Query 016258
Match_columns 392
No_of_seqs 257 out of 2429
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.3 1.8E-12 6E-17 101.2 6.1 62 88-150 12-83 (92)
2 1t1h_A Gspef-atpub14, armadill 99.3 1.9E-12 6.5E-17 97.7 3.2 61 88-149 7-74 (78)
3 2kr4_A Ubiquitin conjugation f 99.2 6.8E-12 2.3E-16 96.4 5.0 62 88-150 13-80 (85)
4 2kre_A Ubiquitin conjugation f 99.2 5.3E-12 1.8E-16 100.0 4.5 61 88-149 28-94 (100)
5 1wgm_A Ubiquitin conjugation f 99.2 2.8E-11 9.5E-16 95.5 8.5 62 88-150 21-89 (98)
6 1jm7_B BARD1, BRCA1-associated 99.2 4.5E-12 1.5E-16 103.5 3.5 63 88-151 21-88 (117)
7 3n71_A Histone lysine methyltr 99.2 1.7E-10 5.8E-15 116.8 15.7 130 241-380 319-451 (490)
8 3fl2_A E3 ubiquitin-protein li 99.2 1.2E-11 3.9E-16 102.1 3.6 61 88-149 51-119 (124)
9 3qww_A SET and MYND domain-con 99.2 2.7E-10 9.3E-15 113.6 14.0 119 243-371 310-431 (433)
10 2y43_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 95.0 4.8 64 88-152 21-91 (99)
11 3lrq_A E3 ubiquitin-protein li 99.1 2.5E-11 8.5E-16 96.2 3.3 61 88-149 21-89 (100)
12 2yu4_A E3 SUMO-protein ligase 99.1 3.9E-11 1.3E-15 94.0 4.4 63 88-151 6-84 (94)
13 4ayc_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 100.8 4.3 59 88-147 52-114 (138)
14 3qwp_A SET and MYND domain-con 99.1 5.9E-10 2E-14 111.1 12.8 127 242-378 298-427 (429)
15 1z6u_A NP95-like ring finger p 99.1 6.3E-11 2.2E-15 100.9 4.3 60 88-148 77-144 (150)
16 2csy_A Zinc finger protein 183 99.0 1.9E-10 6.5E-15 87.3 5.3 50 88-138 14-68 (81)
17 2ckl_A Polycomb group ring fin 99.0 1.1E-10 3.7E-15 93.8 4.1 61 88-149 14-85 (108)
18 2egp_A Tripartite motif-contai 99.0 2.7E-11 9.1E-16 91.5 0.2 53 88-141 11-76 (79)
19 3l11_A E3 ubiquitin-protein li 99.0 2.3E-10 7.9E-15 92.9 4.1 60 88-148 14-87 (115)
20 2c2l_A CHIP, carboxy terminus 99.0 2.9E-10 1E-14 106.4 5.4 61 88-149 207-274 (281)
21 2f42_A STIP1 homology and U-bo 99.0 3.5E-10 1.2E-14 98.5 4.9 61 88-149 105-172 (179)
22 3hct_A TNF receptor-associated 99.0 3.7E-10 1.3E-14 92.2 4.5 58 88-146 17-81 (118)
23 1jm7_A BRCA1, breast cancer ty 98.9 1.6E-10 5.5E-15 93.2 1.4 61 88-149 20-89 (112)
24 2ckl_B Ubiquitin ligase protei 98.9 4.3E-10 1.5E-14 97.3 4.0 60 88-148 53-121 (165)
25 2ysl_A Tripartite motif-contai 98.9 1.1E-09 3.7E-14 81.2 5.6 44 88-132 19-69 (73)
26 1bor_A Transcription factor PM 98.9 2.8E-10 9.7E-15 80.1 1.6 44 88-132 5-49 (56)
27 2ecw_A Tripartite motif-contai 98.9 2.9E-10 1E-14 86.7 1.6 53 88-141 18-82 (85)
28 2yur_A Retinoblastoma-binding 98.9 8E-10 2.7E-14 82.4 3.7 43 88-131 14-63 (74)
29 2djb_A Polycomb group ring fin 98.9 1.1E-09 3.8E-14 81.1 4.4 44 88-132 14-62 (72)
30 3edt_B KLC 2, kinesin light ch 98.9 9.3E-08 3.2E-12 86.6 18.0 170 196-380 14-185 (283)
31 2ecy_A TNF receptor-associated 98.9 1.1E-09 3.7E-14 79.7 3.7 44 88-132 14-62 (66)
32 2d8t_A Dactylidin, ring finger 98.9 1.2E-09 4E-14 80.7 3.9 44 88-132 14-61 (71)
33 2ecv_A Tripartite motif-contai 98.9 3.5E-10 1.2E-14 86.3 1.0 52 88-140 18-81 (85)
34 3knv_A TNF receptor-associated 98.9 3E-10 1E-14 95.7 0.6 52 78-130 17-76 (141)
35 3htk_C E3 SUMO-protein ligase 98.9 2.4E-09 8.3E-14 97.7 6.6 62 88-150 180-252 (267)
36 3n71_A Histone lysine methyltr 98.9 1.5E-08 5.1E-13 102.5 12.8 143 194-352 320-463 (490)
37 4ic3_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 81.6 2.3 44 88-132 23-67 (74)
38 1g25_A CDK-activating kinase a 98.8 1.8E-09 6.1E-14 78.3 3.1 44 88-132 2-55 (65)
39 2ct2_A Tripartite motif protei 98.8 1.2E-09 3.9E-14 84.1 2.0 44 88-132 14-68 (88)
40 2ysj_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 76.0 4.3 38 88-126 19-63 (63)
41 1rmd_A RAG1; V(D)J recombinati 98.8 2.6E-09 9E-14 86.7 3.9 56 88-144 22-85 (116)
42 3ulq_A Response regulator aspa 98.8 5E-07 1.7E-11 87.3 20.3 172 189-380 109-280 (383)
43 3hcs_A TNF receptor-associated 98.8 2.3E-09 7.8E-14 93.2 3.1 58 88-146 17-81 (170)
44 2ea6_A Ring finger protein 4; 98.8 3.9E-09 1.3E-13 77.1 3.8 43 88-131 14-67 (69)
45 1x4j_A Ring finger protein 38; 98.7 5.2E-09 1.8E-13 78.0 3.8 46 86-132 20-72 (75)
46 3gw4_A Uncharacterized protein 98.7 2.2E-07 7.4E-12 80.6 14.8 161 193-379 2-162 (203)
47 3nf1_A KLC 1, kinesin light ch 98.7 1.3E-06 4.3E-11 80.5 20.7 180 186-380 30-211 (311)
48 3ng2_A RNF4, snurf, ring finge 98.7 3E-09 1E-13 78.3 2.2 44 88-132 9-63 (71)
49 3edt_B KLC 2, kinesin light ch 98.7 9.3E-07 3.2E-11 79.9 19.0 155 187-356 47-201 (283)
50 2ecj_A Tripartite motif-contai 98.7 9E-09 3.1E-13 72.5 4.2 38 88-126 14-58 (58)
51 3qww_A SET and MYND domain-con 98.7 5.6E-08 1.9E-12 96.8 11.5 105 270-380 290-398 (433)
52 3ro3_A PINS homolog, G-protein 98.7 9.2E-07 3.1E-11 72.7 17.1 137 231-380 9-145 (164)
53 2ifu_A Gamma-SNAP; membrane fu 98.7 5.9E-07 2E-11 84.5 17.9 165 192-378 45-209 (307)
54 3u3w_A Transcriptional activat 98.7 1.2E-06 4E-11 81.7 19.7 168 192-379 84-251 (293)
55 2yho_A E3 ubiquitin-protein li 98.7 4.5E-09 1.5E-13 79.3 2.2 43 89-132 18-61 (79)
56 3q15_A PSP28, response regulat 98.7 1E-06 3.6E-11 85.0 19.1 171 189-380 107-277 (378)
57 1e4u_A Transcriptional repress 98.7 1.1E-08 3.7E-13 76.9 3.8 45 88-132 10-62 (78)
58 2xeu_A Ring finger protein 4; 98.7 5.5E-09 1.9E-13 75.1 1.9 44 88-132 2-56 (64)
59 1chc_A Equine herpes virus-1 r 98.7 8.8E-09 3E-13 75.2 3.0 45 88-132 4-52 (68)
60 2ecg_A Baculoviral IAP repeat- 98.7 8.9E-09 3E-13 76.9 2.9 44 88-132 24-68 (75)
61 2ifu_A Gamma-SNAP; membrane fu 98.7 2.8E-07 9.7E-12 86.8 13.8 170 193-379 1-170 (307)
62 2ecm_A Ring finger and CHY zin 98.6 1.3E-08 4.6E-13 70.8 3.1 44 88-131 4-54 (55)
63 2kiz_A E3 ubiquitin-protein li 98.6 2.2E-08 7.4E-13 73.3 4.3 45 88-132 13-63 (69)
64 3gw4_A Uncharacterized protein 98.6 2.6E-06 8.7E-11 73.6 18.3 154 186-359 29-182 (203)
65 3sf4_A G-protein-signaling mod 98.6 1.7E-06 6E-11 82.7 18.8 170 192-382 196-365 (406)
66 2l0b_A E3 ubiquitin-protein li 98.6 1.1E-08 3.9E-13 79.3 2.2 43 88-131 39-88 (91)
67 2ect_A Ring finger protein 126 98.6 1.8E-08 6.2E-13 75.6 3.3 45 88-132 14-64 (78)
68 1iym_A EL5; ring-H2 finger, ub 98.6 2.3E-08 8E-13 69.6 3.5 44 88-131 4-54 (55)
69 1qqe_A Vesicular transport pro 98.6 1.7E-06 5.9E-11 80.7 17.4 165 194-379 48-214 (292)
70 1qqe_A Vesicular transport pro 98.6 1.5E-06 5.3E-11 81.1 16.6 129 238-379 44-173 (292)
71 3nf1_A KLC 1, kinesin light ch 98.6 2.9E-06 9.8E-11 78.0 18.1 152 190-356 76-227 (311)
72 4a1s_A PINS, partner of inscut 98.6 4.6E-06 1.6E-10 80.5 19.9 169 188-379 53-238 (411)
73 2ea5_A Cell growth regulator w 98.5 5.2E-08 1.8E-12 71.2 4.0 44 88-132 14-58 (68)
74 3ro3_A PINS homolog, G-protein 98.5 1.3E-05 4.3E-10 65.7 19.1 147 190-357 16-162 (164)
75 2ecn_A Ring finger protein 141 98.5 1.6E-08 5.4E-13 74.2 1.0 43 88-132 14-60 (70)
76 2qfc_A PLCR protein; TPR, HTH, 98.5 3.5E-06 1.2E-10 78.4 17.3 168 192-379 84-251 (293)
77 4gyw_A UDP-N-acetylglucosamine 98.5 5.7E-07 2E-11 95.2 12.2 130 226-379 4-160 (723)
78 4gyw_A UDP-N-acetylglucosamine 98.5 8.8E-07 3E-11 93.8 13.4 104 229-357 75-178 (723)
79 4gcn_A Protein STI-1; structur 98.5 1.8E-06 6E-11 70.4 12.3 105 231-353 8-112 (127)
80 2ep4_A Ring finger protein 24; 98.5 6.6E-08 2.2E-12 71.7 3.2 45 88-132 14-64 (74)
81 4ap4_A E3 ubiquitin ligase RNF 98.5 3.6E-08 1.2E-12 81.5 1.8 44 88-132 6-60 (133)
82 3ulq_A Response regulator aspa 98.5 1E-06 3.5E-11 85.0 12.5 132 236-379 108-239 (383)
83 3sf4_A G-protein-signaling mod 98.5 8.6E-06 3E-10 77.8 19.0 138 230-380 186-323 (406)
84 1v87_A Deltex protein 2; ring- 98.5 4.7E-08 1.6E-12 78.9 2.5 43 89-132 25-94 (114)
85 3q15_A PSP28, response regulat 98.5 1.3E-06 4.3E-11 84.4 13.1 133 235-379 105-237 (378)
86 4gco_A Protein STI-1; structur 98.5 3.1E-06 1.1E-10 68.9 13.3 115 228-373 10-124 (126)
87 4a1s_A PINS, partner of inscut 98.5 9.5E-06 3.3E-10 78.2 19.1 138 230-380 222-359 (411)
88 3ro2_A PINS homolog, G-protein 98.4 1.7E-05 5.8E-10 73.1 19.1 137 231-380 183-319 (338)
89 3ro2_A PINS homolog, G-protein 98.4 1.1E-05 3.9E-10 74.3 17.7 169 190-379 50-238 (338)
90 3qwp_A SET and MYND domain-con 98.4 5.1E-07 1.7E-11 89.8 8.2 101 273-380 285-387 (429)
91 4gcn_A Protein STI-1; structur 98.4 2.5E-06 8.5E-11 69.5 10.5 94 272-379 4-98 (127)
92 4i17_A Hypothetical protein; T 98.3 8.8E-06 3E-10 72.2 14.6 155 188-380 12-169 (228)
93 1wim_A KIAA0161 protein; ring 98.3 7.8E-08 2.7E-12 74.9 0.9 61 88-149 4-84 (94)
94 2ecl_A Ring-box protein 2; RNF 98.3 4E-07 1.4E-11 68.9 4.4 45 88-132 14-76 (81)
95 3upv_A Heat shock protein STI1 98.3 1.8E-05 6.2E-10 63.3 14.7 122 231-377 4-125 (126)
96 3t6p_A Baculoviral IAP repeat- 98.3 1.5E-07 5.1E-12 90.5 2.2 44 88-132 294-338 (345)
97 2hr2_A Hypothetical protein; a 98.3 7.9E-05 2.7E-09 63.5 18.9 133 232-371 12-150 (159)
98 3u3w_A Transcriptional activat 98.3 1.9E-05 6.5E-10 73.4 16.2 116 232-359 156-272 (293)
99 2vje_B MDM4 protein; proto-onc 98.3 1.5E-07 5E-12 67.7 1.2 44 88-132 6-56 (63)
100 4g1t_A Interferon-induced prot 98.3 6.6E-06 2.2E-10 81.1 13.5 133 233-379 53-187 (472)
101 3rkv_A Putative peptidylprolyl 98.3 3.4E-05 1.2E-09 64.8 15.7 131 232-382 12-150 (162)
102 1p5q_A FKBP52, FK506-binding p 98.2 2.3E-05 7.8E-10 74.9 15.7 136 226-381 142-281 (336)
103 2vje_A E3 ubiquitin-protein li 98.2 1.8E-07 6E-12 67.5 0.6 44 88-132 7-57 (64)
104 4b4t_Q 26S proteasome regulato 98.2 3.4E-05 1.2E-09 75.0 16.8 170 190-379 11-190 (434)
105 2y1n_A E3 ubiquitin-protein li 98.2 4.7E-07 1.6E-11 87.7 3.1 43 89-132 332-379 (389)
106 4ap4_A E3 ubiquitin ligase RNF 98.2 4.4E-07 1.5E-11 74.8 2.1 45 87-132 70-125 (133)
107 3vtx_A MAMA; tetratricopeptide 98.2 2E-05 6.8E-10 67.3 12.5 52 192-257 14-65 (184)
108 2pl2_A Hypothetical conserved 98.2 8.8E-06 3E-10 72.4 10.5 143 192-380 48-201 (217)
109 2qfc_A PLCR protein; TPR, HTH, 98.2 3.2E-05 1.1E-09 71.8 14.8 116 231-358 155-271 (293)
110 4i17_A Hypothetical protein; T 98.2 3.4E-05 1.2E-09 68.3 14.2 154 189-374 48-224 (228)
111 3sz7_A HSC70 cochaperone (SGT) 98.1 5.1E-05 1.8E-09 63.8 14.2 126 231-385 11-136 (164)
112 1hz4_A MALT regulatory protein 98.1 0.00023 8E-09 67.7 20.5 169 190-379 21-189 (373)
113 2fbn_A 70 kDa peptidylprolyl i 98.1 9.2E-05 3.1E-09 64.3 15.7 135 229-383 36-175 (198)
114 2hr2_A Hypothetical protein; a 98.1 4.9E-05 1.7E-09 64.8 13.3 104 275-380 10-118 (159)
115 4ga2_A E3 SUMO-protein ligase 98.1 2.2E-05 7.6E-10 65.6 11.1 82 278-379 33-114 (150)
116 4gco_A Protein STI-1; structur 98.1 2.2E-05 7.5E-10 63.8 10.7 90 271-380 8-97 (126)
117 3uq3_A Heat shock protein STI1 98.1 0.00022 7.4E-09 63.3 18.3 157 191-379 13-188 (258)
118 3dpl_R Ring-box protein 1; ubi 98.0 1.8E-06 6.1E-11 68.7 2.9 44 88-131 36-100 (106)
119 4ga2_A E3 SUMO-protein ligase 98.0 2.6E-05 9E-10 65.2 10.1 117 229-376 29-146 (150)
120 4eqf_A PEX5-related protein; a 98.0 0.00013 4.5E-09 69.1 16.1 162 186-378 68-261 (365)
121 4g1t_A Interferon-induced prot 98.0 4.4E-05 1.5E-09 75.1 12.9 97 276-377 51-149 (472)
122 2vyi_A SGTA protein; chaperone 98.0 0.00026 9.1E-09 55.5 15.1 120 229-379 10-129 (131)
123 3rkv_A Putative peptidylprolyl 98.0 0.00011 3.7E-09 61.6 13.4 101 274-380 9-113 (162)
124 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 7.9E-05 2.7E-09 74.3 14.5 135 226-380 263-401 (457)
125 4eqf_A PEX5-related protein; a 98.0 6.2E-05 2.1E-09 71.4 13.2 83 277-379 214-296 (365)
126 3gyz_A Chaperone protein IPGC; 98.0 4E-05 1.4E-09 64.7 10.3 103 226-353 31-133 (151)
127 2pl2_A Hypothetical conserved 98.0 4.7E-05 1.6E-09 67.6 10.8 145 190-380 12-167 (217)
128 2vgx_A Chaperone SYCD; alterna 97.9 0.00011 3.7E-09 61.3 12.1 125 228-380 18-142 (148)
129 2lni_A Stress-induced-phosphop 97.9 0.00015 5.1E-09 57.4 12.5 117 231-378 16-132 (133)
130 1elr_A TPR2A-domain of HOP; HO 97.9 0.00072 2.5E-08 53.0 16.3 123 232-379 5-127 (131)
131 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.8E-09 70.5 14.4 132 231-382 223-359 (370)
132 2bay_A PRE-mRNA splicing facto 97.9 3.8E-06 1.3E-10 59.7 2.1 43 89-132 3-50 (61)
133 1fch_A Peroxisomal targeting s 97.9 0.00026 9E-09 66.7 15.3 84 277-380 218-301 (368)
134 1fch_A Peroxisomal targeting s 97.9 0.0002 6.8E-09 67.5 14.5 151 193-380 191-346 (368)
135 3uq3_A Heat shock protein STI1 97.8 0.00029 9.8E-09 62.5 14.0 130 231-379 5-154 (258)
136 2xcb_A PCRH, regulatory protei 97.8 0.00038 1.3E-08 57.0 13.6 125 228-380 15-139 (142)
137 3hym_B Cell division cycle pro 97.8 8.3E-05 2.8E-09 68.7 10.6 126 233-380 161-286 (330)
138 4abn_A Tetratricopeptide repea 97.8 0.00013 4.6E-09 72.9 12.3 121 232-380 171-308 (474)
139 3urz_A Uncharacterized protein 97.8 0.0011 3.8E-08 58.1 17.0 119 237-379 10-137 (208)
140 3urz_A Uncharacterized protein 97.8 0.0002 6.9E-09 62.9 12.0 92 189-305 10-117 (208)
141 2vq2_A PILW, putative fimbrial 97.8 0.00042 1.4E-08 60.0 14.0 17 191-207 16-32 (225)
142 1w3b_A UDP-N-acetylglucosamine 97.8 0.00011 3.8E-09 70.3 11.0 81 279-379 104-184 (388)
143 4a0k_B E3 ubiquitin-protein li 97.7 4.9E-06 1.7E-10 67.2 0.4 44 88-131 47-111 (117)
144 1na0_A Designed protein CTPR3; 97.7 0.0012 4.2E-08 51.0 14.6 114 233-377 11-124 (125)
145 2ho1_A Type 4 fimbrial biogene 97.7 0.00047 1.6E-08 61.4 13.4 89 190-303 44-132 (252)
146 3vtx_A MAMA; tetratricopeptide 97.7 0.00016 5.4E-09 61.5 9.8 125 190-353 46-170 (184)
147 1hz4_A MALT regulatory protein 97.7 0.0011 3.9E-08 62.9 16.6 135 231-379 14-150 (373)
148 3q49_B STIP1 homology and U bo 97.7 0.002 6.9E-08 51.4 15.7 122 232-379 10-131 (137)
149 2q7f_A YRRB protein; TPR, prot 97.7 0.00035 1.2E-08 61.5 12.1 143 192-379 66-208 (243)
150 3upv_A Heat shock protein STI1 97.7 0.00042 1.5E-08 55.1 11.4 85 276-380 4-88 (126)
151 3as5_A MAMA; tetratricopeptide 97.7 0.00047 1.6E-08 57.5 12.0 143 192-379 17-159 (186)
152 1na3_A Designed protein CTPR2; 97.7 0.00062 2.1E-08 50.2 11.4 83 276-378 9-91 (91)
153 3u4t_A TPR repeat-containing p 97.7 0.0001 3.4E-09 66.5 8.1 127 189-351 9-135 (272)
154 2vsy_A XCC0866; transferase, g 97.7 0.00018 6.2E-09 73.3 10.7 116 231-377 23-138 (568)
155 1w3b_A UDP-N-acetylglucosamine 97.6 0.00038 1.3E-08 66.6 12.3 82 279-380 172-253 (388)
156 3qky_A Outer membrane assembly 97.6 0.0012 4.2E-08 59.5 14.9 163 187-378 19-199 (261)
157 4abn_A Tetratricopeptide repea 97.6 0.00012 4.2E-09 73.2 8.7 145 190-380 109-274 (474)
158 3gyz_A Chaperone protein IPGC; 97.6 0.00059 2E-08 57.3 11.7 86 275-380 35-120 (151)
159 2h6f_A Protein farnesyltransfe 97.6 9.7E-05 3.3E-09 72.1 7.4 139 193-376 107-246 (382)
160 3hym_B Cell division cycle pro 97.6 0.00023 8E-09 65.6 9.7 122 234-380 128-252 (330)
161 1a17_A Serine/threonine protei 97.6 0.0028 9.7E-08 52.0 15.5 100 229-353 11-110 (166)
162 2y4t_A DNAJ homolog subfamily 97.6 0.0023 7.9E-08 62.0 17.1 127 232-378 212-343 (450)
163 4b4t_Q 26S proteasome regulato 97.6 0.00055 1.9E-08 66.3 12.6 146 192-358 64-209 (434)
164 1wao_1 Serine/threonine protei 97.6 0.00041 1.4E-08 69.6 11.9 111 232-373 7-117 (477)
165 2xpi_A Anaphase-promoting comp 97.6 0.00066 2.2E-08 68.6 13.2 119 236-379 412-531 (597)
166 3sz7_A HSC70 cochaperone (SGT) 97.5 0.00063 2.2E-08 56.9 11.0 86 275-380 10-95 (164)
167 2xpi_A Anaphase-promoting comp 97.5 0.00093 3.2E-08 67.5 14.3 118 233-374 477-594 (597)
168 2l6j_A TPR repeat-containing p 97.5 0.00075 2.6E-08 51.7 10.5 83 277-379 5-93 (111)
169 3ieg_A DNAJ homolog subfamily 97.5 0.0019 6.5E-08 59.9 15.1 128 232-379 189-321 (359)
170 3cv0_A Peroxisome targeting si 97.5 0.0039 1.3E-07 57.1 16.8 154 187-378 25-220 (327)
171 1elw_A TPR1-domain of HOP; HOP 97.5 0.0026 8.8E-08 48.6 13.2 110 233-373 6-115 (118)
172 1hh8_A P67PHOX, NCF-2, neutrop 97.5 0.00042 1.4E-08 60.1 9.5 117 235-379 10-136 (213)
173 2vq2_A PILW, putative fimbrial 97.5 0.0015 5.3E-08 56.3 13.1 122 230-380 41-163 (225)
174 2q7f_A YRRB protein; TPR, prot 97.5 0.00055 1.9E-08 60.2 10.1 143 192-379 32-174 (243)
175 2h6f_A Protein farnesyltransfe 97.5 0.00071 2.4E-08 65.9 11.6 121 228-379 94-215 (382)
176 2y4t_A DNAJ homolog subfamily 97.5 0.0023 7.8E-08 62.0 15.1 115 238-379 264-378 (450)
177 2dba_A Smooth muscle cell asso 97.4 0.0025 8.4E-08 51.3 13.0 113 233-373 30-142 (148)
178 3ieg_A DNAJ homolog subfamily 97.4 0.0025 8.6E-08 59.0 14.7 116 238-380 241-356 (359)
179 3ma5_A Tetratricopeptide repea 97.4 0.0019 6.4E-08 49.6 11.5 67 277-357 8-74 (100)
180 3fp2_A TPR repeat-containing p 97.4 0.0018 6E-08 64.3 14.3 64 290-353 209-272 (537)
181 1hh8_A P67PHOX, NCF-2, neutrop 97.4 0.00093 3.2E-08 57.9 10.6 135 191-353 14-150 (213)
182 3cv0_A Peroxisome targeting si 97.4 0.001 3.5E-08 61.1 11.3 124 232-380 173-302 (327)
183 2d8s_A Cellular modulator of i 97.4 0.00012 4E-09 54.9 3.7 45 88-132 14-70 (80)
184 3fp2_A TPR repeat-containing p 97.4 0.0024 8.3E-08 63.3 14.5 164 197-380 209-394 (537)
185 2fo7_A Synthetic consensus TPR 97.4 0.0046 1.6E-07 48.1 13.3 114 234-378 4-117 (136)
186 2vgx_A Chaperone SYCD; alterna 97.4 0.0023 7.9E-08 53.0 12.0 85 276-380 21-105 (148)
187 3vk6_A E3 ubiquitin-protein li 97.4 7.2E-05 2.5E-09 57.6 2.3 43 90-132 2-49 (101)
188 2ho1_A Type 4 fimbrial biogene 97.3 0.0019 6.4E-08 57.3 12.1 64 231-305 37-100 (252)
189 3mkr_A Coatomer subunit epsilo 97.3 0.0056 1.9E-07 56.8 15.7 118 234-380 133-250 (291)
190 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00065 2.2E-08 64.8 9.3 128 228-375 176-309 (338)
191 1ihg_A Cyclophilin 40; ppiase 97.3 0.0012 4.1E-08 63.9 11.1 103 272-380 219-323 (370)
192 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0036 1.2E-07 48.7 11.9 79 280-371 9-87 (104)
193 1p5q_A FKBP52, FK506-binding p 97.3 0.00092 3.2E-08 63.6 10.2 103 272-380 143-246 (336)
194 3q49_B STIP1 homology and U bo 97.3 0.0023 7.9E-08 51.0 11.0 85 276-380 9-93 (137)
195 2kat_A Uncharacterized protein 97.3 0.0039 1.3E-07 48.6 12.1 89 277-383 20-108 (115)
196 3as5_A MAMA; tetratricopeptide 97.3 0.0028 9.4E-08 52.6 11.9 127 190-355 49-175 (186)
197 3k9i_A BH0479 protein; putativ 97.3 0.0014 4.7E-08 51.6 9.3 89 243-353 2-90 (117)
198 3u4t_A TPR repeat-containing p 97.3 0.0029 9.9E-08 56.7 12.4 120 233-380 5-124 (272)
199 2fo7_A Synthetic consensus TPR 97.2 0.0026 8.9E-08 49.6 10.6 123 192-353 10-132 (136)
200 1elr_A TPR2A-domain of HOP; HO 97.2 0.0021 7.2E-08 50.2 9.8 90 276-379 4-94 (131)
201 3qou_A Protein YBBN; thioredox 97.2 0.0041 1.4E-07 57.5 13.0 125 232-380 118-271 (287)
202 1hxi_A PEX5, peroxisome target 97.2 0.0041 1.4E-07 49.5 11.3 82 279-380 20-101 (121)
203 2xev_A YBGF; tetratricopeptide 97.2 0.0079 2.7E-07 47.2 12.8 101 234-353 5-105 (129)
204 2xcb_A PCRH, regulatory protei 97.2 0.0053 1.8E-07 49.9 12.0 85 276-380 18-102 (142)
205 2pzi_A Probable serine/threoni 97.1 0.00085 2.9E-08 70.3 8.6 160 192-377 400-581 (681)
206 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.0027 9.2E-08 56.8 10.9 100 229-353 41-140 (275)
207 2fbn_A 70 kDa peptidylprolyl i 97.1 0.0069 2.4E-07 52.1 13.2 99 272-380 34-138 (198)
