888888877653
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.76 E-value=0.76 Score=41.90 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=46.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.-.++.++...|++.+|+..|++.++..- .. ...+..+..++.++..+|++++|+.+++..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~----~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYP-------DT----PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCC-------CC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34678889999999999999999886522 11 134556778999999999999999876543
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.74 E-value=0.24 Score=48.86 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
+...|.-....|++++|+..|.++|++ .+. -+..+.++|.++..+|+++.|+..|++++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-------~P~-------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----- 65 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-------DPN-------NAELYADRAQANIKLGNFTEAVADANKAIEL----- 65 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 344567777889999999999999864 222 2446778999999999999999998888775
Q ss_pred cCCCchHHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|..+....+++.++..+|+.
T Consensus 66 -~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 66 -DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred -CcCCHHHHHHHHHHHHHhCCH
Confidence 577777777888888877764
No 120
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.71 E-value=0.015 Score=40.41 Aligned_cols=43 Identities=28% Similarity=0.843 Sum_probs=33.5
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHh--cCCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISR--FKDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~--~~~CP~C~~~~~~ 132 (392)
...|-.|...-. ..++++|+|..|..|+.. +..||.|..++..
T Consensus 7 ~~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGT-KGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccc-ccccccccceeeccccChhhccCCCCCCCcccC
Confidence 355667776644 789999999999999754 4789999987653
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.60 E-value=0.76 Score=50.81 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=86.0
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
.+.++...|++..+..+++++... +.... ..........++.++...|++++|...|++++...+....
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~---~~~~~---~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~----- 526 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAE---LPLTW---YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV----- 526 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc---CCCcc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-----
Confidence 445555677787888777766542 22211 1123345678899999999999999999999987664321
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHHH
Q 016258 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT--LKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~--~~p~~a~~l~~~~~~~~~l~ 378 (392)
....+..+.+++.++...|+++.|...+++++.+.+... ..+....+...++.++...|
T Consensus 527 ---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 527 ---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred ---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 113355778899999999999999999999999988762 11222333344444444443
No 122
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.56 E-value=0.015 Score=56.26 Aligned_cols=42 Identities=31% Similarity=0.847 Sum_probs=36.7
Q ss_pred eeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
-.|.||.+-=. +..+-||||..|..|+..|- .||.||..+..
T Consensus 370 eLCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 45899999855 89999999999999999994 49999988776
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.51 E-value=0.38 Score=45.34 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=63.7
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++..++..|+..... . +... ....+.-.||.+++..|++++|+..|++.++.. +.+. .
T Consensus 155 ~~~~y~~Ai~af~~fl~~---y-P~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-------P~s~----~ 215 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKK---Y-PDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-------PKSP----K 215 (263)
T ss_pred hcCCHHHHHHHHHHHHHH---C-cCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCc----c
Confidence 357777777776554332 2 2221 123456799999999999999999998887542 2221 2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
....+-++|.++..+|++++|+..|++.++
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355677899999999999999988886654
No 124
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=0.42 Score=48.16 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH----------------hhcCCCCCc---chhhHHH--------HHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----------------VKRHSNVPS---QVLDVAV--------SLAKV 330 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~----------------~~~~~~~~~---~~~dla~--------sl~~l 330 (392)
..+--+++...++++++|..+|..++++.... +-...++.. .+...|. ...-|
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl 543 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence 45555677777888888888888887754320 000111110 1111111 12347
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 331 ADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
|.+..++|+.++|+++|+++..+-+..
T Consensus 544 aq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 544 AQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 888899999999999999999887764
No 125
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.40 E-value=0.49 Score=44.63 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
..+|.++..+|++++|+.+|++++ ..+|++..++..++.++...|+.
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~------~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKAL------KLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHH------HHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHHhccccccccccccccccc------ccccccccccccccccccccccc
Confidence 457888999999988888877755 45789999999999999888764
No 126
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.037 Score=51.00 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=35.1
Q ss_pred CCeecccccccccc---------CceeccCCCcchHHhHHhcC------CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFE---------CSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---------~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
++..|.||..-+.. +...+.|+|+|=..||..|- .||.|++.+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45678888776542 34688999999999999992 49999987654
No 127
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.34 E-value=0.12 Score=31.67 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
..+..+|.++..+|++++|+..|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999999976
No 128
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.026 Score=53.84 Aligned_cols=47 Identities=30% Similarity=0.560 Sum_probs=38.5
Q ss_pred CCcCCCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCcc
Q 016258 84 SFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 84 ~~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
-.+.++..|+||-.-.. ..+..||+|.-|+.||.++ +.|-.|+..+.
T Consensus 417 lp~sEd~lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCCcccccCcceecccc-hhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 34457899999999877 8899999999999999998 45777876444
No 129
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.0056 Score=42.16 Aligned_cols=42 Identities=38% Similarity=0.738 Sum_probs=33.8
Q ss_pred eeccccccccccCceeccCCCcc-hHHhHHhcC-----CCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKCTPCSHVY-CKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
-.|.||.+-.. +.++-.|||.. |..|-.+.| .||.||+++..
T Consensus 8 dECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 56999999988 88999999864 888866653 49999986543
No 130
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.24 E-value=0.12 Score=31.72 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
..+-.+|.++..+|++++|+..|++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 457789999999999999999999999874
No 131
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.55 Score=47.06 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=77.4
Q ss_pred hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----------------
Q 016258 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR---------------- 307 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~---------------- 307 (392)
.++|.+|+.+|+.++.. ......++.-||.=+..+..-.+|++.|..+++|-.
T Consensus 343 r~eHEKAv~YFkRALkL-----------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKL-----------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHhHHHHHHHHHHHHhc-----------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 45566788887766432 222334677788888888888899999999888642
Q ss_pred -----------HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258 308 -----------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 308 -----------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~ 376 (392)
++..-.+. | ...+.-||++|+.+++.++|+.-|..|+..-+ .+.+.+.+++.+++.
T Consensus 412 ~Mh~YaLyYfqkA~~~kPn------D-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~ 478 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELKPN------D-SRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEE 478 (559)
T ss_pred cchHHHHHHHHHHHhcCCC------c-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHH
Confidence 11211222 1 23455689999999999999999988876533 245668888888887
Q ss_pred HHHH
Q 016258 377 LNNQ 380 (392)
Q Consensus 377 l~~~ 380 (392)
|.+.
T Consensus 479 l~d~ 482 (559)
T KOG1155|consen 479 LKDL 482 (559)
T ss_pred HHhH
Confidence 7653
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.21 E-value=0.65 Score=35.13 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=55.4
Q ss_pred hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhH
Q 016258 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dl 323 (392)
.|++..|+.+++........ .. -...+-.++..+...|++++|+..+++ ++.... .
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------------~ 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----NP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------------N 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----TH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------------H
T ss_pred CccHHHHHHHHHHHHHHCCC----Ch-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------------C
Confidence 46678888888776544322 10 122445589999999999999999988 322111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
....-.+|.++..+|++++|++.|+++
T Consensus 58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 222335699999999999999998875
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.11 E-value=0.72 Score=36.58 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
.-.++......|++++|+..|++.+.. .+... .....+..+|.++...|+++.|+.+|++++... .
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p 70 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK-------YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---P 70 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---C
Confidence 456777888889999999999988753 12211 123345679999999999999999988887532 2
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.++........++.++..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCC
Confidence 233334456666666665544
No 134
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.04 Score=53.67 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=38.5
Q ss_pred Ceecccccccccc----CceeccCCCcchHHhHHhc------CCCCCCCCCccc--chhhhHH
Q 016258 89 PLSCMICQALLFE----CSKCTPCSHVYCKACISRF------KDCPLCGADIEK--IEADTTL 139 (392)
Q Consensus 89 ~~~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~--~~~n~~l 139 (392)
..+||||++-..- ..+.+.|||.|-..||++| ..||.|.....+ +.+-..+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYAL 66 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHH
Confidence 3689999997653 2567889999999999999 359999876554 4444433
No 135
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.04 E-value=0.79 Score=49.67 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
+.-.++.++. +++...++..|..++.+.......-+ ...||++|..+..+|++.+|...|.+|+..+...
T Consensus 416 a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip---------~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 416 AWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIP---------PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCC---------HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 4445566664 34555559999999988776554422 4468999999999999999999999999997766
Q ss_pred -hcC---CCchHHHHHHHHHHHHHHH
Q 016258 358 -TLK---PEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 358 -~~~---p~~a~~l~~~~~~~~~l~~ 379 (392)
..+ .-...+..|++.+++.+++
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhh
Confidence 221 2234568899988888754
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.03 E-value=0.73 Score=38.93 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=63.2
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
+....+..|+..+|+..++..... - .++.+. ..+.-.|+.++...|++++|+..+++. .. ..
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~---~--~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~--~~- 115 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALAN---A--PDPELK---PLARLRLARILLQQGQYDEALATLQQI-------PD--EA- 115 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---C--CCHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhc-------cC--cc-
Confidence 455666788888888887765432 1 222232 234557888999999999999877441 00 00
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
-.......+|+++...|++++|+..|++|+
T Consensus 116 -----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 -----FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 112345679999999999999999999875
No 137
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.95 E-value=0.63 Score=34.91 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchH
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAG 365 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~ 365 (392)
+.|..+...|.-....|++++|+..|+++++.|.++ ...||...
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 457778888888889999999999999999999998 66666554
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.83 E-value=0.68 Score=39.97 Aligned_cols=83 Identities=7% Similarity=-0.077 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+-.++...+..|++++|+..|+-...+ ++ ..++-+-+||.++..+|++++|+..|..++.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp-------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---- 98 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY-------DA-------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---- 98 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Cc-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4556678888899999999999877644 22 24667788999999999999999999988754
Q ss_pred hcCCCchHHHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|+++..-.+.+.++-.+|+.
T Consensus 99 --~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 99 --KIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred --CCCCchHHHHHHHHHHHcCCH
Confidence 467777777888888777764
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.77 E-value=0.95 Score=37.31 Aligned_cols=83 Identities=23% Similarity=0.188 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~ 359 (392)
=+++..+...|+.++|+..|+++++. .-... +....+-.+|..+..+|++++|+..+++++. .
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~------~ 67 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAA-----GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALE------E 67 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------H
Confidence 35566778889999999999999862 11111 2234455799999999999999988877653 3
Q ss_pred CCC---chHHHHHHHHHHHHHHH
Q 016258 360 KPE---EAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 360 ~p~---~a~~l~~~~~~~~~l~~ 379 (392)
+|+ ...+..-++.++..+|+
T Consensus 68 ~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 68 FPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred CCCccccHHHHHHHHHHHHHCCC
Confidence 344 55555555666555554
No 140
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=0.34 Score=50.29 Aligned_cols=141 Identities=18% Similarity=0.130 Sum_probs=81.4
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHH----------H-hCCCCChhH-HHHH-----------HHHHHHHHHHHH
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFL----------M-KLPMDDLEI-IHTL-----------SVSLNKIGDLKY 287 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~----------~-~L~~~~~e~-~~~l-----------s~~~~~lg~l~~ 287 (392)
+..+-.+|..|+.++++..+..+|+...... . .|+--..++ ...| -+++--+|+.+.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 4566778888889999988888887652221 0 111100000 0111 134555699999
Q ss_pred hccCHHHHHHHHHHHHHHHHHH------hhcCCCCCcchhhHHHH---------------HHHHHHHHHhcCCHHHHHHH
Q 016258 288 YGGDLQAARSYYVRSLNVRRDA------VKRHSNVPSQVLDVAVS---------------LAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~~~------~~~~~~~~~~~~dla~s---------------l~~la~~~~~~g~~~~A~~~ 346 (392)
-+++.+.|+..|++++++-... .+.+.- ...-+|.|.. +--||.||.+++.++.|.-+
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence 9999999999999999854311 111000 0001222211 11277889999999888888
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 347 FQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 347 ~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
|++|++| .|.+..++--++.+++.++
T Consensus 512 fqkA~~I------NP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 512 FQKAVEI------NPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred HHhhhcC------CccchhHHhhhhHHHHHhh
Confidence 8777654 3444455555555554444
No 141
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.60 E-value=1.6 Score=43.84 Aligned_cols=95 Identities=9% Similarity=0.023 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHH-----------HHHhhcCCCCCcchh-----------hHH--HHHHHHHHHHH
Q 016258 280 NKIGDLKYYGGDLQAARSYYVRSLNVR-----------RDAVKRHSNVPSQVL-----------DVA--VSLAKVADVDR 335 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~-----------~~~~~~~~~~~~~~~-----------dla--~sl~~la~~~~ 335 (392)
-.++.++...|++++|...+++.++.. +....-.+++..... +-. ..+..+|.++.
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 344667777899999999998888732 111112222222111 112 34556788889
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 336 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 336 ~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
..|++++|.++|+.+... ..+|+...+. .++.++..+|+
T Consensus 347 ~~~~~~~A~~~le~a~a~----~~~p~~~~~~-~La~ll~~~g~ 385 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAAC----KEQLDANDLA-MAADAFDQAGD 385 (409)
T ss_pred HcccHHHHHHHHHHhHHh----hcCCCHHHHH-HHHHHHHHcCC
Confidence 999999999988843222 2245555544 66777665554
No 142
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.54 E-value=0.14 Score=48.23 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=37.9
Q ss_pred CCCeecccccccccc---CceeccCCCcchHHhHHhcC---CCCCCCCCccc
Q 016258 87 IGPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
...+.|||....|.. -..+.+|||+|+..+|.... .||+|..+|..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 357999999988752 14566999999999999886 69999999876
No 143
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.50 E-value=0.54 Score=42.29 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-DRSIGNE--DVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~-~~~~g~~--~~A~~~~~eal~i~ 354 (392)
.+..||.++...|++++|+..|++++++. +++ ...+..+|.+ +...|++ ++|...|++++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al--- 137 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR-------GEN-------AELYAALATVLYYQAGQHMTPQTREMIDKAL--- 137 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---
Confidence 57788999999999999999999988652 322 3455667775 3565653 44444433333
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 355 ESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 355 e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
..+|.+...+..++..+..+|+.
T Consensus 138 ---~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 138 ---ALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred ---HhCCCChhHHHHHHHHHHHcCCH
Confidence 56777777778788777766654
No 144
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.35 E-value=0.23 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
..+.++|.++..+|++++|+..|+++|++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467899999999999999999999999863
No 145
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=0.32 Score=48.95 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
....+..+++.|+-.+..|.|++|+.+|.++|+..-. -..-++|++..|+.+|++++.++.-.+|+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--------------epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--------------EPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--------------CchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 3456677889999999999999999999999975321 03457788888888888877775544444
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
+-.|+-+-.+.|+++.++.||++-
T Consensus 177 ------El~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 177 ------ELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred ------hcCcHHHHHHHHHHHHHHhhccHH
Confidence 446776667777888888887764
No 146
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.019 Score=53.48 Aligned_cols=41 Identities=29% Similarity=0.696 Sum_probs=35.8
Q ss_pred CeeccccccccccCceeccCCCcc-hHHhHHhcCCCCCCCCCc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVY-CKACISRFKDCPLCGADI 130 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~~~CP~C~~~~ 130 (392)
...|.||.+..+ +=+.++|||.. |..|=.+...||.||+.+
T Consensus 300 ~~LC~ICmDaP~-DCvfLeCGHmVtCt~CGkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR-DCVFLECGHMVTCTKCGKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc-ceEEeecCcEEeehhhccccccCchHHHHH
Confidence 467999999988 88999999976 999988888999999743
No 147
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.23 E-value=0.38 Score=35.13 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=44.2
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
..++...+++++|+..+++.+.+ .+++ ...+-..|.++..+|++++|+..|++++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-------DPDD-------PELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-------Cccc-------chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45777888999999988888866 3332 334556889999999999999999888843
No 148
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.20 E-value=0.65 Score=43.75 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...++.++..+|+.++|+.+|++.+.. .+. | ...+..+|+++...|+.++|...+++++..++
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~-------~p~------d-~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKL-------NPD------D-PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHhccccccccccccccccccc-------ccc------c-cccccccccccccccccccccccccccccccC
Confidence 345677888888999999988887743 332 2 44677899999999999999999999988765
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.12 E-value=1.9 Score=46.19 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=92.3
Q ss_pred HHHHhhcHHHHHHHhhhcHHHH--HHHHHhcCCcH---HHHHHH-----HHHHhhhhhhhhhhcchhHHHhHHHHHH---
Q 016258 192 RAFRAQNVESAKSRLSLCTEDI--RDQIERMGNTS---ELCSQL-----GAVLGMLGDCCRAMGDADAAVAYFADSV--- 258 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~--~~~l~~~~~~~---~~C~~h-----~~~L~~~c~~C~~~gdhh~a~~~~e~~~--- 258 (392)
-|+.-|-+++|+..|..|..+- ..++...+.-. +.-..| ...+..|...-...+|-..|+.+||.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 4556677888888888887552 22222221111 111111 1123334433346677788888888772
Q ss_pred -HHHHhCCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH----hhcCCCCCcch----hhHH
Q 016258 259 -EFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----VKRHSNVPSQV----LDVA 324 (392)
Q Consensus 259 -~~~~~L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~----~~~~~~~~~~~----~dla 324 (392)
+.-+-|...-..+...+. ..+...|...+..|+.+.|+.+|+.+-.-.-.+ ..-......++ -|.|
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A 968 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA 968 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH
Confidence 222222222222222222 345566777888899999999999987633111 00111111111 1334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.. -+||..|++.|+..+|+.+|.+|...-.-+
T Consensus 969 Ac-YhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 969 AC-YHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred HH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 32 368999999999999999998887665544
No 150
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.94 E-value=0.063 Score=49.01 Aligned_cols=59 Identities=25% Similarity=0.591 Sum_probs=41.6
Q ss_pred Ceecccccccccc-CceeccCCCcchHHhHHhc-C-CCCCCCCCcccchhhhHHHHHHHHHH
Q 016258 89 PLSCMICQALLFE-CSKCTPCSHVYCKACISRF-K-DCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~~~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~-~-~CP~C~~~~~~~~~n~~l~~~v~~~~ 147 (392)
.+.|..|...... +=.++.|.|.||..|.... . .||+|+.++..+..|..+-.-|-.|+
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~~ik~~F 64 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPTDIKSYF 64 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccchhHHHHc
Confidence 3567777765332 2467789999999999765 3 69999999777666655555555554
No 151
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.53 E-value=2.6 Score=39.15 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=77.9
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
++..-...|++..|+..+.+. ..+.+.+.+ .++-+|-++...|+++.|...|.+++++.-. +
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA----~~l~p~d~~-------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~--- 167 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKA----ARLAPTDWE-------AWNLLGAALDQLGRFDEARRAYRQALELAPN----E--- 167 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHH----hccCCCChh-------hhhHHHHHHHHccChhHHHHHHHHHHHhccC----C---
Confidence 444444566666666665443 345555543 5778888999999999999999999976321 1
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
...++|||-.+.-.|+++.|..++..+. ...+.+..+..|++.++...|+.
T Consensus 168 -------p~~~nNlgms~~L~gd~~~A~~lll~a~------l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 168 -------PSIANNLGMSLLLRGDLEDAETLLLPAY------LSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred -------chhhhhHHHHHHHcCCHHHHHHHHHHHH------hCCCCchHHHHHHHHHHhhcCCh
Confidence 2357899999999999998887654443 44555677777777777666653
No 152
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.50 E-value=2.2 Score=42.75 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
...+.||+.-|....-.++|+.+|+++-- -.|...-|+-++++.+...||.
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaal------iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAAL------IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHhcccH
Confidence 34567777777766666677766665532 3467777888888887776654
No 153
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=3.9 Score=37.98 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
+...++-+...+..+.++.++|+++..+..+...-.+ -+..|.+-|.+.++ -+-+.|+.+|++++.++++-
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--------AAmaleKAak~len-v~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--------AAMALEKAAKALEN-VKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--------HHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc
Confidence 3444444555555666666777777666655433222 24455666666655 44566666777776666654
Q ss_pred hcCCCchHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~ 378 (392)
........+....+.++=.++
T Consensus 144 dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhH
Confidence 332333333444444443333
No 154
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.079 Score=49.78 Aligned_cols=41 Identities=32% Similarity=0.721 Sum_probs=33.0
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc--CCCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~ 129 (392)
..+|.-|---+..=-++++|.|.||..|-... +.||.|...
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDR 132 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccH
Confidence 57788887665546789999999999998665 579999753
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.39 E-value=0.38 Score=29.29 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
..+..+|.++...|++++|+..|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999976
No 156
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.39 E-value=5.9 Score=35.01 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGG---DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI----GNEDVAVDGFQEA 350 (392)
Q Consensus 278 ~~~~lg~l~~~~g---~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~----g~~~~A~~~~~ea 350 (392)
.+.+.|.....+. +..+++.+|++++...+.++.-.|.. ...+-.+|.++..+ .+..+|..+|++|
T Consensus 27 nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 27 NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4555555554443 44567788888888888877777764 44555555555544 3446888999999
Q ss_pred HHHHHHh-hcCCCchHHHHHHHHH
Q 016258 351 IKRLESL-TLKPEEAGLEQRRLSV 373 (392)
Q Consensus 351 l~i~e~l-~~~p~~a~~l~~~~~~ 373 (392)
....++. ..+|.+..+...|...
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999998 8889988888776654
No 157
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.19 E-value=0.33 Score=31.34 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
..+..||++....+++++|+.-|+++++|.+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999987
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.16 E-value=1.7 Score=41.04 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=57.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~ 362 (392)
-.+....|++++|+..|++.++. .++.. -....+-|+|.+|...|+++.|+..|+.+++.. ..+|.
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~ 215 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKK-------YPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPK 215 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH-------CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcc
Confidence 33444457888888887776644 34321 123456799999999999999998877766543 34556
Q ss_pred chHHHHHHHHHHHHHHH
Q 016258 363 EAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 363 ~a~~l~~~~~~~~~l~~ 379 (392)
....+.+++.++..+++
T Consensus 216 ~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 216 AADAMFKVGVIMQDKGD 232 (263)
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 66777778888766654
No 159
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=3.5 Score=37.98 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=34.6
Q ss_pred hhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHH
Q 016258 241 CRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 241 C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~ 307 (392)
|+..++..+|+...+.+-++....+. -.+-+.-.-.|+++++.. .++++|+..|+++-+-..
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Gr-----f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGR-----FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhH-----HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444333322 112223344678888765 788888888888877554
No 160
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.08 E-value=1.4 Score=42.66 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=59.4
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
++.+....|++..+...++++.+ +.+.. ......++.+++..|++++|+..|++.+..... .+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~----~~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~-- 182 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALE----LNPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SS-- 182 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh----hCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----Cc--
Confidence 33455556666666666655533 23333 234667788888888888888888887754321 11
Q ss_pred CcchhhH-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 317 PSQVLDV-AVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 317 ~~~~~dl-a~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
+. ....-.++.++..+|++++|+..|+++
T Consensus 183 -----~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 183 -----MLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred -----chhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11 223346888888889998888888887
No 161
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.97 E-value=1.3 Score=37.17 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
+..+.--|......|+++.|++.|.++|.+.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~ 73 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA 73 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc
Confidence 3334444444555678888888888877653
No 162
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=1.2 Score=43.98 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh-hHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~-dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
..+.....-|+.++..|+|..|...|++++...........+....+. .....+.||+.++..++.|.+|+..
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 345566777999999999999999999999865422111111111111 2223455777777777777666654
No 163
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.57 E-value=0.58 Score=30.86 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLS 372 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~ 372 (392)
.+..+|.++..+|++++|+..|+++++ .+|++......++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA------LDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------HCcCCHHHHHHhhh
Confidence 356789999999999999988887775 57887777666553
No 164
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.52 E-value=13 Score=40.33 Aligned_cols=75 Identities=12% Similarity=0.303 Sum_probs=50.1
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHh-----CCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMK-----LPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~-----L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~ 301 (392)
..+.|.|.--...|+...|+.+|+.+.+.... +.++..+...... .+--.|+..|++.|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35678887554789999999999988777654 2222222221111 1233467888899999999999988
Q ss_pred HHHHH
Q 016258 302 SLNVR 306 (392)
Q Consensus 302 sL~i~ 306 (392)
+-...