208 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.0037 1.3E-07 55.9 11.8 111 243-380 17-127 (275)
209 1ouv_A Conserved hypothetical 97.1 0.0052 1.8E-07 55.5 12.8 84 192-304 15-106 (273)
210 1hxi_A PEX5, peroxisome target 97.1 0.0013 4.4E-08 52.6 7.7 93 236-353 22-114 (121)
211 3qky_A Outer membrane assembly 97.1 0.011 3.6E-07 53.2 14.8 163 189-383 58-251 (261)
212 1a17_A Serine/threonine protei 97.1 0.0047 1.6E-07 50.6 11.4 87 274-380 11-97 (166)
213 2gw1_A Mitochondrial precursor 97.1 0.002 6.7E-08 63.4 10.5 122 233-379 340-464 (514)
214 2vyi_A SGTA protein; chaperone 97.1 0.0072 2.5E-07 46.9 11.9 87 273-379 9-95 (131)
215 2gw1_A Mitochondrial precursor 97.0 0.012 4E-07 57.7 15.4 76 278-353 188-266 (514)
216 1ouv_A Conserved hypothetical 97.0 0.0046 1.6E-07 55.9 11.5 93 231-352 6-106 (273)
217 1elw_A TPR1-domain of HOP; HOP 97.0 0.0044 1.5E-07 47.3 9.8 83 277-379 5-87 (118)
218 2lni_A Stress-induced-phosphop 97.0 0.0027 9.4E-08 49.8 8.7 84 276-379 16-99 (133)
219 2dba_A Smooth muscle cell asso 97.0 0.0035 1.2E-07 50.3 9.5 87 277-380 29-115 (148)
220 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.0025 8.6E-08 63.3 10.0 103 272-380 264-367 (457)
221 2kck_A TPR repeat; tetratricop 97.0 0.0015 5.1E-08 49.6 6.7 97 233-352 8-105 (112)
222 2vsy_A XCC0866; transferase, g 97.0 0.0025 8.5E-08 64.7 10.1 127 190-355 30-159 (568)
223 2pzi_A Probable serine/threoni 97.0 0.0013 4.3E-08 68.9 7.9 162 192-384 442-627 (681)
224 2c2l_A CHIP, carboxy terminus 97.0 0.0025 8.6E-08 58.8 9.0 81 278-378 6-86 (281)
225 2ct0_A Non-SMC element 1 homol 96.9 0.00079 2.7E-08 49.5 4.2 44 88-131 14-63 (74)
226 1na0_A Designed protein CTPR3; 96.9 0.01 3.5E-07 45.5 10.9 83 277-379 10-92 (125)
227 2r5s_A Uncharacterized protein 96.8 0.023 7.7E-07 47.9 13.5 138 190-353 13-173 (176)
228 2kck_A TPR repeat; tetratricop 96.8 0.0025 8.7E-08 48.3 6.7 79 279-377 9-89 (112)
229 3k9i_A BH0479 protein; putativ 96.8 0.002 6.7E-08 50.7 5.8 75 289-380 3-77 (117)
230 2kc7_A BFR218_protein; tetratr 96.7 0.0086 2.9E-07 45.0 9.0 81 281-381 5-88 (99)
231 2e2e_A Formate-dependent nitri 96.7 0.015 5.3E-07 48.6 11.3 97 232-353 45-144 (177)
232 3qou_A Protein YBBN; thioredox 96.7 0.009 3.1E-07 55.1 10.4 138 191-354 125-285 (287)
233 2xev_A YBGF; tetratricopeptide 96.6 0.018 6.2E-07 45.1 10.7 85 279-380 5-92 (129)
234 2if4_A ATFKBP42; FKBP-like, al 96.6 0.0073 2.5E-07 57.4 9.2 101 274-380 177-280 (338)
235 2yhc_A BAMD, UPF0169 lipoprote 96.5 0.072 2.5E-06 46.7 14.5 162 190-380 11-200 (225)
236 2r5s_A Uncharacterized protein 96.5 0.02 6.7E-07 48.3 10.4 127 237-380 12-160 (176)
237 1wao_1 Serine/threonine protei 96.3 0.0021 7.2E-08 64.4 3.9 83 278-380 8-90 (477)
238 2e2e_A Formate-dependent nitri 96.3 0.023 7.9E-07 47.5 10.0 106 243-379 22-130 (177)
239 3mkr_A Coatomer subunit epsilo 96.3 0.035 1.2E-06 51.3 11.7 114 233-380 103-216 (291)
240 3rjv_A Putative SEL1 repeat pr 96.1 0.045 1.5E-06 47.8 11.3 136 192-376 27-174 (212)
241 2yhc_A BAMD, UPF0169 lipoprote 96.1 0.045 1.5E-06 48.0 11.1 64 277-351 148-211 (225)
242 1zu2_A Mitochondrial import re 96.0 0.22 7.6E-06 41.9 14.2 96 263-372 30-133 (158)
243 2l6j_A TPR repeat-containing p 95.8 0.012 4E-07 44.8 5.3 97 232-347 5-101 (111)
244 1zu2_A Mitochondrial import re 95.6 0.061 2.1E-06 45.4 9.2 76 297-379 16-95 (158)
245 4f3v_A ESX-1 secretion system 95.6 0.06 2.1E-06 49.9 9.9 128 190-353 109-237 (282)
246 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0048 1.6E-07 48.0 1.7 31 88-119 2-35 (101)
247 3k1l_B Fancl; UBC, ring, RWD, 95.2 0.0051 1.8E-07 58.1 1.2 45 88-132 307-373 (381)
248 3rjv_A Putative SEL1 repeat pr 95.0 0.066 2.3E-06 46.7 7.8 91 232-352 19-117 (212)
249 1vyx_A ORF K3, K3RING; zinc-bi 94.9 0.02 6.7E-07 40.1 3.3 43 88-131 5-58 (60)
250 3ma5_A Tetratricopeptide repea 94.9 0.065 2.2E-06 40.6 6.7 66 232-308 8-73 (100)
251 1na3_A Designed protein CTPR2; 94.7 0.23 8E-06 35.7 9.2 82 232-338 10-91 (91)
252 2ond_A Cleavage stimulation fa 94.5 1.2 4.2E-05 40.7 15.7 110 233-352 101-231 (308)
253 2kat_A Uncharacterized protein 94.4 0.14 4.7E-06 39.4 7.6 51 324-380 19-69 (115)
254 2xm6_A Protein corresponding t 94.0 0.54 1.9E-05 46.2 13.0 26 326-351 185-214 (490)
255 1xi4_A Clathrin heavy chain; a 93.7 0.46 1.6E-05 53.3 12.4 98 238-354 1056-1164(1630)
256 1klx_A Cysteine rich protein B 93.2 0.37 1.3E-05 38.9 8.5 88 237-353 31-126 (138)
257 2xm6_A Protein corresponding t 93.0 0.83 2.8E-05 44.8 12.2 62 277-354 364-433 (490)
258 1xi4_A Clathrin heavy chain; a 92.9 1.4 4.8E-05 49.5 14.6 144 190-351 1056-1222(1630)
259 2ond_A Cleavage stimulation fa 92.2 4.1 0.00014 37.0 15.2 107 248-377 33-147 (308)
260 3ffl_A Anaphase-promoting comp 91.4 4.7 0.00016 34.0 13.1 101 243-346 32-144 (167)
261 2v5f_A Prolyl 4-hydroxylase su 91.4 1.5 5.2E-05 33.2 9.5 66 236-305 10-75 (104)
262 3ffl_A Anaphase-promoting comp 91.3 3.5 0.00012 34.7 12.2 88 288-380 32-138 (167)
263 3bee_A Putative YFRE protein; 90.8 3.7 0.00013 30.6 11.1 60 279-352 9-71 (93)
264 1b89_A Protein (clathrin heavy 90.6 0.4 1.4E-05 47.3 6.6 97 233-351 124-234 (449)
265 3m62_A Ubiquitin conjugation f 90.3 0.24 8.2E-06 53.0 5.0 64 88-152 890-960 (968)
266 4f3v_A ESX-1 secretion system 89.9 1.3 4.5E-05 40.8 9.2 87 278-380 137-224 (282)
267 1b89_A Protein (clathrin heavy 89.7 0.15 5.2E-06 50.3 2.7 54 278-353 124-177 (449)
268 2w2u_A Hypothetical P60 katani 89.4 2 6.9E-05 31.8 8.1 37 321-357 16-52 (83)
269 1klx_A Cysteine rich protein B 89.3 1.3 4.6E-05 35.4 7.9 71 282-376 31-105 (138)
270 3nw0_A Non-structural maintena 88.1 0.29 1E-05 44.1 3.3 44 89-132 180-229 (238)
271 3e4b_A ALGK; tetratricopeptide 87.9 2.5 8.5E-05 41.2 10.3 45 246-304 232-279 (452)
272 2v6y_A AAA family ATPase, P60 87.7 3.7 0.00013 30.3 8.6 59 322-380 9-71 (83)
273 2ooe_A Cleavage stimulation fa 87.2 3.3 0.00011 40.9 10.8 62 233-304 323-384 (530)
274 2kc7_A BFR218_protein; tetratr 85.9 1.8 6.1E-05 31.6 6.2 46 329-380 5-51 (99)
275 1wfd_A Hypothetical protein 15 85.4 6.3 0.00022 29.7 9.1 37 321-357 12-48 (93)
276 2ooe_A Cleavage stimulation fa 84.1 4.6 0.00016 39.8 10.1 28 278-305 323-350 (530)
277 2csv_A Tripartite motif protei 83.7 0.036 1.2E-06 40.2 -4.3 41 226-267 20-70 (72)
278 3e4b_A ALGK; tetratricopeptide 83.3 4.3 0.00015 39.5 9.3 56 279-351 216-278 (452)
279 4a5x_A MITD1, MIT domain-conta 83.2 8 0.00027 28.7 8.6 40 323-362 15-55 (86)
280 2v6x_A Vacuolar protein sortin 82.5 10 0.00034 27.9 9.0 37 321-357 10-46 (85)
281 3i2d_A E3 SUMO-protein ligase 81.8 0.99 3.4E-05 43.1 3.8 58 89-146 249-316 (371)
282 2cpt_A SKD1 protein, vacuolar 80.9 9.8 0.00034 30.0 8.8 38 320-357 14-51 (117)
283 3ly7_A Transcriptional activat 79.7 7.9 0.00027 37.0 9.3 91 278-383 279-371 (372)
284 4fo9_A E3 SUMO-protein ligase 79.0 1.4 4.9E-05 41.8 3.8 57 89-145 215-281 (360)
285 3txn_A 26S proteasome regulato 78.2 13 0.00043 35.9 10.4 86 278-371 101-186 (394)
286 2rpa_A Katanin P60 ATPase-cont 78.1 8.3 0.00028 28.1 6.9 29 329-357 17-45 (78)
287 2ffw_A Midline-1; B-BOX, ring 77.4 0.62 2.1E-05 34.1 0.7 32 171-218 28-66 (78)
288 1pc2_A Mitochondria fission pr 76.8 5.6 0.00019 33.0 6.5 51 291-353 50-100 (152)
289 1vh6_A Flagellar protein FLIS; 73.6 7.1 0.00024 32.1 6.2 62 321-383 30-93 (145)
290 3iqc_A FLIS, flagellar protein 73.0 15 0.00052 29.5 8.0 55 329-383 41-98 (131)
291 3mkq_A Coatomer beta'-subunit; 69.5 29 0.00099 35.6 11.4 26 278-303 683-708 (814)
292 1orj_A Flagellar protein FLIS; 69.4 23 0.00078 28.4 8.2 53 331-383 36-95 (130)
293 2o8p_A 14-3-3 domain containin 66.7 68 0.0023 28.2 11.6 89 289-382 138-226 (227)
294 2ko5_A Ring finger protein Z; 66.5 15 0.00051 27.7 5.9 42 88-132 27-73 (99)
295 3mv2_B Coatomer subunit epsilo 66.4 81 0.0028 29.1 15.5 74 291-379 193-270 (310)
296 3mkq_A Coatomer beta'-subunit; 65.3 59 0.002 33.2 12.8 26 232-257 682-707 (814)
297 2jne_A Hypothetical protein YF 64.2 0.84 2.9E-05 34.6 -1.2 40 89-133 32-74 (101)
298 3txn_A 26S proteasome regulato 63.2 89 0.003 29.9 12.6 107 236-355 104-212 (394)
299 2d8u_A Ubiquitin ligase TRIM63 61.5 0.024 8.1E-07 40.0 -9.9 40 226-265 10-60 (64)
300 2cs3_A Protein C14ORF4, MY039 60.2 14 0.00047 26.9 4.6 33 88-120 14-49 (93)
301 1ya0_A SMG-7 transcript varian 59.3 35 0.0012 33.8 9.2 67 272-352 148-214 (497)
302 3u64_A Protein TP_0956; tetrat 54.8 16 0.00056 33.7 5.4 63 277-352 200-268 (301)
303 2cpt_A SKD1 protein, vacuolar 51.7 83 0.0029 24.5 8.9 28 286-313 28-55 (117)
304 3dra_A Protein farnesyltransfe 48.2 97 0.0033 28.3 9.8 72 279-350 183-284 (306)
305 2lbm_A Transcriptional regulat 47.5 32 0.0011 28.0 5.5 39 89-128 63-116 (142)
306 1deq_A Fibrinogen (alpha chain 46.5 1.1E+02 0.0039 28.8 9.7 37 270-306 85-121 (390)
307 2jrp_A Putative cytoplasmic pr 44.3 2.9 9.9E-05 30.7 -1.1 38 90-132 3-43 (81)
308 1dce_A Protein (RAB geranylger 44.0 74 0.0025 31.9 8.9 80 278-377 109-191 (567)
309 2did_A Tripartite motif protei 42.4 0.16 5.4E-06 34.2 -7.8 29 226-254 10-48 (53)
310 2dja_A Midline-2; tripartite m 42.4 0.047 1.6E-06 40.7 -11.6 44 226-269 20-74 (84)
311 2pv0_B DNA (cytosine-5)-methyl 41.7 29 0.001 33.2 5.0 58 89-147 93-168 (386)
312 2lri_C Autoimmune regulator; Z 41.0 37 0.0013 23.6 4.3 40 90-130 13-60 (66)
313 2xqn_T Testin, TESS; metal-bin 40.8 14 0.00049 28.9 2.4 44 89-132 30-75 (126)
314 3mkq_B Coatomer subunit alpha; 40.6 1.6E+02 0.0056 24.7 9.9 47 192-257 14-60 (177)
315 2cup_A Skeletal muscle LIM-pro 39.9 15 0.00051 27.5 2.3 43 89-131 33-77 (101)
316 2d8v_A Zinc finger FYVE domain 39.9 7.8 0.00027 27.1 0.6 31 89-121 8-39 (67)
317 3bee_A Putative YFRE protein; 38.8 32 0.0011 25.3 4.0 46 248-304 26-71 (93)
318 2jmo_A Parkin; IBR, E3 ligase, 38.4 8.3 0.00029 28.1 0.6 21 107-128 55-75 (80)
319 2dl1_A Spartin; SPG20, MIT, st 38.3 1.3E+02 0.0045 23.4 7.4 21 337-357 35-55 (116)
320 3mv2_B Coatomer subunit epsilo 37.6 1.8E+02 0.0063 26.6 9.8 60 278-349 102-161 (310)
321 1fxk_C Protein (prefoldin); ar 37.4 9.5 0.00032 30.5 0.8 108 272-381 7-129 (133)
322 1dce_A Protein (RAB geranylger 36.4 3.3E+02 0.011 27.0 13.7 112 243-378 40-157 (567)
323 2wb7_A PT26-6P; extra chromoso 35.7 2.3E+02 0.008 27.9 10.3 41 341-381 449-491 (526)
324 3u64_A Protein TP_0956; tetrat 35.1 1E+02 0.0034 28.4 7.4 32 324-355 199-235 (301)
325 1wil_A KIAA1045 protein; ring 34.7 40 0.0014 24.8 3.6 31 88-120 14-47 (89)
326 1nzn_A CGI-135 protein, fissio 34.6 83 0.0028 24.9 6.0 46 301-351 56-101 (126)
327 2yrg_A Tripartite motif-contai 34.4 0.23 8E-06 34.3 -8.1 28 226-253 16-53 (59)
328 2yvr_A Transcription intermedi 33.8 0.38 1.3E-05 31.8 -6.9 29 226-255 8-47 (50)
329 2ct7_A Ring finger protein 31; 31.5 8.5 0.00029 28.4 -0.4 30 91-120 27-61 (86)
330 3a1b_A DNA (cytosine-5)-methyl 30.6 55 0.0019 27.1 4.4 40 89-129 79-134 (159)
331 3ghg_A Fibrinogen alpha chain; 30.4 42 0.0014 33.2 4.1 17 341-357 172-188 (562)
332 3mkq_B Coatomer subunit alpha; 30.4 1.3E+02 0.0045 25.3 6.8 28 277-304 35-62 (177)
333 1fre_A Nuclear factor XNF7; zi 29.7 0.45 1.5E-05 30.1 -6.8 22 226-247 5-34 (42)
334 1weo_A Cellulose synthase, cat 29.5 39 0.0013 25.1 2.9 43 90-132 17-70 (93)
335 4b4t_R RPN7, 26S proteasome re 29.4 41 0.0014 32.4 4.1 67 278-355 133-199 (429)
336 1z60_A TFIIH basal transcripti 29.3 44 0.0015 22.8 3.0 37 90-126 16-58 (59)
337 2egm_A Tripartite motif-contai 28.9 0.71 2.4E-05 31.5 -6.3 14 226-239 20-33 (57)
338 1o9d_A 14-3-3-like protein C; 28.9 3.1E+02 0.011 24.4 10.4 61 292-357 151-215 (260)
339 1y8m_A FIS1; mitochondria, unk 28.6 1.8E+02 0.0063 23.5 7.1 42 301-348 60-101 (144)
340 4g26_A Pentatricopeptide repea 28.1 4.2E+02 0.014 25.7 13.2 85 243-350 117-201 (501)
341 2gmg_A Hypothetical protein PF 27.9 14 0.00048 28.4 0.3 29 100-129 65-93 (105)
342 4e6h_A MRNA 3'-END-processing 27.5 5.1E+02 0.017 26.4 13.5 96 233-352 436-532 (679)
343 2l5u_A Chromodomain-helicase-D 27.1 46 0.0016 22.6 2.9 40 88-128 10-57 (61)
344 3efz_A 14-3-3 protein; 14-3-3, 26.7 1.6E+02 0.0055 26.5 7.1 82 292-382 168-253 (268)
345 2v6y_A AAA family ATPase, P60 26.6 1.7E+02 0.0059 21.0 6.1 30 286-315 21-50 (83)
346 3ddt_A E3 ubiquitin-protein li 26.5 0.87 3E-05 29.7 -6.0 27 226-252 8-45 (48)
347 4e6h_A MRNA 3'-END-processing 26.0 2.5E+02 0.0086 28.7 9.5 73 281-353 383-463 (679)
348 3mjh_B Early endosome antigen 26.0 11 0.00038 22.7 -0.5 12 89-100 5-16 (34)
349 2w2u_A Hypothetical P60 katani 25.9 1.9E+02 0.0064 20.9 8.4 30 286-315 29-58 (83)
350 3o48_A Mitochondria fission 1 25.2 1.5E+02 0.0053 23.6 6.0 26 323-348 77-102 (134)
351 1wd2_A Ariadne-1 protein homol 24.4 14 0.00049 25.3 -0.2 31 90-120 7-44 (60)
352 2ymb_A MITD1, MIT domain-conta 24.3 16 0.00055 32.9 0.0 34 324-357 23-56 (257)
353 1pc2_A Mitochondria fission pr 23.4 1.1E+02 0.0036 25.1 4.9 49 248-305 52-100 (152)
354 4g26_A Pentatricopeptide repea 23.2 3.7E+02 0.013 26.1 9.8 61 278-351 107-167 (501)
355 1zbd_B Rabphilin-3A; G protein 23.2 21 0.00072 28.8 0.5 31 88-118 54-88 (134)
356 1joc_A EEA1, early endosomal a 23.1 30 0.001 27.4 1.4 31 89-119 69-102 (125)
357 2fiy_A Protein FDHE homolog; F 22.9 14 0.00048 34.3 -0.7 41 88-129 181-231 (309)
358 2a9u_A Ubiquitin carboxyl-term 22.3 1.3E+02 0.0045 24.3 5.2 43 321-363 39-81 (144)
359 1weu_A Inhibitor of growth fam 22.1 2.3E+02 0.0079 20.9 6.1 39 88-129 35-85 (91)
360 2rpa_A Katanin P60 ATPase-cont 21.8 1.6E+02 0.0056 21.1 5.0 29 286-314 22-50 (78)
361 3plt_A Sphingolipid long chain 21.6 4.1E+02 0.014 23.3 11.3 61 322-384 63-127 (234)
362 3ghg_A Fibrinogen alpha chain; 21.4 2.6E+02 0.0089 27.7 7.8 11 373-383 177-187 (562)
363 1x4l_A Skeletal muscle LIM-pro 21.4 50 0.0017 22.6 2.2 32 89-120 35-66 (72)
364 4g9i_A Hydrogenase maturation 21.4 43 0.0015 35.2 2.6 44 88-131 105-189 (772)
365 3ql9_A Transcriptional regulat 20.8 70 0.0024 25.5 3.1 39 89-128 57-110 (129)
366 3t7l_A Zinc finger FYVE domain 20.4 39 0.0013 25.0 1.5 32 88-119 19-53 (90)
367 2zet_C Melanophilin; complex, 20.2 36 0.0012 28.1 1.3 41 88-128 67-116 (153)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=101.17 Aligned_cols=62 Identities=27% Similarity=0.676 Sum_probs=55.4
Q ss_pred CCeeccccccccccCceecc-CCCcchHHhHHhcC------CCCCCCCCccc---chhhhHHHHHHHHHHhhc
Q 016258 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIEK---IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~~---~~~n~~l~~~v~~~~~~~ 150 (392)
+.+.|+||++++. +|++++ |||+||..||..|+ .||.|+..+.. +.+|..+.++++.++...
T Consensus 12 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 12 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp TTTEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred cCCCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 5799999999998 999999 99999999999884 69999999742 899999999999998643
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=1.9e-12 Score=97.74 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=55.2
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..|+++++.+...
T Consensus 7 ~~~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 7 EYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp SSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred ccCCCCCcccccc-CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 5799999999988 99999999999999999983 49999999875 88999999999999863
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=6.8e-12 Score=96.42 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=56.6
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~ 150 (392)
+.|.|+||++++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..|+++++.+....
T Consensus 13 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 13 DEFRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hheECcccCchhc-CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 5799999999999 99999999999999999995 59999999876 999999999999998643
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.23 E-value=5.3e-12 Score=99.98 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
+.|.||||++++. +|++++|||+||+.||..|+ .||.|+.++.. +.+|..|+++++.+...
T Consensus 28 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 28 DEFRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp TTTBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred HhhCCcCccCccc-CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 5799999999999 99999999999999999996 39999999876 99999999999999864
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.23 E-value=2.8e-11 Score=95.48 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=57.0
Q ss_pred CCeeccccccccccCceeccCC-CcchHHhHHhcCC----CCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258 88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~~----CP~C~~~~~~--~~~n~~l~~~v~~~~~~~ 150 (392)
++|.||||++++. +|++++|| |+||+.||..|+. ||.|+.++.. +.+|..|+++|+.+....
T Consensus 21 ~~~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 21 DEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp TTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred HhcCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 5799999999999 99999999 9999999999973 9999999886 899999999999998654
No 6
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=4.5e-12 Score=103.52 Aligned_cols=63 Identities=22% Similarity=0.570 Sum_probs=56.1
Q ss_pred CCeeccccccccccCceec-cCCCcchHHhHHhcC--CCCCCCCCccc--chhhhHHHHHHHHHHhhch
Q 016258 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK--DCPLCGADIEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~--~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~ 151 (392)
+.+.|+||++++. +|+++ +|||+||..||..|+ .||.|+..+.. +.+|..+.++++.+.....
T Consensus 21 ~~~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 21 KLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 4799999999998 89998 999999999999996 59999999865 8899999999999876443
No 7
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.21 E-value=1.7e-10 Score=116.82 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=114.0
Q ss_pred hhhhcchhHHHhHHHHHHHHHHh-CCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016258 241 CRAMGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 241 C~~~gdhh~a~~~~e~~~~~~~~-L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~ 319 (392)
.+.+|++.+|+++++++++...+ |++.++. +..++++|+.++..+|+|++|+.+|+++|++++..+.....
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---- 390 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY----VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA---- 390 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH----
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH----
Confidence 34789999999999999777654 5555554 56789999999999999999999999999999998876553
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+++.++++||.+|..+|++++|+.+|++|++|++.. .+||..+.++.+++..+..++..