T Consensus 993 Aqafs 997 (1416)
T KOG3617|consen 993 AQAFS 997 (1416)
T ss_pred HHHHH
Confidence 76533
No 165
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.47 E-value=1.2 Score=43.08 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
....++.++...|++++|...|++++++. +++ ...+..++.++...|++++|+.+|++
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-------PDD-------AWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45566777777888888888888887652 111 22344456666666666666665543
No 166
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.088 Score=50.71 Aligned_cols=42 Identities=31% Similarity=0.744 Sum_probs=33.9
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc---CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF---KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~---~~CP~C~~~~~~ 132 (392)
.+..|.||++-.. +.+-+||||..| |+.-. ..||+||..+..
T Consensus 304 ~p~lcVVcl~e~~-~~~fvpcGh~cc--ct~cs~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK-SAVFVPCGHVCC--CTLCSKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCcc-ceeeecCCcEEE--chHHHhhCCCCchhHHHHHH
Confidence 5688999999988 799999999987 65433 579999986544
No 167
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.41 E-value=5.8 Score=36.14 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.++...-+|+-++...|+-+....+++++++...++......-.... +-+..+=-+|++...+|++++|+.+|.+.+..
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~-~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM-DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 55667778888999999988999999999998888887665433322 33444557999999999999999888776543
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.25 E-value=1.7 Score=41.22 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...+++.++.-|+-...-++|++|+..|.++|++ .+.+ ++-+.+-+.+|..+|.++.|+.-.+.++
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-------~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-------DPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------CCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4567788888898888889999999999999865 3332 5678889999999999999997766666
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.| +|.-.-...|++..|..+|+.
T Consensus 143 ~i------Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 143 SI------DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred hc------ChHHHHHHHHHHHHHHccCcH
Confidence 54 333333344555555555443
No 169
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.18 E-value=0.6 Score=28.49 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
.++-.+|.++..+|++++|+.+|++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567899999999999999999999998753
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.17 E-value=2.3 Score=37.57 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHH
Q 016258 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 296 ~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~ 374 (392)
+-.|+++.+..+.....++.+.+.+......|-.|++. ..-.++..+|++|+.-++.. ..+|+...-++.++..|
T Consensus 4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34677888888877888887655555555455555543 33356778888888888886 88899999999999999
Q ss_pred HHHHHHhhc
Q 016258 375 EFLNNQLSE 383 (392)
Q Consensus 375 ~~l~~~~~~ 383 (392)
..++...++
T Consensus 80 ts~A~l~~d 88 (186)
T PF06552_consen 80 TSLAFLTPD 88 (186)
T ss_dssp HHHHHH---
T ss_pred HHHHhhcCC
Confidence 988876554
No 171
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=0.17 Score=46.11 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=37.2
Q ss_pred CeeccccccccccC---ceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
.+.||||.+.|.+. .+.-+|||+||..|++.+ ..||+|..++..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 48899999999863 567799999999999998 459999987654
No 172
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.06 E-value=7.6 Score=42.08 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=89.1
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
|..+|.+|++++|...+- |.++. =|.+...+..++.++..+|++.++.-.+-. ...|.+.+.
T Consensus 146 AN~lfarg~~eeA~~i~~---EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~ll----AAHL~p~d~ 207 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILM---EVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLL----AAHLNPKDY 207 (895)
T ss_pred HHHHHHhCCHHHHHHHHH---HHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHH----HHhcCCCCh
Confidence 458888999999987553 22211 133456788899999889999887755433 356667665
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
+ .+..++++...+|.+..|+-+|.++|.. .+.+ ...+-+-+.++.+.|++..|.+.|.+
T Consensus 208 e-------~W~~ladls~~~~~i~qA~~cy~rAI~~-------~p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 208 E-------LWKRLADLSEQLGNINQARYCYSRAIQA-------NPSN-------WELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred H-------HHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCcc-------hHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 5 4566777888888888999999998854 3332 22344567889999999999998887
Q ss_pred HHHHH
Q 016258 350 AIKRL 354 (392)
Q Consensus 350 al~i~ 354 (392)
.+...
T Consensus 267 l~~~~ 271 (895)
T KOG2076|consen 267 LLQLD 271 (895)
T ss_pred HHhhC
Confidence 76544
No 173
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.91 E-value=2.1 Score=39.25 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~ 360 (392)
-+..++..+|+.+.|.+.|+++|.+. +. -++.|||-|-.+..+|.+++|..+|++|+.- ..-
T Consensus 74 ~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~-------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y 135 (250)
T COG3063 74 VRAHYYQKLGENDLADESYRKALSLA-------PN-------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAY 135 (250)
T ss_pred HHHHHHHHcCChhhHHHHHHHHHhcC-------CC-------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCC
Confidence 34555555555555555555555331 11 1334556665555556655555555555421 222
Q ss_pred CCchHHHHHHHHH
Q 016258 361 PEEAGLEQRRLSV 373 (392)
Q Consensus 361 p~~a~~l~~~~~~ 373 (392)
+..++...|++-+
T Consensus 136 ~~~s~t~eN~G~C 148 (250)
T COG3063 136 GEPSDTLENLGLC 148 (250)
T ss_pred CCcchhhhhhHHH
Confidence 4444444444444
No 174
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.70 E-value=1.8 Score=44.40 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
..-||.|++..|+|+.|++.|+.+|.+ .|. -....|+||..+.+-.+.++|++.|++|+++.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v-------~Pn-------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---- 494 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV-------KPN-------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ---- 494 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc-------CCc-------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----
Confidence 456788998899999999999998854 333 25578999999999899999999999999764
Q ss_pred cCCCchHHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
|.=...++|++..+=.||-.
T Consensus 495 --P~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 495 --PGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred --CCeeeeehhhhhhhhhhhhH
Confidence 44344456666666555543
No 175
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=90.63 E-value=6.3 Score=38.03 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~ea 350 (392)
+|++....|+|++|++.++.+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHhccchHHHHHHHHHH
Confidence 666777777766666554433
No 176
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.58 E-value=0.62 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
.....||++....++|.+|+..|+++|++++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999998765
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=7.9 Score=38.32 Aligned_cols=127 Identities=17% Similarity=0.108 Sum_probs=81.7
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh----HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE----IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e----~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
...+..|...+..|++..|...|+.+...+.--.....+ .....-....||...+..++++.+|+....+.|++
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 345566777778899988888888775444422221111 22233346778888888888888888877777754
Q ss_pred HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.+.++ ..|=.-|.++..+|+|+.|...|++++++ .|.+.....-|..+....+
T Consensus 287 -----~~~N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 287 -----DPNNV-------KALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIR 339 (397)
T ss_pred -----CCCch-------hHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHH
Confidence 34332 34555678888889999998888887753 5666665555555544433
No 178
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=90.46 E-value=0.058 Score=40.00 Aligned_cols=43 Identities=28% Similarity=0.790 Sum_probs=20.2
Q ss_pred CeeccccccccccC-----ceec--cCCCcchHHhHHhcC---------------CCCCCCCCcc
Q 016258 89 PLSCMICQALLFEC-----SKCT--PCSHVYCKACISRFK---------------DCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~~-----p~~~--~C~h~fC~~Ci~~~~---------------~CP~C~~~~~ 131 (392)
++.|+||..++.+. .+.. .|+..|=..|+..|+ .||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999985522 2222 688888889999982 2999998764
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.41 E-value=0.81 Score=34.59 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=46.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 016258 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~ 368 (392)
.|+++.|+..|++.++.... + .....+-++|.++..+|++++|+..+++ +..++.......
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-------~-----~~~~~~~~la~~~~~~~~y~~A~~~~~~-------~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-------N-----PNSAYLYNLAQCYFQQGKYEEAIELLQK-------LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-------T-----HHHHHHHHHHHHHHHTTHHHHHHHHHHC-------HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-------C-----hhHHHHHHHHHHHHHCCCHHHHHHHHHH-------hCCCCCCHHHHH
Confidence 57888888888888865432 0 0122445589999999999999988877 212233344455
Q ss_pred HHHHHHHHHHHH
Q 016258 369 RRLSVLEFLNNQ 380 (392)
Q Consensus 369 ~~~~~~~~l~~~ 380 (392)
.++.++..|++.
T Consensus 63 l~a~~~~~l~~y 74 (84)
T PF12895_consen 63 LLARCLLKLGKY 74 (84)
T ss_dssp HHHHHHHHTT-H
T ss_pred HHHHHHHHhCCH
Confidence 557777666653
No 180
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=90.31 E-value=8 Score=38.60 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHH-----HHhhc-CCCCCcchhhH-----------HHHHHHHHHHHHhcCCHHH
Q 016258 280 NKIGDLKYYGGDLQAARSYYVRSLNVRR-----DAVKR-HSNVPSQVLDV-----------AVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~-----~~~~~-~~~~~~~~~dl-----------a~sl~~la~~~~~~g~~~~ 342 (392)
-.++......|+.++|....++.++... .+... ...+....... +..+--+|.++...+++.+
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3446677778999999998888887220 01110 11111111122 2234457888999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 343 AVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 343 A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
|.++|++++++ .|+...+. .++.++..+|+
T Consensus 347 A~~~le~al~~------~P~~~~~~-~La~~~~~~g~ 376 (398)
T PRK10747 347 ASLAFRAALKQ------RPDAYDYA-WLADALDRLHK 376 (398)
T ss_pred HHHHHHHHHhc------CCCHHHHH-HHHHHHHHcCC
Confidence 99999888765 45554433 35555555544
No 181
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.15 E-value=0.34 Score=46.31 Aligned_cols=44 Identities=36% Similarity=0.844 Sum_probs=37.0
Q ss_pred cCCCeeccccccccccCceeccCCCcchHHhHHhc------CCCCCCCCCc
Q 016258 86 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADI 130 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~ 130 (392)
+.+.-.|.||..-+. =..++||+|..|..|-.+. +.||.|+..-
T Consensus 58 DEen~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 445688999999977 8889999999999997665 5799999754
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=89.98 E-value=6.2 Score=34.32 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=84.8
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
++.--+..|++.+|..+|.- +-.+..-+.++ +-.||......+++++|+..|.-+..+.. .++.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~----L~~~d~~n~~Y-------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----~dp~- 106 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRF----LCIYDFYNPDY-------TMGLAAVCQLKKQFQKACDLYAVAFTLLK----NDYR- 106 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHH----HHHhCcCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHccc----CCCC-
Confidence 33333488999999888853 23344444433 56778888888899999999888775421 1111
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKPPES 388 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~~~~~ 388 (392)
..=+.|+.+..+|+...|...|+-++. .|.++.+..+-...+..|.+...+....+
T Consensus 107 ---------p~f~agqC~l~l~~~~~A~~~f~~a~~-------~~~~~~l~~~A~~~L~~l~~~~~~~~~~~ 162 (165)
T PRK15331 107 ---------PVFFTGQCQLLMRKAAKARQCFELVNE-------RTEDESLRAKALVYLEALKTAETEQHSEQ 162 (165)
T ss_pred ---------ccchHHHHHHHhCCHHHHHHHHHHHHh-------CcchHHHHHHHHHHHHHHHcccccccccc
Confidence 123578999999999999998888877 47788888888888887777766655544
No 183
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.91 E-value=0.17 Score=41.89 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=36.6
Q ss_pred CeeccccccccccCceecc---CCCcchHHhHHhcC-------CCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTP---CSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~---C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
-+.|.||.+...+..+.-| ||-+.|..|....| .||.|+.++.+
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4889999999886666665 99999999998865 49999987765
No 184
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=0.34 Score=47.52 Aligned_cols=32 Identities=41% Similarity=1.048 Sum_probs=26.5
Q ss_pred Ceecccccccccc--CceeccCCCcchHHhHHhc
Q 016258 89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~ 120 (392)
-+.|.||.+...- .-+-+||+|.||+.|+..+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 5889999987441 3678899999999999887
No 185
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.60 E-value=6.3 Score=43.01 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=91.6
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
.+...|+.++|...+..+.. ..+ .....+..++...+..|++..|+.++++.... .+.....
T Consensus 24 ia~~~g~~~~A~~~~~~~~~-------~~~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a 85 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRV-------HMQ-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDY 85 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHh-------hCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHH
Confidence 66778888888766542211 001 11223556677777888888888888776433 3444433
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...++.++...|++++|+..+++.++. .+++ +. +..+|.++...|++++|+..|++++
T Consensus 86 -------~~~la~~l~~~g~~~eA~~~l~~~l~~-------~P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 86 -------QRGLILTLADAGQYDEALVKAKQLVSG-------APDK-------AN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346777777889999998888877744 4442 33 5668889999999999998888777
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLE 375 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~ 375 (392)
++ +|++..+...++.++.
T Consensus 144 ~~------~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 144 PR------APQTQQYPTEYVQALR 161 (765)
T ss_pred Hh------CCCCHHHHHHHHHHHH
Confidence 63 5676666666666554
No 186
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.49 E-value=1.3 Score=44.48 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHH--HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVR--SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~--sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
.+..+|.++...|++++|+++|++ +++. .+. .....++|.++..+|+.++|.++|++++..+-
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-------~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKE-------QLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhc-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 355679999999999999999995 4433 222 11245899999999999999999999998887
Q ss_pred Hhh
Q 016258 356 SLT 358 (392)
Q Consensus 356 ~l~ 358 (392)
.+.
T Consensus 402 ~~~ 404 (409)
T TIGR00540 402 AIQ 404 (409)
T ss_pred ccc
Confidence 763
No 187
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.42 E-value=0.15 Score=54.34 Aligned_cols=39 Identities=33% Similarity=0.738 Sum_probs=33.8
Q ss_pred eeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCc
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADI 130 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~ 130 (392)
+.|.+|.+ .. .++.+.|+|.||..|+...+ .||.|+..+
T Consensus 455 ~~c~ic~~-~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 79999999 45 99999999999999998874 399998644
No 188
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.41 E-value=19 Score=33.97 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=76.4
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g-~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~ 321 (392)
..|++.-|..++.++..... ...++....|+...-++|.-....+ +++.|...+++++++.....+.........-
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~---~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN---SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh---cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 57888889989888877765 3345667889999999999999999 9999999999999987653222222222211
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
=....|.-|+.++...+..+ .+++++.+++.+
T Consensus 82 lr~~iL~~La~~~l~~~~~~----~~~ka~~~l~~l 113 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYE----SVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHH
Confidence 23345667888888777653 445566666666
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.22 E-value=3.7 Score=33.76 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=62.7
Q ss_pred hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
......+|++.+|+++|+++... -|.+. .....+=.++..+..+|++++|+..+++.+.. .+...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~--gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p~~~ 72 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA--GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALEE-------FPDDE 72 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc
Confidence 33445678899999999988542 23221 11234557888999999999999998877632 22210
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
. . ...-..++.+...+|+.++|+..+-+++.
T Consensus 73 -~--~-~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 -L--N-AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred -c--c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 0 11112467788899999999988766654
No 190
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=89.22 E-value=2.2 Score=35.90 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
+.=.++.++...|++++|+..|++.++.. ++ ..+..++ .-+|+.++..+|++++|+..++. +
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-------~d--~~l~~~a--~l~LA~~~~~~~~~d~Al~~L~~-------~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-------PD--PELKPLA--RLRLARILLQQGQYDEALATLQQ-------I 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CC--HHHHHHH--HHHHHHHHHHcCCHHHHHHHHHh-------c
Confidence 34457888889999999999999988632 11 0111222 33688999999999888876633 4
Q ss_pred hcCCCchHHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
...+-.+.....++.++...|+
T Consensus 112 ~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 112 PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred cCcchHHHHHHHHHHHHHHCCC
Confidence 3334444555666777666554
No 191
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.07 E-value=9.6 Score=41.72 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=89.6
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
+....|++.+|...|+.-++... +.-..+-+++.+|..+|.+..|+..|+...... ......+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~--------------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf--~~~~~~~- 717 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATS--------------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF--YKKNRSE- 717 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHh--------------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCHH-
Confidence 44455666666666654433222 011245567788888899999999998764332 2334444
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc-----CCHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI-----GNEDVAVDG 346 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~-----g~~~~A~~~ 346 (392)
.+.-|+..++..|.|++|+.....++ ...+.+....+.++..+-+++....+. .+...|+..
T Consensus 718 ------vl~~Lara~y~~~~~~eak~~ll~a~-------~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 718 ------VLHYLARAWYEAGKLQEAKEALLKAR-------HLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHHHHHHH-------HhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45666777777777777777555544 446777778889988888888644433 444677888
Q ss_pred HHHHHHHHHHh
Q 016258 347 FQEAIKRLESL 357 (392)
Q Consensus 347 ~~eal~i~e~l 357 (392)
++.+.++.+.+
T Consensus 785 le~a~r~F~~l 795 (1018)
T KOG2002|consen 785 LEEARRLFTEL 795 (1018)
T ss_pred HHHHHHHHHHH
Confidence 88888998888
No 192
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.93 E-value=0.52 Score=45.11 Aligned_cols=60 Identities=22% Similarity=0.480 Sum_probs=43.4
Q ss_pred cCCCeeccccccccccCceeccCCCcchHHhHHhc-CCCCCCCCCcccchhhhHHHHHHHHH
Q 016258 86 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEKIEADTTLQDVVDRF 146 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~~~~n~~l~~~v~~~ 146 (392)
..+-+.||||...+..+..+=.=||.-|..|-... ..||.|+.++..+ .++.+..+++..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~-R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI-RCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccH-HHHHHHHHHHhc
Confidence 34679999999998844444455899999999555 6799999988854 445555554443
No 193
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=1.3 Score=45.04 Aligned_cols=90 Identities=16% Similarity=0.268 Sum_probs=63.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHH--------------------HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVR--------------------RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG 338 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~--------------------~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g 338 (392)
+..-|+.....|+++.|+..|.+++.+- ..++......+..-.+++..++.+|.....+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 3444566666778888888777777632 11222222222233477888899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258 339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 339 ~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~ 374 (392)
+|++|+..|.+.|+ .+|.+..+..++...+
T Consensus 85 ~~~eA~~ay~~GL~------~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLE------KDPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhh------cCCchHHHHHhHHHhh
Confidence 99999999988764 5788888888888877
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=88.52 E-value=16 Score=32.78 Aligned_cols=166 Identities=18% Similarity=0.145 Sum_probs=84.5
Q ss_pred hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
...+...+..|++..|...|..-. ...+... .-...+.+++..++..|++..|+..++..... .+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~-------~~~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----yP 73 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLI-------DRYPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----YP 73 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH-------HH-TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------HHCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CC
Confidence 344568899999999998885221 1111111 11234567788888999998888877665433 22
Q ss_pred CChhHHHHHHHHHHHHHHHHH-----------hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc------hhhHHHHH--
Q 016258 267 DDLEIIHTLSVSLNKIGDLKY-----------YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ------VLDVAVSL-- 327 (392)
Q Consensus 267 ~~~e~~~~ls~~~~~lg~l~~-----------~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~------~~dla~sl-- 327 (392)
..+. +..++-.+|.... ..+...+|+..|+.. ..+.|+..-. +..+...|
T Consensus 74 ~~~~----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-------i~~yP~S~y~~~A~~~l~~l~~~la~ 142 (203)
T PF13525_consen 74 NSPK----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL-------IKRYPNSEYAEEAKKRLAELRNRLAE 142 (203)
T ss_dssp T-TT----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH-------HHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCcc----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH-------HHHCcCchHHHHHHHHHHHHHHHHHH
Confidence 2222 1223333333322 222334444444444 4444443211 11222222
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 328 --AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 328 --~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
-.+|..|...|.+..|+..|+..++-.-.. +.....+..+...+..||...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t---~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDT---PAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhCChH
Confidence 247788999999999998877655433222 222334566677777776554
No 195
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=88.22 E-value=0.41 Score=32.56 Aligned_cols=39 Identities=26% Similarity=0.624 Sum_probs=17.4
Q ss_pred cccccccccc-Cceec--cCCCcchHHhHHhcC-----CCCCCCCCc
Q 016258 92 CMICQALLFE-CSKCT--PCSHVYCKACISRFK-----DCPLCGADI 130 (392)
Q Consensus 92 C~iC~~~~~~-~p~~~--~C~h~fC~~Ci~~~~-----~CP~C~~~~ 130 (392)
||+|.+.+-. +.... +|+..+|..|+.+.. .||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6777776621 22333 578888999987764 499999865
No 196
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=88.16 E-value=7.8 Score=38.64 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=82.1
Q ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHH
Q 016258 262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED 341 (392)
Q Consensus 262 ~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~ 341 (392)
.+|-....+++..-..++.-+.++-..+..|+-|+.....++...+++. -+..++..|..+... ++|.
T Consensus 67 ~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~-----------MLv~a~~qL~~~~~~-r~Y~ 134 (383)
T PF04100_consen 67 QELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQ-----------MLVTAVEQLKELAKK-RQYK 134 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHc-CCHH
Confidence 3444444556666667777777777777888888888888888776653 455566666665554 8999
Q ss_pred HHHHHHHHHHHHHHHh---hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 342 VAVDGFQEAIKRLESL---TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 342 ~A~~~~~eal~i~e~l---~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
++...++....+++.. ..-|.++.+..++..+...|..++-+
T Consensus 135 e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~ 179 (383)
T PF04100_consen 135 EIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFE 179 (383)
T ss_pred HHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 55688888899999888888876543
No 197
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.08 E-value=4.4 Score=30.56 Aligned_cols=39 Identities=23% Similarity=0.095 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
|..+-+.|.-....|++++|+.+|.+++..+..+ ...|+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4455566677777899999999999999999997 55554
No 198
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=3.3 Score=41.19 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhh-hhhhhhcch-hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLG-DCCRAMGDA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 226 ~C~~h~~~L~~~c-~~C~~~gdh-h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL 303 (392)
.-+.-.+.|.+|| .+|.-.--- .+|..+++.++. ..+.+. .+...+.+|...-|.++.++...++.|
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-------~~P~Y~----~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-------INPIYT----PAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-------cCCccH----HHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 4555567788887 566211111 556656554432 122332 367788999988899999999999888
Q ss_pred HHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+.- | .+-.++||++......+++|.++|..|+.+
T Consensus 466 ~~~~--------------D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 466 IIFP--------------D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhcc--------------c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6532 2 224568999999999999999999887753
No 199
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.00 E-value=6 Score=28.80 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 361 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p 361 (392)
-|..+.+.|.-....|++++|+.+|.+++..+... ...+
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 35556667777777899999999999999999998 4333
No 200
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.89 E-value=1.7 Score=41.90 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=71.5
Q ss_pred hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
.++|-+|.-.+.++-+.+.++.++....+ ....++.+-|||.+.-.+|++.-|...|+=+|. .+.
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~--------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-------~d~ 426 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQRALSTATQ--------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-------SDA 426 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHHHHHhhccC--------cchhhhhhhccceeEEeccchHHHHHHHHHHhc-------cCc
Confidence 34445786667778888888777544332 122456788999999899999999988876652 222
Q ss_pred CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+.+.+|+|||.+..+-|+...|..+|+-|-..
T Consensus 427 -------~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 427 -------QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred -------chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 34778999999999999999999988776543
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.64 E-value=12 Score=35.14 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=53.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~ 360 (392)
.++.+.+..-..--....|.=++.+..++.+..++.. -.-+..|+.+..+.|+.+.|..+|+...+.-..|.+.
T Consensus 175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~ 248 (366)
T KOG2796|consen 175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL 248 (366)
T ss_pred HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence 3344443333333445566667777777766665532 2345678999999999999999999777666655333
Q ss_pred CCchHHHHHHHHH
Q 016258 361 PEEAGLEQRRLSV 373 (392)
Q Consensus 361 p~~a~~l~~~~~~ 373 (392)
...-.+.++.+++
T Consensus 249 q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 249 QGKIMVLMNSAFL 261 (366)
T ss_pred chhHHHHhhhhhh
Confidence 3333334444433
No 202
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=87.42 E-value=5.6 Score=37.05 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=78.5
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
-+++.|++..|.+.+... ....+++ .+.+..+|.+|-..|+...|...|.++.+. .+..+
T Consensus 109 ~~~~~g~~~~A~~~~rkA-------~~l~p~d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L----~~~~p-- 168 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKA-------ARLAPTD-------WEAWNLLGAALDQLGRFDEARRAYRQALEL----APNEP-- 168 (257)
T ss_pred HHHHhcchHHHHHHHHHH-------hccCCCC-------hhhhhHHHHHHHHccChhHHHHHHHHHHHh----ccCCc--
Confidence 567788888887766422 2222222 345566777777788888887777766443 33333
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
...+|||-++.-.|+++.|..++..+... ... + .....+|+.++..+|++..|...
T Consensus 169 -----~~~nNlgms~~L~gd~~~A~~lll~a~l~-------~~a------d-~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 169 -----SIANNLGMSLLLRGDLEDAETLLLPAYLS-------PAA------D-SRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred -----hhhhhHHHHHHHcCCHHHHHHHHHHHHhC-------CCC------c-hHHHHHHHHHHhhcCChHHHHhh
Confidence 26899999999999999999988776532 111 1 22457899999999998888753
No 203
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.37 E-value=9 Score=38.26 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
.--+|.+....+++++|+.+|++++++. +. ....-.++.+++.+|+.++|..+|++++.+..
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~-------P~--------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQR-------PD--------AYDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4456888889999999999999999752 22 12344699999999999999999999988653
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.27 E-value=4.1 Score=28.93 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=38.1
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHH
Q 016258 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGL 366 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~ 366 (392)
..|++++|+..|++.+.. .+.+ ....-.++.++...|++++|... ++++ ..+|++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~~A~~~-------l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-------NPDN-------PEARLLLAQCYLKQGQYDEAEEL-------LERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-------TTTS-------HHHHHHHHHHHHHTT-HHHHHHH-------HHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCHHHH
Confidence 357777888877777644 4442 23445789999999998877654 4454 556665544
Q ss_pred HH
Q 016258 367 EQ 368 (392)
Q Consensus 367 l~ 368 (392)
..
T Consensus 62 ~~ 63 (68)
T PF14559_consen 62 QQ 63 (68)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=87.15 E-value=1.7 Score=30.84 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|..+...|++++|+..|++++ ..+|++......++.++..+|+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~lg~~~~~~g~~ 47 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLLGRILYQQGRY 47 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCCH
Confidence 5677888888887777666554 56799999999999999887764
No 206
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=86.95 E-value=8.1 Score=42.17 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=64.6
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------Hh
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD------AV 310 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~------~~ 310 (392)
++..+...|+..+|+.++++... ..+..... .......|..++...|++++|+..+++.+...-. ..
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~----~~p~~~~~---~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~ 350 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFY----HPETIADL---SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSP 350 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhh----cCCCCCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCC
Confidence 45555566666777666655421 11111000 0123345555667779999999988887754210 00
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
...++. +-...+..++.++...|++++|+..|++++. ..|++..++..++.++...|
T Consensus 351 ~~~p~~-----~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~------~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 351 TSIPND-----DWLQGQSLLSQVAKYSNDLPQAEMRARELAY------NAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred CCCCCc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcC
Confidence 111110 1122344566677777777777766555443 24555555555555554443
No 207
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.75 E-value=8.2 Score=33.99 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
....+......+|+.+...|++++|+..|.++.+-- -... .+.+..-++-.+....+++..+..+..++
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--------~~~~---~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC--------TSPG---HKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--------CCHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456777899999999999999999999999866431 1111 22333334556666778999999998888
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
..+++.- ++.. .++...+|.-|..+.
T Consensus 100 ~~~~~~~----~d~~-~~nrlk~~~gL~~l~ 125 (177)
T PF10602_consen 100 ESLIEKG----GDWE-RRNRLKVYEGLANLA 125 (177)
T ss_pred HHHHhcc----chHH-HHHHHHHHHHHHHHH
Confidence 8888763 2222 344455555555443
No 208
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.70 E-value=0.25 Score=53.04 Aligned_cols=44 Identities=30% Similarity=0.892 Sum_probs=35.1
Q ss_pred CCeeccccccccc------cCceeccCCCcchHHhHHhcC------CCCCCCCCcc
Q 016258 88 GPLSCMICQALLF------ECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~------~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
+.-.|+||-.++. ...++..|.|.|-.+|+-.|+ .||+||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3567999988765 145677899999999999993 5999997654
No 209
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=0.6 Score=44.51 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI 130 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~ 130 (392)
+.-.||||+.--.++-++.--|-+||..||-.+ ..||+-+.+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 467899999997745555556999999999887 4599876543
No 210
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.61 E-value=12 Score=28.95 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=53.0
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
..+|+..|+......-+....-.... ....+..++-+++.+....|.+++|+..+++++++.++..+.. -
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~--~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~--------~ 79 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSS--SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR--------C 79 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH--------H
Confidence 45666555554444433322211111 1345666788899999999999999999999999988764332 3
Q ss_pred HHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVD 334 (392)
Q Consensus 323 la~sl~~la~~~ 334 (392)
++-.+.|+..+.
T Consensus 80 l~~al~~~~~l~ 91 (94)
T PF12862_consen 80 LAYALSWLANLL 91 (94)
T ss_pred HHHHHHHHHHHh
Confidence 555666666554
No 211
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=21 Score=34.04 Aligned_cols=100 Identities=22% Similarity=0.281 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-c--CHHHHHHHHHHHH
Q 016258 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-G--DLQAARSYYVRSL 303 (392)
Q Consensus 227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g--~l~~A~~~ye~sL 303 (392)
-|.+.+.+-++|.++...++...|+..|..+ .+|.++++++...+ +++.+.. | .-.++...|.++|
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A----~rL~g~n~~~~~g~-------aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNA----LRLAGDNPEILLGL-------AEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHH----HHhCCCCHHHHHHH-------HHHHHHhcCCcccHHHHHHHHHHH
Confidence 3455678889999998899998887777655 46778888765443 3444333 2 5557777777766
Q ss_pred HHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.. ++. -..++.-||..+...|+|.+|+..++.-+
T Consensus 221 ~~-------D~~-------~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 221 AL-------DPA-------NIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred hc-------CCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 333 24578889999999999888887655433
No 212
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=0.36 Score=49.83 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=32.1
Q ss_pred CCeecccccccccc---CceeccCCCcchHHhHHhcC--CCCCCCC
Q 016258 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGA 128 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~ 128 (392)
+.+.|+||+..|.. .|+.+-|||+.|..|+.... .|| |..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCc
Confidence 35789999877764 48999999999999998763 599 544
No 213
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=86.18 E-value=4.4 Score=43.80 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
....-.|.+.+...|.+.+|+.+|-..... ... ..+..+-++|.+|..+|.++.|++.|+.++
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl---- 476 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNR-------EGY------QNAFVWYKLARCYMELGEYEEAIEFYEKVL---- 476 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccc------cchhhhHHHHHHHHHHhhHHHHHHHHHHHH----
Confidence 345667777888888888888888766532 221 113445678888888888888888888776
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
...|++.+.+-.|++++..+|+.-
T Consensus 477 --~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 477 --ILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred --hcCCCchhhhhhHHHHHHhcCCHH
Confidence 456888999999999999888753
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.17 E-value=10 Score=31.95 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=83.4
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.|+.-+..-...|+...++..|.++.... + .-..++|+-...+.-+|+-++|++.++++|++.-..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~----P-------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--- 110 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA----P-------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--- 110 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc----c-------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---
Confidence 44444544435677788887777765432 1 122467888888888899999999999999763211
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----Hh-hcCCCchHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE-----SL-TLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e-----~l-~~~p~~a~~l~~~~~~~~~ 376 (392)
+. .-.-++-.-|.+|+.+|+.+.|..-|+.+-.+-- +| ...|..+.--++++..+..
T Consensus 111 -tr------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~q 173 (175)
T KOG4555|consen 111 -TR------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFDQ 173 (175)
T ss_pred -ch------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHHh
Confidence 11 1233456788999999999999999988876533 33 6677777666666666554
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.11 E-value=9.8 Score=36.00 Aligned_cols=94 Identities=23% Similarity=0.211 Sum_probs=67.1
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh-hcCCCch
Q 016258 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLESL-TLKPEEA 364 (392)
Q Consensus 287 ~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~i~e~l-~~~p~~a 364 (392)
...|+++.|..+|.++-.+.. .-.+.....++..+-++|.-....+ +++.|+.++++|.++++.. ..+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 356899999999998876654 1123334567777888887777778 9999999999999999883 4344444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 016258 365 GLEQRRLSVLEFLNNQLSEKPP 386 (392)
Q Consensus 365 ~~l~~~~~~~~~l~~~~~~~~~ 386 (392)
.......+++..|-+.+-+...
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~ 99 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDT 99 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCC
Confidence 4555566777777766655443
No 216
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=86.02 E-value=7.9 Score=38.20 Aligned_cols=62 Identities=23% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.+.-||-++...+.+.+|..+|+.++..+.. +...+.+|+++..+|+.+.|...+++++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS---------------ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 3445688888889999999999987754332 4467899999999999999999999999443
No 217
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.81 E-value=1.1 Score=25.54 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+.++|.++..+|+++.|+..|++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4568899999999999999999988865
No 218
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.74 E-value=5.1 Score=38.77 Aligned_cols=82 Identities=16% Similarity=0.065 Sum_probs=59.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
.+.||..+..+|-+..|...++.+|+.. .+.+++--|+.+|..+.+-+.|+..|.+. |.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~---------------~~~dTfllLskvY~ridQP~~AL~~~~~g------ld 284 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF---------------PHPDTFLLLSKVYQRIDQPERALLVIGEG------LD 284 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC---------------CchhHHHHHHHHHHHhccHHHHHHHHhhh------hh
Confidence 4678999999999999999999988642 12445666777788777777777554443 34
Q ss_pred cCCCchHHHHHHHHHHHHHHHHh
Q 016258 359 LKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
..|.+..++-..+.|++.|++|-
T Consensus 285 ~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 285 SFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred cCCchhhhhhhhHHHHHHHHhHH
Confidence 56777777777788877777664
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=85.57 E-value=3 Score=42.06 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
-|.+...+..+|..++.+|++.+|+..++.+.+. .+...+ .+.++.+++..+..+|++++|+..|++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~ae----A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL----NPNPDE----AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455566677888888999999999999887654 333332 2246899999999999999999999999996
No 220
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.55 E-value=20 Score=33.17 Aligned_cols=61 Identities=11% Similarity=-0.083 Sum_probs=43.0
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
-+......|++..|+..++.... ..+..+ ....+.-.++..++..+++++|+..|++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDN----RYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44455567888888888776533 222222 23345678999999999999999999988854
No 221
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.53 E-value=0.44 Score=40.76 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCeeccccccccccCceeccCC
Q 016258 88 GPLSCMICQALLFECSKCTPCS 109 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~ 109 (392)
++..||||++... +.|+|-|.
T Consensus 1 ed~~CpICme~PH-NAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPH-NAVLLLCS 21 (162)
T ss_pred CCccCceeccCCC-ceEEEEec
Confidence 3578999999988 77877654
No 222
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=85.47 E-value=0.77 Score=31.39 Aligned_cols=37 Identities=24% Similarity=0.648 Sum_probs=27.6
Q ss_pred eccccccc-cccCceeccCC-----CcchHHhHHhcC------CCCCCC
Q 016258 91 SCMICQAL-LFECSKCTPCS-----HVYCKACISRFK------DCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~-~~~~p~~~~C~-----h~fC~~Ci~~~~------~CP~C~ 127 (392)
.|.||++. -.+.+...||. |.+=..|+.+|. .||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48899972 12368889985 667789999993 499985
No 223
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.22 E-value=20 Score=29.66 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=58.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~-~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
...+++.....+++-.++-.|+++|.+.++.......... .+.--+.+--|||+.|+.+|+-+-.+.|++=|=+....|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 3456677777788889999999999998887433332222 222223356689999999999999999998888877777
No 224
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.99 E-value=18 Score=40.04 Aligned_cols=131 Identities=11% Similarity=0.113 Sum_probs=75.5
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-----
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR----- 307 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~----- 307 (392)
.|.-++.++..+|++.++..++++..+.- ..+. .++|+++..+... ++++|+.+|.+++...-
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~-------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~ 185 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNP-------EIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQY 185 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccH-------HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcc
Confidence 34445566667888899998888775543 4444 3688888888888 99999999999998531
Q ss_pred --------HHhhcCCCCCcchhhHHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 016258 308 --------DAVKRHSNVPSQVLDVAVSLA------KVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLS 372 (392)
Q Consensus 308 --------~~~~~~~~~~~~~~dla~sl~------~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~ 372 (392)
....-.++...-+..+-..+- ++.+++.-+=++=...+-|.+++.+++.+ +.+|.+.-.+..++.
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~ 265 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIR 265 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHH
Confidence 122223333322221111111 11122211112223334456677777777 666776666666666
Q ss_pred HHH
Q 016258 373 VLE 375 (392)
Q Consensus 373 ~~~ 375 (392)
.|-
T Consensus 266 ~y~ 268 (906)
T PRK14720 266 FYK 268 (906)
T ss_pred HHH
Confidence 554
No 225
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.46 E-value=12 Score=28.17 Aligned_cols=36 Identities=28% Similarity=0.150 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
..|..+...|.-....|+|++|+.+|+++++.+...
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 345667777777778899999999999999999884
No 226
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=1 Score=42.25 Aligned_cols=42 Identities=26% Similarity=0.706 Sum_probs=29.4
Q ss_pred eccccccccccCc----eeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258 91 SCMICQALLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 91 ~C~iC~~~~~~~p----~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
.||+|.---.-.| .+-+|+|..|.+|+...+ .||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 3777765222122 233899999999998874 49999887655
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.86 E-value=6.5 Score=36.89 Aligned_cols=92 Identities=23% Similarity=0.263 Sum_probs=62.4
Q ss_pred hhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016258 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 242 ~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~ 321 (392)
+..|++..|...|.... ..- +... ....+.-.||+.++.+|+++.|...|...++ +.+...
T Consensus 152 ~ksgdy~~A~~~F~~fi---~~Y-P~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-------~~P~s~---- 212 (262)
T COG1729 152 YKSGDYAEAEQAFQAFI---KKY-PNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVK-------DYPKSP---- 212 (262)
T ss_pred HHcCCHHHHHHHHHHHH---HcC-CCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHH-------hCCCCC----
Confidence 35677666665554432 222 2222 2345778899999999999999999988775 233221
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
-.-+.|=+||.+...+|+.++|...|++.++
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1135788999999999999988877666554
No 228
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.83 E-value=12 Score=27.67 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
|..+.+.|.-....|++++|+.+|.++++.+... ...++
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4445556666667799999999999999999997 33443
No 229
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=83.59 E-value=0.5 Score=32.50 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=20.2
Q ss_pred eeccccccccccCceeccCCCcchHHhH---H-----hcCCCCCCCCC
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACI---S-----RFKDCPLCGAD 129 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci---~-----~~~~CP~C~~~ 129 (392)
|.|||-...+..+.+...|.|.-|..=. . ..|.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999988866777789998764321 1 12789999863
No 230
>PRK14574 hmsH outer membrane protein; Provisional
Probab=83.52 E-value=12 Score=41.29 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=9.8
Q ss_pred HHHHHhccCHHHHHHHHHHHH
Q 016258 283 GDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL 303 (392)
+.++...|++++|+..|++.+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334444455554444444443
No 231
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=83.03 E-value=0.85 Score=34.24 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=21.5
Q ss_pred cCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258 107 PCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
-|.|.|=..||.+|. .||++++++.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 499999999999994 5999998654
No 232
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.76 E-value=14 Score=27.44 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
|..|-+-|.-....|++++|+.+|.++++.+... ...|+
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3444455555666799999999999999999997 44443
No 233
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=82.54 E-value=0.33 Score=35.68 Aligned_cols=39 Identities=36% Similarity=0.670 Sum_probs=22.6
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC---CCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
++.||.|...|.-.. ++.+|..|-..+. .||.|..++..
T Consensus 1 e~~CP~C~~~L~~~~-----~~~~C~~C~~~~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG-----GHYHCEACQKDYKKEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEET-----TEEEETTT--EEEEEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEeC-----CEEECccccccceecccCCCcccHHHH
Confidence 468999998866111 8889999998874 49999986654
No 234
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.53 E-value=0.69 Score=45.04 Aligned_cols=41 Identities=22% Similarity=0.691 Sum_probs=29.5
Q ss_pred eeccccccccccCc---eeccCCCcchHHhHHhcC-------CCCCCCCCc
Q 016258 90 LSCMICQALLFECS---KCTPCSHVYCKACISRFK-------DCPLCGADI 130 (392)
Q Consensus 90 ~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~ 130 (392)
-.|.||.+.+.... .+-.|||.|=..|+.+|+ .||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 47999977644321 222499999999999993 499998443
No 235
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=81.92 E-value=4.2 Score=42.25 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
..-++.+....|++++|...|++++++. + . +..+..+|.++...|+.++|++.|++|+.+-=...
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~-------p-------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE-------M-------S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-------C-------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3344556666799999999999999775 1 1 44678899999999999999999999875421110
Q ss_pred --cCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258 359 --LKPEEAGLEQRRLSVLEFLNNQLSEK 384 (392)
Q Consensus 359 --~~p~~a~~l~~~~~~~~~l~~~~~~~ 384 (392)
-=-++..+..++..+..+|.+.+.+.
T Consensus 488 t~~~~~~~~f~~~~~~~~~~~~~~~~~~ 515 (517)
T PRK10153 488 TLYWIENLVFQTSVETVVPYLYRFLAPS 515 (517)
T ss_pred hHHHHHhccccccHHHHHHHHHhccCcc
Confidence 00123445667788888888877653
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.91 E-value=2.6 Score=25.12 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
++=++|.++..+|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 355789999999999999988887765
No 237
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.81 E-value=17 Score=26.88 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
|..+-..|.-....|++++|+.+|.++++.+... ...|+
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3344445555666799999999999999999997 44444
No 238
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=81.72 E-value=4.6 Score=44.52 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR--- 353 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i--- 353 (392)
.++-.++..+..+|+.++|...|++.|+.- ++ -+..|+++|-.|... ++++|+.++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~-------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-------RD-------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cc-------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 366778888888899999999999998763 33 366789999999888 999999988777654
Q ss_pred ----------HHHh-hcCCCchHH
Q 016258 354 ----------LESL-TLKPEEAGL 366 (392)
Q Consensus 354 ----------~e~l-~~~p~~a~~ 366 (392)
|+++ ...|++...
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchH
Confidence 4555 677777665
No 239
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.59 E-value=0.4 Score=35.64 Aligned_cols=42 Identities=24% Similarity=0.605 Sum_probs=29.4
Q ss_pred eeccccccccccCceec-cCCCcchHHhHHhcC-------CCCCCCCCcc
Q 016258 90 LSCMICQALLFECSKCT-PCSHVYCKACISRFK-------DCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-------~CP~C~~~~~ 131 (392)
-.||-|.-.=-+.|.++ -|.|.|=..||..|. .||.||+.+.
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45666655433335544 499999999999994 3999998654
No 240
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.28 E-value=3.6 Score=29.72 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 331 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 331 a~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
..++...+++++|+..++.++.+ +|++..+...++.++..+|+.-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~ 46 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYE 46 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHH
Confidence 46777788888877766666554 7888888888888888877653
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.15 E-value=9.8 Score=34.39 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
..-+..++.-|+-.+.-|+|.+|...|..+|++.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c 125 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESC 125 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC
Confidence 4455677888888889999999999999999865
No 242
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=80.38 E-value=72 Score=32.54 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=52.0
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
+.+.+++....++.++|...++.+. .+.+...-+ .-++++.+...|+.++|+. +........
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal----~l~P~~~~l-------~~~~a~all~~g~~~eai~-------~L~~~~~~~ 404 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKAL----ALDPNSPLL-------QLNLAQALLKGGKPQEAIR-------ILNRYLFND 404 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH----hcCCCccHH-------HHHHHHHHHhcCChHHHHH-------HHHHHhhcC
Confidence 4455666656777788877766553 333333323 3456667777777775554 444455566
Q ss_pred CCCCcchhhHHHHHH----------HHHHHHHhcCCHHHHHHHHHHHH
Q 016258 314 SNVPSQVLDVAVSLA----------KVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 314 ~~~~~~~~dla~sl~----------~la~~~~~~g~~~~A~~~~~eal 351 (392)
++++..-.-+|.... ..++.+...|++++|+.++..+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 665433222222222 23334444455555555444433
No 243
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=1.2 Score=43.63 Aligned_cols=41 Identities=22% Similarity=0.492 Sum_probs=32.3
Q ss_pred Ceeccccccccc--cCceeccCCCcchHHhHHhc-------CCCCCCCCC
Q 016258 89 PLSCMICQALLF--ECSKCTPCSHVYCKACISRF-------KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~ 129 (392)
.|.|||=.+... ++|+.+.|||..|+.-+.+. +.||.|...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 488997655433 37999999999999999876 359999753
No 244
>PLN03077 Protein ECB2; Provisional
Probab=79.59 E-value=43 Score=36.97 Aligned_cols=85 Identities=18% Similarity=0.128 Sum_probs=39.7
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
..|+..+|+.++++..+ ..+.+... +.+.+-......|.+++|..+|+++.+.. .-.+ +
T Consensus 566 ~~G~~~~A~~lf~~M~~--~g~~Pd~~--------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P-------~ 624 (857)
T PLN03077 566 AHGKGSMAVELFNRMVE--SGVNPDEV--------TFISLLCACSRSGMVTQGLEYFHSMEEKY----SITP-------N 624 (857)
T ss_pred HcCCHHHHHHHHHHHHH--cCCCCCcc--------cHHHHHHHHhhcChHHHHHHHHHHHHHHh----CCCC-------c
Confidence 45555666666655321 12222221 12222233444566666666666554221 1111 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
...++-+.+++.+.|++++|.+++++
T Consensus 625 -~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 625 -LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 12445555666666666666655554
No 245
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=79.18 E-value=12 Score=31.35 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hHHHHHHHHHHHHHHHHhhc
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~-a~~l~~~~~~~~~l~~~~~~ 383 (392)
+|=+...-..|......+++.++.+.+.+++.|+.+| ..+.+. ..+-.++..+|.++-++|-+
T Consensus 28 yeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~ 93 (132)
T COG1516 28 YEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVRRLVQ 93 (132)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHHHHHH
Confidence 4544444456666667799999999999999999999 444554 55788999999999888754
No 246
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=78.99 E-value=13 Score=35.89 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
+...+..|..+|..+|+.+..+.++..+.+....