T Consensus 391 --~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 391 --QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998 89999999999999888766653
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=102.11 Aligned_cols=61 Identities=33% Similarity=0.805 Sum_probs=55.0
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.++++.+...
T Consensus 51 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred cCCCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4689999999998 99999999999999999884 69999999876 89999999999988753
No 9
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.16 E-value=2.7e-10 Score=113.56 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=103.2
Q ss_pred hhcchhHHHhHHHHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016258 243 AMGDADAAVAYFADSVEFLM-KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~-~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~ 321 (392)
..|++.+|+++++++++... .|++.++. +..++++|+.++..+|+|++|+.+|+++|++++..+.....
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------ 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY----MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL------ 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh------
Confidence 34677899999999977665 46665554 56689999999999999999999999999999998876554
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHH
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRL 371 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~ 371 (392)
+++.++++||.+|..+|++++|+.+|++|++|++.. .+||..+.+.+++.
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 899999999999999999999999999999999998 88898887777664
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=3.7e-11 Score=94.98 Aligned_cols=64 Identities=27% Similarity=0.647 Sum_probs=56.4
Q ss_pred CCeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhchh
Q 016258 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR 152 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~~ 152 (392)
+.+.|+||++.+. +|+++ +|||+||..||..|+ .||.|+..+.. +.+|..+.++++.++.....
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 21 DLLRCGICFEYFN-IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCCCcccCChhhC-CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence 4689999999998 88887 899999999999984 59999999886 88999999999999875443
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=96.22 Aligned_cols=61 Identities=25% Similarity=0.551 Sum_probs=53.8
Q ss_pred CCeeccccccccccCcee-ccCCCcchHHhHHhc-----CCCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRF-----KDCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
+.+.|+||++++. +|++ ++|||+||..||..| ..||.||..+.. +..+..+.++++.+...
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKLR-DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCcccc-CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4799999999998 8998 999999999999998 369999999876 77888888888887654
No 12
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=94.00 Aligned_cols=63 Identities=22% Similarity=0.447 Sum_probs=54.6
Q ss_pred CCeeccccccccccCceecc-CCCcchHHhHHhcC----------CCCC--CCCC-ccc--chhhhHHHHHHHHHHhhch
Q 016258 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK----------DCPL--CGAD-IEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~----------~CP~--C~~~-~~~--~~~n~~l~~~v~~~~~~~~ 151 (392)
..|.||||++++. +|++++ |||+||+.||..|+ .||. |+.. +.. +.+|..|+++|+.++....
T Consensus 6 ~~~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~~ 84 (94)
T 2yu4_A 6 SGFTCPITKEEMK-KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKRH 84 (94)
T ss_dssp SCCBCTTTCSBCS-SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTCC
T ss_pred cEeECcCcCchhc-CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHhc
Confidence 5699999999999 999996 99999999999983 6999 8865 544 9999999999999986443
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.10 E-value=3.9e-11 Score=100.82 Aligned_cols=59 Identities=25% Similarity=0.796 Sum_probs=49.0
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCcccchhhhHHHHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~~v~~~~ 147 (392)
+++.|+||++.+. +|++++|||+||..||..|+ .||.||.++.....+..+..++..+.
T Consensus 52 ~~~~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred ccCCCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3588999999998 99999999999999999995 49999999887555666666665554
No 14
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.09 E-value=5.9e-10 Score=111.08 Aligned_cols=127 Identities=15% Similarity=0.001 Sum_probs=109.0
Q ss_pred hhhcchhHHHhHHHHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016258 242 RAMGDADAAVAYFADSVEFLM-KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV 320 (392)
Q Consensus 242 ~~~gdhh~a~~~~e~~~~~~~-~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~ 320 (392)
+.+|++.+|+.+++.+++... .|++.++ .+..++++|+.++..+|+|++|+.+|+++|++++..+.....
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~----~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp----- 368 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINI----YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP----- 368 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-----
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccch----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-----
Confidence 367778888888887765543 4555444 456789999999999999999999999999999998865543
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHH
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+++.++++||.+|..+|++++|+.+|++|++|++.. .+||..+.++++++.+...|+
T Consensus 369 -~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 369 -VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999998 889999999999998877665
No 15
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=6.3e-11 Score=100.92 Aligned_cols=60 Identities=32% Similarity=0.733 Sum_probs=54.3
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHHHHHh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~~~~~ 148 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.++++.+..
T Consensus 77 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred cCCEeecCChhhc-CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4589999999988 99999999999999999983 59999999885 7899999999998874
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=87.33 Aligned_cols=50 Identities=22% Similarity=0.624 Sum_probs=43.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc-chhhhH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTT 138 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~ 138 (392)
..+.|+||++.+. +|++++|||+||..||..|+ .||.|+..+.. +.+|..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 68 (81)
T 2csy_A 14 IPFRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE 68 (81)
T ss_dssp CCSBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHH
T ss_pred CCCCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHH
Confidence 4689999999998 89999999999999999994 59999999876 666643
No 17
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=1.1e-10 Score=93.83 Aligned_cols=61 Identities=36% Similarity=0.892 Sum_probs=53.3
Q ss_pred CCeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc------chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK------IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~------~~~n~~l~~~v~~~~~~ 149 (392)
+.+.|+||++++. +|+++ +|||+||..||..|+ .||.|+..+.. +.+|..+.++++.+...
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 14 PHLMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp GGTBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred CcCCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 5799999999998 88887 999999999999993 59999998763 67899999999988653
No 18
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=2.7e-11 Score=91.49 Aligned_cols=53 Identities=32% Similarity=0.760 Sum_probs=44.8
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----------CCCCCCCCccc--chhhhHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGADIEK--IEADTTLQD 141 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~--~~~n~~l~~ 141 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.+
T Consensus 11 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 11 EEVTCPICLELLT-EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCEETTTTEECS-SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cCCCCcCCCcccC-CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 5799999999988 89999999999999999873 49999998875 666665543
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=92.93 Aligned_cols=60 Identities=23% Similarity=0.610 Sum_probs=52.1
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---------chhhhHHHHHHHHHHh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---------IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---------~~~n~~l~~~v~~~~~ 148 (392)
+++.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +..|..+.+++..+..
T Consensus 14 ~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 14 SECQCGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp HHHBCTTTCSBCS-SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCccCCcccC-ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 5799999999998 99999999999999999985 49999998763 5578888888888763
No 20
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=2.9e-10 Score=106.42 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.7
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
..+.|+||++++. +|++++|||+||+.||..|+ .||.|+.++.. +.+|..|+++|+.+...
T Consensus 207 ~~~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 207 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp STTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred cccCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 5699999999999 99999999999999999984 39999999886 89999999999999863
No 21
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.97 E-value=3.5e-10 Score=98.49 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
..|.||||++++. +|++++|||+||+.||..|+ .||.|+.++.. +.+|..|+++++.+...
T Consensus 105 ~~f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 105 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred HhhcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 5799999999999 99999999999999999984 39999999876 99999999999999764
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.96 E-value=3.7e-10 Score=92.21 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=49.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~ 146 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.++..+.+++..+
T Consensus 17 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCcCChhhc-CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 5799999999998 99999999999999999983 79999999877 66777776666543
No 23
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=1.6e-10 Score=93.25 Aligned_cols=61 Identities=33% Similarity=0.786 Sum_probs=51.3
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~--~~~n~~l~~~v~~~~~~ 149 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|+..+.. +.+|..+.++++.+...
T Consensus 20 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 20 KILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCCcccChhhc-CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3578999999988 89999999999999999983 59999998876 66777777777777653
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=4.3e-10 Score=97.30 Aligned_cols=60 Identities=25% Similarity=0.657 Sum_probs=52.3
Q ss_pred CCeeccccccccccCceec-cCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHHHHHh
Q 016258 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~~~~~ 148 (392)
..+.|+||++.+. +|+++ +|||+||..||..|+ .||.|+..+.. +.+|..+.++++.+..
T Consensus 53 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDMLK-NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHhh-CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4689999999999 78776 999999999999983 49999998854 8899999999998864
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=81.25 Aligned_cols=44 Identities=32% Similarity=0.831 Sum_probs=39.7
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||.||..||..|+ .||.||..+..
T Consensus 19 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 5689999999988 99999999999999999996 49999987754
No 26
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=2.8e-10 Score=80.08 Aligned_cols=44 Identities=36% Similarity=0.792 Sum_probs=39.3
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc-CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||+||..||..| ..||.||..+..
T Consensus 5 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccC-CeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 5689999999988 8999999999999999887 469999987654
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.90 E-value=2.9e-10 Score=86.75 Aligned_cols=53 Identities=26% Similarity=0.706 Sum_probs=44.1
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc----------CCCCCCCCCccc--chhhhHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQD 141 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~~ 141 (392)
+.+.|+||++.+. +|++++|||+||..||..| ..||.|+..+.. +.+|..+.+
T Consensus 18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 18 EEVTCPICLELLK-EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp TTTSCTTTCSCCS-SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred cCCCCcCCChhhC-cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 5689999999988 8999999999999999886 259999998875 666655443
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.89 E-value=8e-10 Score=82.37 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=38.7
Q ss_pred CCeeccccccccccCceecc-CCCcchHHhHHhcC------CCCCCCCCcc
Q 016258 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
+.+.|+||++++. +|++++ |||+||..||..|+ .||.||..+.
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 5799999999998 899999 99999999999983 6999998654
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=81.11 Aligned_cols=44 Identities=32% Similarity=0.810 Sum_probs=39.1
Q ss_pred CCeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+++ +|||+||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI-DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS-SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH-CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 5699999999998 78876 999999999999984 69999998765
No 30
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.88 E-value=9.3e-08 Score=86.65 Aligned_cols=170 Identities=17% Similarity=0.150 Sum_probs=129.0
Q ss_pred hhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHH
Q 016258 196 AQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL 275 (392)
Q Consensus 196 ~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l 275 (392)
.|+++.|...+..+.+.....+... -+.....+..++.++...|++..|+.+++++......+.+.. ....
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~ 84 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHD------HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAV 84 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSS------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHH
Confidence 4556666666665544443332211 133455677788888889999999999999877766553322 2234
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+..+|.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+.+|++++.+.+
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999877654322 25677889999999999999999999999999998
Q ss_pred Hh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 356 SL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 356 ~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.. ..+|..+....+++.++..+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 88 55677778888899998877763
No 31
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=79.67 Aligned_cols=44 Identities=30% Similarity=0.782 Sum_probs=39.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5799999999988 89999999999999999984 49999987654
No 32
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=80.72 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=39.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||.||..||..|. .||+||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 5689999999988 89999999999999999994 59999997764
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.5e-10 Score=86.29 Aligned_cols=52 Identities=27% Similarity=0.733 Sum_probs=43.9
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc----------CCCCCCCCCccc--chhhhHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQ 140 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~ 140 (392)
+.+.|+||++.+. +|+.++|||+||..||..| ..||.|+..+.. +.+|..+.
T Consensus 18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 18 EEVTCPICLELLT-QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCTTTCSCCS-SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred CCCCCCCCCcccC-CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 5689999999988 8999999999999999886 359999998875 66665543
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=3e-10 Score=95.68 Aligned_cols=52 Identities=21% Similarity=0.538 Sum_probs=43.5
Q ss_pred CCCCCCCC---cCCCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCc
Q 016258 78 FGYDAQSF---KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADI 130 (392)
Q Consensus 78 ~~~~~~~~---~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~ 130 (392)
.||+...+ ..+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+
T Consensus 17 ~g~~~~~~~~~l~~~~~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 17 PGFSKTLLGTKLEAKYLCSACRNVLR-RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CSBCGGGTGGGCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcchhhhhccCCcCcCCCCCChhhc-CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 36665555 225799999999999 99999999999999999994 599999864
No 35
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.4e-09 Score=97.67 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=55.0
Q ss_pred CCeeccccccccccCcee-ccCCCcchHHhHHhcC------CCCC--CCCCccc--chhhhHHHHHHHHHHhhc
Q 016258 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK------DCPL--CGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~------~CP~--C~~~~~~--~~~n~~l~~~v~~~~~~~ 150 (392)
..+.||||+.+|. +|++ +.|||+||+.||..|| .||. |+..+.. +.+|..|.++++.++...
T Consensus 180 ~el~CPIcl~~f~-DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 180 IELTCPITCKPYE-APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp CCSBCTTTSSBCS-SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred eeeECcCccCccc-CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence 4799999999999 8987 5999999999999986 3999 9998776 999999999999887654
No 36
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.86 E-value=1.5e-08 Score=102.55 Aligned_cols=143 Identities=8% Similarity=0.010 Sum_probs=112.3
Q ss_pred HHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHH-hCCCCChhHH
Q 016258 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLM-KLPMDDLEII 272 (392)
Q Consensus 194 ~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~-~L~~~~~e~~ 272 (392)
..+|++++|...+..+.+.....+ ...++.....+..++.++..+|++.+|.++++++.+... .+++.++
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~l------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp--- 390 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVF------ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA--- 390 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTB------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH---
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH---
Confidence 356777777666543322211111 124566677888999999899999999999999976655 5666555
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.+..++++||.++..+|++++|+.+|+++|++++..++.+.. +++..+++|+.++..++.++.|...|.++.+
T Consensus 391 -~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp------~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 391 -QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP------ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999999999998876554 7788889999999999999999999988754
No 37
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.82 E-value=1.1e-09 Score=81.56 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=40.8
Q ss_pred CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +++.++|||. ||..|+..|..||.||..+..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 3689999999988 9999999999 999999999999999998775
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.8e-09 Score=78.27 Aligned_cols=44 Identities=25% Similarity=0.739 Sum_probs=38.0
Q ss_pred CCeecccccc-ccccCc----eeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258 88 GPLSCMICQA-LLFECS----KCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~-~~~~~p----~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
+++.|+||++ ++. +| ++++|||+||..||..| ..||.|+..+..
T Consensus 2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4689999999 887 66 57899999999999998 359999998765
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=84.11 Aligned_cols=44 Identities=27% Similarity=0.716 Sum_probs=39.2
Q ss_pred CCeeccccccccccC----ceeccCCCcchHHhHHhc-------CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRF-------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. + |++++|||.||..||..| ..||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFT-EEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCC-TTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccc-ccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 5689999999988 6 999999999999999998 359999997754
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3.7e-09 Score=75.99 Aligned_cols=38 Identities=34% Similarity=0.903 Sum_probs=34.7
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCC
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C 126 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|
T Consensus 19 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5799999999988 89999999999999999984 49987
No 41
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.79 E-value=2.6e-09 Score=86.72 Aligned_cols=56 Identities=27% Similarity=0.635 Sum_probs=45.3
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVD 144 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~ 144 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|+..+.. ..++..+.+++.
T Consensus 22 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85 (116)
T ss_dssp HHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred CCCCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHH
Confidence 4689999999998 99999999999999999883 59999999876 334445444443
No 42
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.78 E-value=5e-07 Score=87.25 Aligned_cols=172 Identities=11% Similarity=0.008 Sum_probs=133.7
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.++..+..|++++|...+....... ...++ -+.....+..+|.++..+|++..|+.+++++.........
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKL----IFVKD----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG----GGCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH----hhCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--
Confidence 4456678899999988775332110 11111 1234567778888888999999999999999888777644
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
....+...+..||.++...|++++|+.+|++++++..... ....++..+.++|.++..+|++++|+.+|+
T Consensus 179 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 179 --YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp --THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2345667899999999999999999999999999877541 123567789999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+++.+.+.....|..+....+++.++..+|+.
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 280 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCH
Confidence 99999988755477788888899888877753
No 43
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.77 E-value=2.3e-09 Score=93.16 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=49.4
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~ 146 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.++..+.+++..+
T Consensus 17 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCChhhc-CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 5799999999999 99999999999999999983 69999998877 56677776666543
No 44
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.9e-09 Score=77.11 Aligned_cols=43 Identities=35% Similarity=0.816 Sum_probs=38.1
Q ss_pred CCeeccccccccccCc-------eeccCCCcchHHhHHhc----CCCCCCCCCcc
Q 016258 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
+.+.|+||++.+. ++ ++++|||.||..||..| ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHH-HHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCcccc-ccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 5689999999988 55 89999999999999999 36999998765
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=5.2e-09 Score=78.04 Aligned_cols=46 Identities=24% Similarity=0.764 Sum_probs=38.7
Q ss_pred cCCCeeccccccccccCc---eeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 86 KIGPLSCMICQALLFECS---KCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
..+...|+||++.+. .+ +.++|+|.||..||..| ..||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 346789999999987 44 78899999999999999 469999987653
No 46
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=2.2e-07 Score=80.56 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=115.7
Q ss_pred HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
++..|++++|...+... ...+ ......+..++.++...|++..++.+++++......+.. .
T Consensus 2 ~~~~g~~~~A~~~~~~~--------~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 62 (203)
T 3gw4_A 2 AFEAHDYALAERQAQAL--------LAHP------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----H 62 (203)
T ss_dssp -----CHHHHHHHHHHH--------HTST------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----H
T ss_pred ccccccHHHHHHHHHHh--------cCCh------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----c
Confidence 35678888888833211 0111 023456677888888899999999999999888777654 3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
......+.++|.++...|++++|+.+|++++++.+... + .....+..+.++|.++..+|++++|+.+|++++.
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP----E---DPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----C---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----c---cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999876421 1 1124567788999999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 353 RLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 353 i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+.+........+....+++.++..+|+
T Consensus 136 ~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 136 YAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 987764333344456677777766654
No 47
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=1.3e-06 Score=80.49 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=135.2
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+...+..|++++|...+............. . -+.....+..++.++...|++..|+.+++.+......+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH--D----HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS--S----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4444556778999999999887554433222100 0 123345667788888889999999999998877665542
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 016258 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~ 345 (392)
... ..........++.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+.
T Consensus 104 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 104 GKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH------PDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp CTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 211 1334568899999999999999999999999998877643332 2567788899999999999999999
Q ss_pred HHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 346 GFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 346 ~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++++.+.+.. ..+|........++.++..+|+.
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 999999999887 55677777888888888877753
No 48
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.73 E-value=3e-09 Score=78.32 Aligned_cols=44 Identities=34% Similarity=0.802 Sum_probs=39.1
Q ss_pred CCeeccccccccccCc-------eeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +| +.++|||.||..||..| ..||.||..+..
T Consensus 9 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHH-HHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhh-ccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 5689999999988 66 89999999999999998 369999998765
No 49
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.72 E-value=9.3e-07 Score=79.92 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=114.4
Q ss_pred hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
...+...+..|++++|...+..........+. .+ -+.....+..++.++...|++..|+.+++.+.....++..
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLG--KD----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--TT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC--Cc----chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 33444667889999998888644333222110 00 1334456777888888899999999999999777665533
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 267 ~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
... ........++|.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+.+
T Consensus 121 ~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 191 (283)
T 3edt_B 121 KFH---PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD------PNVAKTKNNLASCYLKQGKYQDAETL 191 (283)
T ss_dssp TTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 221 234567899999999999999999999999998776543222 25677888999999999999999999
Q ss_pred HHHHHHHHHH
Q 016258 347 FQEAIKRLES 356 (392)
Q Consensus 347 ~~eal~i~e~ 356 (392)
|++++.+...
T Consensus 192 ~~~~l~~~~~ 201 (283)
T 3edt_B 192 YKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998665
No 50
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=9e-09 Score=72.50 Aligned_cols=38 Identities=39% Similarity=0.928 Sum_probs=34.2
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCC
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C 126 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK-EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS-SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC-ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 5689999999988 89999999999999999992 49987
No 51
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=5.6e-08 Score=96.83 Aligned_cols=105 Identities=11% Similarity=-0.037 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKY--YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~--~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
.++..+..+...+..... ..|+|++|+..|+++|++++.++.... .+++.++++||.+|..+|+|++|+.+|
T Consensus 290 ~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~H------p~~a~~~~nLa~~y~~~g~~~eA~~~~ 363 (433)
T 3qww_A 290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSN------VYMLHMMYQAMGVCLYMQDWEGALKYG 363 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTS------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhc------hHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 344444445555544443 358999999999999999988775544 389999999999999999999999999
Q ss_pred HHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 348 QEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 348 ~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
++++.+++++ .+||+.+..+.+++.+|..+|+.
T Consensus 364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~ 398 (433)
T 3qww_A 364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398 (433)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence 9999999998 89999999999999999998865
No 52
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.71 E-value=9.2e-07 Score=72.67 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=110.1
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..++..+...|++..++.+++++......... ...+......+|.++...|++++|+.+|++++++.....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 445667788887889999999999998877766543 344567889999999999999999999999999876531
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
. ....+..+.++|.++..+|++++|+.+|++++.+.+.....+..+....+++.++..+|+.
T Consensus 84 ~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 84 D--------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp C--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred C--------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH
Confidence 1 2245667889999999999999999999999999988755555666777888888777653
No 53
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=5.9e-07 Score=84.55 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=118.1
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
.....|++++|...+....+.... .. + -......+..++.++..+|++..|+.+++++..+...++.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~----~~-~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----- 111 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHAN----NR-S---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT----- 111 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH----TT-C---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH----cC-C---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 344578888888877544332211 01 0 0122446667788887889999999999999888776654
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.......+.+||.++.. |++++|+.+|++++++..... .....+..+.++|.++..+|++++|+.+|++++
T Consensus 112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23456789999999988 999999999999999876521 112456788999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.+.......+..+....+++.++..+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 183 SMYKEMENYPTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence 998876333333334555555555433
No 54
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=1.2e-06 Score=81.68 Aligned_cols=168 Identities=9% Similarity=-0.066 Sum_probs=123.2
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+... +......... ......+..+|..+...+++..|+.+++.+........ ++
T Consensus 84 ~~~~~~~y~~a~~~~~~~-------l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~----~~ 151 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNE-------LKKEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI----DV 151 (293)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HTTCCCCHHH-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----CT
T ss_pred HHHHHhhHHHHHHHHHHH-------hccccCChHH-HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----cH
Confidence 567889999998877522 1122222221 11122333466666567788999999988866322222 12
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.....++++||.++...|++++|+.+|++++++.+.... .....+..+.++|.++..+|++++|+.+|++++
T Consensus 152 -~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 152 -YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp -THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 134457899999999999999999999999997665311 234667789999999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+.......+..+.+..+++.++..+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999887777888889999999998884
No 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.69 E-value=4.5e-09 Score=79.32 Aligned_cols=43 Identities=30% Similarity=0.923 Sum_probs=40.4
Q ss_pred CeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
...|+||++.+. +++.+||||. ||..|+..++.||.||..+..
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CCEeEEeCcccC-cEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 578999999988 9999999999 999999999999999998876
No 56
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.68 E-value=1e-06 Score=84.99 Aligned_cols=171 Identities=13% Similarity=0.050 Sum_probs=131.3
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.++..+..|++++|...+....... ...++ -+.....+..+|.++..+|++..|+.+++++.........
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-- 176 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKEL----PFVSD----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-- 176 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG----GGCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH----hhCCC----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--
Confidence 3456678899999988875332111 11111 1344567788899988999999999999999888776543
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
....+......||.++...|++++|+.+|++++++.+.... ...++..+.++|.++..+|++++|+.+|+
T Consensus 177 --~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 177 --YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 23356778999999999999999999999999998765311 12567789999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+++.+.+.. .+|..+..+.+++.++..+|+.
T Consensus 247 ~al~~~~~~-~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 247 KAAKVSREK-VPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHH-CGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhh-CChhHHHHHHHHHHHHHHCCCH
Confidence 999998877 3455577788888888877653
No 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=1.1e-08 Score=76.93 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=37.6
Q ss_pred CCeecccccccccc-Cceecc--CCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFE-CSKCTP--CSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~-~p~~~~--C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+++.|+||++.+.. +++.++ |||+||..|+..+| .||.||..+..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 57999999998752 456665 99999999999986 59999998765
No 58
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.66 E-value=5.5e-09 Score=75.10 Aligned_cols=44 Identities=32% Similarity=0.715 Sum_probs=38.4
Q ss_pred CCeeccccccccccCc-------eeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. ++ +.++|||.||..||..|. .||.||..+..
T Consensus 2 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHH-HHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhh-CccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4588999999987 55 899999999999999984 69999998764
No 59
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.66 E-value=8.8e-09 Score=75.15 Aligned_cols=45 Identities=36% Similarity=0.817 Sum_probs=39.0
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+.+.++.++|||.||..|+..| ..||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999998844699999999999999998 469999998765
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=8.9e-09 Score=76.85 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=40.4
Q ss_pred CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||. ||..|+.....||.||..+..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 3588999999988 9999999999 999999999999999998765
No 61
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=2.8e-07 Score=86.77 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=118.8
Q ss_pred HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
||..|++.+|...+..........+-...... ..-...+...+.++...|++..|+..+..+.+...+++. .
T Consensus 1 ~~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 72 (307)
T 2ifu_A 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDY---DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----L 72 (307)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCCSSSCSCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----H
T ss_pred CCccchHHHHHHHHHHHHHHccccccCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----H
Confidence 45678888888877644433221000000111 111112333455676789999999999999888777754 3
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
......+.++|.++..+|++++|+.+|++++++.+... .....+..+.++|.++.. |++++|+.+|++++.
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999875421 122467789999999999 999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 353 RLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 353 i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+.+........+..+.+++.++..+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 144 VFENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 998763333445667778887776664
No 62
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.64 E-value=1.3e-08 Score=70.81 Aligned_cols=44 Identities=27% Similarity=0.760 Sum_probs=37.9
Q ss_pred CCeecccccccccc---CceeccCCCcchHHhHHhc----CCCCCCCCCcc
Q 016258 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
....|+||++.+.+ .++.++|+|.||..||..| ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999863 3899999999999999999 46999998764
No 63
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.63 E-value=2.2e-08 Score=73.27 Aligned_cols=45 Identities=36% Similarity=0.905 Sum_probs=38.5
Q ss_pred CCeeccccccccc--cCceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+. +.++.++|+|.||..||..| ..||.||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4688999999875 25788999999999999998 459999998765
No 64
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=2.6e-06 Score=73.65 Aligned_cols=154 Identities=20% Similarity=0.183 Sum_probs=116.2
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+...+..|++++|...+......... .. .-+.....+..++.++..+|++..++.+++++.......+
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQK----SG----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHH----cC----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 334445667889999998877644332211 11 1123345667788888889999999999999988877766
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 016258 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~ 345 (392)
.. .........++|.++...|++++|+.+|++++++.+... .....+..+.++|.++..+|++++|+.
T Consensus 101 ~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 101 ED----PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------DQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp CC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cc----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 32 223556889999999999999999999999998865421 123456778899999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 016258 346 GFQEAIKRLESLTL 359 (392)
Q Consensus 346 ~~~eal~i~e~l~~ 359 (392)
+|++++.+.+.+..