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 3445677888999999988888887777666544
No 247
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.77 E-value=0.96 Score=45.40 Aligned_cols=44 Identities=25% Similarity=0.714 Sum_probs=32.7
Q ss_pred Ceecccccccccc----------------CceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258 89 PLSCMICQALLFE----------------CSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~----------------~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
..-|+||...+.- .-..+||-|.|-..|+.+|. .||.||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4668888764221 13456999999999999994 59999987753
No 248
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.27 E-value=4 Score=22.91 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
....+|.++...+++++|...|++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4567899999999999999999988864
No 249
>PLN03218 maturation of RBCL 1; Provisional
Probab=77.31 E-value=71 Score=36.42 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
+++.|...+...|++++|+++|++.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4666667777777777777666654
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.30 E-value=64 Score=30.22 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+.+-.+-+++...+=.|-..||++.-+.++.. .+.++++-+++-..+|..-|..+.|...+++|-++++++
T Consensus 53 cLlkA~~~yEnnrslfhAAKayEqaamLake~~--------klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv 124 (308)
T KOG1585|consen 53 CLLKASKGYENNRSLFHAAKAYEQAAMLAKELS--------KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENV 124 (308)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC
Confidence 444445555555544455556666665554431 233566667777788999999999999999999999976
Q ss_pred hcCCCchH--HHHHHHHHHHHHHHHh
Q 016258 358 TLKPEEAG--LEQRRLSVLEFLNNQL 381 (392)
Q Consensus 358 ~~~p~~a~--~l~~~~~~~~~l~~~~ 381 (392)
+|+++. +.+.++.+.+.-+.++
T Consensus 125 --~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 125 --KPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred --CHHHHHHHHHHHHHHHhccchHHH
Confidence 666655 4555555555444443
No 251
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.29 E-value=3.2 Score=37.51 Aligned_cols=42 Identities=24% Similarity=0.614 Sum_probs=33.0
Q ss_pred eecccccccccc-CceeccCCCcchHHhHHhc------------CCCCCCCCCcc
Q 016258 90 LSCMICQALLFE-CSKCTPCSHVYCKACISRF------------KDCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~------------~~CP~C~~~~~ 131 (392)
--|.+|.-.|.. +-+.+-|-|.|=+.|+..| ..||.|...+-
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 458888776653 4677889999999999988 25999987653
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=77.26 E-value=6.1 Score=25.80 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.+..++..+...|++++|+..|++.|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999998864
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.19 E-value=1.4 Score=47.15 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=36.1
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc-CCCCCCCCC
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGAD 129 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~ 129 (392)
+.-+|..|...|.-+-|...|||+|=..|+.+. ..||.|+..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhccCcccCCccchh
Confidence 456899999998878888999999999999865 579999863
No 254
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.16 E-value=27 Score=32.67 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=53.4
Q ss_pred HHHHHhccCHHHHHHHHHHHHH-------HH--HH-HhhcCCCCCcchhhHHH----------HHHHHHHHHHhcCCHHH
Q 016258 283 GDLKYYGGDLQAARSYYVRSLN-------VR--RD-AVKRHSNVPSQVLDVAV----------SLAKVADVDRSIGNEDV 342 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~-------i~--~~-~~~~~~~~~~~~~dla~----------sl~~la~~~~~~g~~~~ 342 (392)
+.+.+..|.+++|+++|+.-|+ ++ +. +......+.+.+.++.. ....++++|...|.+++
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence 4455666788888888887665 11 11 11222333333323222 23347788888787777
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 343 AVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 343 A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
|.=-|+|.+ -..|-+..+-.+++.++..+|-
T Consensus 173 A~fClEE~l------l~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 173 AAFCLEELL------LIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHH------HcCCCcHHHHHHHHHHHHHHhh
Confidence 765555443 4457777888888888776653
No 255
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=76.77 E-value=16 Score=33.82 Aligned_cols=82 Identities=12% Similarity=-0.079 Sum_probs=55.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCC
Q 016258 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKP 361 (392)
Q Consensus 282 lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p 361 (392)
.+......|++++|+..|++.++. .+... -.....-++|.++..+++++.|+..|++.++.. .++|
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~ 103 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR-------YPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHP 103 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------CCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCC
Confidence 344556678999999999887753 22211 122234589999999999999998888776543 4566
Q ss_pred CchHHHHHHHHHHHHH
Q 016258 362 EEAGLEQRRLSVLEFL 377 (392)
Q Consensus 362 ~~a~~l~~~~~~~~~l 377 (392)
.....+..++.+...+
T Consensus 104 ~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 104 NIDYVLYMRGLTNMAL 119 (243)
T ss_pred chHHHHHHHHHhhhhc
Confidence 6666666666654333
No 256
>PRK14574 hmsH outer membrane protein; Provisional
Probab=76.38 E-value=39 Score=37.26 Aligned_cols=157 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHH----------HHHHhcCCcH---HHHHHHH-------HHHhhhhhhhhhhcchhH
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIR----------DQIERMGNTS---ELCSQLG-------AVLGMLGDCCRAMGDADA 249 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~----------~~l~~~~~~~---~~C~~h~-------~~L~~~c~~C~~~gdhh~ 249 (392)
++..++.|++..|...|..+...-. ..+-..+... ..|...- ..+..++.....+|++..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4688999999999888854432211 1111111111 1232221 122223556766788888
Q ss_pred HHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHH
Q 016258 250 AVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK 329 (392)
Q Consensus 250 a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~ 329 (392)
|+.++++.. ++.+.++++.. -+..++...++.++|+..+++.+.. .+.. ... --
T Consensus 121 Aiely~kaL----~~dP~n~~~l~-------gLa~~y~~~~q~~eAl~~l~~l~~~-------dp~~-------~~~-l~ 174 (822)
T PRK14574 121 ALALWQSSL----KKDPTNPDLIS-------GMIMTQADAGRGGVVLKQATELAER-------DPTV-------QNY-MT 174 (822)
T ss_pred HHHHHHHHH----hhCCCCHHHHH-------HHHHHHhhcCCHHHHHHHHHHhccc-------Ccch-------HHH-HH
Confidence 888876653 33444454432 3455565667777777766665433 3321 111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
++-++..+++..+ ++..++++ ..+|++..+...+..++..+|.
T Consensus 175 layL~~~~~~~~~-------AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 175 LSYLNRATDRNYD-------ALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHhcchHHH-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2333433444433 44555555 6678888777776666665553
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.12 E-value=19 Score=33.87 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=58.8
Q ss_pred HhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHH
Q 016258 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGL 366 (392)
Q Consensus 287 ~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~ 366 (392)
+..|+|..|...|..-++ ..+... -..+..=|||..+..+|+++.|...|..+.. ....+|-..+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~-------~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda 217 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIK-------KYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA 217 (262)
T ss_pred HHcCCHHHHHHHHHHHHH-------cCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence 345778888887776663 344322 2345677999999999999999988766554 55566777778
Q ss_pred HHHHHHHHHHHHHH
Q 016258 367 EQRRLSVLEFLNNQ 380 (392)
Q Consensus 367 l~~~~~~~~~l~~~ 380 (392)
+-.++.++..|+|.
T Consensus 218 llKlg~~~~~l~~~ 231 (262)
T COG1729 218 LLKLGVSLGRLGNT 231 (262)
T ss_pred HHHHHHHHHHhcCH
Confidence 88899999888875
No 258
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.09 E-value=1.2 Score=46.83 Aligned_cols=43 Identities=37% Similarity=0.834 Sum_probs=37.4
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc-------CCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF-------KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~~~~ 132 (392)
.+.|+||....+ .|+.+.|-|.||..|+... ..||+|+..+..
T Consensus 21 ~lEc~ic~~~~~-~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVK-EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEee-ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 589999999988 8999999999999999765 249999977665
No 259
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=75.94 E-value=29 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
..|-+-|.-....|++++|+.+|.++++.+...
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 334444555556699999999999999999997
No 260
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.45 E-value=2.3 Score=42.35 Aligned_cols=58 Identities=22% Similarity=0.553 Sum_probs=36.4
Q ss_pred CeeccccccccccC---ceeccCCCcchHHhHHhcC----------CCCC--CCCCccc-----chhhhHHHHHHHHHH
Q 016258 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----------DCPL--CGADIEK-----IEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----------~CP~--C~~~~~~-----~~~n~~l~~~v~~~~ 147 (392)
...|.||..-.... -.+..|+|.||..|+.++. .||. |...++. +.++ .+.++.+++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~ 223 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL 223 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence 57899999332312 2356799999999998873 2766 6665554 3333 4445555544
No 261
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.31 E-value=41 Score=35.87 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
++..-..+..-+.++-..+.+++=|+.....++.....+. -++..+..|.. +...+.|.+|+..|+..
T Consensus 91 iks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~-----------MLv~~vesL~~-l~~kr~y~e~a~~lqai 158 (793)
T KOG2180|consen 91 IKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLH-----------MLVTGVESLNA-LLSKRSYGEAASPLQAI 158 (793)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHH-HHhhccHHHHHhHHHHH
Confidence 3333333444444555555555556655555555444332 23444444443 34458999999999999
Q ss_pred HHHHHHh---hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 351 IKRLESL---TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 351 l~i~e~l---~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
+.+++.. ..-|.++.+...+..+-..+..++.+
T Consensus 159 ~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~ 194 (793)
T KOG2180|consen 159 LQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQ 194 (793)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999977 55578888888888887777776654
No 262
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.16 E-value=5.8 Score=37.90 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
|..+.+.|=+..+-|++++|+..|++|+..
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhh
Confidence 556667777777778888888777777653
No 263
>PHA03096 p28-like protein; Provisional
Probab=75.10 E-value=1.6 Score=41.53 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=24.5
Q ss_pred eeccccccccccC-------ceeccCCCcchHHhHHhc
Q 016258 90 LSCMICQALLFEC-------SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 ~~C~iC~~~~~~~-------p~~~~C~h~fC~~Ci~~~ 120 (392)
-.|.||++..... .....|.|.||..|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 5699999876633 234479999999999999
No 264
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=74.85 E-value=21 Score=40.41 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
+++..++.+..+-.+...+++...|+.+...+..+.+..-+.+.. . -.....++.......+....|...+.+++.+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-~--t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-N--TKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-H--HHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 456666666666677767788877777766665554444443321 1 1224556666666667788888888888877
Q ss_pred HHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
......... ...+.+..+++.++..++.++.|+.+.+.|+.+-+++
T Consensus 1045 ~~Ls~ge~h------P~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1045 KLLSSGEDH------PPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred hccccCCCC------CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 665555422 2567777899999999999999999999999988888
No 265
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=74.84 E-value=23 Score=28.96 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCC-chHHHHHHHHHHHHHHHHhhc
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPE-EAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~-~a~~l~~~~~~~~~l~~~~~~ 383 (392)
+.+......|+++.+.....++..|+..| ..+++ -..+-.++..+|.|+..++.+
T Consensus 34 ~~a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~ 91 (122)
T PF02561_consen 34 KQAKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQ 91 (122)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34444556689999999999999999999 55555 356889999999999988865
No 266
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=74.74 E-value=36 Score=34.60 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=62.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL- 357 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l- 357 (392)
..-.++|+...++..+|.+.|++++.. .+.. ..-.-++|+++...|+.+ +++.++...
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l-------~P~~-------~~l~~~~a~all~~g~~~-------eai~~L~~~~ 401 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALAL-------DPNS-------PLLQLNLAQALLKGGKPQ-------EAIRILNRYL 401 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCc-------cHHHHHHHHHHHhcCChH-------HHHHHHHHHh
Confidence 445577888889999999988888753 3332 112236889999999987 455566665
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhh
Q 016258 358 TLKPEEAGLEQRRLSVLEFLNNQLS 382 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~~~~~ 382 (392)
.++|+++..-+.++-.|..+|+...
T Consensus 402 ~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 402 FNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred hcCCCCchHHHHHHHHHHHhCchHH
Confidence 8889999999999999999998754
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.27 E-value=35 Score=31.00 Aligned_cols=84 Identities=20% Similarity=0.079 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hcCC----Cc
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL---TLKP----EE 363 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l---~~~p----~~ 363 (392)
.+++|+..|.-+|-...... ..+ ..+|...-++|=+++.+|+.+....++++|+...++. +..| +.
T Consensus 92 t~~~ai~~YkLAll~~~~~~-~~~------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKK-EKP------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCH------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 57778887777776543322 111 1567677788999999999999999999999999997 2222 33
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 016258 364 AGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 364 a~~l~~~~~~~~~l~~~~ 381 (392)
..++..+|.+...+|+.-
T Consensus 165 ~~l~YLigeL~rrlg~~~ 182 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYD 182 (214)
T ss_pred HHHHHHHHHHHHHhCCHH
Confidence 567788888888888754
No 268
>PRK05685 fliS flagellar protein FliS; Validated
Probab=73.78 E-value=27 Score=29.10 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hHHHHHHHHHHHHHHHHhhc
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~-a~~l~~~~~~~~~l~~~~~~ 383 (392)
+.+......|+++++-....++..|+..| ..+.+. ..+-.++.++|.|+...+.+
T Consensus 40 ~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~L~~ 97 (132)
T PRK05685 40 AQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIRRLLE 97 (132)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHHHHH
Confidence 34445556699999999999999999999 455543 47889999999999988875
No 269
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.68 E-value=6.6 Score=23.24 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
++=++|.++...|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455788889889999999999988775
No 270
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.52 E-value=1.7 Score=39.87 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=28.1
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
.-.|++|+...+ +|++.+=||.||+.||.++
T Consensus 43 FdcCsLtLqPc~-dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 43 FDCCSLTLQPCR-DPVITPDGYLFDREAILEY 73 (303)
T ss_pred cceeeeeccccc-CCccCCCCeeeeHHHHHHH
Confidence 456899999988 9999999999999999776
No 271
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=73.35 E-value=35 Score=30.61 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=32.1
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL 303 (392)
++..-...|+||++++.|+++. .-+...++.+. -.+..-...+++..+|....+...
T Consensus 95 La~al~elGr~~EA~~hy~qal---sG~fA~d~a~l-------LglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQAL---SGIFAHDAAML-------LGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHh---ccccCCCHHHH-------HHHHHHHHhhccHHHHHHHHHHHh
Confidence 3443347899999999998763 33444444332 223334445556666655554433
No 272
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=73.00 E-value=16 Score=34.90 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSN-VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~-~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
++..|+.-|+++.++.+..+=...+ .++++.. |. .-++..+++++++..||+.|
T Consensus 177 elrqA~eKfEESkE~aE~sM~nlle~d~eqvsq-------L~------~Li~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 177 ELRQALEKFEESKELAEDSMFNLLENDVEQVSQ-------LS------ALIQAQLDFHRQSTQILQEL 231 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-------HH------HHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888876543311111 1111111 11 22356889999999999998
No 273
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=43 Score=35.00 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHhccCHHHHHHHHHHHHH---------HHHH-----------HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHH
Q 016258 283 GDLKYYGGDLQAARSYYVRSLN---------VRRD-----------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~---------i~~~-----------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
+.+.|.+|+|++|...|+.-++ ++.. ..+..++..+.-. ..+=|.+-++...|+|.+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy---el~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY---ELLYNTACILIENGKYNQ 193 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH---HHHHHHHHHHHhcccHHH
Confidence 4466778889999988887643 1111 1222222221111 234577888999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 016258 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~eal~i~e~l 357 (392)
|++.++.|+.+.++-
T Consensus 194 A~elL~kA~~~~~e~ 208 (652)
T KOG2376|consen 194 AIELLEKALRICREK 208 (652)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998886
No 274
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=70.65 E-value=78 Score=28.19 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
.+...+......|++..|+..++..... . +..+ ....+.-.++..++..|++.+|+..|++-++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~---~-P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR---Y-PNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---C-CCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555566788999999888765433 2 2222 1234566889999999999999998888774
No 275
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=70.58 E-value=1 Score=42.44 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=24.7
Q ss_pred eeccccccccccCc--eeccCCCcchHHhHHhc
Q 016258 90 LSCMICQALLFECS--KCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 ~~C~iC~~~~~~~p--~~~~C~h~fC~~Ci~~~ 120 (392)
-.|.||+-=|.+.+ ..++|-|-|=..|+.++
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 56888887776554 67899999988998776
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.26 E-value=29 Score=26.34 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=42.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
...+.++|+..+.++|+... +.. +.-..|..+..++...|.|...+.+--+.+++-+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~-------~~~----~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKIT-------DRE----DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred ccchHHHHHHHHHHHHhhcC-------ChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456666666666665433 211 444567889999999999999999988888888877
No 277
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.20 E-value=43 Score=25.02 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
..+-..|.-....|+|++|+.+|.+++..+... ...++
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 344445555556699999999999999999996 44444
No 278
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=69.68 E-value=1.4 Score=49.22 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=38.6
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+...|.||++++.+...+.-|||.+|..|+..| ..||.|......
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 567999999999988999999999999999998 469999754433
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.50 E-value=21 Score=34.91 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHH--------HHh----hcCCCCCcchhhHHHHHHH-HHHHHHhcCCHHHHHH
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRR--------DAV----KRHSNVPSQVLDVAVSLAK-VADVDRSIGNEDVAVD 345 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~--------~~~----~~~~~~~~~~~dla~sl~~-la~~~~~~g~~~~A~~ 345 (392)
+.+-|+-+..+|.|++|++.|.+++.+.- ++. -+.-...+.-...|..|+. .-.+|.+.|....++.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46779999999999999999999886421 000 0000111122344555553 2345666665556666
Q ss_pred HHHHHHHHHHHh-hcCCCchHHHHHHHHHH
Q 016258 346 GFQEAIKRLESL-TLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 346 ~~~eal~i~e~l-~~~p~~a~~l~~~~~~~ 374 (392)
...+|-+-.+.+ ...|....|..-++.+-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 666666666665 56677555544444443
No 280
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=69.44 E-value=21 Score=40.45 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
++..+...+.-|..+++..|++++|+.+-.++.-+.++....... +.+..+.+++......++...|+..+..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~------~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP------NTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH------HHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 455667778888899999999999999888888888777766654 44667778888777888888899888888
Q ss_pred HHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 351 IKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 351 l~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+.++--. +.||+-+.+-.+++.+++.+.++
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 8877666 67899888878888886665543
No 281
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=68.41 E-value=2.5 Score=40.50 Aligned_cols=42 Identities=21% Similarity=0.583 Sum_probs=29.6
Q ss_pred ecccccccccc---CceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258 91 SCMICQALLFE---CSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 91 ~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
.||+|.+.+-. .-+--+||-..|+.|+.... .||.||..+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 39999886432 12334688888999986653 49999987654
No 282
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.16 E-value=2.3 Score=38.52 Aligned_cols=39 Identities=26% Similarity=0.684 Sum_probs=32.5
Q ss_pred ccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCcc
Q 016258 92 CMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIE 131 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~ 131 (392)
|-.|..--. ...++||.|. +|..|-.....||.|+....
T Consensus 161 Cr~C~~~~~-~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREA-TVLLLPCRHLCLCGICDESLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCc-eEEeecccceEecccccccCccCCCCcChhh
Confidence 999999866 7899999965 59999877778999987544
No 283
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=67.85 E-value=8.4 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~ 344 (392)
-+..+.++|.++...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3678899999999999999986
No 284
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.62 E-value=45 Score=31.22 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HhhcCCCCCcchh-h--HHHHHHHHHHHHHhcCCHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRD-AVKRHSNVPSQVL-D--VAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~-~~~~~~~~~~~~~-d--la~sl~~la~~~~~~g~~~~A~~ 345 (392)
.+..-|+-.+..|+|.+|.+.|..++...+. .+++.+-.++|+- | +.--|-|..+.+...|+|-++++
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 4556678888999999999999999986655 4566777676662 2 22334456666666666555444
No 285
>PLN02789 farnesyltranstransferase
Probab=67.37 E-value=83 Score=30.51 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
....+.+-+...+|.+++|+++++++++
T Consensus 143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 143 HAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3566777788888888888888777765
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.13 E-value=24 Score=27.35 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~ 347 (392)
..-.++..+...|+++.|++.+
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~L 45 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQL 45 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
Confidence 3445777888889988888765
No 287
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=67.11 E-value=67 Score=30.60 Aligned_cols=47 Identities=26% Similarity=0.221 Sum_probs=31.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 016258 336 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLS 382 (392)
Q Consensus 336 ~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~ 382 (392)
..|+|..|++...+...+++.+..-.-...+...+...+..+..++.
T Consensus 139 ~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld 185 (291)
T PF10475_consen 139 EEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLD 185 (291)
T ss_pred hcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHH
Confidence 44999999999999999988763333344455555555555555543
No 288
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=66.90 E-value=10 Score=40.89 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=32.3
Q ss_pred CCeeccccccccccCcee---ccCCCcchHHhHHhc-----------CCCCCCCCC
Q 016258 88 GPLSCMICQALLFECSKC---TPCSHVYCKACISRF-----------KDCPLCGAD 129 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~---~~C~h~fC~~Ci~~~-----------~~CP~C~~~ 129 (392)
..+.|.||.+.+...--+ ..|-|.|=..||..| |.||.|...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 468999999986632222 347799999999999 779999843
No 289
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=66.40 E-value=1.2e+02 Score=31.52 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL---TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l---~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
+...++.|+.....|.+-+--+++++.-.+.+ ..+| +.-....+.||+|.-..+.+
T Consensus 397 TRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre~p--~vqeKK~s~IWqFFSrLfss 455 (832)
T KOG2077|consen 397 TRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENP--AVQEKKRSSIWQFFSRLFSS 455 (832)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcCc--hhhhhccccHHHHHHHHhcC
Confidence 34467788888888988888889998887777 3344 56678899999999888776
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.72 E-value=82 Score=28.68 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=65.4
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.|+.=|.--+.-|++..|..-|..+.++-..+.. ...+..+.+-+-....++.++.|+....++|++--
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~------e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p----- 165 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST------EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP----- 165 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-----
Confidence 4555565556788888888777777665444332 23344555666666677888888888888876521
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.-...|..-|.+|+.+..++.|++-|.+.+++
T Consensus 166 ---------ty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 166 ---------TYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ---------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 11223456678888888888888877766554
No 291
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=65.45 E-value=1.1e+02 Score=30.22 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF-----QEAIK 352 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~-----~eal~ 352 (392)
+.-.-|.+...+|+|++|...|.+.|+. .+.+. ..-...++|+.+.+.....+.++.++ +.++.
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~-------~~s~~----~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQH-------EPSNG----LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhc-------CCCcc----hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 3344477888899999999999887753 22111 01111222332222222222233222 44555
Q ss_pred HHHHh-hcCCCchHHHHHHHHHHHHHH
Q 016258 353 RLESL-TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 353 i~e~l-~~~p~~a~~l~~~~~~~~~l~ 378 (392)
++..+ +..|=++.+...++..|-.-|
T Consensus 177 ~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 177 MITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 55555 666778888777777765443
No 292
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.62 E-value=33 Score=36.86 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=54.1
Q ss_pred cchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc-----CCCCCcc
Q 016258 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR-----HSNVPSQ 319 (392)
Q Consensus 245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~-----~~~~~~~ 319 (392)
.+..+++.+|..-..+...+.-..-.....+-..+...|.-..++|+++.|+..|-++--+.+.+... .+. .-.
T Consensus 675 ~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~k-ai~ 753 (1636)
T KOG3616|consen 675 HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKK-AIS 753 (1636)
T ss_pred hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhh-hHh
Confidence 33356666665443222221111111233445567778888899999999999887754433221111 110 000
Q ss_pred hhh------HHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 320 VLD------VAV-SLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 320 ~~d------la~-sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
+.| ++. -+..+++-|.+.|+++.|.++|.+
T Consensus 754 ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 754 ILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 000 111 123467778888888888776644
No 293
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=87 Score=30.93 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=39.2
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~s 302 (392)
.--|++.+.+.+||+.+|...|+...+ + ..-..+ ..-+|+-.+..+|.|.+|.+.-+++
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~-~---~~~~~e-------l~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMN-K---DDAPAE-------LGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhc-c---CCCCcc-------cchhHHHHHHHHHHHHHHHHHHhhC
Confidence 334777777789999888877765432 1 111112 2346777888899999998876664
No 294
>PLN03218 maturation of RBCL 1; Provisional
Probab=64.23 E-value=1.5e+02 Score=33.76 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
+++.+.+.+...|++++|..+|++.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4555666666677777666666553
No 295
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.07 E-value=1.4e+02 Score=30.58 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
+-+++.+..|+...|+..++.+...+.+. .+.-....=+++..+..+.+|++|..+|...++......
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk----- 339 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEW-------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK----- 339 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhH-------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH-----
Confidence 34467777788888888887664322222 222223455677777778899999888888776443321
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHH
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNE-------DVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLS 372 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~-------~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~ 372 (392)
+.-.=-.|.++..+|+. ++|.++|.++-.+..+. ..-|-+..+.++...
T Consensus 340 --------a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~ 397 (468)
T PF10300_consen 340 --------AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQK 397 (468)
T ss_pred --------HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHH
Confidence 11111244556666666 78888888888888775 444666666665554
No 296
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=63.34 E-value=63 Score=26.63 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCC-chHHHHHHHHHHHHHHHHhhc
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPE-EAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~-~a~~l~~~~~~~~~l~~~~~~ 383 (392)
+.+......|+++++-....++..|+..| ..+.+ -..+-.+|..+|.|+...+.+
T Consensus 36 ~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~~L~~ 93 (124)
T TIGR00208 36 RLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYRRLVQ 93 (124)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 34444455599999999999999999999 44443 357889999999999988865
No 297
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=63.18 E-value=4.5 Score=32.00 Aligned_cols=23 Identities=39% Similarity=0.869 Sum_probs=19.8
Q ss_pred cCCCcchHHhHHhcC----CCCCCCCC
Q 016258 107 PCSHVYCKACISRFK----DCPLCGAD 129 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----~CP~C~~~ 129 (392)
.|-|.|=..||.+|. .||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999993 59999864
No 298
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=62.57 E-value=3.4 Score=34.53 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=25.6
Q ss_pred Ceecccccccccc--CceeccCC------CcchHHhHHhc
Q 016258 89 PLSCMICQALLFE--CSKCTPCS------HVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~--~p~~~~C~------h~fC~~Ci~~~ 120 (392)
...|.||++.+.+ -.+.++|+ |.||..|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 5889999999875 34555665 67899999999
No 299
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=61.16 E-value=26 Score=33.44 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHH
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRR 370 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~ 370 (392)
.+++|.-.|++. .++.+.. ...++-++.+...+|++++|.+.+++++ ..+|.+...+.|+
T Consensus 182 ~~~~A~y~f~El-------~~~~~~t-------~~~lng~A~~~l~~~~~~eAe~~L~~al------~~~~~~~d~LaNl 241 (290)
T PF04733_consen 182 KYQDAFYIFEEL-------SDKFGST-------PKLLNGLAVCHLQLGHYEEAEELLEEAL------EKDPNDPDTLANL 241 (290)
T ss_dssp CCCHHHHHHHHH-------HCCS--S-------HHHHHHHHHHHHHCT-HHHHHHHHHHHC------CC-CCHHHHHHHH
T ss_pred hHHHHHHHHHHH-------HhccCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH------HhccCCHHHHHHH
Confidence 577777777663 2332221 3457788899999999999998877754 5678889999999
Q ss_pred HHHHHHHHHH
Q 016258 371 LSVLEFLNNQ 380 (392)
Q Consensus 371 ~~~~~~l~~~ 380 (392)
..+..++|+.
T Consensus 242 iv~~~~~gk~ 251 (290)
T PF04733_consen 242 IVCSLHLGKP 251 (290)
T ss_dssp HHHHHHTT-T
T ss_pred HHHHHHhCCC
Confidence 9888888875
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.10 E-value=11 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
....+|.++..+|+.++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345789999999999999988763
No 301
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=60.80 E-value=1.5e+02 Score=30.84 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH--H----
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV--R---- 306 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i--~---- 306 (392)
.+.++.+.+...|++..|+.+.+.+.++ .+...++.... +.|+...|++.+|...++.+-.+ .
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~K-------arilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTK-------ARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 4455566666678888888777765433 34444443333 44555566666666655554431 0
Q ss_pred ---------------------HHHhhcCCCCCcchhh--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258 307 ---------------------RDAVKRHSNVPSQVLD--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 307 ---------------------~~~~~~~~~~~~~~~d--la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~ 360 (392)
.............+.+ ...-+...|..+.++|++-.|+..|...+++......+
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D 341 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED 341 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0011111122222332 22234468899999999999999999999999987433
No 302
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.64 E-value=1.2e+02 Score=28.58 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=59.7
Q ss_pred hhhcchhHHHhHHHHHHHHHHhCCC----CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 242 RAMGDADAAVAYFADSVEFLMKLPM----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 242 ~~~gdhh~a~~~~e~~~~~~~~L~~----~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
+..|++.+|..-|.++...+.+|.- -.++|+.. ...+.-|+-+.-+---.+..|-+.++.--+++...+.++
T Consensus 189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eL----dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 189 FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLEL----DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH----HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 4788888888888888666655433 34555432 112222222222222222333355555555666666554
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKPPE 387 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~~~~ 387 (392)
..++--| .+....=+..+|..-|+.+| +.+|..+.. ++.-+-.+-+++++++.|
T Consensus 265 KA~frRa-------kAhaa~Wn~~eA~~D~~~vL------~ldpslasv---VsrElr~le~r~~ek~~e 318 (329)
T KOG0545|consen 265 KAYFRRA-------KAHAAVWNEAEAKADLQKVL------ELDPSLASV---VSRELRLLENRMAEKQEE 318 (329)
T ss_pred HHHHHHH-------HHHHhhcCHHHHHHHHHHHH------hcChhhHHH---HHHHHHHHHHHHHHhhhH
Confidence 3333322 22222222334443333332 555654443 333344556666666654
No 303
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=60.17 E-value=91 Score=31.26 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.|...+..+...++++.|+...+++
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555555555554444443333
No 304
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.86 E-value=15 Score=37.53 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=75.8
Q ss_pred hhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHHHHhhcCCCCCc
Q 016258 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN-VRRDAVKRHSNVPS 318 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~-i~~~~~~~~~~~~~ 318 (392)
..|.+|+|..|+.+.-.+.+....=+..-+++..- ...|++|-|.+.+|-|+.+..+|.++|+ .-.++.........
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~c--if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSC--IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhh--eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 55688888777776655555544433334443332 3569999999999999999999999996 33333222111110
Q ss_pred -chh--hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 319 -QVL--DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 319 -~~~--dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
-+. .--..+-|.|..|.-+|+--.|.+-|.++...+.+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 010 01123568899999999999999999998887763
No 305
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.69 E-value=20 Score=30.10 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHH-------------HHHHHHHHHhcCCHH
Q 016258 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVS-------------LAKVADVDRSIGNED 341 (392)
Q Consensus 275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~s-------------l~~la~~~~~~g~~~ 341 (392)
+......+..+...+..+..++..|..+++....+.... +....++.+..+ +-|||.=+..-..++
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~-~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~ 93 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEELKSKG-EGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLD 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHH
Confidence 333444455555555666677777777777665544321 112222222111 112232222224678
Q ss_pred HHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258 342 VAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQLSEK 384 (392)
Q Consensus 342 ~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~~~~ 384 (392)
+|++++++.++.++.. ........+...+..+..-+....+++
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999888888876 333444445555555555555544443
No 306
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=59.65 E-value=2.8 Score=38.29 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=30.3
Q ss_pred CCeeccccccc--cccCce--ec-cCCCcchHHhHHhcC-----CCC--CCCCCcc
Q 016258 88 GPLSCMICQAL--LFECSK--CT-PCSHVYCKACISRFK-----DCP--LCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~--~~~~p~--~~-~C~h~fC~~Ci~~~~-----~CP--~C~~~~~ 131 (392)
.+-.||||... |..+.+ +- .|-|.+|.+|+.+.+ .|| -|.+-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45789999874 332222 22 499999999998875 499 5875443
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.30 E-value=34 Score=30.04 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
++...+..+|+.|...|+++.|++.|.++.+....
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 57778899999999999999999999987665433
No 308
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=58.08 E-value=19 Score=25.33 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 337 IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.|++++|+..|++++ ..+|++..+...++.++-..|+.
T Consensus 4 ~~~~~~A~~~~~~~l------~~~p~~~~~~~~la~~~~~~g~~ 41 (68)
T PF14559_consen 4 QGDYDEAIELLEKAL------QRNPDNPEARLLLAQCYLKQGQY 41 (68)
T ss_dssp TTHHHHHHHHHHHHH------HHTTTSHHHHHHHHHHHHHTT-H
T ss_pred ccCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCCH
Confidence 466666665555554 55788999998999998888764
No 309
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.97 E-value=60 Score=24.31 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
|-+-|...-..|++++|+.+|.++++.+..-
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 3334444445699999999999999999884
No 310
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.32 E-value=7.1 Score=37.19 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=30.4
Q ss_pred Ceeccccccccc--cCceeccCCCcchHHhHHhc-------CCCCCCCC
Q 016258 89 PLSCMICQALLF--ECSKCTPCSHVYCKACISRF-------KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~ 128 (392)
-|.|||=.+... ++|+.+.|||..-..-+... +.||.|..
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 488997555433 37999999999988877665 45999975
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=1.7e+02 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
+..|++-.+++..+|++..|..++.+--+|+|
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyE 124 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYE 124 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHh
Confidence 34555555666666666665555444444444
No 312
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=56.86 E-value=1.4e+02 Score=33.11 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhhcC---C---CCC--cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 284 DLKYYGGDLQAARSYYVRSLNVRRDAVKRH---S---NVP--SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 284 ~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~---~---~~~--~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
+|...+.++.+|++.|-+.|......-... + .+. ...-|+-.-++.|-++.+. |+.++|...+++--.+++
T Consensus 493 EI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~-G~~~~A~q~L~qlq~mme 571 (820)
T PF13779_consen 493 EIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARS-GRMDEARQLLEQLQQMME 571 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 444445677888888888877543322111 1 111 1123555555666665555 999999999999999999
Q ss_pred Hh
Q 016258 356 SL 357 (392)
Q Consensus 356 ~l 357 (392)
++
T Consensus 572 nm 573 (820)
T PF13779_consen 572 NM 573 (820)
T ss_pred hc
Confidence 99
No 313
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.68 E-value=8.6 Score=33.55 Aligned_cols=42 Identities=24% Similarity=0.663 Sum_probs=29.8
Q ss_pred eeccccccccccCcee-------ccCCCcchHHhHHhcC---------------CCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKC-------TPCSHVYCKACISRFK---------------DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~-------~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~ 132 (392)
--|.||..+-- +..+ ..||..|-.-|+..|. .||.|..++..
T Consensus 166 ~~cgicyayql-dGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQL-DGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeec-CCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 44777776633 2222 3699999999999982 39999987754
No 314
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=56.28 E-value=1e+02 Score=30.03 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=25.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~ 376 (392)
|-+.....|.|++|++++.-+..+..+..+.|-...+...+...+..
T Consensus 112 Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ 158 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQ 158 (338)
T ss_pred HHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 44556677899999987666554444433333333333333333333
No 315
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=17 Score=34.22 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=26.4
Q ss_pred cCCCeeccccccccccCceecc---CCCcchHHhHHhc
Q 016258 86 KIGPLSCMICQALLFECSKCTP---CSHVYCKACISRF 120 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p~~~~---C~h~fC~~Ci~~~ 120 (392)
....|.|.+|.+.|.|.-++.. =.|.||.-|-++.
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSRes 302 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRES 302 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHH
Confidence 3367999999999996544432 2699999997765
No 316
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=56.02 E-value=36 Score=35.93 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHH--------------------HHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVA--------------------DVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 298 ~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la--------------------~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.|.+.|...+.++.+.+++.+.+.-....|+.+| .+|-.+|-+..+-.-|.+|++-.++-
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555666666666677776654432222222211 12333344444445555555555554
Q ss_pred -hcCCCchHHHHHHHHHHHHHHHH
Q 016258 358 -TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 358 -~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
..+|++-.+++-++-+...||++
T Consensus 102 l~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhh
Confidence 66788888888887777777665
No 317
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.96 E-value=4.6 Score=43.67 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=25.9
Q ss_pred CeeccccccccccCc-eeccCCCcchHHhHHhc
Q 016258 89 PLSCMICQALLFECS-KCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~ 120 (392)
.-.|.+|...|...| ++.+|||.|=+.||.+.
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 467999998766555 56699999999999775
No 318
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=55.49 E-value=74 Score=34.13 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=37.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHH--------------------HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHH
Q 016258 283 GDLKYYGGDLQAARSYYVRSLNVRR--------------------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~i~~--------------------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
|.+....++++++...++.++++.- .+++..+--+....+-+.+.||++..|..+|...+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 3334445778888888888777541 11111111111223445666777766666666666
Q ss_pred HHHHHHHHHH
Q 016258 343 AVDGFQEAIK 352 (392)
Q Consensus 343 A~~~~~eal~ 352 (392)
|-..+++|++
T Consensus 572 a~~~l~EAlK 581 (777)
T KOG1128|consen 572 AFRKLKEALK 581 (777)
T ss_pred HHHHHHHHhh
Confidence 6555555554
No 319
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.45 E-value=21 Score=23.70 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal 351 (392)
+||.+|..+|+.+.|.+.+++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 47889999999999988877766
No 320
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=55.41 E-value=88 Score=25.83 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=43.8
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--------VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 286 ~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d--------la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
....|+...++..+++++.+.+.-.=.......++.. ....+..++..+...|+++.|+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l------ 89 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL------ 89 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH------
Confidence 3445678888888888888776422111111233322 22334556667777787777776554444
Q ss_pred hcCCCchHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~ 378 (392)
..+|.+-.+-..+-.+|..+|
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g 110 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQG 110 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHCc
Confidence 445555544444444443333
No 321
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.11 E-value=48 Score=33.26 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+...-+.+.+...+|++.+|+...+.+++|-- .....|..-|.++..++.++.|++.|+++.+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~--------------syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDS--------------SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444455555555555555444322 22334555677778888888888888877654
No 322
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=53.79 E-value=9.8 Score=35.94 Aligned_cols=40 Identities=28% Similarity=0.770 Sum_probs=32.5
Q ss_pred Ceecccccccccc---CceeccCCCcchHHhHHhc----CCCCCCCC
Q 016258 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~ 128 (392)
..-||||...+++ .+..++|||..=..|++.. ..||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4569999998774 4788899999878888776 57999987
No 323
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=53.60 E-value=1.2e+02 Score=31.52 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=48.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~ 362 (392)
..|....|++++|+...++.-. .+.|....+...|.++..+|++++|...|.+-+ ...|+
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li------~rNPd 70 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELI------DRNPD 70 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCCC
Confidence 3455666888888876644322 233666678889999999999887776554433 56677
Q ss_pred chHHHHHHHHHH
Q 016258 363 EAGLEQRRLSVL 374 (392)
Q Consensus 363 ~a~~l~~~~~~~ 374 (392)
+..+-..+..++
T Consensus 71 n~~Yy~~L~~~~ 82 (517)
T PF12569_consen 71 NYDYYRGLEEAL 82 (517)
T ss_pred cHHHHHHHHHHH
Confidence 777766666665
No 324
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=51.89 E-value=2.2e+02 Score=30.92 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYGGD--LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 279 ~~~lg~l~~~~g~--l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...||.++...|+ +.++......+++ -++. .-..+..||.+...+|+.++|.+.|+-++.+=+
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr-------~dp~-------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALR-------LDPL-------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHh-------hCCC-------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 4455666666663 3333334444443 3332 234677899999999999999999999987644
No 325
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.76 E-value=2e+02 Score=26.57 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=61.1
Q ss_pred ch-hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHH
Q 016258 246 DA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 324 (392)
Q Consensus 246 dh-h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla 324 (392)
+| ...+.+.+.+.+.....+. .++.+...-.|+..+...|++++|..+|+..+...++-. +..=+.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~-----~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg--------W~~l~~ 218 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ-----NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG--------WWSLLT 218 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------cHHHHH
Confidence 45 4566776666554444433 566667777999999999999999999999977665411 111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 016258 325 VSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~ 346 (392)
..+..+..++..+|+.+..+..
T Consensus 219 ~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 219 EVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHhCCHHHHHHH
Confidence 4566788888888988777754
No 326
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=51.64 E-value=5.8 Score=31.36 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=24.7
Q ss_pred CCeeccccccccccC-ceeccCCCcchHHhHH
Q 016258 88 GPLSCMICQALLFEC-SKCTPCSHVYCKACIS 118 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~ 118 (392)
..-.|++|...|.+. -++.||||.|...|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456799999988854 4566999999999874
No 327
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=51.15 E-value=1e+02 Score=25.62 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHH
Q 016258 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+..+|+.-.+.++.-.++-.|++|+.+.+++ .+.-+..+++-..-...++|.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~ 58 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLAD 58 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHH
Confidence 4567888888899999999999999999999 3444444444333333334433
No 328
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=51.03 E-value=1.4e+02 Score=24.58 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
....-.....+.......|++++|+..+.+.+.+ .|-+ -.....+..++...|+...|+..|++..
T Consensus 58 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-------dP~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 58 RELYLDALERLAEALLEAGDYEEALRLLQRALAL-------DPYD-------EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334456777777888888888888877777653 3321 1234567788999999999999999999
Q ss_pred HHHHH-hhcCCC
Q 016258 352 KRLES-LTLKPE 362 (392)
Q Consensus 352 ~i~e~-l~~~p~ 362 (392)
..+.+ +...|.
T Consensus 124 ~~l~~elg~~Ps 135 (146)
T PF03704_consen 124 RRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHS----
T ss_pred HHHHHHhCcCcC
Confidence 99885 555555
No 329
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=51.01 E-value=1.1e+02 Score=27.99 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l 357 (392)
+.-++||+++..+++.|
T Consensus 188 ~AQl~Yh~q~~e~L~~l 204 (215)
T cd07593 188 DAELDYHQQSLDVLREV 204 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44578999999999999
No 330
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=51.00 E-value=1.4e+02 Score=27.34 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
++..|...|+++.++.+.++..-.+. ++++.++.. -.+.-++||+++-++++.|
T Consensus 162 elr~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L~~-------------lv~AQl~Yh~q~~e~L~~l 216 (220)
T cd07617 162 ELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHE-------------FVEAQATYYAQCYRHMLDL 216 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 67778888888877666644332222 222223221 1245678999999999887
No 331
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.64 E-value=3.1e+02 Score=28.41 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=67.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCC
Q 016258 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKP 361 (392)
Q Consensus 282 lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p 361 (392)
-|-+.+.++++.+|+....+.|++... + ...+=.+-+|-.|+.+...+|+..++.+...-++.+-.++ |
T Consensus 451 ~glfaf~qn~lnEaK~~l~e~Lkmana------e--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi---~ 519 (629)
T KOG2300|consen 451 YGLFAFKQNDLNEAKRFLRETLKMANA------E--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI---P 519 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcch------h--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC---C
Confidence 366667778999999998888877521 1 1112346678889999999999999998888888777766 4
Q ss_pred CchHHHHHHHHHHHHHHHHhhcCCC
Q 016258 362 EEAGLEQRRLSVLEFLNNQLSEKPP 386 (392)
Q Consensus 362 ~~a~~l~~~~~~~~~l~~~~~~~~~ 386 (392)
|+... -+..+++..|..+.-+++-
T Consensus 520 Di~vq-Lws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 520 DIPVQ-LWSSSILTDLYQALGEKGN 543 (629)
T ss_pred CchHH-HHHHHHHHHHHHHhCcchh
Confidence 54444 4467788888888777543
No 332
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.19 E-value=1.6e+02 Score=30.30 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 016258 339 NEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 339 ~~~~A~~~~~eal~i~e~l 357 (392)
+...|-..|++|...+++.
T Consensus 571 ~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 571 NIKRARKIFERANTYLKES 589 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5566777777777777765
No 333
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.14 E-value=1.3e+02 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
....||.+..+.|+.+.|..+|+..-+
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456888999999999999999986443
No 334
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=49.08 E-value=19 Score=30.98 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=31.0
Q ss_pred CCCeeccccccccccCceeccCCCcc-----hHHhHHhc------CCCCCCCCCccc
Q 016258 87 IGPLSCMICQALLFECSKCTPCSHVY-----CKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~f-----C~~Ci~~~------~~CP~C~~~~~~ 132 (392)
..+-.|.||.+--. +...||...- =..|+.+| ..|+.|+.++..
T Consensus 6 ~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 35678999988733 3445765322 57899999 349999987754
No 335
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=48.84 E-value=2.3e+02 Score=31.50 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhhc-----CCCCCcch--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 284 DLKYYGGDLQAARSYYVRSLNVRRDAVKR-----HSNVPSQV--LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 284 ~l~~~~g~l~~A~~~ye~sL~i~~~~~~~-----~~~~~~~~--~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
+|..-+.++.+|.+.|-+.|......-.. ...+...+ -|+-.-++.|-++.+. |+.++|..++++--.|+++
T Consensus 524 EI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~-G~~~~A~qlL~qlq~mmen 602 (851)
T TIGR02302 524 EIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARS-GDRDQAKQLLSQLQQMMNN 602 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 44445567888888888877643321100 01111112 2455555556555555 9999999999999999999
Q ss_pred h
Q 016258 357 L 357 (392)
Q Consensus 357 l 357 (392)
+
T Consensus 603 l 603 (851)
T TIGR02302 603 L 603 (851)
T ss_pred H
Confidence 9
No 336
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=48.82 E-value=2.6e+02 Score=29.99 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 016258 327 LAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~e 349 (392)
++-+.+++.+.|++++|.+++++
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHH
Confidence 44456666667777777666543
No 337
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=48.73 E-value=2.8e+02 Score=28.85 Aligned_cols=119 Identities=9% Similarity=0.129 Sum_probs=63.6
Q ss_pred hhhhhh-hhhhcchhHHHhHHHHH--------HHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 235 GMLGDC-CRAMGDADAAVAYFADS--------VEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 235 ~~~c~~-C~~~gdhh~a~~~~e~~--------~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.+||+. ...+++|.+.+..|+.- ..+.+.+.-..+-+.+.++...+.+.++.....++......+......
T Consensus 84 n~fG~yss~rmk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~ 163 (507)
T PF05600_consen 84 NIFGRYSSQRMKDWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKK 163 (507)
T ss_pred ceeccccchhHHHHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567753 33477777777766644 444455666677778888877777777776665555444433333332
Q ss_pred HHHHhhcCCCCCcchhhHHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 306 RRDAVKRHSNVPSQVLDVAVSLAKV----ADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l----a~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
.-..++-...++ ..++...+..| ..+...+.++..|+++|......+-
T Consensus 164 ~c~~lGI~G~ni--r~ELl~l~~~LP~~~~~i~~~i~~l~~aie~Y~~f~~~~~ 215 (507)
T PF05600_consen 164 ACKQLGIKGENI--REELLELVKELPSLFDEIVEAISDLQEAIEYYQAFVEFVH 215 (507)
T ss_pred HHHHhCCccchh--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221 11222222222 2223333557888888887777544
No 338
>PF12854 PPR_1: PPR repeat
Probab=48.59 E-value=39 Score=20.69 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
..+++-|-..+.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34788899999999999999998875
No 339
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=48.20 E-value=2.7e+02 Score=27.90 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=50.5
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
.+..+....++-.+|+.+..++. .. .+.+ ...+...+......++++.|+...+++++ ..|.
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL---~~-~p~d-------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~-------lsP~ 266 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEAL---KE-NPQD-------SELLNLQAEFLLSKKKYELALEIAKKAVE-------LSPS 266 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---Hh-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCch
Confidence 34444433344456666654443 11 1112 33445555566666777666665555553 3443
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
--.++..|+.+|..+|+++.|+-.+
T Consensus 267 -------~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 267 -------EFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred -------hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3457788999999999999888543
No 340
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.86 E-value=10 Score=38.52 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=28.1
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
....|.||...+......+.|+|.||..|+..+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~y 101 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGY 101 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHH
Confidence 468999999987634778899999999999887
No 341
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.80 E-value=1.2e+02 Score=27.95 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 016258 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLS 372 (392)
Q Consensus 294 ~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~-~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~ 372 (392)
.+++.++++++....... .-++..+. .+|..|...|++++|+.+|+.+...+++=.=..-...++.++..
T Consensus 156 ~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE 226 (247)
T ss_pred HHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 455556666655443221 12233344 79999999999999999999997776642111122344555555
Q ss_pred HHHHHHH
Q 016258 373 VLEFLNN 379 (392)
Q Consensus 373 ~~~~l~~ 379 (392)
.+..+++
T Consensus 227 Ca~~~~~ 233 (247)
T PF11817_consen 227 CAKRLGD 233 (247)
T ss_pred HHHHhCC
Confidence 5555544
No 342
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=47.06 E-value=67 Score=31.88 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=67.0
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHH-----HHHHHHhc--CCcH-------HHHHHHH---HHHhhhhhhhhhhcchh
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTED-----IRDQIERM--GNTS-------ELCSQLG---AVLGMLGDCCRAMGDAD 248 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h-----~~~~l~~~--~~~~-------~~C~~h~---~~L~~~c~~C~~~gdhh 248 (392)
.++.+.+..+.|..++|.......-.+ +...+... .+.. ..-..|+ -.+..+|+.|+..+.+.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 345566888899999987766311111 11111111 1111 1233332 24567899998888889
Q ss_pred HHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 249 AAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 249 ~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
+|..+++.+...+.. . ...+.++.....+|+..+|.+.++++|-+
T Consensus 346 kA~~~leaAl~~~~s----~--------~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 346 KASEALEAALKLRPS----A--------SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhcCCC----h--------hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999998866433211 1 24677888888889999999999999844
No 343
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.82 E-value=56 Score=24.76 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 334 DRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 334 ~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
....|..+.|+.+|++++.++++=
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHH
Confidence 344489999999999999999985
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.54 E-value=2.1e+02 Score=25.77 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~-sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.-+|+.+...+|.+++|+.......+ + ..+. .-.-.|+++..+|+-++|...|++++...
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~-------~---------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKE-------E---------SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcccc-------c---------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34566666666666666653322111 0 1122 22347899999999999999999999874
No 345
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.13 E-value=19 Score=39.89 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=35.7
Q ss_pred cCCCeeccccccccccCceeccCCC-----cchHHhHHhc--CCCCCCCCCccc
Q 016258 86 KIGPLSCMICQALLFECSKCTPCSH-----VYCKACISRF--KDCPLCGADIEK 132 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~--~~CP~C~~~~~~ 132 (392)
.....+|+-|-.... ..++..||. .||..|-... ..||.|+.....