T Consensus 169 ~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 169 HWLRARDIFAELED 182 (203)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998843
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.62 E-value=1.7e-06 Score=82.72 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=129.7
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+..+...... .+. -......+..++.++...|++..|+.+++++.........
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~----~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 262 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKE----FGD----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 262 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHccCHHHHHHHHHHHHHHHHh----cCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----
Confidence 445667777777766533322111 010 1122336667788888899999999999999877776643
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.......+..+|.++...|++++|+.+|++++++...... ....+..+..+|.++..+|++++|+.+|++++
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678899999999999999999999999998765321 23557788899999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNNQLS 382 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~ 382 (392)
.+.+.+...+..+..+..++.++..+|+...
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999986667778888999999999987643
No 66
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-08 Score=79.27 Aligned_cols=43 Identities=28% Similarity=0.717 Sum_probs=37.5
Q ss_pred CCeeccccccccccC---ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258 88 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.+. . ++.++|+|.||..||..|. .||+||..+.
T Consensus 39 ~~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYV-KGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECC-TTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhc-CCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 5689999999877 5 7789999999999999993 4999998765
No 67
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=1.8e-08 Score=75.61 Aligned_cols=45 Identities=24% Similarity=0.734 Sum_probs=37.6
Q ss_pred CCeecccccccccc--CceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFE--CSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
..+.|+||++.+.+ ..+.++|+|.||..||..|+ .||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 56899999999873 23667999999999999993 59999998765
No 68
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.60 E-value=2.3e-08 Score=69.59 Aligned_cols=44 Identities=27% Similarity=0.754 Sum_probs=36.8
Q ss_pred CCeecccccccccc--Cceecc-CCCcchHHhHHhcC----CCCCCCCCcc
Q 016258 88 GPLSCMICQALLFE--CSKCTP-CSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~--~p~~~~-C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.+.+ .++.++ |+|.||..||..|. .||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45789999999873 167776 99999999999994 4999998764
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.60 E-value=1.7e-06 Score=80.73 Aligned_cols=165 Identities=13% Similarity=0.048 Sum_probs=114.5
Q ss_pred HHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHH
Q 016258 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~ 273 (392)
...|++++|...+..+.+.... .. +. +.....+..+|.++..+|++..|+.+++.+......++. ..
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~----~~-~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~ 114 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKK----AG-NE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FR 114 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHH----TT-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH----hC-CH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence 3578888888877644322111 01 00 122456677888888899999999999999888777654 33
Q ss_pred HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
.....+.+||.++... |++++|+.+|++++++..... .....+..+.++|.++..+|++++|+..|++++.
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566899999999996 999999999999999876421 1123456788999999999999999999999887
Q ss_pred HHHHhhc-CCCchHHHHHHHHHHHHHHH
Q 016258 353 RLESLTL-KPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 353 i~e~l~~-~p~~a~~l~~~~~~~~~l~~ 379 (392)
+...... .........+++.++..+|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 214 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATD 214 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCC
Confidence 5422200 01112245566666665554
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.58 E-value=1.5e-06 Score=81.06 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=101.4
Q ss_pred hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
+.++...|++..|+..++.+.+...+++. .......+.++|.++..+|++++|+.+|++++++.....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------- 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------- 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 44556789999999999999888777654 334567899999999999999999999999999876532
Q ss_pred cchhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 318 SQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.....+..+.++|.++..+ |++++|+.+|++++.+..........+....+++.++..+|+
T Consensus 112 -~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 112 -QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 1234577899999999996 999999999999999988653222334556777777766654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.58 E-value=2.9e-06 Score=78.05 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=110.8
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+............ .+ -+.....+..++.++...|++..|+.+++.+......+.+..
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~- 148 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLG--KD----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD- 148 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-
Confidence 33556788899888877644333222111 00 133345667788888889999999999999877665542221
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.......+..+|.++...|++++|+.+|++++++.+....... ...+..+..+|.++..+|++++|+.+|++
T Consensus 149 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 149 --HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD------PNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp --CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1234567899999999999999999999999998766432221 25567788999999999999999999999
Q ss_pred HHHHHHH
Q 016258 350 AIKRLES 356 (392)
Q Consensus 350 al~i~e~ 356 (392)
++.+...
T Consensus 221 al~~~~~ 227 (311)
T 3nf1_A 221 ILTRAHE 227 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998655
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.56 E-value=4.6e-06 Score=80.47 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=126.0
Q ss_pred hHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCC
Q 016258 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 188 c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+...+..|++++|...+..... ..+.+.. .....+..++.++...|++..|+.+++++......+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~-------~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~- 121 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQ-------AGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND- 121 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------HCCSCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH-------hcccChh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-
Confidence 334477889999999988763322 1222221 12345677888888899999999999999888777644
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCC--------
Q 016258 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN-------- 339 (392)
Q Consensus 268 ~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~-------- 339 (392)
.......+..+|.++...|++++|+.+|++++++...... ....+..+.++|.++..+|+
T Consensus 122 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 189 (411)
T 4a1s_A 122 ----RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--------RLSEGRALYNLGNVYHAKGKHLGQRNPG 189 (411)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHHHHHHcCcccccccch
Confidence 3455678999999999999999999999999998766421 22456778888888888888
Q ss_pred ---------HHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 340 ---------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 340 ---------~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+++|+.+|++++.+.+.+...+..+....+++.++..+|+
T Consensus 190 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 8888888888888888775556666667777777766654
No 73
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=5.2e-08 Score=71.21 Aligned_cols=44 Identities=27% Similarity=0.814 Sum_probs=40.7
Q ss_pred CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+...|.||++... +++.+||||. ||..|+.....||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-NWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC-CCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC-CEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 4688999999988 9999999999 999999999999999998776
No 74
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=1.3e-05 Score=65.66 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=110.9
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+.......... .+ -......+..++.++...|++..++.+++.+.........
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--- 84 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEF----GD----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--- 84 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHh----CC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---
Confidence 335567888999988876444332221 10 0112346667888888899999999999999887776644
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
..........+|.++...|++++|+.+|++++++.+... .....+..+..+|.++..+|++++|+.+|++
T Consensus 85 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 85 --RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------chHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 234466788999999999999999999999999866532 1235567788999999999999999999999
Q ss_pred HHHHHHHh
Q 016258 350 AIKRLESL 357 (392)
Q Consensus 350 al~i~e~l 357 (392)
++.+.+++
T Consensus 155 a~~~~~~~ 162 (164)
T 3ro3_A 155 HLEISREV 162 (164)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99987654
No 75
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.6e-08 Score=74.25 Aligned_cols=43 Identities=28% Similarity=0.822 Sum_probs=37.9
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. + ++++|+|.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRA-D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCC-S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCcc-C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4689999999988 5 999999999999999994 49999987664
No 76
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=3.5e-06 Score=78.43 Aligned_cols=168 Identities=9% Similarity=-0.078 Sum_probs=115.3
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+.. .+...+..... .........++......|++..|+.+++.+......... .
T Consensus 84 ~~~~~~~y~~A~~~~~~-------~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~- 151 (293)
T 2qfc_A 84 MLCKQKRYKEIYNKVWN-------ELKKEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---V- 151 (293)
T ss_dssp HHHHTTCHHHHHHHHHH-------HHHTCCCCHHH-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC---T-
T ss_pred HHHHhhhHHHHHHHHHH-------HhccccCChhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc---h-
Confidence 45677788887776541 12222221111 112223344666665778899999988877543322211 1
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.....+++++|.++...|++++|+.+|++++++.+... ... .-.+..+.++|.++..+|++++|+.+|++++
T Consensus 152 -~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 152 -YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp -THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----ccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 12456899999999999999999999999998866432 110 1123678899999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+..........+.+..+++.++..+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 9987665556667777888888877764
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.49 E-value=5.7e-07 Score=95.18 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.||.|...+.++|.++..+|++.+|+.+|+++.+. .+... .++.+||.++..+|++++|+..|+++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~-------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFA-------AAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777777777777777777777766433 22221 24556666666666666666666666553
Q ss_pred HHH---------------------------HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 306 RRD---------------------------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 306 ~~~---------------------------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
.-. +++..+ +.+..+.++|.++..+|++++|+..|++++++
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----- 140 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AFADAHSNLASIHKDSGNIPEAIASYRTALKL----- 140 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 100 000011 12445566666666666666666666666543
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|+.+....+++.++..+++
T Consensus 141 -~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 141 -KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp -CSCCHHHHHHHHHHHHHTTC
T ss_pred -CCCChHHHhhhhhHHHhccc
Confidence 56666666666666665554
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.48 E-value=8.8e-07 Score=93.77 Aligned_cols=104 Identities=10% Similarity=0.191 Sum_probs=74.4
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
.+...+..+|.++..+|++.+|+..++++.+. .+.. ..++.++|.++..+|++++|+..|+++|++
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--- 140 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAF-------ADAHSNLASIHKDSGNIPEAIASYRTALKL--- 140 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 33445555666666666777776666665432 2222 235777888888888888888888887765
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+ +.+..+.++|.++..+|++++|.+.|++++++....
T Consensus 141 ----~P-------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 ----KP-------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp ----CS-------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred ----CC-------CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 23 235678999999999999999999999999987654
No 79
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=1.8e-06 Score=70.42 Aligned_cols=105 Identities=11% Similarity=0.190 Sum_probs=85.8
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..+|..++..|++..|+.+|+++.+. .+.. ...+.++|.++..+|++++|+..|+++|++.....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 345567899988999999999999988654 3333 24688999999999999999999999998865432
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.....++..+.++|.++..+|++++|+..|++++.+
T Consensus 77 -------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 223457788999999999999999999999998763
No 80
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=6.6e-08 Score=71.70 Aligned_cols=45 Identities=24% Similarity=0.641 Sum_probs=36.6
Q ss_pred CCeeccccccccccC--ceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+.+. .++++|+|.||..||..| ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 468899999998732 334499999999999999 359999987765
No 81
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.47 E-value=3.6e-08 Score=81.52 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=39.4
Q ss_pred CCeeccccccccccCc-------eeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +| ++++|||+||..||.+|+ .||.|+..+..
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHH-HHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhh-CccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 5689999999988 67 999999999999999993 59999998765
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.47 E-value=1e-06 Score=85.01 Aligned_cols=132 Identities=11% Similarity=-0.006 Sum_probs=108.3
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
+.|..+...|++..|+.+++.+......+.. .........++|.++...|++++|+.+|++++++......
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 178 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKD-----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---- 178 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----
Confidence 3567777889999999999998776666543 3345678999999999999999999999999998765311
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
....++..+.++|.++..+|++++|+.+|++++.+.+.....+..+....+++.++..+|+
T Consensus 179 ---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 179 ---YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp ---THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 1335788899999999999999999999999999999886556666778888888877765
No 83
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.47 E-value=8.6e-06 Score=77.81 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=112.3
Q ss_pred HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~ 309 (392)
....+..++.++...|++..|+.+++++......... ...+......+|.++...|++++|+.+|++++++....
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 3456777888888899999999999999877776543 34456789999999999999999999999999887653
Q ss_pred hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
. .....+..+..+|.++..+|++++|+.+|++++.+.......+..+.....++.++..+|+.
T Consensus 261 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 261 K--------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred c--------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 1 12345778889999999999999999999999999988855556666777888887777653
No 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.47 E-value=4.7e-08 Score=78.91 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=36.3
Q ss_pred CeeccccccccccCce------------------eccCCCcchHHhHHhcC---------CCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSK------------------CTPCSHVYCKACISRFK---------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~------------------~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~ 132 (392)
+..|+||++.|. .+. .++|+|.||..||..|. .||+||..+..
T Consensus 25 ~~~C~ICl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLA-VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETT-SCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhc-CcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999986 433 78999999999999985 49999987754
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.47 E-value=1.3e-06 Score=84.39 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=108.7
Q ss_pred hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
.+.|..+...|++..|+.+++++......+.. .........++|.++...|+++.|+.+|++++++......
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--- 176 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--- 176 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---
Confidence 44567777889999999999998777666644 2456778999999999999999999999999998764321
Q ss_pred CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
....++..+.++|.++..+|++++|+++|++++.+.+.....+..+....+++.++..+|+
T Consensus 177 ----~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 177 ----YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 1225788899999999999999999999999999998885545666778888888887765
No 86
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.46 E-value=3.1e-06 Score=68.94 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=92.5
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
|...+.+...|..++..|++..|+..|+++.+. .+... ..+.++|.++..+|++++|+..|++++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENA-------ILYSNRAACLTKLMEFQRALDDCDTCIRL-- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence 455667777899988999999999999887543 33333 46788999999999999999999999975
Q ss_pred HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV 373 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~ 373 (392)
.+. ....+.++|.++..+|++++|+..|++++++ +|++.....+++.+
T Consensus 77 -----~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 77 -----DSK-------FIKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGVRNC 124 (126)
T ss_dssp -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred -----hhh-------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHHHHh
Confidence 222 2456888999999999999999999999865 68888777777654
No 87
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=9.5e-06 Score=78.24 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=110.8
Q ss_pred HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~ 309 (392)
....+..++.++...|++..|+.+++++......... ...+...+..++.++...|++++|+.+|++++++....
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 3446677888888899999999999998777666443 33456688999999999999999999999999987653
Q ss_pred hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
. .....+..+..+|.++..+|++++|+.+|++++.+.......+..+.....++.+|..+|+.
T Consensus 297 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 297 G--------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred C--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence 1 12245677889999999999999999999999999998855556666777788887776653
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.42 E-value=1.7e-05 Score=73.07 Aligned_cols=137 Identities=16% Similarity=0.167 Sum_probs=110.5
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..++.++...|++..|+.+++.+......... ...+...+..++.++...|++++|+.+|++++++.....
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 345667788887899999999999998777666433 344566889999999999999999999999998876531
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.....+..+..+|.++..+|++++|+.+|++++.+.......+........++.++..+|+.
T Consensus 258 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 258 --------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred --------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 12345677889999999999999999999999999998855566666778888888877754
No 89
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.42 E-value=1.1e-05 Score=74.26 Aligned_cols=169 Identities=17% Similarity=0.118 Sum_probs=118.8
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+.......... . .-+.....+..++.++...|++..|+.+++++.........
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~----~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 118 (338)
T 3ro2_A 50 GNAYFYLHDYAKALEYHHHDLTLARTI----G----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--- 118 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH----T----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcc----c----ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---
Confidence 345567788888887775443322211 1 01233456667788888899999999999999887777644
Q ss_pred hHHHHHHHHHHHHHHHHHhccC--------------------HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGD--------------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK 329 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~--------------------l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~ 329 (392)
...+......+|.++...|+ +++|+.+|++++.+.+.... ....+..+.+
T Consensus 119 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~ 188 (338)
T 3ro2_A 119 --KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------RAAQGRAFGN 188 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHH
Confidence 23456688899999999999 99999999998887655321 2345667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|.++..+|++++|+.+|++++.+.......+..+....+++.++..+|+
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888888888887764444445556666666665554
No 90
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.39 E-value=5.1e-07 Score=89.82 Aligned_cols=101 Identities=11% Similarity=-0.015 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
...+..++.+..++ .+|++++|+..|+++|+++...+.... .+++.++++|+.+|..+|+|++|+.+|++++.
T Consensus 285 ~~~~~ll~~ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 285 KEVQESLKKIEELK-AHWKWEQVLAMCQAIISSNSERLPDIN------IYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTS------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhccCcCCccc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44555666666555 568999999999999987766554333 37899999999999999999999999999999
Q ss_pred HHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258 353 RLESL--TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 353 i~e~l--~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+++.+ ..||+.+..+.+++.+|..+|+.
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~ 387 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMF 387 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCH
Confidence 99998 99999999999999999998864
No 91
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.36 E-value=2.5e-06 Score=69.49 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
....+.++++||+.++..|++++|+..|+++|++ .+. .+..+.++|.++..+|++++|+..|++++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------~p~-------~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------DPS-------NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456778999999999999999999999999976 232 25678899999999999999999999999
Q ss_pred HHHHHh-hcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESL-TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l-~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
++-... ...+..+....+++.++..+++
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 98 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGNAFQKQND 98 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence 987765 2222333344555555554443
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.35 E-value=8.8e-06 Score=72.20 Aligned_cols=155 Identities=12% Similarity=0.031 Sum_probs=116.7
Q ss_pred hHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMG-NTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 188 c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~-~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
..+...+..|++++|...|..... ..+ .+ ...+.+++.++...|++..|+.+++.+.. +.+
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p 73 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLK-------LTNNQD-------SVTAYNCGVCADNIKKYKEAADYFDIAIK----KNY 73 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------HTTTCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh-------ccCCCC-------cHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCc
Confidence 334467788999999988863321 111 11 13455578888889999999999887752 333
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 267 ~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
. .......+|.++...|++++|+..|++++++ .+.+......++..+.++|.++..+|++++|+..
T Consensus 74 ~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 74 N-------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp S-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c-------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 2 2346788999999999999999999999865 3443434446677889999999999999999999
Q ss_pred HHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHHH
Q 016258 347 FQEAIKRLESLTLKPE--EAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 347 ~~eal~i~e~l~~~p~--~a~~l~~~~~~~~~l~~~ 380 (392)
|++++++ +|+ .+....+++.++..+|+.
T Consensus 140 ~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 140 YKHATDV------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc------CCCcccHHHHHHHHHHHHHHHHH
Confidence 9888764 788 788889999999888877
No 93
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=7.8e-08 Score=74.92 Aligned_cols=61 Identities=18% Similarity=0.587 Sum_probs=43.9
Q ss_pred CCeeccccccccccCceec---cCCCcchHHhHHhcC------------CCCC--CCCC--ccc-chhhhHHHHHHHHHH
Q 016258 88 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK------------DCPL--CGAD--IEK-IEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~~~------------~CP~--C~~~--~~~-~~~n~~l~~~v~~~~ 147 (392)
+.+.|+||++.+. .+..+ +|||.||..||..++ .||. |+.. +.. ...+....+++++|.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 4688999999987 55443 799999999998763 3999 9988 555 222333356677776
Q ss_pred hh
Q 016258 148 EG 149 (392)
Q Consensus 148 ~~ 149 (392)
..
T Consensus 83 ~~ 84 (94)
T 1wim_A 83 KL 84 (94)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 94
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=4e-07 Score=68.85 Aligned_cols=45 Identities=27% Similarity=0.671 Sum_probs=35.3
Q ss_pred CCeeccccccccccC-------------ceec-cCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFEC-------------SKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-------------p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
++..|+||++.|.+. ++.+ +|+|.|+..||.+|. .||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 556788888887631 4455 599999999999994 49999987654
No 95
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.8e-05 Score=63.34 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=98.1
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+...|..++..|++..|+.+++.+... .+... ..+.++|.++...|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEK----- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 345667788888899999999999887544 23232 46889999999999999999999999976
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l 377 (392)
.+. ....+.++|.++..+|++++|+..|++++.+-......|.+..+...+..+...+
T Consensus 68 --~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 68 --DPN-------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp --CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred --CCC-------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 222 2456788999999999999999999999999877777788888888887776543
No 96
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.31 E-value=1.5e-07 Score=90.53 Aligned_cols=44 Identities=25% Similarity=0.766 Sum_probs=41.1
Q ss_pred CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||. ||..|+..|..||.||..+..
T Consensus 294 ~~~~C~IC~~~~~-~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVFIPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-CEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-ceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 4689999999988 9999999999 999999999999999998875
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.31 E-value=7.9e-05 Score=63.49 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=99.1
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~-e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
..+...|...+..|++.+|+..|+.+.+.......... .....-...+.++|.++..+|++++|+..|.++|++.....
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 35566777777899999999999999877665322110 12223345899999999999999999999999999876666
Q ss_pred hcCCCCCcchhhHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSL----AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRL 371 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl----~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~ 371 (392)
+-.+ +.+..+ .++|.++..+|++++|+..|++++++--+- ..-++...+...+.
T Consensus 92 e~~p-------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 92 ELNQ-------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CTTS-------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cCCC-------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5555 345566 999999999999999999999999986554 33344444444333
No 98
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=1.9e-05 Score=73.37 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=97.6
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..+|.++..+|++..|+.+++.+......+.. ........+.++|.++..+|++++|+.+|++++++.....
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~- 230 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN- 230 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-
Confidence 35678888988899999999999999888777743 2445667899999999999999999999999999876532
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhc
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~-~~~A~~~~~eal~i~e~l~~ 359 (392)
....++..+.++|.++..+|+ +++|+.+|++|+.+.+.+.+
T Consensus 231 -------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 231 -------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp -------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 122568889999999999995 69999999999999998743
No 99
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.29 E-value=1.5e-07 Score=67.68 Aligned_cols=44 Identities=25% Similarity=0.586 Sum_probs=38.6
Q ss_pred CCeeccccccccccCceec--cCCCc-chHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
....|.||++... +++.+ ||||. ||..|+..++ .||.||.++..
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3568999999988 77777 99998 9999999986 89999998865
No 100
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.29 E-value=6.6e-06 Score=81.06 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=98.0
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+.++|.+....|++.+|+..++++.++......... ......+..++|.++..+|++++|+.+|++++++.+.....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4567888888899999999999999877665443222 22334578999999999999999999999999998876543
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSI--GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~--g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
... +.+..+.++|.++..+ +++++|++.|++++++ +|++..+..+++.++..+++
T Consensus 131 ~~~------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 131 YRI------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp SCC------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHH
T ss_pred cch------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcC
Confidence 222 3455667777655544 5788999999888764 56777777777766655544
No 101
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.26 E-value=3.4e-05 Score=64.75 Aligned_cols=131 Identities=16% Similarity=0.090 Sum_probs=100.2
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC----CCChh---HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP----MDDLE---IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~----~~~~e---~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
..+...|..++..|++..|+.+|..+........ +...+ +.......+.++|.++..+|++++|+..|+++|+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4566678888889999999999999876644321 11111 1344556889999999999999999999999997
Q ss_pred HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch-HHHHHHHHHHHHHHHHhh
Q 016258 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GLEQRRLSVLEFLNNQLS 382 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a-~~l~~~~~~~~~l~~~~~ 382 (392)
+ .+. .+..+-.+|.++..+|++++|+..|++++.+ +|++. .+...+..+...+.+...
T Consensus 92 ~-------~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 92 R-------EET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp H-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred c-------CCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7 232 2557888999999999999999999998876 67777 677777777776665443
No 102
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=2.3e-05 Score=74.90 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~----~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~ 301 (392)
.-+.....+..+|..++..|++..|+..|+.+........... .++.......+.++|.++..+|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566778889988899999999999998876644332111 223445567899999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258 302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 302 sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
+|++ .+. .+..+.++|.++..+|++++|+..|++++.+ +|.+.....+++.++..+++.-
T Consensus 222 al~~-------~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 222 ALEL-------DSN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-------CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHH
Confidence 9976 222 2557889999999999999999999998865 6777778888888887777653
No 103
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.24 E-value=1.8e-07 Score=67.48 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=38.3
Q ss_pred CCeeccccccccccCceec--cCCCc-chHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+...|.||++... +++.+ ||||. ||..|+..|+ .||.||..+..
T Consensus 7 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4578999999988 88876 99999 8999999985 49999998865
No 104
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.4e-05 Score=74.98 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=109.0
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCc----------HHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHH
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNT----------SELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVE 259 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~----------~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~ 259 (392)
+..++..|++.+|...+... +...+.. ........+.+..++.+|...|++..+..++..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSL-------LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-------HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-------HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34678889999998877422 2211111 123344456778899999899999999999988877
Q ss_pred HHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCC
Q 016258 260 FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN 339 (392)
Q Consensus 260 ~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~ 339 (392)
+...+.. ........+.++.+....|+++.|+..|++++.+...... .+..+....+||.++..+|+
T Consensus 84 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 84 YMMQFAK-----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--------VFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HHHTSCH-----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--------CSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHccc-----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHccC
Confidence 7766543 1223345666777777777777777777777766543211 11245556677777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 340 EDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 340 ~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+.+|+..+++++.++......+..+.+...++.++..+++
T Consensus 151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 7777777777776666655455555555556666555544
No 105
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.21 E-value=4.7e-07 Score=87.71 Aligned_cols=43 Identities=30% Similarity=0.813 Sum_probs=38.7
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
...|+||++.+. +|+.++|||.||..|+..| ..||.||..+..
T Consensus 332 ~~~C~ICle~~~-~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 379999999988 9999999999999999988 359999998765
No 106
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.19 E-value=4.4e-07 Score=74.84 Aligned_cols=45 Identities=33% Similarity=0.771 Sum_probs=39.3
Q ss_pred CCCeeccccccccccCc-------eeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258 87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
.+.+.|+||++.+. .+ +.++|||.||..||.+| ..||.||..+..
T Consensus 70 ~~~~~C~iC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHH-HHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccc-cccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 35789999999987 55 89999999999999998 469999998765
No 107
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.18 E-value=2e-05 Score=67.30 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=30.1
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~ 257 (392)
.-+..|++++|...|..+- ...| .+...+..++.++...|++..++..++.+
T Consensus 14 ~~~~~g~~~~A~~~~~~al-------~~~p-------~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKVL-------KADP-------NNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-------HhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567899999988886332 2222 22334445555555666666666555444
No 108
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.17 E-value=8.8e-06 Score=72.38 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhh-----------cchhHHHhHHHHHHHH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAM-----------GDADAAVAYFADSVEF 260 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~-----------gdhh~a~~~~e~~~~~ 260 (392)
..++.|++++|...+... +...|. ....+..++.++... |++.+|+..++.+...
T Consensus 48 ~~~~~g~~~~A~~~~~~a-------l~~~P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTL-------VARTPR-------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HHHCTT-------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-------HHhCCC-------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 455677777777766422 222222 233455666666667 8888888888776543
Q ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCH
Q 016258 261 LMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE 340 (392)
Q Consensus 261 ~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~ 340 (392)
.+... .....+|.++...|++++|+..|++++++. . -...+.++|.++..+|++
T Consensus 114 ----~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~-------~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 114 ----NPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE--------D-------TPEIRSALAELYLSMGRL 167 (217)
T ss_dssp ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-------CHHHHHHHHHHHHHHTCH
T ss_pred ----CcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------c-------chHHHHHHHHHHHHcCCH
Confidence 34333 356789999999999999999999999773 1 134567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
++|+..|++++.+ +|++.....+++.++..+|+.
T Consensus 168 ~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 168 DEALAQYAKALEQ------APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHHHHHHH------STTCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHh------CCCChHHHHHHHHHHHHccCH
Confidence 9999999988864 788888888999888777754
No 109
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.17 E-value=3.2e-05 Score=71.78 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=94.2
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..+|.++...|++..|+.+++++.......... . ......+.++|.++..+|++++|+.+|++++++.....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-E---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-c---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 3466778888888999999999999998877766542 1 11226789999999999999999999999999864311
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhh
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA-VDGFQEAIKRLESLT 358 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A-~~~~~eal~i~e~l~ 358 (392)
....++..+.++|.++..+|++++| ..+|++|+.+.+.+.