T Consensus 623 EVg~RfCpsCG~~t~-~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 623 EIGRRKCPSCGKETF-YRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTP 675 (1121)
T ss_pred cccCccCCCCCCcCC-cccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCc
Confidence 345688999998876 778888985 4899995544 359999988776
No 346
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=45.86 E-value=11 Score=37.03 Aligned_cols=22 Identities=27% Similarity=0.907 Sum_probs=17.1
Q ss_pred CcchHHhHHhcC-----------------CCCCCCCCcc
Q 016258 110 HVYCKACISRFK-----------------DCPLCGADIE 131 (392)
Q Consensus 110 h~fC~~Ci~~~~-----------------~CP~C~~~~~ 131 (392)
...|..|+.+|+ .||.||+.|-
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 445889999983 2999999764
No 347
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.64 E-value=1.7e+02 Score=24.03 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQLSEK 384 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~~~~ 384 (392)
+..+-++|++.... ..+.+++-+++.++.++.- .-..-...+..++..+-..+.+++.+.
T Consensus 53 ~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 53 APVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred cHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566777777775 6677887777777777653 222333456677777777777777664
No 348
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=45.33 E-value=68 Score=34.52 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
+++.+...|...|+.++|++.|++.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666553
No 349
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.03 E-value=2.5e+02 Score=25.83 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHH
Q 016258 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRR 370 (392)
Q Consensus 292 l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~ 370 (392)
.+.|...|++++++....+. +.+ -.-+...||.-.-.|+.+|+.++|+..-++|..---.- ..-+++ .+ .-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~--~~~---p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~-~~-~d~ 214 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELP--PTH---PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEE-SY-KDS 214 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--TTS---HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTT-TH-HHH
T ss_pred HHHHHHhhhhHHHHHhcccC--CCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchh-hh-HHH
Confidence 46788899999988776432 211 12445556665567788999999988766665554432 211221 12 223
Q ss_pred HHHHHHHHHHhhc
Q 016258 371 LSVLEFLNNQLSE 383 (392)
Q Consensus 371 ~~~~~~l~~~~~~ 383 (392)
..+++.|++.+.-
T Consensus 215 ~~ilqlLrdNl~l 227 (236)
T PF00244_consen 215 TLILQLLRDNLTL 227 (236)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3466777776643
No 350
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.79 E-value=7.2 Score=42.17 Aligned_cols=62 Identities=26% Similarity=0.655 Sum_probs=0.0
Q ss_pred CcCCCeeccccccccccCceeccCCCc-----chHHhHHhc--CCCCCCCCCccc-chhhhHHHHHHHHHH
Q 016258 85 FKIGPLSCMICQALLFECSKCTPCSHV-----YCKACISRF--KDCPLCGADIEK-IEADTTLQDVVDRFI 147 (392)
Q Consensus 85 ~~~~~~~C~iC~~~~~~~p~~~~C~h~-----fC~~Ci~~~--~~CP~C~~~~~~-~~~n~~l~~~v~~~~ 147 (392)
+......|+-|-.... ..++..||.. +|..|-... ..||.|...... ...+..+..++.+..
T Consensus 651 vei~~r~Cp~Cg~~t~-~~~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~~~~~~~i~l~~~~~~A~ 720 (900)
T PF03833_consen 651 VEIGRRRCPKCGKETF-YNRCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETTSYSKQKIDLKEEYDRAL 720 (900)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EeeecccCcccCCcch-hhcCcccCCccccceeccccccccCccccccccccCcccceeecCHHHHHHHHH
Confidence 3446789999999877 7888889844 699998776 359999887665 333444444444433
No 351
>PLN03077 Protein ECB2; Provisional
Probab=44.58 E-value=4.7e+02 Score=28.85 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHH
Q 016258 280 NKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~ye~ 301 (392)
+.|-+.+...|++++|...|++
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh
Confidence 4445556666677777666654
No 352
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=44.24 E-value=19 Score=38.51 Aligned_cols=60 Identities=17% Similarity=0.376 Sum_probs=40.2
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHh--------cCCCCCCCCCccc--chhhhHHHHHHHHHHh
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISR--------FKDCPLCGADIEK--IEADTTLQDVVDRFIE 148 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~--------~~~CP~C~~~~~~--~~~n~~l~~~v~~~~~ 148 (392)
.|.|+|+.-.+.-+.+...|.|.-|..=..- .|.||+|.+.... +..+..+.+++.....
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred EecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 5999998776554555566666544322211 1779999987655 8888888888777654
No 353
>PLN02789 farnesyltranstransferase
Probab=44.10 E-value=2.5e+02 Score=27.19 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHH
Q 016258 299 YVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 299 ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l 377 (392)
|+++|+....+....+.+ .....+.+.+...+|.. .+++.+..++++ ..+|.+...-..++-++..+
T Consensus 88 l~eeL~~~~~~i~~npkn-------yqaW~~R~~~l~~l~~~-----~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKN-------YQIWHHRRWLAEKLGPD-----AANKELEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHHHHHHHHHCCcc-------hHHhHHHHHHHHHcCch-----hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 444444444444445542 33467777777777752 123345555444 77888888888888888888
Q ss_pred HHH
Q 016258 378 NNQ 380 (392)
Q Consensus 378 ~~~ 380 (392)
++.
T Consensus 156 ~~~ 158 (320)
T PLN02789 156 GGW 158 (320)
T ss_pred hhH
Confidence 763
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.40 E-value=1.3e+02 Score=29.60 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHH-----HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 291 DLQAARSYYVRSLNVR-----RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~-----~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.|+++...|..++... ..++.+.+-+ +.+|-.++.++..+|+++.|.++.++||=.+++.
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyH-------idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~ 73 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYH-------IDTLLQLSEVYRQQGDHAQANDLLERALFAFERA 73 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4566667777766632 2344556654 5677889999999999999999999999999975
No 355
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.24 E-value=1.4e+02 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 285 l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
-....|++++|+.+|.++|+....+....++
T Consensus 15 e~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 15 ELDQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3455689999999999999988877766554
No 356
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=42.71 E-value=1.7e+02 Score=27.18 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHh
Q 016258 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV----DGFQEAIKRLESL 357 (392)
Q Consensus 292 l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~----~~~~eal~i~e~l 357 (392)
.+.|...|++++++....+ .+.++ ..+...||.---.|+.+++.++|. ..|++|+..++.+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L--~pt~P---irLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l 208 (244)
T smart00101 144 AENTLVAYKSAQDIALAEL--PPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 208 (244)
T ss_pred HHHHHHHHHHHHHHHHccC--CCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 4578888888888755422 12221 245555666556778888888777 5667777777777
No 357
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=42.43 E-value=13 Score=21.71 Aligned_cols=7 Identities=43% Similarity=0.785 Sum_probs=3.5
Q ss_pred ccccccc
Q 016258 92 CMICQAL 98 (392)
Q Consensus 92 C~iC~~~ 98 (392)
||-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 5555544
No 358
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=42.40 E-value=3e+02 Score=26.02 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAV----DGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKP 385 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~----~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~~ 385 (392)
||.+..++||.++..+|+.+... +.|+..++.++..+ -...-...+...+...+.....+.+
T Consensus 97 dl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E--~sl~p~R~~r~~l~d~I~kLk~k~P 162 (271)
T PF13805_consen 97 DLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNRE--ESLQPSRDRRRKLQDEIAKLKYKDP 162 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHhHHHHHHHHHHHhcCC
Confidence 66677778887777777664443 44444444444442 2333356666666666665444433
No 359
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=42.39 E-value=1.7e+02 Score=32.92 Aligned_cols=72 Identities=17% Similarity=0.036 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.=++..+.-..|.|.+|.+.++..+..+..- ...+.+++.++...+..+...|-+.+|+++++.+++++...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e-------~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLE-------RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3445556666788888888887776654321 12234678888888888888899999999999999998887
No 360
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.03 E-value=1.1e+02 Score=29.07 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
-+--||.++...|++..|...|.+++++
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 3556799999999999999999999975
No 361
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.90 E-value=1.5e+02 Score=22.24 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 285 l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
-....|++++|+.+|+++++....++...++.
T Consensus 15 e~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 15 KAEKEGNAEDAITNYKKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 34567999999999999999988888777764
No 362
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=41.86 E-value=3.6e+02 Score=26.71 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=17.3
Q ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 016258 262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 262 ~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~s 302 (392)
.+|...+.+..-.+ ..|++.+|+...++....+.
T Consensus 216 skLs~DnTe~~yki-------s~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 216 SKLSQDNTEGHYKI-------SQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred HhccccchHHHHHH-------HHHHHhhhhHHHHHHHHHHH
Confidence 45666666554444 44555555554444433333
No 363
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.82 E-value=3.3e+02 Score=27.50 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHh--------hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 345 DGFQEAIKRLESL--------TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 345 ~~~~eal~i~e~l--------~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
..|.+.+..+.+. ...|+++.-..+++..|.+|..-+.+
T Consensus 115 ~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~ 161 (420)
T COG4942 115 RRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAE 161 (420)
T ss_pred HHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHH
Confidence 3455555555554 23345555557777777777766554
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.31 E-value=2.7e+02 Score=25.13 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|+.|...+|.+++|+ +++..+..+.-.+.....++.++-..|+
T Consensus 131 RLArvq~q~~k~D~AL-------~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 131 RLARVQLQQKKADAAL-------KTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHHHhhhHHHHH-------HHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 5777777777666555 4555553333333344444555444443
No 365
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.76 E-value=1.6e+02 Score=30.33 Aligned_cols=46 Identities=22% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV 373 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~ 373 (392)
.+.+||.++..+|++++|...+.+|..++-.+ -+..+.++..+-.+
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~--v~~~A~~lavyidL 666 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSL--VNVQATVLAVYIDL 666 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHH
Confidence 46689999999999999999999999998854 23445555444433
No 366
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.69 E-value=3.5e+02 Score=26.25 Aligned_cols=69 Identities=23% Similarity=0.208 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
...++.|-|.+.-|++++|.+.|+.++++. .- ..-+| -+++.+..+.|++..|+.+--+ |+++
T Consensus 145 d~~in~gCllykegqyEaAvqkFqaAlqvs-------Gy----qpllA---YniALaHy~~~qyasALk~iSE---IieR 207 (459)
T KOG4340|consen 145 DGQINLGCLLYKEGQYEAAVQKFQAALQVS-------GY----QPLLA---YNLALAHYSSRQYASALKHISE---IIER 207 (459)
T ss_pred chhccchheeeccccHHHHHHHHHHHHhhc-------CC----CchhH---HHHHHHHHhhhhHHHHHHHHHH---HHHh
Confidence 467888999999999999999999998652 11 11222 2567777788999988877443 3333
Q ss_pred -hhcCCC
Q 016258 357 -LTLKPE 362 (392)
Q Consensus 357 -l~~~p~ 362 (392)
+.+||+
T Consensus 208 G~r~HPE 214 (459)
T KOG4340|consen 208 GIRQHPE 214 (459)
T ss_pred hhhcCCc
Confidence 356665
No 367
>PRK15331 chaperone protein SicA; Provisional
Probab=40.26 E-value=1.4e+02 Score=26.01 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=60.1
Q ss_pred hhhHHHHHHHhhcHHHHHHHhh-hcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhC
Q 016258 186 LVQQAMRAFRAQNVESAKSRLS-LCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~-~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L 264 (392)
+.-.+...|++|++++|...|. +|. -...+.+ -+.-++-+|...++|..|+..|..+...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~--------~d~~n~~-------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---- 100 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCI--------YDFYNPD-------YTMGLAAVCQLKKQFQKACDLYAVAFTL---- 100 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 3444558899999999999995 221 1111111 1222445676678888899888766332
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 265 PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 265 ~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
...++.. .=.+|..+..+|+..+|+..|+.+++
T Consensus 101 ~~~dp~p-------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 101 LKNDYRP-------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ccCCCCc-------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2223221 23467788889999999999998887
No 368
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.75 E-value=2.2e+02 Score=23.67 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 016258 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD----VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 363 (392)
Q Consensus 290 g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d----la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~ 363 (392)
|-+++|-..|.+++++.+.+-. +..+| -|-....|+.++..+|+|++++.--+.+|-...+- +.+.+.
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~------eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPA------EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-T------TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred hhHHHHHHHHHHHHHHhccCCh------HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 6788999989888887654321 12233 24456789999999999999999999999998887 555553
No 369
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.68 E-value=3e+02 Score=26.26 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=42.1
Q ss_pred hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
.+|+.-|+... +|.+...+|-- .+++.+-.+.+.++++++-..+|.+.|.-.+.++.+.-.
T Consensus 44 ~~Al~sF~kVl----elEgEKgeWGF---KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 44 KEALSSFQKVL----ELEGEKGEWGF---KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred HHHHHHHHHHH----hcccccchhHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55666665543 34455555532 345666678889999999999999999988777665443
No 370
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.57 E-value=2.3e+02 Score=32.67 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=26.8
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
+++.....+++|.|..+.--|.++.++...++|...-
T Consensus 1180 ~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a 1216 (1320)
T PLN03188 1180 DENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA 1216 (1320)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677888888888888988888887776543
No 371
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.05 E-value=1.5e+02 Score=28.91 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+.++..++++.+-++|+.+.|.+.|.+..+.--. .....|+.-.+-.+|-.|....-.. +..++|-.+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs--------~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~l 170 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS--------LGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSL 170 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh--------cccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHH
Confidence 44556666666777777777777777666543221 2234578777777887776633222 233444444
Q ss_pred HHHhhcCCCchHH-HHHHHHHHHHHHHHh
Q 016258 354 LESLTLKPEEAGL-EQRRLSVLEFLNNQL 381 (392)
Q Consensus 354 ~e~l~~~p~~a~~-l~~~~~~~~~l~~~~ 381 (392)
+|+= - +| ++|+..+|+-+..|.
T Consensus 171 iE~G---g---DWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 171 IEEG---G---DWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHhC---C---ChhhhhhHHHHHHHHHHH
Confidence 4432 2 24 567777777666553
No 372
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=38.84 E-value=4e+02 Score=30.13 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCHH--------HHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQ--------AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~--------~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~ 342 (392)
+...+......+..++.+..++. +....+.+++++...+.....- ..++.-+.+.+..++..+.++.
T Consensus 58 l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~~~d~~d~f~~m~~kgIg-----~~lalfYe~~a~~lE~k~~~ke 132 (974)
T KOG1166|consen 58 LRNLLERCLEELEDLKRYRNDPRFLILWCSLELREELQDAEDFFSYLENKGIG-----TTLALFYEAYAKHLERKEYFKE 132 (974)
T ss_pred HHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHHHhhHHHHHHHHHhcccc-----chhHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555 3445555666666555443332 2456667778888888888888
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 016258 343 AVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLS 382 (392)
Q Consensus 343 A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~ 382 (392)
|...|+.. +++. ..| -..+++++...+..++.+.+
T Consensus 133 A~~v~q~G---iq~~-aeP-~~rL~~~~~~F~~r~~r~n~ 167 (974)
T KOG1166|consen 133 AKEVFQLG---IQNK-AEP-LERLLRQYSNFQQRLMRQNA 167 (974)
T ss_pred HHHHHHHH---HHhh-cCC-HHHHHHHHHHHHHHHhhhhc
Confidence 88888877 3333 223 34677778888888887733
No 373
>PHA02862 5L protein; Provisional
Probab=38.77 E-value=24 Score=29.84 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=28.7
Q ss_pred eeccccccccccCceeccCCCc-----chHHhHHhcC------CCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKCTPCSHV-----YCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~-----fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
-.|.||.+- . +...-||..+ .=+.|+.+|. .|++|+.++..
T Consensus 3 diCWIC~~~-~-~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDV-C-DERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCc-C-CCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 369999997 3 3335676532 2478999993 49999988764
No 374
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=38.32 E-value=3.2e+02 Score=25.08 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 290 GDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 290 g~l~~A~~~ye~sL~i~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+++.|...|+++.+.....+....++ ++++.++. .-.+.-++|++++.++|+.|
T Consensus 157 eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~-------------~lv~AQl~Yh~~a~eiL~~l 212 (223)
T cd07615 157 EEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLS-------------VLIEAALDYHRQSTEILEDL 212 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776544333221111 11222221 11245678999999999988
No 375
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.53 E-value=23 Score=33.83 Aligned_cols=9 Identities=33% Similarity=1.383 Sum_probs=6.8
Q ss_pred CCCCCCCcc
Q 016258 123 CPLCGADIE 131 (392)
Q Consensus 123 CP~C~~~~~ 131 (392)
||.|-..+.
T Consensus 406 CPFC~~~L~ 414 (429)
T KOG3842|consen 406 CPFCATQLA 414 (429)
T ss_pred Ccchhhhhc
Confidence 999976554
No 376
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.93 E-value=3.7e+02 Score=25.42 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI---GNEDVAVDGFQEAIKR 353 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~---g~~~~A~~~~~eal~i 353 (392)
+++-.+.+|+...|++++|.-.||+.+=+ .|-+. .-...+|+++..+ .+++.|..+|.+++++
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~-------~P~n~-------l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLI-------QPFNP-------LYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHc-------CCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 45667788998899999999988887632 23222 1233455555544 3557788899999887
Q ss_pred HH
Q 016258 354 LE 355 (392)
Q Consensus 354 ~e 355 (392)
..
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 66
No 377
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.51 E-value=24 Score=24.72 Aligned_cols=22 Identities=27% Similarity=0.927 Sum_probs=18.2
Q ss_pred CcchHHhHHhc--CCCCCCCCCcc
Q 016258 110 HVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 110 h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
.+||..|.... ..||-|+..+.
T Consensus 29 CTFC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHhcCcCcCCCCccc
Confidence 57999999988 57999987654
No 378
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.01 E-value=4.3e+02 Score=25.96 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=54.5
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHH
Q 016258 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGL 366 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~ 366 (392)
+.++-++|+.+.++..+..+... .++ .+.-....++.++-.+|+++.+.+.+.+...++.++ .-.|.....
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~--e~~------av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYK--EPD------AVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhc--cch------hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34578888888888777554422 221 344455567778889999999999999999999998 444434444
Q ss_pred HHHHHHHHH
Q 016258 367 EQRRLSVLE 375 (392)
Q Consensus 367 l~~~~~~~~ 375 (392)
-+++++-|.
T Consensus 159 fY~lssqYy 167 (380)
T KOG2908|consen 159 FYSLSSQYY 167 (380)
T ss_pred HHHHHHHHH
Confidence 555555443
No 379
>PF13041 PPR_2: PPR repeat family
Probab=35.48 E-value=86 Score=20.64 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 325 VSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 325 ~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+.+-+-..+.+.|+.++|.++|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467778888999999999988877655
No 380
>PF03491 5HT_transporter: Serotonin (5-HT) neurotransmitter transporter, N-terminus; InterPro: IPR013086 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters []. The serotonin (5-HT) neurotransmitter transporter is known to be expressed in the brain and also in the periphery: on platelet, placental and pulmonary cell membranes. The brain 5-HT transporter is thought to be the principal site of action of therapeutic anti-depressants (which inhibit this transporter), and it may also mediate the behavioural effects of cocaine and amphetamines []. The human form (630 amino acids) is 92% identical to the rat brain 5-HT transporter, and shares the same predicted topology and conserved sites for post-translational modification. This domain is found at the N-terminal region of some 5-HT neurotransmitters.; GO: 0005335 serotonin:sodium symporter activity, 0006836 neurotransmitter transport, 0005887 integral to plasma membrane
Probab=35.43 E-value=29 Score=22.50 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 016258 9 KARPDDASPRKPGENSNKYPA 29 (392)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (392)
|--|+..+.--+|.+||+|.+
T Consensus 7 Kg~p~~gdk~E~gqISNGYSa 27 (42)
T PF03491_consen 7 KGVPTPGDKAESGQISNGYSA 27 (42)
T ss_pred cccCCCCCccccceeccCccc
Confidence 334555666778999999943
No 381
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=35.21 E-value=89 Score=31.42 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
..++-|+-.+..|.+..|...|.++|.+- ++++ --++.-+-+.+.|...+|+..+|+.--+++++|=.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~id-------P~n~---~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNID-------PSNK---KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCC-------cccc---chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 34555777778899999999999988753 2221 13444566777777777777777766555555433
No 382
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.18 E-value=39 Score=31.34 Aligned_cols=45 Identities=18% Similarity=0.438 Sum_probs=33.6
Q ss_pred CCeecccccccccc---CceeccCCCcchHHhHHhcC--CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~~ 132 (392)
..|.|||=.-.+.. =-++.+|||.|-..-+.+.. .|++|++.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 46889876554331 13566899999998888874 69999998875
No 383
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=35.02 E-value=5.9e+02 Score=27.25 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=44.9
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
||-+.+...++.+|+..|..+. .+.+.+.++.+.++.....|+++. -.+..+...++..+.+
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl----~~~~dN~qilrDlslLQ~QmRd~~--------------~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNAL----KIEKDNLQILRDLSLLQIQMRDYE--------------GYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHH----hcCCCcHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHHHhhhhh
Confidence 4445555556666766665553 345556666555555443333333 3334444443333321
Q ss_pred CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
..+.-..+..+-.+|++..|.+..++.....
T Consensus 143 -------ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 143 -------RASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112223344555677777666555544443
No 384
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=34.82 E-value=2.1e+02 Score=26.41 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l 357 (392)
+.-++||+++-++++.|
T Consensus 209 ~AQl~Yh~q~~e~L~~l 225 (229)
T cd07594 209 EAQMTYYAQCYQYMDDL 225 (229)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567788888887776
No 385
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=34.78 E-value=1.5e+02 Score=30.40 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...-....++..++..-.++.++-.- ++|-++++++.-..-.++. -+.-.|.+|...|+++.-++++.-|+
T Consensus 294 ay~~~re~~~~~elE~lv~D~d~~Rm---qaLiirerILgpsh~d~sY------yir~rgavyad~g~~~rCi~LWkyAL 364 (615)
T KOG0508|consen 294 AYGYGREVNNREELEELVEDPDEMRM---QALIIRERILGPSHPDVSY------YIRYRGAVYADSGEFERCIRLWKYAL 364 (615)
T ss_pred hhhhhhhcCCHHHHHHHhcChHHHHH---HHHHHHHHHhCCCCCCcee------EEEeeeeeecCCccHHHHHHHHHHHH
Confidence 33444455566666666666665544 7777888887654443322 22345778999999999999999999
Q ss_pred HHHHHh--hcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESL--TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l--~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+.++. .-.|..+..+.+.+.++.++=+
T Consensus 365 ~mqQk~l~PlspmT~ssllsFaelFS~mL~ 394 (615)
T KOG0508|consen 365 DMQQKNLEPLSPMTASSLLSFAELFSFMLQ 394 (615)
T ss_pred HHHHhhcCCCCcccHHHHHHHHHHHHHHhh
Confidence 999985 4457777777788888877644
No 386
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.70 E-value=33 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.675 Sum_probs=21.5
Q ss_pred CCcchHHhHHhc--CCCCCCCCCccc--chhhhH
Q 016258 109 SHVYCKACISRF--KDCPLCGADIEK--IEADTT 138 (392)
Q Consensus 109 ~h~fC~~Ci~~~--~~CP~C~~~~~~--~~~n~~ 138 (392)
.++||..|.+.. ..||-|+..+.. +.+...
T Consensus 28 EcTFCadCae~~l~g~CPnCGGelv~RP~RPaa~ 61 (84)
T COG3813 28 ECTFCADCAENRLHGLCPNCGGELVARPIRPAAK 61 (84)
T ss_pred eeehhHhHHHHhhcCcCCCCCchhhcCcCChHHH
Confidence 478999999865 469999987654 554433
No 387
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=34.67 E-value=17 Score=24.54 Aligned_cols=40 Identities=28% Similarity=0.756 Sum_probs=20.2
Q ss_pred eeccccccccccCceeccCC-CcchHHhHHhcC----CCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKCTPCS-HVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.|--|--. +.-.+.|. |-.|..|+.... .||.|..+++.