T Consensus 231 --------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 231 --------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp --------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred --------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 1124677889999999999999999 888999999999883
No 110
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.16 E-value=3.4e-05 Score=68.29 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=112.8
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.+...+..|++++|...+.... ... |.....+..++.++..+|++..|+..++.+.. +.+..
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al-------~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~ 109 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAI-------KKN-------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIK----AVPGN 109 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-------HTT-------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC
T ss_pred HHHHHHHhhcHHHHHHHHHHHH-------HhC-------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc
Confidence 3446667888888888775331 222 22345667788888889999999999887754 35566
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh--HHHHHHHHHHHHHhcCCH------
Q 016258 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--VAVSLAKVADVDRSIGNE------ 340 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d--la~sl~~la~~~~~~g~~------ 340 (392)
..+...+......+|.++...|++++|+..|++++++ .+ + .+..+.++|.++..+|+.
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p-------~~~~~~~~~~l~~~~~~~~~~~~~~a~ 175 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TS-------KKWKTDALYSLGVLFYNNGADVLRKAT 175 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CC-------CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999999999999999999864 22 2 345566677666666655
Q ss_pred --------------HHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHH
Q 016258 341 --------------DVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 341 --------------~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~ 374 (392)
..+...|++|+..+++. +..|++...+..++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 176 PLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 45566678888888887 77899888877777664
No 111
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=5.1e-05 Score=63.80 Aligned_cols=126 Identities=8% Similarity=0.072 Sum_probs=96.5
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..++..++..|++..|+.+++.+... .+.. ...+.++|.++...|++++|+..|++++++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 75 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI----APAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVD---- 75 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence 345667788888899999999999887554 2322 2467899999999999999999999999762
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKP 385 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~~ 385 (392)
+. ....+.++|.++..+|++++|+..|++++.+-- +...+.+...+..+...+++......
T Consensus 76 ---p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~l~~~~~~~~~~~~~~~ 136 (164)
T 3sz7_A 76 ---PK-------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG----NGGSDAMKRGLETTKRKIEEANRGAE 136 (164)
T ss_dssp ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS----SSCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred ---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHHHHHhccC
Confidence 22 255678899999999999999999999987641 11223467778888888887766543
No 112
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.14 E-value=0.00023 Score=67.73 Aligned_cols=169 Identities=14% Similarity=0.061 Sum_probs=116.5
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+..++..|++++|...+... +...+.... ......+..++..+...|++..+..+++++.......+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 88 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLA-------LEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV--- 88 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------HHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHCCCHHHHHHHHHHH-------HHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---
Confidence 34667788998888766422 111111111 112335566777777889999999999998877766543
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.......+..++.++...|++++|+..|++++++.+....... ...+..+.++|.++..+|++++|..+|++
T Consensus 89 --~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 89 --WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2234567889999999999999999999999998775432211 24566778899999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 350 AIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 350 al~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
++.+..... ++.......+++.++...|+
T Consensus 161 al~~~~~~~-~~~~~~~~~~la~~~~~~g~ 189 (373)
T 1hz4_A 161 GIEVLSSYQ-PQQQLQCLAMLIQCSLARGD 189 (373)
T ss_dssp HHHHTTTSC-GGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHhhccC-cHHHHHHHHHHHHHHHHcCC
Confidence 998876541 11233345556666655544
No 113
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=9.2e-05 Score=64.28 Aligned_cols=135 Identities=12% Similarity=0.079 Sum_probs=101.1
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-----EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~-----e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL 303 (392)
.....+...|..++..|++..|+.++..+............ ...........++|.++...|++++|+..|++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34456677888888899999999999887654322211000 0111224678899999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
++ .+. ....+..+|.++..+|++++|+..|++++.+ +|.+......++.++..+++....
T Consensus 116 ~~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 116 KI-------DKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HH-------STT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred Hh-------Ccc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 76 222 2456788999999999999999999998865 678888899999999888776543
No 114
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=4.9e-05 Score=64.77 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.+..+.++|+.....|++++|+..|.++|++.-...... -.......+..+.++|.++..+|++++|+..|+++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999998865421111 001111234578999999999999999999999999997
Q ss_pred HHh-hcCCCchHHH----HHHHHHHHHHHHH
Q 016258 355 ESL-TLKPEEAGLE----QRRLSVLEFLNNQ 380 (392)
Q Consensus 355 e~l-~~~p~~a~~l----~~~~~~~~~l~~~ 380 (392)
.+- +.+|+.+... .+++..+..||+.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~ 118 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRG 118 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence 776 8889998888 9999999988764
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.11 E-value=2.2e-05 Score=65.64 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
..-.||.++...|++++|+..|++++++ .+. -+..+.++|.++..+|++++|+..|++++++
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~-------~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---- 94 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINV-------QER-------DPKAHRFLGLLYELEENTDKAVECYRRSVEL---- 94 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----
Confidence 3445677777777777777777777654 222 1345666777777777777777776666643
Q ss_pred hcCCCchHHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|.+.....+++.++..+++
T Consensus 95 --~p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 95 --NPTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp --CTTCHHHHHHHHHHHHHHCS
T ss_pred --CCCCHHHHHHHHHHHHHcCC
Confidence 56666666666666655543
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.10 E-value=2.2e-05 Score=63.77 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
+...++....++|..+...|++++|+..|+++|++ .+. .+..+.++|.++..+|++++|+..|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPE-------NAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 34556778999999999999999999999999965 232 2557889999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+++ +|.......+++.++..+|+.
T Consensus 74 l~~------~p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 74 IRL------DSKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHh------hhhhhHHHHHHHHHHHHCCCH
Confidence 865 788888888899998888764
No 117
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00022 Score=63.27 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=105.4
Q ss_pred HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e 270 (392)
...+..|++++|...+..... .. . ....+..++.++...|++..|+.+++.+..........
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~-------~~-~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--- 74 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWE-------LH-K-------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD--- 74 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HS-C-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHhccHHHHHHHHHHHHH-------hh-c-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc---
Confidence 366788999999888763321 11 1 12355667778878999999999999887766555432
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-------------------HHHhhcCCCCCcchhhHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-------------------RDAVKRHSNVPSQVLDVAVSLAKVA 331 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~-------------------~~~~~~~~~~~~~~~dla~sl~~la 331 (392)
...+......+|.++...|++++|+..|++++++. +.+.... .+.+..+..+|
T Consensus 75 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~ 146 (258)
T 3uq3_A 75 -YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG 146 (258)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence 22345688899999999999999999999999831 1111111 13445566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 332 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 332 ~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.++...|++++|+..|++++.+ +|.+.....+++.++..+|+
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCC
Confidence 8888888888888777777653 34445555555555554443
No 118
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.05 E-value=1.8e-06 Score=68.67 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=35.8
Q ss_pred CCeeccccccccccC-----------------ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258 88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
++..|+||++.|.+. .+.++|+|.|+..||..|. .||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 457799999987732 3568999999999999993 5999998754
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.03 E-value=2.6e-05 Score=65.16 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=87.2
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
........++.+++..|++..|+.+++.+... .+... .++..+|.++...|++++|+..|++++++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----~p~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~~--- 94 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV----QERDP-------KAHRFLGLLYELEENTDKAVECYRRSVEL--- 94 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCchHHHHHHHHHHHHh---
Confidence 33445567889998999999999999887544 34343 36789999999999999999999999976
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG-FQEAIKRLESLTLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~-~~eal~i~e~l~~~p~~a~~l~~~~~~~~~ 376 (392)
.+. ....+.++|.++..+|++++|... +++++++ +|.+..+...++.++..
T Consensus 95 ----~p~-------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 95 ----NPT-------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL------FPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp ----CTT-------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------STTCHHHHHHHHHHHHT
T ss_pred ----CCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHH
Confidence 232 245678899999999999776654 4666653 67776666555555543
No 120
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.02 E-value=0.00013 Score=69.12 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=101.5
Q ss_pred hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+.-.+...++.|++++|...+.... .. .|.+...+..++.++...|++..|+.+++.+... .
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al-------~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~ 129 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAI-------LQ-------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----Q 129 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-------HH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-------Hh-------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----C
Confidence 3344557788999999998886332 11 2233446677888887889999999998877544 2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC----------------Cc------ch---
Q 016258 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV----------------PS------QV--- 320 (392)
Q Consensus 266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~----------------~~------~~--- 320 (392)
+.. ...+..+|.++...|++++|+..|++++++........... .. ..
T Consensus 130 p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 130 PNN-------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 222 24677888889899999999999998887543321111000 00 00
Q ss_pred -----hh--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 321 -----LD--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 321 -----~d--la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.+ .+..+..+|.++..+|++++|+..|++++.+ +|.++....+++.++..+|
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Confidence 00 2345667778888888888888777777654 3444555555555555444
No 121
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.01 E-value=4.4e-05 Score=75.08 Aligned_cols=97 Identities=13% Similarity=0.018 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
....+.||.++..+|++++|+..|++++++.+.......+ ...+.++.++|.+|..+|++++|+.+|++++.+.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 3468899999999999999999999999998776543322 24577899999999999999999999999999999
Q ss_pred Hh--hcCCCchHHHHHHHHHHHHH
Q 016258 356 SL--TLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 356 ~l--~~~p~~a~~l~~~~~~~~~l 377 (392)
.+ ..+++.+.+..+++..+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~ 149 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKC 149 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHH
Confidence 98 44566666666666555444
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.00 E-value=0.00026 Score=55.45 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=92.7
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
.....+..++..+...|++..|+.+++.+... .+.. ......++.++...|++++|+..|++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 33456667788887889999999998877543 2222 235778899999999999999999999875
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+. ....+..+|.++..+|++++|+..|++++.+ .|.+......++.++..+++
T Consensus 76 ----~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 76 ----DPA-------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTT
T ss_pred ----Ccc-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHhc
Confidence 222 1446778999999999999999999988765 57777778888888877764
No 123
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=0.00011 Score=61.58 Aligned_cols=101 Identities=16% Similarity=0.076 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ----VLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~----~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.....+.++|..+...|++++|+..|.+++++.............. ....+..+.++|.++..+|++++|+..|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3456789999999999999999999999999866544322211111 224566788999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 350 AIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 350 al~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
++.+ +|..+....+++.++..+|+.
T Consensus 89 al~~------~p~~~~a~~~~g~~~~~~g~~ 113 (162)
T 3rkv_A 89 VLKR------EETNEKALFRRAKARIAAWKL 113 (162)
T ss_dssp HHHH------STTCHHHHHHHHHHHHHTTCH
T ss_pred HHhc------CCcchHHHHHHHHHHHHHhcH
Confidence 9876 688888888999999888764
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=7.9e-05 Score=74.31 Aligned_cols=135 Identities=11% Similarity=0.021 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~----~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~ 301 (392)
.-+.....+..+|..++..|++..|+..|+++........... .++.......+.+++.++..+|++++|+..|.+
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4456667778889988899999999999998877654432111 123444567889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 302 sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++. +. .+..+.++|.++..+|++++|+..|++++++ +|.+......++.++..+++.
T Consensus 343 al~~~-------p~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 343 ALGLD-------SA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHHH
T ss_pred HHhcC-------Cc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHH
Confidence 99762 22 2557889999999999999999999998764 577777788888888777754
No 125
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.99 E-value=6.2e-05 Score=71.41 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
.....+|.++...|++++|+..|++++++. +. .+..+.++|.++..+|++++|+..|++++.+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 276 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-------PE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEI--- 276 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 356788999999999999999999988752 22 2456778888999999999998888888765
Q ss_pred hhcCCCchHHHHHHHHHHHHHHH
Q 016258 357 LTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 357 l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|++.....+++.++..+|+
T Consensus 277 ---~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 277 ---QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTC
T ss_pred ---CCCchHHHHHHHHHHHHCCC
Confidence 57777777788888777664
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.98 E-value=4e-05 Score=64.69 Aligned_cols=103 Identities=10% Similarity=0.073 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.-|.+...+..++...+..|++.+|+.+|+.+... .+.+. ..+.++|.++...|++++|+..|++++++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~-------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNV-------DYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34666677888888888999999999999876543 44444 36788999999999999999999999976
Q ss_pred HHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+.+ ...+.++|.++..+|++++|+..|++++.+
T Consensus 100 -------~P~~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 -------GKND-------YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -------SSSC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2332 345778999999999999999999999876
No 127
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.96 E-value=4.7e-05 Score=67.59 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=105.0
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+. ..+...+.+. ..+..++.++...|++..|+..++.+... .+...
T Consensus 12 g~~~~~~g~~~~A~~~~~-------~al~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~ 73 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFE-------RALKENPQDP-------EALYWLARTQLKLGLVNPALENGKTLVAR----TPRYL 73 (217)
T ss_dssp HHHHHHTTCHHHHHHHHH-------HHHTTSSSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH
T ss_pred HHHHHHcCCHHHHHHHHH-------HHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcH
Confidence 335678889999888775 2223333333 45667788887899999999988877543 34443
Q ss_pred hHHHHHHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC
Q 016258 270 EIIHTLSVSLNKIGDLKYYG-----------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG 338 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~-----------g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g 338 (392)
. ....+|.++... |++++|+..|++++++ .+. .+..+.++|.++..+|
T Consensus 74 ~-------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 74 G-------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPR-------YAPLHLQRGLVYALLG 132 (217)
T ss_dssp H-------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTT
T ss_pred H-------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Ccc-------cHHHHHHHHHHHHHcC
Confidence 3 566778888888 8899999998888865 333 2456778999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 339 ~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
++++|+..|++++++- ++.....+++.++..+|+.
T Consensus 133 ~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp CHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCH
T ss_pred ChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCH
Confidence 9999999999998763 4455667777777766653
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.94 E-value=0.00011 Score=61.33 Aligned_cols=125 Identities=18% Similarity=0.037 Sum_probs=90.5
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
|.....+..++......|++.+|+.+++.+... .+.+. ..+..+|.++...|++++|+..|++++.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDS-------RFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 344455666788887899999999998876433 34343 35678999999999999999999999875
Q ss_pred HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+.+ ...+.++|.++..+|++++|+..|++++.+.. .+|+...+..+....+..+...
T Consensus 85 -----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~l~~l~~~ 142 (148)
T 2vgx_A 85 -----DIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELIA---NXPEFXELSTRVSSMLEAIKLK 142 (148)
T ss_dssp -----STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHC---
T ss_pred -----CCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CCCcchHHHHHHHHHHHHHHhH
Confidence 2332 33567899999999999999999999987654 3455555556555555555544
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.93 E-value=0.00015 Score=57.45 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=90.0
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..++..+...|++..|+.+++.+... .+.. ......++.++...|++++|+..|++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---- 80 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE---- 80 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----
Confidence 345666778877889999999988776432 2322 2467889999999999999999999999751
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+. ....+..+|.++..+|++++|+..|++++.+ +|.+.....+++.++..++
T Consensus 81 ---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 81 ---PT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHT
T ss_pred ---CC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhc
Confidence 21 2446778999999999999999999988764 5666777788888877665
No 130
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=0.00072 Score=52.98 Aligned_cols=123 Identities=12% Similarity=0.168 Sum_probs=91.8
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++..+...|++..|+.+++.+... .+.. ......+|.++...|++++|+..|++++++.....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~- 72 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR- 72 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-
Confidence 45566777777889999999998877544 2222 24577899999999999999999999998754321
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.....+...+..+|.++..+|++++|+..|++++.+ .| +......++.++..+++
T Consensus 73 ------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 ------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CC-CHHHHHHHHHHHHHHHH
Confidence 112234667889999999999999999999988874 34 35667777777766654
No 131
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=0.00014 Score=70.51 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=102.8
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC-----CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM-----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~-----~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
...+..++..++..|++..|+..|+.+......... ....+.......+.+++.++..+|++++|+.+|+++|++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 445677888888999999999999988765433210 001134556678999999999999999999999999964
Q ss_pred HHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 016258 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLS 382 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~ 382 (392)
.+ +.+..+.++|.++..+|++++|+..|++++++ .|++..+...++.++..+++...
T Consensus 303 -------~p-------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 303 -------DP-------SNTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp -------CT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------Cc-------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 23567889999999999999999999998865 57788888889999888876643
No 132
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.90 E-value=3.8e-06 Score=59.74 Aligned_cols=43 Identities=9% Similarity=0.236 Sum_probs=38.3
Q ss_pred CeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.|.|+|+++++. +|+++ ++||+|++.||.+|. .||.++.++..
T Consensus 3 ~~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 478999999999 99999 999999999999993 59999988765
No 133
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.88 E-value=0.00026 Score=66.66 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
.....+|.++...|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 280 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL--- 280 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 46778899999999999999999998875 122 2456788999999999999999998888765
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHH
Q 016258 357 LTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 357 l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|+......+++.++..+|+.
T Consensus 281 ---~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 281 ---QPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCH
T ss_pred ---CCCcHHHHHHHHHHHHHCCCH
Confidence 577777788888888777653
No 134
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.88 E-value=0.0002 Score=67.52 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=109.2
Q ss_pred HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
.+..|++++|...+... +...+... ....+..++.++...|++..|+.+++.+... .+..
T Consensus 191 ~~~~~~~~~A~~~~~~a-------~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~---- 250 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAA-------VRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPND---- 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC----
T ss_pred HhhcccHHHHHHHHHHH-------HHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCC----
Confidence 34677788887766422 12122200 2235566778887889999999998877544 2222
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
...+..+|.++...|++++|+..|++++++. + +....+..+|.++..+|++++|+..|++++.
T Consensus 251 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 251 ---YLLWNKLGATLANGNQSEEAVAAYRRALELQ-------P-------GYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2367889999999999999999999998761 2 2245678899999999999999999999998
Q ss_pred HHHHh-----hcCCCchHHHHHHHHHHHHHHHH
Q 016258 353 RLESL-----TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 353 i~e~l-----~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+.... ..++.......+++.++..+|+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 86654 22345577788889888888754
No 135
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00029 Score=62.47 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=100.1
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..++..+...|++..|+.+++.+.... ... ..+..+|.++...|++++|+..|++++++.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KDI-------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----ccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3456677888888999999999998876543 222 3678899999999999999999999998755421
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------HHHh-hcCCCchHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR-------------------LESL-TLKPEEAGLEQRR 370 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i-------------------~e~l-~~~p~~a~~l~~~ 370 (392)
......+..+..+|.++..+|++++|+..|++++.+ +++. ..+|.......++
T Consensus 73 -------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 145 (258)
T 3uq3_A 73 -------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145 (258)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 112234677889999999999999999999999983 3333 5677777777788
Q ss_pred HHHHHHHHH
Q 016258 371 LSVLEFLNN 379 (392)
Q Consensus 371 ~~~~~~l~~ 379 (392)
+.++..+|+
T Consensus 146 ~~~~~~~~~ 154 (258)
T 3uq3_A 146 GKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 887776654
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.83 E-value=0.00038 Score=57.01 Aligned_cols=125 Identities=21% Similarity=0.124 Sum_probs=92.0
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
|.....+..++......|++..|+.+++.... +.+... ..+..+|.++...|++++|+..|++++.+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDA-------RYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 33444556677777789999999999877653 334343 35678899999999999999999999875
Q ss_pred HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+.+ ...+.++|.++..+|++++|+..|++++.+.- .+|....+..+....+..+.+.
T Consensus 82 -----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 82 -----DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA---AQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp -----CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TCGGGHHHHHHHHHHHHHHHHH
T ss_pred -----CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHHHhc
Confidence 2332 23567899999999999999999999987754 4455555666666666665543
No 137
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.83 E-value=8.3e-05 Score=68.69 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=88.6
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.++...|++..|+.+++.+.. +.+.. ......++.++...|++++|+..|++++++.......
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALS----IAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----hCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 344466666677777777777766532 22222 2467789999999999999999999999875443221
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.. ....+..+..+|.++..+|++++|+..|++++.+ .|.+.....+++.++..+|+.
T Consensus 230 ~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 230 VT-----VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL------IPQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp CT-----TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCH
T ss_pred cc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------CccchHHHHHHHHHHHHhccH
Confidence 11 1123446778999999999999999998888765 466667777777777776653
No 138
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.80 E-value=0.00013 Score=72.92 Aligned_cols=121 Identities=21% Similarity=0.141 Sum_probs=92.8
Q ss_pred HHHhhhhhhhhhh---------cchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc--------cCHHH
Q 016258 232 AVLGMLGDCCRAM---------GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQA 294 (392)
Q Consensus 232 ~~L~~~c~~C~~~---------gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~--------g~l~~ 294 (392)
..+..++.++... |++.+|+.+++++... .+... ..+..+|.++... |++++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHHHhhccccchHHH
Confidence 4556677777677 8888888888877543 33333 3577888888888 89999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 295 A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~ 374 (392)
|+..|++++++.-. ..+.+..+.++|.++..+|++++|+..|++++.+ +|+......+++.++
T Consensus 240 A~~~~~~al~~~p~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 240 ALSAYAQAEKVDRK-----------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL------DPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHHHCGG-----------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence 99999999976210 1133567889999999999999999999998865 677788888888888
Q ss_pred HHHHHH
Q 016258 375 EFLNNQ 380 (392)
Q Consensus 375 ~~l~~~ 380 (392)
..+++.
T Consensus 303 ~~lg~~ 308 (474)
T 4abn_A 303 EFLSRL 308 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 139
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.80 E-value=0.0011 Score=58.07 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=86.9
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHH---------hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLM---------KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~---------~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~ 307 (392)
.+......|++..|+.+++.+..... .+.... ........++|.++...|++++|+..|++++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS----EISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchh----hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 34455578888888888887643211 111111 111223345999999999999999999999875
Q ss_pred HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+. -...+.++|.++..+|++++|+..|++++.+ +|+++....+++.+|...++
T Consensus 84 -----~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 -----APN-------NVDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp -----CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHH
T ss_pred -----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhH
Confidence 233 2456888999999999999999999988864 78888889999998876654
No 140
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.79 E-value=0.0002 Score=62.94 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhh----------------hhhhhhhhcchhHHHh
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGM----------------LGDCCRAMGDADAAVA 252 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~----------------~c~~C~~~gdhh~a~~ 252 (392)
.+...+..|++++|...|..... .-|.....+.+ ++.++..+|++..|+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--------------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 34477889999999988853321 11222223333 7888888999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 253 YFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 253 ~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.++.+... .+... ..+..+|.++...|++++|+..|++++++
T Consensus 76 ~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQK----APNNV-------DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHH----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99877543 33333 36788999999999999999999999875
No 141
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.79 E-value=0.00042 Score=59.99 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHhhcHHHHHHHhh
Q 016258 191 MRAFRAQNVESAKSRLS 207 (392)
Q Consensus 191 ~~a~~~g~~~~A~~~~~ 207 (392)
...+..|++++|...+.
T Consensus 16 ~~~~~~~~~~~A~~~~~ 32 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIE 32 (225)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 35667888888888774
No 142
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.78 E-value=0.00011 Score=70.29 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
...++.++...|++++|+..|++++++ .+ +....+..+|.++..+|++++|+..|++++.+
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----- 164 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQY-------NP-------DLYCVRSDLGNLLKALGRLEEAKACYLKAIET----- 164 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHH-------CT-------TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CC-------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 445555555555555555555555432 12 12334566778888888888888777776643
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|..+....+++.++...|+
T Consensus 165 -~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 165 -QPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTC
T ss_pred -CCCCHHHHHHHHHHHHHcCC
Confidence 67777777777777766554
No 143
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.74 E-value=4.9e-06 Score=67.16 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=1.0
Q ss_pred CCeeccccccccccC-----------------ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258 88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
++-.|+||++.|.+. .+.++|+|.|+..||..|. .||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456899999998631 2235899999999999994 5999998653
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.73 E-value=0.0012 Score=51.00 Aligned_cols=114 Identities=23% Similarity=0.358 Sum_probs=86.1
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++..+...|++..++.+++++... .+... .....++.++...|++++|+..|++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 4555677777788999999888877543 22222 35678899999999999999999999864
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l 377 (392)
.+. ....+..++.++..+|++++|+..|++++.+ .|.+.....+++.++..+
T Consensus 73 ~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 73 DPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhc
Confidence 122 1345678999999999999999998888754 577777788888777654
No 145
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.72 E-value=0.00047 Score=61.36 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+..... ..+. ....+..++.++...|++..|+.+++++... .+..
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~-------~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~- 104 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALE-------IDPS-------SADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRN- 104 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHH-------HCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHcCChHHHHHHHHHHHh-------cCCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCc-
Confidence 3355678888888877743221 1111 1223334444444555555555555544322 1111
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL 303 (392)
......++.++...|++++|+..|++++
T Consensus 105 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 105 ------ARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1233444555555555555555555544
No 146
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.72 E-value=0.00016 Score=61.54 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=88.1
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+... +...+. +...+..++..+...+++..+...+..+.. +.+...
T Consensus 46 a~~~~~~~~~~~a~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~----~~~~~~ 107 (184)
T 3vtx_A 46 GKTYMDIGLPNDAIESLKKF-------VVLDTT-------SAEAYYILGSANFMIDEKQAAIDALQRAIA----LNTVYA 107 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------HHHCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHH-------HhcCch-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccch
Confidence 33455677888777766422 112222 223445566666677888888877766543 233333
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.....+|.++...|++++|+..|++++++ .+. .+..+.++|.++..+|++++|+..|++
T Consensus 108 -------~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 108 -------DAYYKLGLVYDSMGEHDKAIEAYEKTISI-------KPG-------FIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCchhHHHHHHHHHHh-------cch-------hhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35678899999999999999999999875 232 255788999999999999999999999
Q ss_pred HHHH
Q 016258 350 AIKR 353 (392)
Q Consensus 350 al~i 353 (392)
++++
T Consensus 167 al~~ 170 (184)
T 3vtx_A 167 ALEK 170 (184)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9865
No 147
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.70 E-value=0.0011 Score=62.86 Aligned_cols=135 Identities=16% Similarity=0.094 Sum_probs=102.1
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
+..+...+.+....|++..+..+++++... ...... ......+..+|.++...|++++|+..|++++++.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEE---LPPGWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCch---hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 455566677777789999999888877543 222221 23445788999999999999999999999999876521
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL--KPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~--~p~~a~~l~~~~~~~~~l~~ 379 (392)
.....+..+.++|.++..+|++++|+.+|++++.+.+.... +|..+....+++.++..+|+
T Consensus 88 --------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 88 --------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred --------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 12245667889999999999999999999999999998732 35666677778888776654
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.70 E-value=0.002 Score=51.39 Aligned_cols=122 Identities=11% Similarity=-0.068 Sum_probs=89.6
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++..+...|++..|+.+++.+... .+.. ......+|.++...|++++|+..|++++++.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 73 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR----NPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELD----- 73 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh----CcCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----
Confidence 34566777887899999999998877544 2222 2467889999999999999999999998752
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+. ....+.++|.++..+|++++|+..|++++.+-... .......+...+..+......
T Consensus 74 --p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 74 --GQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCTTHHHHHHHHHHHHHHH
T ss_pred --ch-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 22 24567889999999999999999999999887663 112234455555555444433
No 149
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.69 E-value=0.00035 Score=61.47 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=92.4
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+.... ...+ .....+..++.++...|++..|+.+++.+... .+...
T Consensus 66 ~~~~~~~~~~A~~~~~~~~-------~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~-- 125 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKAL-------ELDS-------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMENG-- 125 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TCCSH--
T ss_pred HHHHcCCHHHHHHHHHHHH-------HcCC-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCH--
Confidence 4556777777777664221 1111 12334555667776788888888888776443 22222
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.....++.++...|++++|+..|++++++. +. ....+..+|.++..+|++++|+..|++++
T Consensus 126 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 126 -----DLFYMLGTVLVKLEQPKLALPYLQRAVELN-------EN-------DTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp -----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------Cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 246677888888889999988888887652 11 13356678888888888888888877776
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+ .|.+......++.++..+|+
T Consensus 187 ~~------~~~~~~~~~~la~~~~~~~~ 208 (243)
T 2q7f_A 187 EQ------DPGHADAFYNAGVTYAYKEN 208 (243)
T ss_dssp HH------CTTCHHHHHHHHHHHHHTTC
T ss_pred Hh------CcccHHHHHHHHHHHHHccC
Confidence 53 45556666667776665544
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00042 Score=55.08 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+.++|..+...|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PE-------DARGYSNRAAALAKLMSFPEAIADCNKAIEK-- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 4578889999999999999999999998762 22 2457889999999999999999999998865
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|.+.....+++.++..+|+.
T Consensus 68 ----~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 68 ----DPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCH
T ss_pred ----CCCcHHHHHHHHHHHHHHhCH
Confidence 678888888889888887764
No 151
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.68 E-value=0.00047 Score=57.52 Aligned_cols=143 Identities=15% Similarity=0.078 Sum_probs=97.9
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+.... ...+.+ ...+..++.++...|++..|+.+++..... .+...
T Consensus 17 ~~~~~~~~~~A~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-- 76 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVY-------DADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD----APDNV-- 76 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTC-------CTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred HHHHhcCHHHHHHHHHHHH-------HhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCH--
Confidence 5567888888888775321 111111 234556677776788888888888776543 22222
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.....++.++...|++++|+..|++++++ .+. ....+..+|.++..+|++++|+..|++++
T Consensus 77 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 77 -----KVATVLGLTYVQVQKYDLAVPLLIKVAEA-------NPI-------NFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CcH-------hHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 35677888888889999999999888865 121 13456778888999999999998888877
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+ .|........++.++..+|+
T Consensus 138 ~~------~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 138 GL------RPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HH------CTTCHHHHHHHHHHHHHTTC
T ss_pred hc------CccchHHHHHHHHHHHHcCC
Confidence 54 35666667777777766654
No 152
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.67 E-value=0.00062 Score=50.24 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
......+|.++...|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-- 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 3467889999999999999999999999651 22 1446778999999999999999999988865
Q ss_pred HhhcCCCchHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+|.+.....+++.++..+|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 5777788888888876553
No 153
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.66 E-value=0.0001 Score=66.53 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=78.9
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.+...+..|++++|...+... +...+.+ ...+..++.++...|++..|+.+++.+.. .. ..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~-------l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~-~~ 69 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKL-------EAKKYNS-------PYIYNRRAVCYYELAKYDLAQKDIETYFS----KV-NA 69 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-------HHTTCCC-------STTHHHHHHHHHHTTCHHHHHHHHHHHHT----TS-CT
T ss_pred HHHHHHHhcCHHHHHHHHHHH-------HHhCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cc-Cc
Confidence 344667889999998887533 1222222 22445566677678888888888776643 11 12
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
..+ +......+|.++...|++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|+
T Consensus 70 ~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 70 TKA---KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR-------LDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC-------THHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred hhH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHccCHHHHHHHHH
Confidence 211 23456788888888888888888888888641 111 2345566666666666666666654
Q ss_pred HHH
Q 016258 349 EAI 351 (392)
Q Consensus 349 eal 351 (392)
+++
T Consensus 133 ~al 135 (272)
T 3u4t_A 133 KQI 135 (272)
T ss_dssp GGC
T ss_pred HHh
Confidence 443
No 154
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.65 E-value=0.00018 Score=73.26 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=91.3
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~ 310 (392)
...+..++.++...|++.+|+.+++++.. +.+.. ...+..+|.++...|++++|+..|++++++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 86 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDA----- 86 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 34566778888788999999988877653 23333 236788999999999999999999999975
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l 377 (392)
.+. ....+.++|.++..+|++++|+..|++++++ +|++.....+++.++..+
T Consensus 87 --~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 87 --APE-------HPGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp --CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred --CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Confidence 222 2456788999999999999999999988765 577777888888888777
No 155
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.65 E-value=0.00038 Score=66.57 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
...+|.++...|++++|+..|++++++ .+ +....+.++|.++...|++++|+..|++++.
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------ 231 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTL-------DP-------NFLDAYINLGNVLKEARIFDRAVAAYLRALS------ 231 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-------CT-------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------
Confidence 344444444445555555554444432 11 1133455566666666666666665555544
Q ss_pred cCCCchHHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+|++.....+++.++..+|+.
T Consensus 232 ~~p~~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 232 LSPNHAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCH
T ss_pred hCcCCHHHHHHHHHHHHHcCCH
Confidence 3577777777788877766653
No 156
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.63 E-value=0.0012 Score=59.53 Aligned_cols=163 Identities=9% Similarity=-0.042 Sum_probs=110.0
Q ss_pred hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
.-.+...+..|++++|...|... +...+.+. .....+.+++.+++.+|++..|+..++..... .+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~p 83 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAV-------FTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQI----YQ 83 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------GGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-------HHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----CC
Confidence 34455778899999998887522 22222221 11346677888888999999999998876543 22
Q ss_pred CChhHHHHHHHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcch----------hhHHHHHH
Q 016258 267 DDLEIIHTLSVSLNKIGDLKYY--------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----------LDVAVSLA 328 (392)
Q Consensus 267 ~~~e~~~~ls~~~~~lg~l~~~--------~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~----------~dla~sl~ 328 (392)
..+. ...++-.+|.++.. .|++++|+..|++.++.. +.+.... ..++...-
T Consensus 84 ~~~~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~ 152 (261)
T 3qky_A 84 IDPR----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQKIRELRAKLARKQY 152 (261)
T ss_dssp TCTT----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCch----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHHHHHHHHHHHHHHH
Confidence 2221 23567889999988 899999999999988642 2221110 11222336
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
++|.++..+|++++|+..|++++... ...+.....+.+++.+|..+|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhc
Confidence 78999999999999999998887532 222335567788888887774
No 157
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.62 E-value=0.00012 Score=73.16 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=107.1
Q ss_pred HHHHHHhhcH-HHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258 190 AMRAFRAQNV-ESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 190 a~~a~~~g~~-~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
+...+..|++ ++|...+... +... |.+...+..++.++...|++.+|+.+++.+... .+.
T Consensus 109 g~~~~~~g~~~~~A~~~~~~a-------l~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~- 169 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKA-------VKLE-------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----CKN- 169 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHH-------HHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCC-
T ss_pred HHHHHhccccHHHHHHHHHHH-------HhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-
Confidence 3355677888 8888777522 2222 223446677888888899999999998877533 222
Q ss_pred hhHHHHHHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc--
Q 016258 269 LEIIHTLSVSLNKIGDLKYYG---------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI-- 337 (392)
Q Consensus 269 ~e~~~~ls~~~~~lg~l~~~~---------g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~-- 337 (392)
...+.++|.++... |++++|+..|++++++ .+. ....+.++|.++..+
T Consensus 170 -------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 170 -------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVL-------DGRSWYILGNAYLSLYF 228 (474)
T ss_dssp -------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHHHH
Confidence 14688899999988 8888888888888765 332 245678899999988
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHHHHH
Q 016258 338 ------GNEDVAVDGFQEAIKRLESLTLKP---EEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 338 ------g~~~~A~~~~~eal~i~e~l~~~p---~~a~~l~~~~~~~~~l~~~ 380 (392)
|++++|+..|++++.+ +| .++....+++.+|..+|+.
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred hhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCH
Confidence 8899999999998876 56 7888889999998887754
No 158
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.62 E-value=0.00059 Score=57.34 Aligned_cols=86 Identities=9% Similarity=-0.058 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
-...+..+|..+...|++++|+..|++++++ .+. -+..+.++|.++..+|++++|+..|++++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~P~-------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l- 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFY-------NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL- 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence 3457889999999999999999999998865 333 2556788999999999999999999999865
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 355 ESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 355 e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++.....+++.+|..+|+.
T Consensus 100 -----~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 100 -----GKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp -----SSSCCHHHHHHHHHHHHTTCH
T ss_pred -----CCCCcHHHHHHHHHHHHcCCH
Confidence 688888899999999888864
No 159
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.59 E-value=9.7e-05 Score=72.09 Aligned_cols=139 Identities=13% Similarity=0.024 Sum_probs=83.6
Q ss_pred HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcc-hhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGD-ADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gd-hh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
.+..|++++|...+..+ +. .-|.+...+..++.+...+|+ +.+|+..++++... .+...
T Consensus 107 ~~~~g~~~~Al~~~~~a-------l~-------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~-- 166 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDA-------IE-------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNY-- 166 (382)
T ss_dssp HHHTCCCHHHHHHHHHH-------HH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCH--
T ss_pred HHHCCChHHHHHHHHHH-------HH-------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCH--
Confidence 34567788887777522 11 223344556666777767785 88888877766432 33333
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
..+.++|.++..+|++++|+..|+++|++ .+. -...+.++|.++..+|++++|+..|++++
T Consensus 167 -----~a~~~~g~~~~~~g~~~eAl~~~~kal~l-------dP~-------~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 167 -----QVWHHRRVLVEWLRDPSQELEFIADILNQ-------DAK-------NYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp -----HHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------Ccc-------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 35677777777778888888888877754 222 13345666666666666666666666665
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~ 376 (392)
.+ +|.+.....+++.++..
T Consensus 228 ~l------~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 228 KE------DVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HH------CTTCHHHHHHHHHHHHH
T ss_pred Hh------CCCCHHHHHHHHHHHHH
Confidence 43 44444444444444444
No 160
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.00023 Score=65.59 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=83.3
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
+..++.++...|++..|+.+++.+.... +... .....++.++...|++++|+..|++++++ .
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~ 189 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCH-------LPMLYIGLEYGLTNNSKLAERFFSQALSI-------A 189 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------C
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhc----cccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------C
Confidence 4445555556667777776666554332 1111 13444777777778888887777777653 2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHHHHH
Q 016258 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL---KPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~---~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+. ....+..+|.++..+|++++|+..|++++.+...... .|..+....+++.++..+|+.
T Consensus 190 ~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 190 PE-------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred CC-------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 22 2456788999999999999999999999999877622 256667788888888777653
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.59 E-value=0.0028 Score=51.98 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=78.6
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
.....+..++..++..|++..|+.+++.+... .+.. ......+|.++...|++++|+..|++++++.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD-- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 34456677888888899999999998877543 2222 2467789999999999999999999999762
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 78 -----~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 78 -----KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp -----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22 2446778999999999999999999988865
No 162
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.58 E-value=0.0023 Score=61.97 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=76.7
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
..+..++.++...|++..|+.+++.... +.+........+. .....++.++...|++++|+..|++++++.
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456667777778888888888877653 2333333322221 123445888888999999999999988642
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+.+. ......+..++.++..+|++++|+..|++++.+ +|++......++.++..+|
T Consensus 288 -------p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 288 -------PSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp -------CSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred -------Ccch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhc
Confidence 1111 112334566777777777777777776666543 3444444444554444433
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00055 Score=66.30 Aligned_cols=146 Identities=10% Similarity=0.020 Sum_probs=104.8
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
.-+..|++++|...+........ ... .-.........++.+....|++..++.+++.+............
T Consensus 64 ~y~~~~~~~~a~~~~~~~~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 133 (434)
T 4b4t_Q 64 LYVTMGAKDKLREFIPHSTEYMM----QFA----KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL-- 133 (434)
T ss_dssp HHHHHTCHHHHHHHHHHTHHHHH----TSC----HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS--
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH----Hcc----chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH--
Confidence 44577888888877754322211 111 00111234455666665678889999999998877777655332
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
......+|+.++...|++.+|+..+++.+....... + ...++..+..++.++..+|++.+|..+|++++
T Consensus 134 ---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 134 ---KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD----D----KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS----C----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc----c----chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 345788999999999999999999999887654321 1 12567788999999999999999999999999
Q ss_pred HHHHHhh
Q 016258 352 KRLESLT 358 (392)
Q Consensus 352 ~i~e~l~ 358 (392)
.+...+.
T Consensus 203 ~~~~~~~ 209 (434)
T 4b4t_Q 203 TAANSIY 209 (434)
T ss_dssp HHHHHSC
T ss_pred HHhhcCC
Confidence 9988773
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.58 E-value=0.00041 Score=69.56 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=88.3
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++..+...|++.+|+.+++++.+. .+.. ...+.++|.++..+|++++|+..|++++++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 69 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------ 69 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34556677777889999999999888654 2222 357889999999999999999999999976
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV 373 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~ 373 (392)
.+. .+..+.++|.++..+|++++|+..|++++++ +|++.....+++.+
T Consensus 70 -~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 70 -DKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQEC 117 (477)
T ss_dssp -CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHH
T ss_pred -CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 222 2557889999999999999999999999875 56666677777776
No 165
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.55 E-value=0.00066 Score=68.61 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=79.0
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
.++..+...|++.+|+.++++... +.+... .....++.++...|++++|+..|++++++ .+.
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 473 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAAR----LFQGTH-------LPYLFLGMQHMQLGNILLANEYLQSSYAL-------FQY 473 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----TTTTCS-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCccch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC
Confidence 344444455666666666655432 122221 24566777777777777777777777654 122
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHH
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE-AGLEQRRLSVLEFLNN 379 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~-a~~l~~~~~~~~~l~~ 379 (392)
....+..++.++...|++++|+.+|++++++......+|+. +.....++.++..+|+
T Consensus 474 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 474 -------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred -------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 13457889999999999999999999999987766556664 5666777777766654
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.55 E-value=0.00063 Score=56.93 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
....+..+|.++...|++++|+..|++++++. +. .+..+.++|.++..+|++++|+..|++++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PA-------NPIYLSNRAAAYSASGQHEKAAEDAELATVV- 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------Cc-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence 44578899999999999999999999999762 22 2557889999999999999999999998875
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 355 ESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 355 e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|.+.....+++.++..+|+.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCH
T ss_pred -----CCCCHHHHHHHHHHHHHccCH
Confidence 678888888899988887764
No 167
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.55 E-value=0.00093 Score=67.49 Aligned_cols=118 Identities=17% Similarity=0.122 Sum_probs=88.2
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.++...|++.+|+.++++..+.....+..-.. ....+..++.++...|++++|+..|++++++.
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 546 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP----WAATWANLGHAYRKLKMYDAAIDALNQGLLLS------ 546 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG----GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------
Confidence 34455667767888899999998887665554332211 13478899999999999999999999998762
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVL 374 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~ 374 (392)
+. ....+..++.++...|++++|+..|++++++ +|++......++.+|
T Consensus 547 -p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 547 -TN-------DANVHTAIALVYLHKKIPGLAITHLHESLAI------SPNEIMASDLLKRAL 594 (597)
T ss_dssp -SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHTT
T ss_pred -CC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHH
Confidence 22 2457788999999999999999999888764 677766666665554
No 168
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00075 Score=51.74 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
..+..+|.++...|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-------QPQ-------NPVGYSNKAMALIKLGEYTQAIQMCQQGLR---- 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----
Confidence 46788999999999999999999999976 222 145678999999999999999999888875
Q ss_pred hhcCCCc------hHHHHHHHHHHHHHHH
Q 016258 357 LTLKPEE------AGLEQRRLSVLEFLNN 379 (392)
Q Consensus 357 l~~~p~~------a~~l~~~~~~~~~l~~ 379 (392)
.+|++ .....+++.++..+|+
T Consensus 67 --~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 67 --YTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp --SCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred --hCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 35665 6667788888888773
No 169
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.52 E-value=0.0019 Score=59.88 Aligned_cols=128 Identities=11% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
..+..++.++...|++..|+.+++.+... .+........+. ...-.++.++...|++++|+..|++++++.
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556667777788888888887766432 333332211111 123345788888899999999999888642
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+.+. .-....+..+|.++..+|++++|+..|++++.+ +|++.....+++.++..+|+
T Consensus 265 -------~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 265 -------PSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp -------CSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred -------CCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCC
Confidence 2211 112334566788888888888888888777664 56666667777777766554
No 170
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.51 E-value=0.0039 Score=57.11 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=95.0
Q ss_pred hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
...+...+..|++++|...+.... ...+ .+...+..++.++...|++..|+.+++.+... .+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~ 86 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVC-------QAAP-------EREEAWRSLGLTQAENEKDGLAIIALNHARML----DP 86 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-------HhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----Cc
Confidence 334456778899999988875321 1112 22334555677776788888888888776543 22
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--------------------------------------
Q 016258 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD-------------------------------------- 308 (392)
Q Consensus 267 ~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~-------------------------------------- 308 (392)
... .....++.++...|++++|+..|+++++....
T Consensus 87 ~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 87 KDI-------AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 222 35667788888888888888888887753111
Q ss_pred ----HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 309 ----AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 309 ----~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+....+ +....+..+|.++..+|++++|+..|++++.+ .|++......++.++..+|
T Consensus 160 ~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 160 LLHAALEMNP-------NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL------RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp HHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC
Confidence 111111 11334566788888888888888887776653 3455555555555555444
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.50 E-value=0.0026 Score=48.64 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=81.5
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++..+...|++..++.+++.+... .+.. ......+|.++...|++++|+..|++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 68 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------ 68 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence 4455677777889999999998877543 2222 2367788999999999999999999998752
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV 373 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~ 373 (392)
+. ....+..+|.++..+|++++|+..|++++. .+|.+......++.+
T Consensus 69 -~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 69 -PD-------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK------HEANNPQLKEGLQNM 115 (118)
T ss_dssp -TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTCHHHHHHHHHH
T ss_pred -cc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHh
Confidence 22 244677899999999999999988887764 356666666655554
No 172
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.50 E-value=0.00042 Score=60.14 Aligned_cols=117 Identities=16% Similarity=0.076 Sum_probs=88.0
Q ss_pred hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
..++......|++..|+.+++.+ +.. . .....++|.++...|++++|+..|++++++. +
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a------~~~-~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~ 68 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV------QDP-H-------SRICFNIGCMYTILKNMTEAEKAFTRSINRD-------K 68 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS------SSC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH------cCC-C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence 34566766788998888887654 222 1 2478899999999999999999999999762 2
Q ss_pred CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------cCCCchHHHHHHHHHHHHHHH
Q 016258 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT----------LKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~----------~~p~~a~~l~~~~~~~~~l~~ 379 (392)
. .+..+.++|.++..+|++++|+..|++++.+...-. ..|.......+++.++..+|+
T Consensus 69 ~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 69 H-------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred c-------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 2 245678999999999999999999999987643321 334555777788888776664
No 173
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.49 E-value=0.0015 Score=56.30 Aligned_cols=122 Identities=9% Similarity=0.020 Sum_probs=86.6
Q ss_pred HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHH
Q 016258 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~ 308 (392)
....+..++.++...|++..|+.+++.+... .+.. ......++.++... |++++|+..|+++++
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---- 105 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALA---- 105 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----
Confidence 3445566667776778888888877766443 2222 23567788888888 899988888888775
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+.. .+....+..+|.++..+|++++|+..|++++.+ .|.+......++.++..+|+.
T Consensus 106 ----~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 106 ----DPTY----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp ----STTC----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCH
T ss_pred ----CcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCH
Confidence 1111 145667788999999999999999888887653 566677788888888777654
No 174
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.47 E-value=0.00055 Score=60.21 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=93.9
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+... +...+. ....+..++.++...|++..|+.+++.+... .+..
T Consensus 32 ~~~~~~~~~~A~~~~~~~-------l~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~--- 90 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKA-------IEENKE-------DAIPYINFANLLSSVNELERALAFYDKALEL----DSSA--- 90 (243)
T ss_dssp ----------CCTTHHHH-------HTTCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHhhCHHHHHHHHHHH-------HHhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc---
Confidence 455677777777766422 112222 2345566777877889999999988877544 2222
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
......++.++...|++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|++++
T Consensus 91 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 91 ----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2457788999999999999999999998752 211 3356789999999999999999999887
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 352 KRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+ .|.+..+...++.++..+|+
T Consensus 153 ~~------~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 153 EL------NENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HH------CTTCHHHHHHHHHHHHHHTC
T ss_pred Hh------CCccHHHHHHHHHHHHHcCC
Confidence 64 45556666677777666553
No 175
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.47 E-value=0.00071 Score=65.92 Aligned_cols=121 Identities=9% Similarity=0.023 Sum_probs=95.4
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD-LQAARSYYVRSLNVR 306 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~-l~~A~~~ye~sL~i~ 306 (392)
|.+...+.+++.+....|++.+|+..++.+.. +.+... .++..+|.++..+|+ +++|+..|+++|++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~-------~a~~~~g~~l~~~g~d~~eAl~~~~~al~l- 161 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE- 161 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHH-
Confidence 55566777888888788999999999887753 334333 367889999999996 99999999999865
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.+. ....+.++|.++..+|++++|+..|++++. .+|.+.....+++.++..+|+
T Consensus 162 ------~P~-------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~------ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 162 ------QPK-------NYQVWHHRRVLVEWLRDPSQELEFIADILN------QDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp ------CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTC
T ss_pred ------CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCccCHHHHHHHHHHHHHcCC
Confidence 232 255788999999999999999999998875 367777777888888777764
No 176
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.45 E-value=0.0023 Score=62.01 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=88.0
Q ss_pred hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
+..+...|++..|+.+++..... .+.... ........++.++...|++++|+..|++++++ .+.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~p~-- 327 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT----EPSIAE---YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-------EPD-- 327 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CCSSHH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCcchH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Ccc--
Confidence 67777889999999888877542 333332 23457888999999999999999999999876 222
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
....+..+|.++..+|++++|+..|+++++ .+|++......++.+...+++
T Consensus 328 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 328 -----NVNALKDRAEAYLIEEMYDEAIQDYETAQE------HNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TSSSCHHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHhhc
Confidence 245678899999999999999999888876 367777777777766555544
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.0025 Score=51.25 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=83.8
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++..+...|++..|+.+++.+.. +.+.. .........++.++...|++++|+..|++++++
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 94 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG----LDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------- 94 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------
Confidence 455667777788999999998877643 22322 223567889999999999999999999999875
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV 373 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~ 373 (392)
.+. ....+.++|.++..+|++++|+..|++++.+ +|.+..+...++.+
T Consensus 95 ~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 95 DGG-------DVKALYRRSQALEKLGRLDQAVLDLQRCVSL------EPKNKVFQEALRNI 142 (148)
T ss_dssp TSC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHH
T ss_pred Ccc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHH
Confidence 222 1446778999999999999999999888764 46655555555444
No 178
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.44 E-value=0.0025 Score=59.04 Aligned_cols=116 Identities=11% Similarity=0.029 Sum_probs=89.1
Q ss_pred hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~ 317 (392)
+..+...|++..|+.+++..... .+.... ........+|.++...|++++|+..|++++++ .+.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~-- 304 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKT----EPSVAE---YTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------EPD-- 304 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----CCSSHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCCchH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------Ccc--
Confidence 55666788889999888776543 233332 23445778999999999999999999999876 222
Q ss_pred cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
....+..+|.++..+|++++|+..|++++++ +|++......++.+...+++.
T Consensus 305 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 305 -----NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH------NENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHHHHh
Confidence 2456788999999999999999998888754 688888888888888777654
No 179
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.44 E-value=0.0019 Score=49.61 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
..+..+|.++...|++++|+..|++++++ .+.. ...+..+|.++..+|++++|+..|++++.+...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET-------DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 35778999999999999999999999975 2322 336778999999999999999999999998765
Q ss_pred h
Q 016258 357 L 357 (392)
Q Consensus 357 l 357 (392)
.
T Consensus 74 ~ 74 (100)
T 3ma5_A 74 E 74 (100)
T ss_dssp H
T ss_pred C
Confidence 5
No 180
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.43 E-value=0.0018 Score=64.30 Aligned_cols=64 Identities=14% Similarity=-0.005 Sum_probs=45.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 290 g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+.+..+...|.+++...+.+.+..+.+......++..+..+|.++...|++++|+..|++++.+
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 3445555566667777777777777765555667778888999999999999999888776653
No 181
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.41 E-value=0.00093 Score=57.89 Aligned_cols=135 Identities=14% Similarity=0.000 Sum_probs=94.9
Q ss_pred HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e 270 (392)
...+..|++++|...+.... .. ....+..++.++...|++..|+.+++.+... .+..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----------~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~-- 70 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----------DP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKHL-- 70 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----------SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC--
T ss_pred HHHHHhCCHHHHHHHHHHHc----------CC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cccc--
Confidence 35667889999988876331 11 1245667788887899999999999887544 2222
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC--CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~--~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
...+.++|.++...|++++|+..|++++++........-.. ..........+.++|.++..+|++++|+..|+
T Consensus 71 -----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 71 -----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 24678999999999999999999999987532100000000 00112345678899999999999999999999
Q ss_pred HHHHH
Q 016258 349 EAIKR 353 (392)
Q Consensus 349 eal~i 353 (392)
+++.+
T Consensus 146 ~al~~ 150 (213)
T 1hh8_A 146 LATSM 150 (213)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 88765
No 182
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.40 E-value=0.001 Score=61.11 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=91.3
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++.++...|++..|+.+++.+... .+... .....++.++...|++++|+..|++++++.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----- 236 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVEL----RPDDA-------QLWNKLGATLANGNRPQEALDAYNRALDIN----- 236 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 45666777877889999999988877543 22222 357889999999999999999999998752
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC------chHHHHHHHHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE------EAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~------~a~~l~~~~~~~~~l~~~ 380 (392)
+. ....+..+|.++..+|++++|+..|++++.+......... .......++.++..+|+.
T Consensus 237 --~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 237 --PG-------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred --CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 21 2446778999999999999999999999876543211001 556677788888777654
No 183
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00012 Score=54.95 Aligned_cols=45 Identities=29% Similarity=0.604 Sum_probs=37.2
Q ss_pred CCeeccccccccc-cCceeccCC-----CcchHHhHHhc------CCCCCCCCCccc
Q 016258 88 GPLSCMICQALLF-ECSKCTPCS-----HVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~-~~p~~~~C~-----h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
+...|.||++.+. +.+.++||. |.|...||.+| ..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4578999997764 358889996 99999999999 269999998764
No 184
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.37 E-value=0.0024 Score=63.26 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=88.9
Q ss_pred hcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHh---------CC--
Q 016258 197 QNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMK---------LP-- 265 (392)
Q Consensus 197 g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~---------L~-- 265 (392)
+++..|...+..+.......+...+.+.......+..+..++......|++..|+.+++.+...... +.