T Consensus 3 ~nCKsCWf~---~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 3 YNCKSCWFA---NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ----SS-S-----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ccChhhhhc---CCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 344444333 33556676 777999998874 39999987653
No 388
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=34.60 E-value=2.8e+02 Score=30.39 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHH-HHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGL-EQRRLSVL 374 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~-l~~~~~~~ 374 (392)
++........+++.|..-++++++-+..+..|--.+++ +.++..++
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lk 447 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLK 447 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHH
Confidence 34444555567788888888888888777444333333 34444443
No 389
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=34.55 E-value=6.1e+02 Score=27.27 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-DRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~-~~~~g~~~~A~~~~~eal 351 (392)
..+.....+++.+...+.+....+...++.++ ++ .+. ...|+..-+..|-++|.- ....|+.+.|+..++.|-
T Consensus 378 ~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~---~l-~~~--r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD 451 (656)
T PRK06975 378 ASVHQLDSQFAQLDGKLADAQSAQQALEQQYQ---DL-SRN--RDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNAD 451 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-hcC--hhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444444444434344443333333332 12 222 245665556666667643 333399999999999999
Q ss_pred HHHHHh
Q 016258 352 KRLESL 357 (392)
Q Consensus 352 ~i~e~l 357 (392)
.++..+
T Consensus 452 ~~La~~ 457 (656)
T PRK06975 452 ARLATS 457 (656)
T ss_pred HHHHhc
Confidence 998886
No 390
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=34.39 E-value=1.8e+02 Score=31.04 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..+....-..+.++.+-|+++.|...|++++.+-=. .+-|++...-.-|++.....+++.|+...+.|..
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 334456667789999999999999999998864211 1225555555555555555555666555555443
Q ss_pred HHHH-----h-hcCCCchHHHHHHHHHHHHHHHH
Q 016258 353 RLES-----L-TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 353 i~e~-----l-~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+=.. . ..+|-+ .-+.+...+|.++-+.
T Consensus 454 vP~~~~~~~yd~~~pvQ-~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQ-ARLHRSLKIWSMYADL 486 (835)
T ss_pred CCCchhhhhhcCCCcHH-HHHHHhHHHHHHHHHH
Confidence 3222 1 223333 3344455666655443
No 391
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=34.18 E-value=27 Score=27.98 Aligned_cols=20 Identities=25% Similarity=0.815 Sum_probs=15.8
Q ss_pred CCcchHHhHHhc-------------CCCCCCCC
Q 016258 109 SHVYCKACISRF-------------KDCPLCGA 128 (392)
Q Consensus 109 ~h~fC~~Ci~~~-------------~~CP~C~~ 128 (392)
.-.||..||... |.||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 677999998554 56999986
No 392
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.62 E-value=3.7e+02 Score=27.37 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc---CCCCCcchhhHHHHHH-HHHHHHHhcCCHHHHH
Q 016258 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR---HSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAV 344 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~---~~~~~~~~~dla~sl~-~la~~~~~~g~~~~A~ 344 (392)
+++..-+..++.... -.+.++.|..|...|..+|++....... .....+.++.|+..+. +|..+|..+++-+-|+
T Consensus 170 PqiDkwl~vAL~das-~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 170 PQIDKWLQVALKDAS-SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred hhHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 445555666666544 4557899999999999999977654322 2233444456665555 7888999999888888
Q ss_pred HHHHHHH
Q 016258 345 DGFQEAI 351 (392)
Q Consensus 345 ~~~~eal 351 (392)
+.-.+++
T Consensus 249 nh~hrsI 255 (569)
T PF15015_consen 249 NHSHRSI 255 (569)
T ss_pred HHHhhhh
Confidence 7544443
No 393
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=33.46 E-value=4.9e+02 Score=28.31 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH---------------HHHhhcCCCCCcchhhHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------------RDAVKRHSNVPSQVLDVAVSLAKVA 331 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~---------------~~~~~~~~~~~~~~~dla~sl~~la 331 (392)
..+..+.++||+....+..+++|.++|.+.-... +......+++...+..+|..+..+|
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhc
Confidence 4466789999999999999999999999855422 2334445555555555554444433
No 394
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=33.35 E-value=5.7e+02 Score=27.56 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.-||+-|.+.|.+++|-+.|++++.-.-.+
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tv 281 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTV 281 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheeh
Confidence 447888999999999999999998876665
No 395
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=33.35 E-value=4.2e+02 Score=25.05 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 296 ~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
....+..|.+|+.++... ....+++..+-+++.+.+..|+++.|...+.++..
T Consensus 122 ~~~~~~il~~R~~~l~~~----~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 122 FSVWEPILSLRRLVLSLI----LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred hHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 334445666666555422 11225677777888888888888888877665554
No 396
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=33.01 E-value=44 Score=38.73 Aligned_cols=45 Identities=29% Similarity=0.653 Sum_probs=31.4
Q ss_pred CCeecccccccc--ccCceeccCCCcchHHhHHh-----c---------CCCCCCCCCccc
Q 016258 88 GPLSCMICQALL--FECSKCTPCSHVYCKACISR-----F---------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~--~~~p~~~~C~h~fC~~Ci~~-----~---------~~CP~C~~~~~~ 132 (392)
.+-.|.||+-.- .-+...+.|+|.|-..|... | ..||.|..++.-
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 356799997531 11467889999997777644 3 149999987664
No 397
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.82 E-value=2.5e+02 Score=22.17 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=34.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+..+......++..+.....++...+.+-...+.+.++.....+...+...
T Consensus 74 ~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 344555556666677777777888888755566667777777777776654
No 398
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=32.51 E-value=4e+02 Score=24.47 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l 357 (392)
+.-++||+++.++++.|
T Consensus 196 eAQl~Yh~qa~eiL~~l 212 (223)
T cd07613 196 QAQLEYHKQATQILQQV 212 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44578899999999888
No 399
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.23 E-value=18 Score=34.13 Aligned_cols=25 Identities=24% Similarity=0.971 Sum_probs=18.4
Q ss_pred CCCcchHHhHHhcC-----------------CCCCCCCCccc
Q 016258 108 CSHVYCKACISRFK-----------------DCPLCGADIEK 132 (392)
Q Consensus 108 C~h~fC~~Ci~~~~-----------------~CP~C~~~~~~ 132 (392)
|....|.+|+.+|+ .||.||+.+-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44456889998883 39999987654
No 400
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.91 E-value=38 Score=20.84 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=7.8
Q ss_pred hcCCCCCCCCC
Q 016258 119 RFKDCPLCGAD 129 (392)
Q Consensus 119 ~~~~CP~C~~~ 129 (392)
.-+.||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44678888764
No 401
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.90 E-value=1.1e+02 Score=25.04 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHH-------------HHHHHHHHhcCCHH
Q 016258 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL-------------AKVADVDRSIGNED 341 (392)
Q Consensus 275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl-------------~~la~~~~~~g~~~ 341 (392)
+......+..+...+..+..++..|+.+++....+... .....+..+..++ -++|.=+..-...+
T Consensus 8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~--~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~ 85 (126)
T TIGR00293 8 LQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA--EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAE 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHH
Confidence 34444555556666666667777777777766554332 1111122111111 11222122224568
Q ss_pred HHHHHHHHHHHHHHHh
Q 016258 342 VAVDGFQEAIKRLESL 357 (392)
Q Consensus 342 ~A~~~~~eal~i~e~l 357 (392)
+|+++++.-++.++..
T Consensus 86 eA~~~l~~~~~~l~~~ 101 (126)
T TIGR00293 86 EAIEFLKKRIEELEKA 101 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888776
No 402
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=31.68 E-value=7.3e+02 Score=27.29 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHH------HHHHHHHHhhcCCCCCcchhhHHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVR------SLNVRRDAVKRHSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~------sL~i~~~~~~~~~~~~~~~~dla~sl~-~la~~~~~~g~~~~A~~~~~e 349 (392)
....+.|++++.+.++++|+.+|.+ ++++.+-+. + +-++.|. .-|+-.+.+|+++.|+..|-+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p-------~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---P-------EEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---c-------HHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 3446668888888888888888776 333333221 2 2223333 457778888999999999888
Q ss_pred HHHHHHHh
Q 016258 350 AIKRLESL 357 (392)
Q Consensus 350 al~i~e~l 357 (392)
+-.+...+
T Consensus 732 a~~~~kai 739 (1636)
T KOG3616|consen 732 ANCLIKAI 739 (1636)
T ss_pred hhhHHHHH
Confidence 77766665
No 403
>PRK09343 prefoldin subunit beta; Provisional
Probab=31.52 E-value=2.9e+02 Score=22.56 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
++..+......+..+...++.+...+..++..+.......++... +.+-+..+-.+|.+.... +.+.|..-+++-
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~----L~~d~~VYk~VG~vlv~q-d~~e~~~~l~~r 79 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK----LPDDTPIYKIVGNLLVKV-DKTKVEKELKER 79 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcchhHHHhhHHHhhc-cHHHHHHHHHHH
Confidence 344444455555555555555556666666655544333222111 112233455566665554 555565555555
Q ss_pred HHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 351 IKRLESL--TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 351 l~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
++.++.- ...-....+...+..+-..|+.++..
T Consensus 80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555542 22222334555666666666666554
No 404
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=31.26 E-value=1.4e+02 Score=20.65 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG 365 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~ 365 (392)
.+=.+|..+..+|+|.+|..+.+..| +.+|++.-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL------~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALL------EIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH------HHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH------hhCCCcHH
Confidence 34567888899999998887755444 34566444
No 405
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=31.09 E-value=1.9e+02 Score=29.93 Aligned_cols=83 Identities=12% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCc-----------chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258 292 LQAARSYYVRSLNVRRDAVKRHSNVPS-----------QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 292 l~~A~~~ye~sL~i~~~~~~~~~~~~~-----------~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~ 360 (392)
+.+|..+|+++++.-+...++...... ...-..-.-..||...+.+|+.++|++.|++-++..-.+
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~--- 292 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL--- 292 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---
Q ss_pred CCchHHHHHHHHHHHHHH
Q 016258 361 PEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 361 p~~a~~l~~~~~~~~~l~ 378 (392)
+...+..++...+-.++
T Consensus 293 -~~l~IrenLie~LLelq 309 (539)
T PF04184_consen 293 -DNLNIRENLIEALLELQ 309 (539)
T ss_pred -chhhHHHHHHHHHHhcC
No 406
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.86 E-value=86 Score=17.72 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+++.+-+.+...|+.++|...|++-.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHh
Confidence 45667788888999999998887644
No 407
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=30.20 E-value=50 Score=21.73 Aligned_cols=35 Identities=23% Similarity=0.871 Sum_probs=16.4
Q ss_pred ccccccccccCceec--cCCCcchHHhHHhcC------CCCCC
Q 016258 92 CMICQALLFECSKCT--PCSHVYCKACISRFK------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~--~C~h~fC~~Ci~~~~------~CP~C 126 (392)
|.+|.++.....+.. .|+-.+=..|+..++ .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777766444444 366555567777663 38877
No 408
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=30.20 E-value=2.5e+02 Score=21.44 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.9
Q ss_pred HHHHh-hcCCCchHHHHHHHHHHHHHH
Q 016258 353 RLESL-TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 353 i~e~l-~~~p~~a~~l~~~~~~~~~l~ 378 (392)
..+.+ ..||..+..++++..++..||
T Consensus 58 av~~FE~~HP~l~~~lr~i~~sLa~MG 84 (85)
T PF14357_consen 58 AVERFEASHPKLAGILRNIMDSLANMG 84 (85)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHCC
Confidence 34444 789999999999999888776
No 409
>PRK10941 hypothetical protein; Provisional
Probab=30.07 E-value=3.8e+02 Score=25.30 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...+...+++|..++...++++.|+...+..|. -.++.+...+| .|.+|.++|.++.|..-|+.-+
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-------l~P~dp~e~RD-------RGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQ-------FDPEDPYEIRD-------RGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------hCCCCHHHHHH-------HHHHHHHcCCcHHHHHHHHHHH
Confidence 556778888999999888888877776666554 35555444444 5788999999999987655443
No 410
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=27 Score=36.96 Aligned_cols=38 Identities=29% Similarity=0.726 Sum_probs=30.2
Q ss_pred eecccccccccc----CceeccCCCcchHHhHHhcCC-CCCCCC
Q 016258 90 LSCMICQALLFE----CSKCTPCSHVYCKACISRFKD-CPLCGA 128 (392)
Q Consensus 90 ~~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~~~-CP~C~~ 128 (392)
-.|.+|+.. .+ -+.++.|+..||..|...... ||.|.-
T Consensus 655 r~C~vcq~p-edse~~v~rt~~C~~~~C~~c~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLP-EDSETDVCRTTFCYTPYCVACSLDYASISEVCGP 697 (717)
T ss_pred HHHHHhcCC-cCccccccCccccCCcchHhhhhhhhccCcccCc
Confidence 468899886 52 256778999999999988865 999974
No 411
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.49 E-value=2.1e+02 Score=20.40 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=24.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
+.-....|++++|+.+|.++++....+....+
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 33445579999999999999998877766553
No 412
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.49 E-value=4.3e+02 Score=25.30 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
+.++|++-|++.|++ .++..+|-+. .|-.+-.++..+|++++-.+.|.+.+..+...
T Consensus 42 ~p~~Al~sF~kVlel-------EgEKgeWGFK---ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 42 EPKEALSSFQKVLEL-------EGEKGEWGFK---ALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CHHHHHHHHHHHHhc-------ccccchhHHH---HHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 677888888877754 3444545443 46667789999999999999999999999986
No 413
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.35 E-value=14 Score=35.35 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=19.5
Q ss_pred CeeccccccccccCceeccC-----CCcchHHhHHhc----CCCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCTPC-----SHVYCKACISRF----KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C-----~h~fC~~Ci~~~----~~CP~C~~~ 129 (392)
.-.||||-.... -.++..= .+.+|..|-..| ..||.|+..
T Consensus 172 ~g~CPvCGs~P~-~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPV-LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EE-EEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCc-eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 368999998755 3333332 366799999999 469999864
No 414
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=29.28 E-value=4.8e+02 Score=24.44 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHH--------
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADS-------- 257 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~-------- 257 (392)
|...+...++.||+++|..-|. ......+ .=+--.+.+-++....+..+++..|+...++.
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe-------~l~~~~p----~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFE-------ALDSRHP----FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHH-------HHHHcCC----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q ss_pred ----------HHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHH
Q 016258 258 ----------VEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 258 ----------~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl 327 (392)
+.....+.....+ +.....+...++++-..-=+-+=+...-.+...++..+.+.+-.
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rD-q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~------------ 172 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRD-QSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA------------ 172 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccC-HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHH
Q 016258 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+|..|...|.+..|+..+++.++-...- ...+. +-++...|..||
T Consensus 173 --IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ea----L~~l~eaY~~lg 218 (254)
T COG4105 173 --IARYYLKRGAYVAAINRFEEVLENYPDTSAVREA----LARLEEAYYALG 218 (254)
T ss_pred --HHHHHHHhcChHHHHHHHHHHHhccccccchHHH----HHHHHHHHHHhC
No 415
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=29.00 E-value=29 Score=23.90 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=19.9
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc------CCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~ 128 (392)
.|.||.|...+. .. .++..|.... ..||+|..
T Consensus 2 ~f~CP~C~~~~~-~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFS-ES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccC-HH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 578999988533 21 2345555544 35999975
No 416
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=28.99 E-value=5.8e+02 Score=25.38 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHHH------------HHhhcCCCCCcchhhHHHHHHH-------------------HHHHHHhcCC
Q 016258 291 DLQAARSYYVRSLNVRR------------DAVKRHSNVPSQVLDVAVSLAK-------------------VADVDRSIGN 339 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~------------~~~~~~~~~~~~~~dla~sl~~-------------------la~~~~~~g~ 339 (392)
.+++|+..|.++.++.. .+.+...+....+..+...++. ++.+..-.|+
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d 320 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD 320 (374)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC
Confidence 58899999999877542 1222222222233344433332 4456666788
Q ss_pred HHHHHHHHHHHHHH
Q 016258 340 EDVAVDGFQEAIKR 353 (392)
Q Consensus 340 ~~~A~~~~~eal~i 353 (392)
+++|+..++++..+
T Consensus 321 ~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 321 YEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888777776644
No 417
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.58 E-value=69 Score=26.01 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh------------hHHHHHHHHH-HHHHhcCCH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL------------DVAVSLAKVA-DVDRSIGNE 340 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~------------dla~sl~~la-~~~~~~g~~ 340 (392)
.+......|..+......+...+..|+.+++....+.....+...... +--..+-++| .++.. ...
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve-~~~ 85 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE-KSL 85 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE-ecH
Confidence 344445555666666667777777777877766665433222111000 1011112233 22222 456
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l 357 (392)
++|+.++++.++.++..
T Consensus 86 ~eA~~~l~~r~~~l~~~ 102 (129)
T cd00890 86 EEAIEFLKKRLETLEKQ 102 (129)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888888775
No 418
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=28.49 E-value=2.6e+02 Score=25.19 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+.+.+..+..++.|-.-|..++.-++.+ +.+|+++.-+.++..+....+
T Consensus 97 i~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr 147 (204)
T cd07661 97 IADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVR 147 (204)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHH
Confidence 3445555555566665566666666554 466766666655555444433
No 419
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=3.8e+02 Score=24.64 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=11.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 016258 333 VDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 333 ~~~~~g~~~~A~~~~~eal~i 353 (392)
....-.+..+|+.+|+..|.+
T Consensus 140 RkQdsa~~~e~a~wy~dyLGl 160 (246)
T KOG4657|consen 140 RKQDSADIHEAASWYNDYLGL 160 (246)
T ss_pred HHhhhhccHHHHHHHHHhcCc
Confidence 333334556667777666543
No 420
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=7e+02 Score=25.94 Aligned_cols=125 Identities=20% Similarity=0.096 Sum_probs=71.2
Q ss_pred hHHHhHHHHHHHHHHhCCCCC--hhHHHHHH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh-hH
Q 016258 248 DAAVAYFADSVEFLMKLPMDD--LEIIHTLS-VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DV 323 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~--~e~~~~ls-~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~-dl 323 (392)
|.+..+-++.....+++...+ ..+..+++ ..+..+--.....|++.+|+.....+.+...+. +. +..++ .-
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~----p~-~~Llr~~~ 366 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF----PT-PLLLRAHE 366 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC----Cc-hHHHHHhH
Confidence 666666666544444444432 22333333 345666667777899999998776666644332 11 00011 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+-.-.-+|.-....+.++.|...|.+|.+..++..- .+...-+++++|-..+++
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl---~a~~nlnlAi~YL~~~~~ 420 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL---QAFCNLNLAISYLRIGDA 420 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH---HHHHHHhHHHHHHHhccH
Confidence 112223454455557778888888888888776621 455667777777665543
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.99 E-value=1.8e+02 Score=29.69 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=58.0
Q ss_pred hccCHHHHHHHHHHHHHHHH--------H--HhhcCCCCCcchhhHHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 288 YGGDLQAARSYYVRSLNVRR--------D--AVKRHSNVPSQVLDVAVSLA---KVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~--------~--~~~~~~~~~~~~~dla~sl~---~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
....++.|+..|.+++++-. + +.=+......++.|....+. .....|...|.+-.|+..|.+|+.-+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 34688899999999988542 1 11111111112222111111 24457778899999999999999999
Q ss_pred HHh-hcCCCchHHHHHHHHHHHH
Q 016258 355 ESL-TLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 355 e~l-~~~p~~a~~l~~~~~~~~~ 376 (392)
+.. ...|.+..+.+.+..+-..
T Consensus 96 ~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 96 EKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHhhhcCcCcHHHHHHHHHHHHH
Confidence 998 7789988888888776433
No 422
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=27.44 E-value=3.5e+02 Score=22.17 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=35.1
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 286 ~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
....++++.++..+.+.+...... ....+..++..+...+.+..|...+..++....
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD-------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc-------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 445566666666666666544332 233455667777777777777777776666554
No 423
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=27.40 E-value=5.2e+02 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHH
Q 016258 338 GNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 338 g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.++..++..+...+..+..+ .+.+....++.++..+...+.
T Consensus 230 ~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~ 272 (291)
T TIGR00996 230 DALDDALAALSGASAQVRDLLAENRPNLPQALANLAPVLTLLV 272 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444443 334555555555555544443
No 424
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=27.18 E-value=1.2e+02 Score=24.46 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~ 362 (392)
+..|..+-.-|.++...|+++.|--+|-+.+.+++.+..||+
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~~Hpd 76 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIPKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHCCSCC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 355667778889999999999999999999999966677776
No 425
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=26.64 E-value=1.3e+02 Score=17.16 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 327 LAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal 351 (392)
++-+-..+...|++++|...|.+-.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556677888899999998887653
No 426
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.63 E-value=49 Score=22.75 Aligned_cols=11 Identities=45% Similarity=1.313 Sum_probs=5.6
Q ss_pred CCCCCCCCccc
Q 016258 122 DCPLCGADIEK 132 (392)
Q Consensus 122 ~CP~C~~~~~~ 132 (392)
.||+|+.++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 49999987766
No 427
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=26.37 E-value=31 Score=26.80 Aligned_cols=37 Identities=27% Similarity=0.712 Sum_probs=29.1
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcCCCCCCCCCcc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~CP~C~~~~~ 131 (392)
.-.|.||-..+. .=||.||..|--....|..|+..+.
T Consensus 44 ~~~C~~CK~~v~------q~g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVH------QPGAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred Cccccccccccc------cCCCccChhhhcccCcccccCCeec
Confidence 357999977655 2377899999877788999998763
No 428
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.34 E-value=57 Score=37.28 Aligned_cols=58 Identities=19% Similarity=0.620 Sum_probs=40.2
Q ss_pred CCeeccccccccccCceeccCCCcc-----hHHhHHhc-------CCCCCCCCCccc-----chhhhHHHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVY-----CKACISRF-------KDCPLCGADIEK-----IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~f-----C~~Ci~~~-------~~CP~C~~~~~~-----~~~n~~l~~~v~~~ 146 (392)
..+.||-|-.... ..++..||... |..|-... ..||.|..++.. +.....+....+.+
T Consensus 666 ~~rkCPkCG~~t~-~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 666 GRRRCPSCGTETY-ENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEEECCCCCCccc-cccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 4688999998866 67888898654 88886543 369999987765 44444554444444
No 429
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.27 E-value=2.7e+02 Score=23.28 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHH
Q 016258 297 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK----VADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRL 371 (392)
Q Consensus 297 ~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~----la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~ 371 (392)
..|+..|+.--..+..+.. .++.++-. ++.++..+...++....|.+.+.-++.+ ..-.....++..+.
T Consensus 34 ~R~Q~HL~~cA~~Va~~Q~------~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v 107 (131)
T PF10158_consen 34 SRYQEHLNQCAEAVAFDQN------ALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTV 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhc
Q 016258 372 SVLEFLNNQLSE 383 (392)
Q Consensus 372 ~~~~~l~~~~~~ 383 (392)
.+++.|++.|++
T Consensus 108 ~~ie~LN~~LP~ 119 (131)
T PF10158_consen 108 PSIETLNEILPE 119 (131)
T ss_pred HHHHHHHhhCCh
No 430
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=26.23 E-value=94 Score=27.99 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.|+.....+|++.+|...|+|++.