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 3344444444444444444455455554444444555556666655666666666666554322100 00
Q ss_pred -CCChhHH----------HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHH
Q 016258 266 -MDDLEII----------HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD 334 (392)
Q Consensus 266 -~~~~e~~----------~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~ 334 (392)
+...+.. .........+|.++...|++++|+..|++++++ .+.. ...+..+|.++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~la~~~ 354 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPEN-------VYPYIQLACLL 354 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------SHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHH
Confidence 0000000 001234556666666677777777777666653 1211 23566778888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 335 RSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 335 ~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
..+|++++|+..|++++.+ +|.+.....+++.++..+|+.
T Consensus 355 ~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK------FPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCH
Confidence 8888888888777777654 567677777777777766653
No 185
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.36 E-value=0.0046 Score=48.09 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=76.1
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
+..++..+...|++..++.+++..... .+.. ......++.++...|++++|+..|++++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL----DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc----CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------
Confidence 344566666778888888887766432 2222 2345677888888899999999988887541
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
+. ....+..++.++...|++++|+..|++++.+ .|........++.++..+|
T Consensus 66 ~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 66 PR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp TT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTT
T ss_pred CC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHHc
Confidence 11 1335667888888999999888888877754 3444555555666655444
No 186
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.36 E-value=0.0023 Score=53.03 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+..+|.++...|++++|+..|++++.+ .+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHY-------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------Ccc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 346778899999999999999999998864 232 2446778999999999999999999998764
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++.....+++.++..+|+.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCH
T ss_pred ----CCCCchHHHHHHHHHHHcCCH
Confidence 577888888889888877764
No 187
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.35 E-value=7.2e-05 Score=57.60 Aligned_cols=43 Identities=28% Similarity=0.698 Sum_probs=37.2
Q ss_pred eeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
.+|++|.-.+..-.+++||.|.||..|+..| ..||.|+.++..
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4699998887767999999999999999876 359999998776
No 188
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.35 E-value=0.0019 Score=57.35 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
...+..++..+...|++..|+.+++.+... .+.. ......++.++...|++++|+..|++++++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSS-------ADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667788877889999999998877544 2222 246778899999999999999999998875
No 189
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.33 E-value=0.0056 Score=56.79 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=73.8
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
+..++.+...+|++..|+..++..... .+... ...+... +..+....|++++|+..|+++++. .
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~----~p~~~--~~~l~~a---~~~l~~~~~~~~eA~~~~~~~l~~-------~ 196 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQ----DEDAT--LTQLATA---WVSLAAGGEKLQDAYYIFQEMADK-------C 196 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH--HHHHHHH---HHHHHHCTTHHHHHHHHHHHHHHH-------S
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh----CcCcH--HHHHHHH---HHHHHhCchHHHHHHHHHHHHHHh-------C
Confidence 334555555677777777777665433 22221 1111111 112233346777777777776643 3
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+. -+..+..+|.++..+|++++|+..|++++. .+|+++..+.+++.++..+|+.
T Consensus 197 p~-------~~~~~~~la~~~~~~g~~~eA~~~l~~al~------~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 197 SP-------TLLLLNGQAACHMAQGRWEAAEGVLQEALD------KDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp CC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCC
T ss_pred CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCC
Confidence 32 144677888999999999999888888775 3688888888888877776653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00065 Score=64.76 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=81.0
Q ss_pred HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC--CCChh----HHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016258 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP--MDDLE----IIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~--~~~~e----~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~ 301 (392)
+.....+...+..++..|++..|+..|+.+........ ..... ........+.+++.++..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455677788888889999999999988754421100 00011 1112224788999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 016258 302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLE 375 (392)
Q Consensus 302 sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~ 375 (392)
+|++ .+. .+..+.++|.++..+|++++|+..|++++.+ +|.+......++.+..
T Consensus 256 al~~-------~p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 256 VLTE-------EEK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRALAE 309 (338)
T ss_dssp HHHH-------CTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH
Confidence 9975 222 2456889999999999999999998888765 3455555555555433
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.32 E-value=0.0012 Score=63.90 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC-CC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-NV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~-~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.......+..+|..+...|++++|+..|+++|++......... +. .......+..+.++|.++..+|++++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3345567889999999999999999999999997655321100 00 001234567788999999999999999999998
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 350 AIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 350 al~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
++++ +|+++....+++.+|..+++.
T Consensus 299 al~~------~p~~~~a~~~lg~~~~~~g~~ 323 (370)
T 1ihg_A 299 ALEI------DPSNTKALYRRAQGWQGLKEY 323 (370)
T ss_dssp HHTT------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh------CchhHHHHHHHHHHHHHccCH
Confidence 8863 688888888999998887754
No 192
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.31 E-value=0.0036 Score=48.70 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~ 359 (392)
-.||...+..|++..|+..|+++++..... .. .-...+..+..||.++..+|+++.|+.+|++++.+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~----~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l------ 75 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEG----EI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------ 75 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhcc----CC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Confidence 478999999999999999999999765321 10 11245667899999999999999999999988753
Q ss_pred CCCchHHHHHHH
Q 016258 360 KPEEAGLEQRRL 371 (392)
Q Consensus 360 ~p~~a~~l~~~~ 371 (392)
.|++...+.++.
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 688888888887
No 193
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.31 E-value=0.00092 Score=63.58 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~-~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.......+.++|.++...|++++|+..|++++++.........+... .....+..+.++|.++..+|++++|+..|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44456788999999999999999999999999874321100000000 01123567889999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+.+ +|.++..+.+++.+|..+++.
T Consensus 223 l~~------~p~~~~a~~~lg~~~~~~g~~ 246 (336)
T 1p5q_A 223 LEL------DSNNEKGLSRRGEAHLAVNDF 246 (336)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHh------CCCcHHHHHHHHHHHHHCCCH
Confidence 875 678888888999988877653
No 194
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.30 E-value=0.0023 Score=51.04 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+..+|.++...|++++|+..|++++++. +. ....+.++|.++..+|+++.|+..|++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PL-------VAVYYTNRALCYLKMQQPEQALADCRRALEL-- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 3467889999999999999999999999762 22 2456788999999999999999999988864
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|.......+++.++..+|+.
T Consensus 73 ----~p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 73 ----DGQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCH
T ss_pred ----CchhHHHHHHHHHHHHHHhhH
Confidence 577777888888888777653
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.29 E-value=0.0039 Score=48.57 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
..+..+|.++...|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++.+...
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF-------DPT-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 36788999999999999999999999975 222 2446788999999999999999999999988765
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 357 LTLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 357 l~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
. .+......+...+..+++....
T Consensus 86 ~----~~~~~~~~l~~~l~~l~~~~~~ 108 (115)
T 2kat_A 86 R----GDQQVVKELQVFLRRLAREDAL 108 (115)
T ss_dssp H----TCHHHHHHHHHHHHHHHHHHHH
T ss_pred c----ccHHHHHHHHHHHHHhccccCc
Confidence 4 2334456666666667665544
No 196
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.29 E-value=0.0028 Score=52.64 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=91.4
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+.... ...+. ....+..++.++...|++..|..+++.+... .+...
T Consensus 49 ~~~~~~~~~~~~A~~~~~~~~-------~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~ 110 (186)
T 3as5_A 49 GIAYVKTGAVDRGTELLERSL-------ADAPD-------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA----NPINF 110 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-------HHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------hcCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CcHhH
Confidence 335567888888887765321 11222 2234556677777889999999888876543 22222
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
.....++.++...|++++|+..|+++++.. +. ....+..+|.++..+|++++|+..|++
T Consensus 111 -------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 111 -------NVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PN-------EGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------cc-------chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356788999999999999999999998652 22 145677899999999999999999999
Q ss_pred HHHHHH
Q 016258 350 AIKRLE 355 (392)
Q Consensus 350 al~i~e 355 (392)
++.+..
T Consensus 170 ~~~~~~ 175 (186)
T 3as5_A 170 ANELDE 175 (186)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 987653
No 197
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.28 E-value=0.0014 Score=51.62 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=64.7
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
.+|++.+|+.+++++.. +... ..........+|.++...|++++|+..|++++++ .+.+
T Consensus 2 ~~g~~~~A~~~~~~al~----~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~------ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA----SGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------FPNH------ 60 (117)
T ss_dssp -----CCCHHHHHHHHS----SCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC------
T ss_pred CCCcHHHHHHHHHHHHH----cCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc------
Confidence 35667777777776643 1111 1233467889999999999999999999999866 2332
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
...+.++|.++..+|++++|+..|++++.+
T Consensus 61 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 61 -QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999998764
No 198
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.25 E-value=0.0029 Score=56.69 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=90.5
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++...+..|++..|+.+++.+... .+.... .+..++.++...|++++|+..|+++++. ..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~ 68 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-------IYNRRAVCYYELAKYDLAQKDIETYFSK-----VN 68 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCST-------THHHHHHHHHHTTCHHHHHHHHHHHHTT-----SC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cC
Confidence 3455677777889999999998877532 333332 5677888999999999999999998852 11
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.+. -.+..+..+|.++..+|++++|+..|++++.+ +|.......+++.++..+|+.
T Consensus 69 ~~~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 69 ATK------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp TTT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCH
T ss_pred chh------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHccCH
Confidence 111 13556788999999999999999999988873 567777888888888777653
No 199
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.24 E-value=0.0026 Score=49.56 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=86.2
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+.... ...+.+ ...+..++.++...|++..++.+++..... .+...
T Consensus 10 ~~~~~~~~~~A~~~~~~~~-------~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~-- 69 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKAL-------ELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSA-- 69 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHH-------HHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred HHHHcCcHHHHHHHHHHHH-------HcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCCch--
Confidence 4456788888887775321 111222 234455677776788899999888776443 22222
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.....++.++...|++++|+..|++++++. +. ....+..++.++...|++++|+..|++++
T Consensus 70 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 70 -----EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp -----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 346678999999999999999999988642 21 13356678999999999999999999887
Q ss_pred HH
Q 016258 352 KR 353 (392)
Q Consensus 352 ~i 353 (392)
.+
T Consensus 131 ~~ 132 (136)
T 2fo7_A 131 EL 132 (136)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 200
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.22 E-value=0.0021 Score=50.20 Aligned_cols=90 Identities=13% Similarity=0.030 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+..+|.++...|++++|+..|+++++.. +. ....+.++|.++..+|++++|+..|++++.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 4567889999999999999999999998752 22 145677899999999999999999999998776
Q ss_pred Hh-hcCCCchHHHHHHHHHHHHHHH
Q 016258 356 SL-TLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 356 ~l-~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.. ...+.......+++.++..+++
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~ 94 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEK 94 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcc
Confidence 43 1111125556677777766654
No 201
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.19 E-value=0.0041 Score=57.47 Aligned_cols=125 Identities=8% Similarity=-0.018 Sum_probs=88.6
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-------
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN------- 304 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~------- 304 (392)
..+..++......|++..|+.+++++... .+... .....++.++...|++++|+..|++++.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQNG-------EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTSCH-------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCcch-------hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 34455667766889999999888776443 33333 3567888899999999999999888643
Q ss_pred --------------------HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc-
Q 016258 305 --------------------VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE- 363 (392)
Q Consensus 305 --------------------i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~- 363 (392)
..+++....++ -...+.++|.++...|++++|+..|++++.+ +|+.
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~ 253 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPE-------DAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAA 253 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGG
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccc
Confidence 11222233333 2445678999999999999999888877764 4555
Q ss_pred -hHHHHHHHHHHHHHHHH
Q 016258 364 -AGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 364 -a~~l~~~~~~~~~l~~~ 380 (392)
.....+++.++..+|+.
T Consensus 254 ~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTG 271 (287)
T ss_dssp GGHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHcCCC
Confidence 66788888888887753
No 202
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.18 E-value=0.0041 Score=49.53 Aligned_cols=82 Identities=9% Similarity=-0.020 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
.-.+|..+...|++++|+..|++++++ .+. -+..+..+|.++..+|++++|+..|++++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----- 80 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-------EPE-------REEAWRSLGLTQAENEKDGLAIIALNHARML----- 80 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 456788888899999999999998864 333 2456778999999999999999998888764
Q ss_pred cCCCchHHHHHHHHHHHHHHHH
Q 016258 359 LKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 359 ~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++.....+++.++..+|+.
T Consensus 81 -~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 81 -DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCH
Confidence 688888888999999888774
No 203
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.16 E-value=0.0079 Score=47.24 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=74.2
Q ss_pred HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
+...+......|++..|+.+++..... .+... ........+|.++...|++++|+..|++.++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~------- 69 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL----YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSRY------- 69 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------
Confidence 344566666889999999888776433 22222 112467789999999999999999999988642
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+.+. .....+.++|.++..+|++++|+..|++++..
T Consensus 70 p~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 70 PTHD----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2221 23556788999999999999999998887764
No 204
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.16 E-value=0.0053 Score=49.94 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...+..+|..+...|++++|+..|++++.+ .+.+ ...+..+|.++..+|++++|+..|++++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML-------DHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 346678899999999999999999988854 3322 445678999999999999999999988764
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|++.....+++.++..+|+.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCH
Confidence 577778888888888877763
No 205
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.15 E-value=0.00085 Score=70.28 Aligned_cols=160 Identities=12% Similarity=-0.015 Sum_probs=94.3
Q ss_pred HHHHhhcHHHHHHHhhhcHH-HHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258 192 RAFRAQNVESAKSRLSLCTE-DIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE 270 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~-h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e 270 (392)
.++..|++++|...+....+ .+.......+. +...+..++.....+|++.+|+..++++... .+...
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~- 467 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRW- 467 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCH-
T ss_pred hcccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchH-
Confidence 45677777777776652210 00000011122 2234455667776788888888888776543 22222
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-------------HHhhcCCCCCcchhh--------HHHHHHH
Q 016258 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR-------------DAVKRHSNVPSQVLD--------VAVSLAK 329 (392)
Q Consensus 271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~-------------~~~~~~~~~~~~~~d--------la~sl~~ 329 (392)
..+..+|.++...|++++|+..|++++++.- ...++..+ . ..++ .+..+.+
T Consensus 468 ------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~-~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 468 ------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H-KFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T-CHHHHHHHHCTTCHHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H-HHHHHHHHhCCchHHHHHH
Confidence 3677888899999999999999999887431 11122222 2 1222 1234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l 377 (392)
+|.++..+|++++|+..|++++ ..+|+.+....+++.++...
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al------~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVP------PTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC------TTSTTHHHHHHHHHHHTC--
T ss_pred HHHHHHHcCCHHHHHHHHHhhc------ccCcccHHHHHHHHHHHHcc
Confidence 8888888888877777666554 44677776666777665433
No 206
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.15 E-value=0.0027 Score=56.81 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=78.4
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
.....+..++.++...|++..|+.+++.+... .+... .....+|.++...|++++|+..|++++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 106 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 106 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Confidence 44567777888888899999999998877554 33332 35778899999999999999999999875
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+.. ...+..+|.++..+|++++|+..|++++.+
T Consensus 107 ----~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 107 ----DPTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ----CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----Cccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2221 346778999999999999999999888764
No 207
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.14 E-value=0.0069 Score=52.11 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc-hh----h-HHHHHHHHHHHHHhcCCHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ-VL----D-VAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~-~~----d-la~sl~~la~~~~~~g~~~~A~~ 345 (392)
.......+..+|..+...|++++|+..|.+++++... .+..... .. . .+..+.++|.++..+|++++|+.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH----TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4445567889999999999999999999999975322 1110000 00 0 13567889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 346 GFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 346 ~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.|++++.+ +|.+.....+++.++..+++.
T Consensus 110 ~~~~al~~------~p~~~~~~~~lg~~~~~~~~~ 138 (198)
T 2fbn_A 110 HASKVLKI------DKNNVKALYKLGVANMYFGFL 138 (198)
T ss_dssp HHHHHHHH------STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHh------CcccHHHHHHHHHHHHHcccH
Confidence 99999876 677788888888888877653
No 208
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.14 E-value=0.0037 Score=55.90 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=83.1
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++..|+.++++.... .... .......+..+|.++...|++++|+..|++++++ .+.
T Consensus 17 ~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~------- 75 (275)
T 1xnf_A 17 PTLQQEVILARMEQILAS----RALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-------RPD------- 75 (275)
T ss_dssp CCHHHHHHHHHHHHHHTS----SCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC-------
T ss_pred ccchHHHHHHHHHHHHhc----cccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------CCC-------
Confidence 446667788777665332 1111 2234567889999999999999999999999976 222
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
....+..+|.++..+|++++|+..|++++.+ +|.......+++.++..+|+.
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CccccHHHHHHHHHHHHhccH
Confidence 2456788999999999999999999998875 567777788888887776653
No 209
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.13 E-value=0.0052 Score=55.51 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=45.2
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhh----hcchhHHHhHHHHHHHHHHhCCCC
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA----MGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~----~gdhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+..|++++|...|....+ + .+...+..++.++.. .+++..|+.+++.+.+. .
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~---------~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~-- 72 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACD---------L-------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N-- 72 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---------T-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred HHHhCCCHHHHHHHHHHHHH---------C-------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--
Confidence 55677888888887753321 1 111233445555544 56666666666655322 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHH
Q 016258 268 DLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLN 304 (392)
Q Consensus 268 ~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~ 304 (392)
. ..+...+|.++.. .+++++|+.+|+++++
T Consensus 73 ~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 Y-------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 1 1244555555555 5666666666665554
No 210
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.13 E-value=0.0013 Score=52.56 Aligned_cols=93 Identities=10% Similarity=-0.034 Sum_probs=71.7
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
..+......|++..|+..++.+... .+... ..+..+|.++...|++++|+..|++++++ .+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~ 83 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK----EPERE-------EAWRSLGLTQAENEKDGLAIIALNHARML-------DPK 83 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC
Confidence 4566666889999999888876543 33333 35778999999999999999999998875 232
Q ss_pred CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+ ...+..+|.++..+|++++|+..|++++.+
T Consensus 84 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 D-------IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 346678999999999999999999888754
No 211
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.13 E-value=0.011 Score=53.16 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=101.4
Q ss_pred HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhh--------hcchhHHHhHHHHHHHH
Q 016258 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA--------MGDADAAVAYFADSVEF 260 (392)
Q Consensus 189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~--------~gdhh~a~~~~e~~~~~ 260 (392)
.+...+..|++++|...+... +...+.+. .....+..++.+... .|++..|+..++.....
T Consensus 58 lg~~~~~~~~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 58 LARAYYQNKEYLLAASEYERF-------IQIYQIDP----RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------HHHCTTCT----THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHH-------HHHCCCCc----hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 344667889999998877522 22222221 112345566776656 78888898888776433
Q ss_pred HHhCCCCChh----------HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 016258 261 LMKLPMDDLE----------IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKV 330 (392)
Q Consensus 261 ~~~L~~~~~e----------~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~l 330 (392)
. +.... +...+....-.+|.++...|++++|+..|++.++.. +... .....+.++
T Consensus 127 ~----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l 191 (261)
T 3qky_A 127 Y----PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-------PDTP----WADDALVGA 191 (261)
T ss_dssp C----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTST----THHHHHHHH
T ss_pred C----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCCc----hHHHHHHHH
Confidence 2 22221 223334445788999999999999999999988642 2211 234566778
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHHHHHhhc
Q 016258 331 ADVDRSI----------GNEDVAVDGFQEAIKRLESLTLKPEE---AGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 331 a~~~~~~----------g~~~~A~~~~~eal~i~e~l~~~p~~---a~~l~~~~~~~~~l~~~~~~ 383 (392)
|.++..+ |++++|+..|++++ ..+|+. ......++.++..+++.-.+
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~------~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLL------QIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH------HHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHH------HHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 8888776 56666666655544 334544 44566777777777776443
No 212
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.12 E-value=0.0047 Score=50.60 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.....+..+|.++...|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-------PS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678899999999999999999999998751 22 1456788999999999999999999988875
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 354 LESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 354 ~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|.......+++.++..+|+.
T Consensus 77 ------~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 77 ------DKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCH
T ss_pred ------CcccHHHHHHHHHHHHHhccH
Confidence 566677777788877766653
No 213
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.002 Score=63.38 Aligned_cols=122 Identities=11% Similarity=-0.023 Sum_probs=79.3
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.++...|++..|+.+++..... .+... ..+..+|.++...|++++|+..|++++++.......
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRK----FPEAP-------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHH----STTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----cccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 4455666776778888888887776533 22222 356788999999999999999999998764321100
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRS---IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~---~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
...+..+..+|.++.. +|++++|+..|++++.+ +|........++.++..+|+
T Consensus 409 --------~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 409 --------YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------DPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp --------SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred --------HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcC
Confidence 0112355667777777 77777777777776653 35555555566666655543
No 214
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.11 E-value=0.0072 Score=46.88 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
......+..+|.++...|++++|+..|++++++ .+. ....+..+|.++..+|++++|+..|++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-------NPA-------NAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CCC-------CHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 344567788999999999999999999999875 222 145677899999999999999999998886
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 353 RLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 353 i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+ .|.+.....+++.++..+++
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 75 I------DPAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp H------CTTCHHHHHHHHHHHHHTTC
T ss_pred c------CccCHHHHHHHHHHHHHhCC
Confidence 4 56777777888888776664
No 215
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.012 Score=57.74 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=57.2
Q ss_pred HHHHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYY---GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~~~~lg~l~~~---~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
..-.++..... .|++++|+..|+++++..+......+.........+..+..+|.++...|++++|+..|++++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 33444555554 78999999999999997766665555543333466778889999999999999999999888753
No 216
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.04 E-value=0.0046 Score=55.90 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=65.2
Q ss_pred HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHH
Q 016258 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~ 306 (392)
...+..++..+...|++..|+.+++.+.+ .... .+...+|.++.. .+++++|+.+|+++++.-
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~-------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD------LKEN-------SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCH-------HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 34566788888788999999999987755 1122 367889999999 999999999999998641
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK 352 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~ 352 (392)
....+.++|.++.. .+++++|+.+|++++.
T Consensus 73 ----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 ----------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp ----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 12344455555555 5566666555555544
No 217
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.03 E-value=0.0044 Score=47.29 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
..+..+|.++...|++++|+..|++++.. .+. ....+..+|.++..+|++++|+..|++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 67 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL-------DPH-------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--- 67 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---
Confidence 46778899999999999999999999864 222 1446778999999999999999999888765
Q ss_pred hhcCCCchHHHHHHHHHHHHHHH
Q 016258 357 LTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 357 l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
+|.......+++.++..+|+
T Consensus 68 ---~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 68 ---KPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTC
T ss_pred ---CcccHHHHHHHHHHHHHHhh
Confidence 57777778888888877665
No 218
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.03 E-value=0.0027 Score=49.84 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
..++..+|.++...|++++|+..|++++++ .+. ....+..+|.++..+|++++|+..|++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR-------NPK-------DAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-------CTT-------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 457888999999999999999999998854 222 1456788999999999999999999988874
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHH
Q 016258 356 SLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 356 ~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.|.+.....+++.++..+++
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTC
T ss_pred ----CCCchHHHHHHHHHHHHHhh
Confidence 56777778888888877664
No 219
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.0035 Score=50.30 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
..+..++..+...|++++|+..|++++++ .+. .......+.++|.++..+|++++|+..|++++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 94 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL-------DAT----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--- 94 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------ccc----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 46778899999999999999999998853 121 1124567889999999999999999999988865
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHH
Q 016258 357 LTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 357 l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|.+.....+++.++..+++.
T Consensus 95 ---~~~~~~~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 95 ---DGGDVKALYRRSQALEKLGRL 115 (148)
T ss_dssp ---TSCCHHHHHHHHHHHHHHTCH
T ss_pred ---CccCHHHHHHHHHHHHHcCCH
Confidence 577777888888888777653
No 220
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.00 E-value=0.0025 Score=63.30 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.......+.++|.++...|++++|+..|++++++.........+. .......+..+.++|.++..+|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445667889999999999999999999999998643211000000 0011123567889999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+.+ +|.++..+.+++.+|..+++.
T Consensus 344 l~~------~p~~~~a~~~~g~a~~~~g~~ 367 (457)
T 1kt0_A 344 LGL------DSANEKGLYRRGEAQLLMNEF 367 (457)
T ss_dssp HHH------STTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc------CCccHHHHHHHHHHHHHccCH
Confidence 875 577788888899888877653
No 221
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.99 E-value=0.0015 Score=49.60 Aligned_cols=97 Identities=19% Similarity=0.077 Sum_probs=72.8
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.+....|++..|+.+++.+... .+... .....+|.++...|++++|+..|++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 69 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEES-------KYWLMKGKALYNLERYEEAVDCYNYVINV------- 69 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 4456677777889999999998877543 23222 35678899999999999999999998865
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIK 352 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~ 352 (392)
.+. ......+.++|.++..+ |++++|+..|++++.
T Consensus 70 ~~~-----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 70 IED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp SCC-----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred Ccc-----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 121 00244678899999999 999999988877754
No 222
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.98 E-value=0.0025 Score=64.74 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=94.9
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...+... +...+ .+...+..++.++..+|++.+|+.+++++... .+..
T Consensus 30 g~~~~~~g~~~~A~~~~~~a-------l~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~- 90 (568)
T 2vsy_A 30 ADAELGMGDTTAGEMAVQRG-------LALHP-------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDA----APEH- 90 (568)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-------HTTST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHH-------HHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC-
Confidence 44566788898888877522 22222 22345667888888899999999999887654 2323
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc---CCHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI---GNEDVAVDG 346 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~---g~~~~A~~~ 346 (392)
...+.++|.++...|++++|+..|++++++ .+. ....+.+++.++..+ |++++|+..
T Consensus 91 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 91 ------PGIALWLGHALEDAGQAEAAAAAYTRAHQL-------LPE-------EPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 236788999999999999999999999876 222 144677899999999 999999999
Q ss_pred HHHHHHHHH
Q 016258 347 FQEAIKRLE 355 (392)
Q Consensus 347 ~~eal~i~e 355 (392)
|++++.+-.
T Consensus 151 ~~~al~~~p 159 (568)
T 2vsy_A 151 VRAAVAQGV 159 (568)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhcCC
Confidence 999987643
No 223
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.97 E-value=0.0013 Score=68.94 Aligned_cols=162 Identities=16% Similarity=0.058 Sum_probs=85.5
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHH---------
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLM--------- 262 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~--------- 262 (392)
..+..|++++|...+..+. .. -|.+...+..+|.++..+|++.+|+..|+++.....