T Consensus 94 rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhc
Confidence 377777888888888888888865
No 431
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=25.90 E-value=6.8e+02 Score=25.55 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=25.0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
+.....++.|.|..+.--|.++.++...++|...-+
T Consensus 412 Nk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~ 447 (488)
T PF06548_consen 412 NKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQ 447 (488)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333345667888888888888888887777765443
No 432
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=25.79 E-value=45 Score=33.93 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHH----HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYG-GDLQAARSYYVRSLNVRRD----AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 278 ~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~----~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
++.-+|..+-.. .++-.|..+..++++.+.. +.+..+-.+....+-....++...+....++.+. +.=+++-
T Consensus 247 alEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~RmqaLi 323 (615)
T KOG0508|consen 247 ALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQALI 323 (615)
T ss_pred HHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHHHH
Confidence 344444444333 3667788888899988765 2333443444444555555556666666665543 3457888
Q ss_pred HHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 353 RLESL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 353 i~e~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
|.+++ ..||+.+.+.+-++.+|.+.|++
T Consensus 324 irerILgpsh~d~sYyir~rgavyad~g~~ 353 (615)
T KOG0508|consen 324 IRERILGPSHPDVSYYIRYRGAVYADSGEF 353 (615)
T ss_pred HHHHHhCCCCCCceeEEEeeeeeecCCccH
Confidence 99998 78899988888888887777665
No 433
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.73 E-value=9e+02 Score=26.43 Aligned_cols=73 Identities=21% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHH-H---------HHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVR-S---------LNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~-s---------L~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
.+-.|++.....|.-++|.+.|-+ + +++.+....-+..+.-++.++..-+.+-+.-....+++.+|++.+
T Consensus 854 llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~ 933 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKD 933 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHh
Confidence 455666667677777777765543 1 112221111111111223344445555554444557777788777
Q ss_pred HHH
Q 016258 348 QEA 350 (392)
Q Consensus 348 ~ea 350 (392)
+++
T Consensus 934 Rka 936 (1189)
T KOG2041|consen 934 RKA 936 (1189)
T ss_pred hhc
Confidence 666
No 434
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=25.69 E-value=5.7e+02 Score=24.12 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=60.9
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HHHHHh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN-VRRDAV 310 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~-i~~~~~ 310 (392)
..+-.|..+|+..|.+..|..+...............+.+ ... -..+....|+..+|+...+..++ ......
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v------~~e-~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRV------FLE-YAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcch------HHH-HHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 3445566678777777666655443322211111112222 122 23355567888888888877776 222110
Q ss_pred hc-------------------CCCCCcchhhHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHH
Q 016258 311 KR-------------------HSNVPSQVLDVAVSLAKVADVDRSI------GNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 311 ~~-------------------~~~~~~~~~dla~sl~~la~~~~~~------g~~~~A~~~~~eal~i~e~ 356 (392)
.. ...........+..+-.+|.-...+ +..+.++..|+++..+..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 00 0001112234555566666665555 6677777777777766554
No 435
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.54 E-value=37 Score=23.36 Aligned_cols=29 Identities=31% Similarity=0.852 Sum_probs=19.1
Q ss_pred eccccccccc---cCceeccCCCcchHHhHHh
Q 016258 91 SCMICQALLF---ECSKCTPCSHVYCKACISR 119 (392)
Q Consensus 91 ~C~iC~~~~~---~~p~~~~C~h~fC~~Ci~~ 119 (392)
.|.+|...|. .......||+.||..|...
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~ 35 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSN 35 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCC
Confidence 4666654332 2455668999999988744
No 436
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=25.46 E-value=4.2e+02 Score=22.46 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=35.2
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
..|++..|+..++.-. ..... ...-..+.-+|+..++..+++.+|+..|++-+++
T Consensus 22 ~~~~Y~~A~~~le~L~---~ryP~-----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALD---TRYPF-----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HhCCHHHHHHHHHHHH---hcCCC-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5566677766554432 22111 1122235667888999999999999988887754
No 437
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.26 E-value=1.1e+02 Score=33.09 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=19.9
Q ss_pred CCCcchHHhHHhcC----------CCCCCCCCccc
Q 016258 108 CSHVYCKACISRFK----------DCPLCGADIEK 132 (392)
Q Consensus 108 C~h~fC~~Ci~~~~----------~CP~C~~~~~~ 132 (392)
|+|.||..||..|. .|+.|..-+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 99999999999983 27888765544
No 438
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.22 E-value=70 Score=25.97 Aligned_cols=38 Identities=29% Similarity=0.656 Sum_probs=26.3
Q ss_pred eeccccccccccCce-------------eccCCCcchHHhHHhc----CCCCCCC
Q 016258 90 LSCMICQALLFECSK-------------CTPCSHVYCKACISRF----KDCPLCG 127 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~-------------~~~C~h~fC~~Ci~~~----~~CP~C~ 127 (392)
-.|--|+..|.+.+. ...|.+.||..|=.-+ ..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 348888887663322 6789999999884332 4699885
No 439
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=25.15 E-value=32 Score=34.30 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=29.7
Q ss_pred CcCCCeeccccccccccCceeccCCCcchHHhHHhc-CCCCCCCCCccc
Q 016258 85 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEK 132 (392)
Q Consensus 85 ~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~ 132 (392)
..++++.|.+|...+. +++.|. .| -| .||... ..||.|.+.|.-
T Consensus 263 n~iGdyiCqLCK~kYe-D~F~LA-QH-rC-~RIV~vEYrCPEC~KVFsC 307 (500)
T KOG3993|consen 263 NVIGDYICQLCKEKYE-DAFALA-QH-RC-PRIVHVEYRCPECDKVFSC 307 (500)
T ss_pred ccHHHHHHHHHHHhhh-hHHHHh-hc-cC-CeeEEeeecCCcccccccC
Confidence 3457899999999977 877763 12 12 244433 569999887763
No 440
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.00 E-value=23 Score=34.17 Aligned_cols=40 Identities=18% Similarity=0.488 Sum_probs=27.9
Q ss_pred CeeccccccccccCceecc----CC--CcchHHhHHhcC----CCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCTP----CS--HVYCKACISRFK----DCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~----C~--h~fC~~Ci~~~~----~CP~C~~~ 129 (392)
.-.||||-.... -.++.. =| +.+|..|-..|. .||.|..+
T Consensus 184 ~~~CPvCGs~P~-~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPV-ASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhh-hhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 458999999855 333322 23 556999999993 59999863
No 441
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=25.00 E-value=3.1e+02 Score=28.65 Aligned_cols=19 Identities=21% Similarity=0.597 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHHHHhc
Q 016258 319 QVLDVAVSLAKVADVDRSI 337 (392)
Q Consensus 319 ~~~dla~sl~~la~~~~~~ 337 (392)
...|.+..|.++||+.+++
T Consensus 404 ~iid~a~~lE~IgDiie~l 422 (533)
T COG1283 404 EIIDAAINLEHIGDIIERL 422 (533)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3457777788888776654
No 442
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=24.97 E-value=32 Score=24.94 Aligned_cols=10 Identities=30% Similarity=1.281 Sum_probs=6.1
Q ss_pred cchHHhHHhc
Q 016258 111 VYCKACISRF 120 (392)
Q Consensus 111 ~fC~~Ci~~~ 120 (392)
-||+.|+..|
T Consensus 11 gFCRNCLskW 20 (68)
T PF06844_consen 11 GFCRNCLSKW 20 (68)
T ss_dssp S--HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4888888777
No 443
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=2.1e+02 Score=28.84 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=22.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 281 KIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
+.|--+..++++++|+.+|++.|.+..+
T Consensus 27 ~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 27 EQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 4455566778999999999999997765
No 444
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=24.83 E-value=4.8e+02 Score=29.58 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 016258 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKR 353 (392)
Q Consensus 298 ~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~-~~~A~~~~~eal~i 353 (392)
.|+.+|++.+.+++.++++-...+ -||..+..+|. .++|.+.|-.|.++
T Consensus 17 ~YeealEqskkvLk~dpdNYnA~v-------FLGvAl~sl~q~le~A~ehYv~AaKl 66 (1238)
T KOG1127|consen 17 EYEEALEQSKKVLKEDPDNYNAQV-------FLGVALWSLGQDLEKAAEHYVLAAKL 66 (1238)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhh-------HHHHHHHhccCCHHHHHHHHHHHHhc
Confidence 578888888888888887643333 36667777776 88898888777654
No 445
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=24.81 E-value=5.5e+02 Score=23.63 Aligned_cols=17 Identities=6% Similarity=0.213 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l 357 (392)
+.-++||+++-++++.|
T Consensus 209 ~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 209 EAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45668899999998887
No 446
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.68 E-value=1.5e+02 Score=17.13 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 326 sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+++.+-..+...|+.+.|...|++-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56777888888999999888776644
No 447
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.65 E-value=45 Score=35.69 Aligned_cols=45 Identities=31% Similarity=0.824 Sum_probs=31.6
Q ss_pred CCeeccccccccccC---------ceeccCCCcc--------------------hHHhHHhcCC------------CCCC
Q 016258 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFKD------------CPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~~------------CP~C 126 (392)
+.-.|+-|+.-++|+ ..++.||..| |..|..++.+ ||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 446788888777642 2456777777 9999988742 9999
Q ss_pred CCCccc
Q 016258 127 GADIEK 132 (392)
Q Consensus 127 ~~~~~~ 132 (392)
+-.+..
T Consensus 180 GP~~~l 185 (750)
T COG0068 180 GPHLFL 185 (750)
T ss_pred CCCeEE
Confidence 865544
No 448
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.34 E-value=35 Score=32.04 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=16.0
Q ss_pred eeccccccccccCceeccC--CCcc
Q 016258 90 LSCMICQALLFECSKCTPC--SHVY 112 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C--~h~f 112 (392)
|.||+|...|......+-| +|+|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 7899999988644444544 5665
No 449
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=24.01 E-value=35 Score=33.69 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=24.6
Q ss_pred eecccccccccc-CceeccCCCcchHHhHHhc
Q 016258 90 LSCMICQALLFE-CSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 ~~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~ 120 (392)
..|+||+.+... --.+..|..+.|..|+.++
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheecc
Confidence 579999998652 2355679999999999876
No 450
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.87 E-value=1.1e+02 Score=25.03 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHH-------------HHHHHHHHHHHhcCC
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA-------------VSLAKVADVDRSIGN 339 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla-------------~sl~~la~~~~~~g~ 339 (392)
..+......|..+......+...+..|+.+++....+..... ....+..+. ..+-++|.=+..-..
T Consensus 6 ~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~-~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~ 84 (129)
T cd00584 6 AQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADE-GKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKD 84 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEec
Confidence 334444555566666666777888888888887766644211 111111110 011223332233355
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016258 340 EDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 340 ~~~A~~~~~eal~i~e~l 357 (392)
.++|+.++++.++.+++.
T Consensus 85 ~~eA~~~l~~r~~~l~~~ 102 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQ 102 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688888888888888876
No 451
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=23.70 E-value=4.1e+02 Score=21.71 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
....++..+...+.+..|+..+..++..... ....+..++.++...+.+..+...+.+++....
T Consensus 204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPD--------------NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4555666666667777777777777765433 223344555555566777777777666665544
No 452
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.64 E-value=3.7e+02 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 016258 337 IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~i~e~l 357 (392)
-++|++|..+|+-+++.+...
T Consensus 23 a~nY~eA~~lY~~aleYF~~~ 43 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALEYFLHA 43 (439)
T ss_pred hhchHHHHHHHHHHHHHHHHH
Confidence 388889999999988888775
No 453
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.14 E-value=32 Score=28.67 Aligned_cols=41 Identities=29% Similarity=0.640 Sum_probs=24.1
Q ss_pred CCeeccccccccccCceeccCCC-------cchHHhHHhc--------CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSH-------VYCKACISRF--------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h-------~fC~~Ci~~~--------~~CP~C~~~~~~ 132 (392)
++-+|-||+.-- +.--||| .||..|-.+. |.|-+|+.....
T Consensus 64 ddatC~IC~KTK----FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 64 DDATCGICHKTK----FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEI 119 (169)
T ss_pred cCcchhhhhhcc----cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHH
Confidence 457899998753 3445666 3455553322 458888764433
No 454
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=22.45 E-value=1e+02 Score=21.31 Aligned_cols=24 Identities=29% Similarity=1.004 Sum_probs=12.3
Q ss_pred eeccCCCcchHHhHHh----cCCCCCCC
Q 016258 104 KCTPCSHVYCKACISR----FKDCPLCG 127 (392)
Q Consensus 104 ~~~~C~h~fC~~Ci~~----~~~CP~C~ 127 (392)
+...|++.||..|=.= ...||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 4557889999999432 24698873
No 456
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.40 E-value=7.3e+02 Score=26.06 Aligned_cols=139 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHhCC-CCChhHHHHHHHHHHHH---------HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 248 DAAVAYFADSVEFLMKLP-MDDLEIIHTLSVSLNKI---------GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~-~~~~e~~~~ls~~~~~l---------g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
..+...|+.|......+. ...+++...|-.+...+ ..+......++.+.......++....+.+....+.
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr 135 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNR 135 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cchhhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHh----------hcCCCchHHHHHHHHHHHHHHHHhhcCCC
Q 016258 318 SQVLDVAVSLAKVA-DVDRSIGNEDVAVDGFQEAIKRLESL----------TLKPEEAGLEQRRLSVLEFLNNQLSEKPP 386 (392)
Q Consensus 318 ~~~~dla~sl~~la-~~~~~~g~~~~A~~~~~eal~i~e~l----------~~~p~~a~~l~~~~~~~~~l~~~~~~~~~ 386 (392)
..+-.+-..+..+- .+......|-.|.+.+++.+.-++.. .++-....++..+..-...|...|.+.|+
T Consensus 136 ~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~ 215 (560)
T PF06160_consen 136 EEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPK 215 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 457
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=2.8e+02 Score=27.27 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
+.++.-.++-|+-++.-.+|..|...|.+.|+.
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~ 110 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK 110 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh
Confidence 447777888899998889999999999988864
No 458
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=22.23 E-value=9.4e+02 Score=25.41 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhhhhhhhhcch---hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLGDCCRAMGDA---DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG--GDLQAARSYYV 300 (392)
Q Consensus 226 ~C~~h~~~L~~~c~~C~~~gdh---h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~--g~l~~A~~~ye 300 (392)
.|..+.+...+.|.+--....| .+...+-++-+-.+-..+.. ..--.++.+||+|.+.. .....++..|.
T Consensus 229 ~C~r~mevaa~v~aiNpsi~~~td~~e~~~lqq~lLw~lyd~ghl-----~~YPmALg~LadLeEi~pt~~r~~~~~l~~ 303 (618)
T PF05053_consen 229 VCDRHMEVAALVSAINPSIDAHTDSVELAQLQQDLLWLLYDMGHL-----ARYPMALGNLADLEEIDPTPGRPTPLELFN 303 (618)
T ss_dssp E--HHHHHHHHHHC---ECCTTEEEHHHHHHHHHHHHHHHHTTTT-----TT-HHHHHHHHHHHHHS--TTS--HHHHHH
T ss_pred eecccchHHHHHHhcCCccccccchHHHHHHHHHHHHHHHhcCch-----hhCchhhhhhHhHHhhccCCCCCCHHHHHH
Confidence 5888877777777643233333 34444444434444444332 22335788999998776 35778899999
Q ss_pred HHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 301 ~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
+++...+.-....+- ==+.-+|--+.+.++|.+|+..+.+|-..++.-
T Consensus 304 ~AI~sa~~~Y~n~Hv---------YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 304 EAISSARTYYNNHHV---------YPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHHCTT--S---------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCcc---------ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988776542221 112334555555677777777777776666654
No 459
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.20 E-value=9.4e+02 Score=25.36 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-------HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCC-HHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR-------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN-EDV 342 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~-------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~-~~~ 342 (392)
+...|-.+.+.|..+....+.|.+.......++.... ..++...-++..+-.+-..|..|-.+.++-|- .+.
T Consensus 243 ~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~ 322 (557)
T COG0497 243 ALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIED 322 (557)
T ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3444444555555554444455554444444433222 22222222222333333334444444333333 455
Q ss_pred HHHHHHHHHHHHHHh
Q 016258 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~eal~i~e~l 357 (392)
.++++++...-+..+
T Consensus 323 l~~~~~~~~~el~~L 337 (557)
T COG0497 323 LLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555555
No 460
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=22.15 E-value=4.8e+02 Score=23.58 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+.-.-.||..|.. .+.++|+.+|..++++... .+.-+..++..|++++..+++.
T Consensus 141 ~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 141 AELQYALATYYTK-RDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcch
Confidence 4444567777775 7889999999988887763 3355677899999999888765
No 461
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.09 E-value=5.9e+02 Score=29.42 Aligned_cols=124 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHH
Q 016258 249 AAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLA 328 (392)
Q Consensus 249 ~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~ 328 (392)
.......+..+.++.+...........+.+..-+.......++.+++....+..++..+..+......++.+..||..+-
T Consensus 1423 ~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL 1502 (1758)
T KOG0994|consen 1423 QLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVL 1502 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q ss_pred HHH------HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 016258 329 KVA------DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLS 372 (392)
Q Consensus 329 ~la------~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~ 372 (392)
.|. .+....|.+.+++..+.....||.+-.-+-..+..|...+.
T Consensus 1503 ~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~ 1552 (1758)
T KOG0994|consen 1503 ALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAE 1552 (1758)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHH
No 462
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=20.98 E-value=1.7e+02 Score=28.77 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+..|-.-|.-|..+|.|++|++-|..++ ..+|.++.+--|+++.|..+..
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~i------a~~P~NpV~~~NRA~AYlk~K~ 146 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAI------AVYPHNPVYHINRALAYLKQKS 146 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhh------ccCCCCccchhhHHHHHHHHHH
Confidence 3345567888999999999998886654 3456666665556665555443
No 463
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=5.9e+02 Score=27.39 Aligned_cols=57 Identities=21% Similarity=0.039 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 290 g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.+|..+++.|..++.-.- ++..+ .+.+.....++-.|-.+.+++.|+++|+||.+.-
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~------~D~~~--~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDII------SDNYS--DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHHHHHHHHHhcc------chhhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 466677777777665211 11111 1335556678899999999999999999997654
No 464
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=1.2e+02 Score=28.42 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=31.4
Q ss_pred CCeeccccccccccCce---eccCCC-----cchHHhHHhcC------------CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSK---CTPCSH-----VYCKACISRFK------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~---~~~C~h-----~fC~~Ci~~~~------------~CP~C~~~~~~ 132 (392)
.+-.|.||+.-=.|++. +-||.. -.=.+|+..|. .||.|+..+..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 46889999998664433 235542 22578999983 29999988776
No 465
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.62 E-value=2e+02 Score=27.00 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=45.4
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
.++++|..+.... +....|.+.+.+.+..++...+. +.+.++|-..+.+-|+.+.++.+.......+..+
T Consensus 176 ~~~~e~~~v~e~~---~~~~pispid~e~qe~~kleRkr-------lrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~ 245 (279)
T KOG0837|consen 176 LEKDEPQTVAEIP---ELKEPISPIDMEDQEKIKLERKR-------LRNREAASKCRKRKLDRISRLEDKVKTLKIYNRD 245 (279)
T ss_pred HhhccchhhccCc---ccCCCCCcccchhHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 4555666555433 33445555555555444433322 3345577778888888777766666665666667
Q ss_pred HHHHHHHHH
Q 016258 323 VAVSLAKVA 331 (392)
Q Consensus 323 la~sl~~la 331 (392)
|+..+.+|-
T Consensus 246 L~~~l~~l~ 254 (279)
T KOG0837|consen 246 LASELSKLK 254 (279)
T ss_pred HHHHHHHHH
Confidence 766555444
No 466
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=2.2e+02 Score=31.31 Aligned_cols=61 Identities=26% Similarity=0.116 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL---TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l---~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
.++....+-|+-....|+++.|..+|-+++..++-- ..-+ ++....+|.+.++.|.+.--.
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfL-daq~IknLt~YLe~L~~~gla 429 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFL-DAQRIKNLTSYLEALHKKGLA 429 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhc-CHHHHHHHHHHHHHHHHcccc
Confidence 455566788998999999999999999999888764 3333 344556677777766654433
No 467
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=20.43 E-value=7.7e+02 Score=24.53 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=47.8
Q ss_pred hhhhcchhHHHhHHHHHHHHHHhC----CCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258 241 CRAMGDADAAVAYFADSVEFLMKL----PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 241 C~~~gdhh~a~~~~e~~~~~~~~L----~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~ 316 (392)
++...+|..-+.+.+.- +.+ ......++...+-++|. ....|+.++|+..+.+.|.. .....
T Consensus 151 yRdiqdydamI~Lve~l----~~~p~~~~~~~~~i~~~yafALnR----rn~~gdre~Al~il~~~l~~------~~~~~ 216 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETL----EALPTCDVANQHNIKFQYAFALNR----RNKPGDREKALQILLPVLES------DENPD 216 (374)
T ss_pred hhhhhhHHHHHHHHHHh----hccCccchhcchHHHHHHHHHHhh----cccCCCHHHHHHHHHHHHhc------cCCCC
Confidence 44556677777666543 333 22234455555555554 12257777777766665322 12221
Q ss_pred CcchhhHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHH
Q 016258 317 PSQVLDVAVSLAKVADVDRS---------IGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 317 ~~~~~dla~sl~~la~~~~~---------~g~~~~A~~~~~eal~i~ 354 (392)
.+++.-+|.+|.. ...+++|+.+|.++-++-
T Consensus 217 -------~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 217 -------PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred -------hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 2233344433332 234677888888776654
No 468
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=20.35 E-value=8.9e+02 Score=26.26 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 284 DLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 284 ~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.+...++..++|+...+++|+. .+. .-..+.-+|++++++++.+.|.+.|.+
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~-------fp~-------f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKS-------FPD-------FHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHh-------CCc-------hHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555543 322 112234466666666666666665543
No 469
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=8.2e+02 Score=24.05 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 016258 338 GNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 338 g~~~~A~~~~~eal~i~e~ 356 (392)
.++.+|..+|-+++...++
T Consensus 195 R~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 195 RNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HhHHHHHHHHHHHcccccc
Confidence 4555666666665554443
No 470
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.31 E-value=23 Score=24.73 Aligned_cols=6 Identities=50% Similarity=1.508 Sum_probs=2.9
Q ss_pred CCCCCC
Q 016258 123 CPLCGA 128 (392)
Q Consensus 123 CP~C~~ 128 (392)
||.|++
T Consensus 31 CpKCK~ 36 (55)
T PF14205_consen 31 CPKCKQ 36 (55)
T ss_pred CCCCCc
Confidence 555543
No 471
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.28 E-value=1.7e+02 Score=27.26 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 289 ~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.++.+.+...|.++|+..- +.+..+-.+|...+.-|+.+.|...|++.+++
T Consensus 8 ~~D~~aaaely~qal~lap--------------~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 8 SGDAEAAAELYNQALELAP--------------EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cCChHHHHHHHHHHhhcCc--------------hhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4677888888888886521 34556667888888889999999988888765
No 472
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=20.20 E-value=5.9e+02 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAG 365 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~ 365 (392)
+.|....+..|+.|.--|.-.+.-++++ +.+|+.+.
T Consensus 129 I~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~ 166 (229)
T PF06456_consen 129 IPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAK 166 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhc
Confidence 6677777788888887788888878877 45666544
No 473
>PRK10941 hypothetical protein; Provisional
Probab=20.14 E-value=2.9e+02 Score=26.03 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+..-+++|..++...++++.|+. ..+.+ .-.|++..-.+-+|.+|..|+-
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~-------~~e~ll~l~P~dp~e~RDRGll~~qL~c 230 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALR-------ASEALLQFDPEDPYEIRDRGLIYAQLDC 230 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHH-------HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45567788888888888776664 44454 5678888888888999887764
No 474
>PRK10869 recombination and repair protein; Provisional
Probab=20.05 E-value=1e+03 Score=24.96 Aligned_cols=138 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred cch-hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc------CCCCC
Q 016258 245 GDA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR------HSNVP 317 (392)
Q Consensus 245 gdh-h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~------~~~~~ 317 (392)
|.| |...---+....++..+.+. ..+...++..+..+..+...+.++........+-++..+-..++ .+..-
T Consensus 129 gQ~~~~~ll~~~~~~~lLD~~~~~-~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~ 207 (553)
T PRK10869 129 GQHAHQLLLKPEHQKTLLDAYANE-TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEF 207 (553)
T ss_pred CcChHHHhcCHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcH
Q ss_pred cchhhHHHHHHH-------HHHHHHhcCC-H-HHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 318 SQVLDVAVSLAK-------VADVDRSIGN-E-DVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 318 ~~~~dla~sl~~-------la~~~~~~g~-~-~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
+.+......|.+ +..++..+.. - ..|...+..++..++.+ .-+|.-..+...+..++..|.+...+
T Consensus 208 eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~ 283 (553)
T PRK10869 208 EQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDE 283 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHH
No 475
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=20.03 E-value=5.2e+02 Score=27.95 Aligned_cols=48 Identities=23% Similarity=0.110 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHHH
Q 016258 333 VDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 333 ~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
||..--+++..+...++++.++++- ...|+-.-+--.++-+++.+++.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH
Confidence 3443344444444444555555443 44566555556677777766654
Done!