T Consensus 442 ~~~~~g~~~~A~~~~~~al-------~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 442 ALLDLGDVAKATRKLDDLA-------ER-------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHH-------HH-------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHh-------cc-------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3446677777766654221 11 122233455566666667777777776666532210
Q ss_pred --------hCCCCChhHHHHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHH
Q 016258 263 --------KLPMDDLEIIHTL------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLA 328 (392)
Q Consensus 263 --------~L~~~~~e~~~~l------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~ 328 (392)
+... ...+.+.+ .....++|.++...|++++|+..|++++++ .+ +.+..+.
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P-------~~~~a~~ 572 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT-------SR-------HFTTARL 572 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT-------ST-------THHHHHH
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc-------Cc-------ccHHHHH
Confidence 1111 11122222 134566677777777777777666665532 22 3355677
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258 329 KVADVDRSIGNEDVA-VDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEK 384 (392)
Q Consensus 329 ~la~~~~~~g~~~~A-~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~ 384 (392)
+++.++...+...++ ...|++++..++ ...+.......-...++...-..+...
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~A~~~l~--~~~~~~~~~~~l~~~ll~~~l~~~~~~ 627 (681)
T 2pzi_A 573 TSAVTLLSGRSTSEVTEEQIRDAARRVE--ALPPTEPRVLQIRALVLGGALDWLKDN 627 (681)
T ss_dssp HHHHHTC-------CCHHHHHHHHHHHH--TSCTTSTTHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHHHHHHHHcc
Confidence 788888776665555 566677765544 566666666666667776655555443
No 224
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.96 E-value=0.0025 Score=58.78 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+..+|.++...|++++|+..|++++++ .+. .+..+.++|.++..+|++++|+..|++++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~----- 66 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALE----- 66 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----
Confidence 4555666666666666666666666653 111 123444555555555555555555544443
Q ss_pred hcCCCchHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.+|++.....+++.++..+|
T Consensus 67 -~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 67 -LDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp -SCTTCHHHHHHHHHHHHHTT
T ss_pred -hCCCCHHHHHHHHHHHHHcC
Confidence 24444444555555544444
No 225
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.93 E-value=0.00079 Score=49.48 Aligned_cols=44 Identities=25% Similarity=0.685 Sum_probs=37.5
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCcc
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
..-.|.||..++........|+|.|=..||.+|+ .||+|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4578999999998667777999999999999994 4999998654
No 226
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.89 E-value=0.01 Score=45.53 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~ 356 (392)
..+..++.++...|++++|+..|++++... +. ....+..++.++...|++++|+..|++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 72 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--- 72 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---
Confidence 467788999999999999999999998651 21 1346778999999999999999999888764
Q ss_pred hhcCCCchHHHHHHHHHHHHHHH
Q 016258 357 LTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 357 l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
.|.+......++.++..+++
T Consensus 73 ---~~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 73 ---DPNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTC
T ss_pred ---CCccHHHHHHHHHHHHHhcC
Confidence 46666667777777766554
No 227
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.84 E-value=0.023 Score=47.88 Aligned_cols=138 Identities=10% Similarity=0.010 Sum_probs=74.4
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHH---------
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEF--------- 260 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~--------- 260 (392)
+...+..|++++|...+.... ..-|.+...+..++.+....|++.+|+.+++.....
T Consensus 13 a~~~~~~g~~~~A~~~~~~al--------------~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 78 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLS--------------DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL 78 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSC--------------HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH--------------HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence 346678899999988775321 123344445556666665666666665544332100
Q ss_pred ------HHhCCCC--ChhHHHHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHH
Q 016258 261 ------LMKLPMD--DLEIIHTL------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVS 326 (392)
Q Consensus 261 ------~~~L~~~--~~e~~~~l------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~s 326 (392)
....... ...++..+ ......+|.++...|++++|+..|++.+++ .+... -...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~-----~~~a 146 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV-------NLGAQ-----DGEV 146 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTTT-----TTHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-------CcccC-----hHHH
Confidence 0000000 00111111 234556677777777777777777766532 22110 1224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 327 LAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
+.+++.++..+|+.++|+..|++++..
T Consensus 147 ~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 147 KKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 556777777777777777777777654
No 228
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.82 E-value=0.0025 Score=48.26 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=62.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
...+|.++...|++++|+..|++++++. +. ....+..+|.++..+|++++|+..|++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 69 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-------PE-------ESKYWLMKGKALYNLERYEEAVDCYNYVINV----- 69 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 4567889999999999999999998752 22 1345778999999999999999999888754
Q ss_pred cCCC--chHHHHHHHHHHHHH
Q 016258 359 LKPE--EAGLEQRRLSVLEFL 377 (392)
Q Consensus 359 ~~p~--~a~~l~~~~~~~~~l 377 (392)
.|. ......+++.++..+
T Consensus 70 -~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 70 -IEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp -SCCTTCHHHHHHHHHHHTTC
T ss_pred -CcccchHHHHHHHHHHHHHH
Confidence 466 677777777777665
No 229
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.77 E-value=0.002 Score=50.72 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=56.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 016258 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~ 368 (392)
.|++++|+..|++++++. .. -.+....+.++|.++..+|++++|+..|++++.+ +|++.....
T Consensus 3 ~g~~~~A~~~~~~al~~~-------~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG-------LQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSC-------CC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC-------CC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHH
Confidence 578888999999888641 00 1245667889999999999999999999988865 688888888
Q ss_pred HHHHHHHHHHHH
Q 016258 369 RRLSVLEFLNNQ 380 (392)
Q Consensus 369 ~~~~~~~~l~~~ 380 (392)
+++.++..+|+.
T Consensus 66 ~l~~~~~~~g~~ 77 (117)
T 3k9i_A 66 FYAMVLYNLGRY 77 (117)
T ss_dssp HHHHHHHHHTCH
T ss_pred HHHHHHHHcCCH
Confidence 899988887764
No 230
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.74 E-value=0.0086 Score=44.99 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=59.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~-sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~ 359 (392)
+.|..+...|++++|+..|++++++ .+. -.. .+.++|.++..+|++++|+..|++++.+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-------~p~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-------EPV-------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------ 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-------CSS-------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 4577788889999999999998865 232 134 6778999999999999999999998864
Q ss_pred CCCchHHH--HHHHHHHHHHHHHh
Q 016258 360 KPEEAGLE--QRRLSVLEFLNNQL 381 (392)
Q Consensus 360 ~p~~a~~l--~~~~~~~~~l~~~~ 381 (392)
+|+..... ..+..++....+.+
T Consensus 65 ~p~~~~~~~~~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 65 NPDSPALQARKMVMDILNFYNKDM 88 (99)
T ss_dssp CTTSTHHHHHHHHHHHHHHHCCTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 45555544 55566655554433
No 231
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.70 E-value=0.015 Score=48.63 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=74.4
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH-HHhccCH--HHHHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGDL--QAARSYYVRSLNVRRD 308 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l-~~~~g~l--~~A~~~ye~sL~i~~~ 308 (392)
..+..++.++...|++..|+.+++.+.... +... .....+|.+ +...|++ ++|+..|++++++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~-------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENA-------ELYAALATVLYYQASQHMTAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSCH-------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCH-------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence 356677888878999999999998875543 2222 356778888 7788998 9999999998875
Q ss_pred HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
.+.+ ...+..+|.++..+|++++|+..|++++.+
T Consensus 111 ----~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 111 ----DSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2221 345678999999999999999998888754
No 232
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.66 E-value=0.009 Score=55.11 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=85.6
Q ss_pred HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHH-----------
Q 016258 191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVE----------- 259 (392)
Q Consensus 191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~----------- 259 (392)
..+++.|++++|...+.. .+...+.+ ...+..++.+....|++.+|+.+++....
T Consensus 125 ~~~~~~g~~~~A~~~~~~-------al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXD-------AWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHHHHTTCHHHHHHHHHH-------HHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHH-------HHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 366778888888877652 22333333 33445556666566666666555443210
Q ss_pred ----HHHhCCC--CChhHHHHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHH
Q 016258 260 ----FLMKLPM--DDLEIIHTL------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 260 ----~~~~L~~--~~~e~~~~l------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl 327 (392)
....-.. ....+++.+ .....+++.++...|++++|+..|++.++.. +.. +-....
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-------p~~-----~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-------LTA-----ADGQTR 258 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTG-----GGGHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------ccc-----ccchHH
Confidence 0000000 001111111 2456788999999999999999999988752 211 113456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 328 AKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 328 ~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
.+++.++..+|+.++|+..|++++..+
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 789999999999999999999998764
No 233
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.64 E-value=0.018 Score=45.08 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~ 358 (392)
+-.+|..+...|++++|+..|++.++. .+.+. .....+-++|.++..+|++++|+..|++++.+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~----- 68 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL-------YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSR----- 68 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----
Confidence 456788888999999999999988754 22221 22356778999999999999999999888763
Q ss_pred cCCCc---hHHHHHHHHHHHHHHHH
Q 016258 359 LKPEE---AGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 359 ~~p~~---a~~l~~~~~~~~~l~~~ 380 (392)
.|+. .....+++.++..+|+.
T Consensus 69 -~p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 69 -YPTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp -CTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred -CCCCcccHHHHHHHHHHHHHcCCH
Confidence 3444 66677788887776653
No 234
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0073 Score=57.36 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh--cCCCCCcchhh-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK--RHSNVPSQVLD-VAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~--~~~~~~~~~~d-la~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
.....+..+|..+...|++++|+..|++++++...... ........... ....+.++|.++..+|++++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556888999999999999999999999986432210 00000000000 1135778999999999999999999998
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+.+ +|.+...+.+++.+|..+++.
T Consensus 257 l~~------~p~~~~a~~~lg~a~~~~g~~ 280 (338)
T 2if4_A 257 LTE------EEKNPKALFRRGKAKAELGQM 280 (338)
T ss_dssp HHH------CTTCHHHHHHHHHHHHTTTCH
T ss_pred HHh------CCCCHHHHHHHHHHHHHcCCH
Confidence 864 678888888899888877653
No 235
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.45 E-value=0.072 Score=46.69 Aligned_cols=162 Identities=13% Similarity=-0.034 Sum_probs=95.5
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...|... +...+.+. .....+.+++.+.+..|++..|+..++..... .+...
T Consensus 11 a~~~~~~g~~~~A~~~~~~~-------~~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~~ 75 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEAL-------DNRYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTHP 75 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHH-------HHHCTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHH-------HHhCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCC
Confidence 44678899999999888622 12222111 11235667888888899999999888776533 33333
Q ss_pred hHHHHHHHHHHHHHHHHH------------------hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh----------
Q 016258 270 EIIHTLSVSLNKIGDLKY------------------YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL---------- 321 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~------------------~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~---------- 321 (392)
.+ ..++-.+|.++. ..|++++|+..|++.++ ..+.......
T Consensus 76 ~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 76 NI----DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR-------GYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp TH----HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT-------TCTTCTTHHHHHHHHHHHHH
T ss_pred cH----HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH-------HCcCChhHHHHHHHHHHHHH
Confidence 21 123334444443 34566677766666554 4444332110
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
.++...-.+|.++..+|++++|+..|++++++.- ..|.....+.+++.++..+|+.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCc
Confidence 1111223578889999999999998888775421 1122234567778887777654
No 236
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.45 E-value=0.02 Score=48.27 Aligned_cols=127 Identities=10% Similarity=0.044 Sum_probs=79.4
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH---------H
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------R 307 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~---------~ 307 (392)
.+......|++..|+.+++...... ..-......+|.++...|++++|+..|++++... -
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-----------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 80 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-----------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-----------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence 4455557788888887776553321 1123467788889999999999998887754321 0
Q ss_pred --HHhhcCCCC-Ccchh--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 016258 308 --DAVKRHSNV-PSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE--EAGLEQRRLSVL 374 (392)
Q Consensus 308 --~~~~~~~~~-~~~~~--------dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~--~a~~l~~~~~~~ 374 (392)
......... ....+ +-...+.++|.++..+|++++|+..|++++. .+|+ +.....+++.++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHH
Confidence 000100000 00001 1234566799999999999999998887754 3444 345677888888
Q ss_pred HHHHHH
Q 016258 375 EFLNNQ 380 (392)
Q Consensus 375 ~~l~~~ 380 (392)
..+|+.
T Consensus 155 ~~~g~~ 160 (176)
T 2r5s_A 155 SALGQG 160 (176)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 877653
No 237
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.32 E-value=0.0021 Score=64.35 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+.++|.++...|++++|+..|++++++ .+. .+..+.++|.++..+|++++|+..|++++++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 69 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL---- 69 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence 3455677778889999999999999976 222 2667889999999999999999999998865
Q ss_pred hcCCCchHHHHHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
+|..+....+++.+|..+|+.
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCH
T ss_pred --CCCCHHHHHHHHHHHHHcCCH
Confidence 788888889999998887754
No 238
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.32 E-value=0.023 Score=47.51 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=74.5
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++..|+.+++.+... .+... ..+..+|.++...|++++|+..|++++++. +.+
T Consensus 22 ~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~------ 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA----NPQNS-------EQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GEN------ 77 (177)
T ss_dssp -----CCCCHHHHHHHHH----CCSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSC------
T ss_pred hccCHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------
Confidence 345566666666655332 23232 367789999999999999999999999763 221
Q ss_pred HHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258 323 VAVSLAKVADV-DRSIGNE--DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379 (392)
Q Consensus 323 la~sl~~la~~-~~~~g~~--~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~ 379 (392)
...+..+|.+ +...|++ ++|+..|++++.+ +|.+.....+++.++..+|+
T Consensus 78 -~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 130 (177)
T 2e2e_A 78 -AELYAALATVLYYQASQHMTAQTRAMIDKALAL------DSNEITALMLLASDAFMQAN 130 (177)
T ss_dssp -HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHccc
Confidence 3456778888 8888998 9999988888764 67777778888888776654
No 239
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.25 E-value=0.035 Score=51.33 Aligned_cols=114 Identities=14% Similarity=0.011 Sum_probs=76.8
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
.+..++.+....|++.+|+..++. +... .....++.++..+|++++|+..|++++++.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~---------~~~~-------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------ 160 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ---------GDSL-------ECMAMTVQILLKLDRLDLARKELKKMQDQD------ 160 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT---------CCSH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC---------CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------
Confidence 455666776677888888877654 2232 256678889999999999999999988652
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
++.. ...++..+ ..++...|++++|+..|++++.. +|+++.++.+++.++..+|+.
T Consensus 161 -p~~~--~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 161 -EDAT--LTQLATAW---VSLAAGGEKLQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp -TTCH--HHHHHHHH---HHHHHCTTHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCH
T ss_pred -cCcH--HHHHHHHH---HHHHhCchHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCH
Confidence 2211 11111111 12333457888888887777653 788889999999988877754
No 240
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.14 E-value=0.045 Score=47.82 Aligned_cols=136 Identities=10% Similarity=-0.023 Sum_probs=89.1
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhc----chhHHHhHHHHHHHHHHhCCCC
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMG----DADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~g----dhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+..+++++|...|....+ . .+...+..++.++.. + ++.+++.+++.+.+. .
T Consensus 27 ~~~~~~~~~~A~~~~~~a~~---------~-------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------g 83 (212)
T 3rjv_A 27 TWVSSGDYQKAEYWAQKAAA---------Q-------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------G 83 (212)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---------T-------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------T
T ss_pred HHhcCCCHHHHHHHHHHHHH---------c-------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------C
Confidence 34456777777777753311 0 122344556666644 5 678888888877321 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCC
Q 016258 268 DLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGN 339 (392)
Q Consensus 268 ~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~ 339 (392)
. ..+..+||.++.. .+++++|+.+|+++++. .+. .+.+.++.+||.++.. .++
T Consensus 84 ~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~-----~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 84 S-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SES-----DAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp C-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTS-----HHHHHHHHHHHHHHHHTSSSSCC
T ss_pred C-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCC-----cchHHHHHHHHHHHHcCCCCCCC
Confidence 1 2467889999877 78999999999988753 110 0246678899999998 889
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258 340 EDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 340 ~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~ 376 (392)
+++|+.+|+++.++ +.+.....+++.+|..
T Consensus 145 ~~~A~~~~~~A~~~-------~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-------SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHHHHT-------SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHc
Confidence 99999999999754 2223345556665543
No 241
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.08 E-value=0.045 Score=48.04 Aligned_cols=64 Identities=9% Similarity=-0.061 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
...-.+|.++...|++.+|+..|++.++.. +... .....+..+|.++..+|++++|+..|+..+
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 344567888899999999999999888652 2211 234567889999999999999998776443
No 242
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.98 E-value=0.22 Score=41.92 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=55.7
Q ss_pred hCCCCChhHHHHHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-
Q 016258 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ---AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG- 338 (392)
Q Consensus 263 ~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~---~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g- 338 (392)
++.+...+ .+.++|.++...++++ +|+..|++++...+++++-.+.. +..+.++|.+|..+|
T Consensus 30 ~l~P~~ae-------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-------~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 30 KSNPLDAD-------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-------DEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHCTTCHH-------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHH
T ss_pred HHCCCCHH-------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHhcc
Confidence 44555554 5666777776665443 45556666666666666656653 456777888887765
Q ss_pred ---CHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 016258 339 ---NEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLS 372 (392)
Q Consensus 339 ---~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~ 372 (392)
++..|...|++|+..+++. +.+|++..+.+.+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2334444444444444443 457777776665543
No 243
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.012 Score=44.76 Aligned_cols=97 Identities=11% Similarity=0.022 Sum_probs=68.6
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++..++..|++..|+..++.+... .+... ....++|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNP-------VGYSNKAMALIKLGEYTQAIQMCQQGLRY------ 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34556778887899999999999887654 33332 35789999999999999999999998854
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~ 347 (392)
.+.+... ......+..++.++..+|+++.|+..|
T Consensus 68 -~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 68 -TSTAEHV-AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp -CSSTTSH-HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred -CCCccHH-HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 2322111 113556677888888888776665443
No 244
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.62 E-value=0.061 Score=45.43 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 016258 297 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLS 372 (392)
Q Consensus 297 ~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~---~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~ 372 (392)
..|+++++..+.+.+..+.+ +..+.++|.++..++++ ..|+..+++|+..+++. ..+|+.+....+++.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34555555555555666654 45667777777776655 46777888888888887 889999999999999
Q ss_pred HHHHHHH
Q 016258 373 VLEFLNN 379 (392)
Q Consensus 373 ~~~~l~~ 379 (392)
+|..+|.
T Consensus 89 ay~~lg~ 95 (158)
T 1zu2_A 89 AYTSFAF 95 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998874
No 245
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.56 E-value=0.06 Score=49.94 Aligned_cols=128 Identities=15% Similarity=-0.073 Sum_probs=87.4
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+...+..|++++|...|..... .-|.+- .....+.+++..+++..++.+++.. +.-..+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~--------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a------~~~~d~ 167 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV--------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA------GKWPDK 167 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC--------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG------GGCSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh------hccCCc
Confidence 3356678999999998853211 112222 4455667888889999998888532 111111
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC-CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH-SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~-~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
. .-....-.+|.+...+|++++|+..|++++. ... +. .....+-++|.++..+|+.++|...|+
T Consensus 168 ~---~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~------~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 168 F---LAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA------CARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT------THHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1234678899999999999999999998762 111 21 134466789999999999999999888
Q ss_pred HHHHH
Q 016258 349 EAIKR 353 (392)
Q Consensus 349 eal~i 353 (392)
+++.+
T Consensus 233 ~a~a~ 237 (282)
T 4f3v_A 233 WLQTT 237 (282)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87753
No 246
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.47 E-value=0.0048 Score=47.97 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCeeccccccc-cccCcee--ccCCCcchHHhHHh
Q 016258 88 GPLSCMICQAL-LFECSKC--TPCSHVYCKACISR 119 (392)
Q Consensus 88 ~~~~C~iC~~~-~~~~p~~--~~C~h~fC~~Ci~~ 119 (392)
+++.|+||.+. +. +++. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCC-CceEECCcCChHHhHHHCHH
Confidence 46899999964 45 6666 99999999999997
No 247
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.17 E-value=0.0051 Score=58.09 Aligned_cols=45 Identities=24% Similarity=0.649 Sum_probs=35.1
Q ss_pred CCeeccccccccccCcee-------ccCCCcchHHhHHhcC---------------CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKC-------TPCSHVYCKACISRFK---------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-------~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~ 132 (392)
+...|+||..++.+...+ ..|+|.|-..||.+|. .||.|+.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 457899999997742222 3799999999999983 39999997654
No 248
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.96 E-value=0.066 Score=46.70 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=70.5
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG----DLQAARSYYVRSLNVRR 307 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g----~l~~A~~~ye~sL~i~~ 307 (392)
..+..++.++...+++..|+.+++.+.+. . + ..+..+||.++.. + ++++|+.+|+++++.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g--~-------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-- 82 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----G--D-------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-- 82 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C--C-------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--
Confidence 45566777777788999999999887432 1 2 2467889999887 6 899999999998642
Q ss_pred HHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016258 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK 352 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~ 352 (392)
..+.++.+||.++.. .+++++|+.+|+++.+
T Consensus 83 --------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 83 --------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp --------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred --------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 225577889999987 8999999999988875
No 249
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.87 E-value=0.02 Score=40.11 Aligned_cols=43 Identities=23% Similarity=0.599 Sum_probs=33.9
Q ss_pred CCeeccccccccccCceeccCCC-----cchHHhHHhc------CCCCCCCCCcc
Q 016258 88 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRF------KDCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~------~~CP~C~~~~~ 131 (392)
+...|.||+.... ++.++||.+ .|=..|+.+| ..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4578999998854 677899653 6778899999 35999998764
No 250
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.86 E-value=0.065 Score=40.60 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~ 308 (392)
..+..++.++...|++..|+.+++.+... .+... .....+|.++...|++++|+..|++++++...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET----DPDYV-------GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 45667788888899999999999887644 23332 26788999999999999999999999987544
No 251
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.71 E-value=0.23 Score=35.66 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=58.8
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~ 311 (392)
..+..++..+...|++..|+.+++.+... .+... .....+|.++...|++++|+..|++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 45566777877889999999999887543 22222 35778999999999999999999999875
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcC
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIG 338 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g 338 (392)
.+.+ ...+.+++.++..+|
T Consensus 73 -~p~~-------~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -DPNN-------AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -CTTC-------HHHHHHHHHHHHHHC
T ss_pred -CCCC-------HHHHHHHHHHHHhcC
Confidence 2222 334556676665543
No 252
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.49 E-value=1.2 Score=40.66 Aligned_cols=110 Identities=6% Similarity=0.074 Sum_probs=58.8
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH------
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR------ 306 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~------ 306 (392)
.+..++......|++..|..+|+.+.. +.+...+ ....+++.+....|++++|+..|+++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccCcc------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 334455555456666777766665532 2332221 134555556656666666666666655420
Q ss_pred ---HHHhh----cCCCCCcchh--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 307 ---RDAVK----RHSNVPSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 307 ---~~~~~----~~~~~~~~~~--------dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
..... ...+.....+ +....+.+++.++..+|+++.|...|++++.
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00000 0000000001 1133456788889999999999999998876
No 253
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.36 E-value=0.14 Score=39.36 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~ 380 (392)
...+.++|.++..+|++++|+..|++++.+ +|.......+++.++..+|+.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCH
Confidence 456778999999999999999999998864 577777788888888777654
No 254
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.04 E-value=0.54 Score=46.20 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=14.5
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 016258 326 SLAKVADVDRS----IGNEDVAVDGFQEAI 351 (392)
Q Consensus 326 sl~~la~~~~~----~g~~~~A~~~~~eal 351 (392)
...+||.++.. .+++++|+.+|+++.
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 44455555555 555555555555554
No 255
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.72 E-value=0.46 Score=53.29 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=65.7
Q ss_pred hhhhhhhcchhHHHhHHHHHHHHH---HhCCCCChhHHHHH--------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 238 GDCCRAMGDADAAVAYFADSVEFL---MKLPMDDLEIIHTL--------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 238 c~~C~~~gdhh~a~~~~e~~~~~~---~~L~~~~~e~~~~l--------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
+.+|..+|.+.+|..+|+...... ..+-.....+.+.+ ...+.++|..+...|++++|+..|.++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 457777788888888887762111 11111111122222 345678888999999999999999664
Q ss_pred HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~ 354 (392)
+ -...+..++..+..+|++++|+.+|+.|.+..
T Consensus 1132 --------d-------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1132 --------D-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred --------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 1 13456668899999999999999998877544
No 256
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.22 E-value=0.37 Score=38.89 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhhc
Q 016258 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~~~~~~~ 312 (392)
++.++...+....++.+++.+.+. + + ..+..+||.++.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g--~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----N--S-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----C--C-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------
Confidence 566553333446677777766432 1 1 2467899999988 78999999999999743
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 016258 313 HSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~i 353 (392)
....+..+||.+|.. .+++++|+.+|+++.+.
T Consensus 91 ---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 91 ---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 125567899999999 89999999999999764
No 257
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=92.96 E-value=0.83 Score=44.85 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 016258 277 VSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQ 348 (392)
Q Consensus 277 ~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~ 348 (392)
.+..+||.++.. .+++++|+.+|+++++. .....+.+||.++.. .+++++|+.+|+
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------------GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 467788888888 78999999999888752 114567889999998 899999999999
Q ss_pred HHHHHH
Q 016258 349 EAIKRL 354 (392)
Q Consensus 349 eal~i~ 354 (392)
+++++-
T Consensus 428 ~A~~~~ 433 (490)
T 2xm6_A 428 TASTND 433 (490)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 999875
No 258
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.87 E-value=1.4 Score=49.47 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=89.6
Q ss_pred HHHHHHhhcHHHHHHHhhhcHHHHH---HHHHhcCCcH---HHHHHH--HHHHhhhhhhhhhhcchhHHHhHHHHHHHHH
Q 016258 190 AMRAFRAQNVESAKSRLSLCTEDIR---DQIERMGNTS---ELCSQL--GAVLGMLGDCCRAMGDADAAVAYFADSVEFL 261 (392)
Q Consensus 190 a~~a~~~g~~~~A~~~~~~c~~h~~---~~l~~~~~~~---~~C~~h--~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~ 261 (392)
+..+...|.+++|...|..+..+.. ..+.....-. ++.... ...+..+|..+...|++.+|+..|+.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 3477888999999999966553332 1222111111 122222 446667888887889999999888664
Q ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH---------hhcCCCCCcchh------hHHHH
Q 016258 262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA---------VKRHSNVPSQVL------DVAVS 326 (392)
Q Consensus 262 ~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~---------~~~~~~~~~~~~------dla~s 326 (392)
.+. ....+++......|++++|+.+|..+.+..+.. ..+. +....+. .. ..
T Consensus 1132 -----dD~-------say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~fI~~~n~-ad 1197 (1630)
T 1xi4_A 1132 -----DDP-------SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEFINGPNN-AH 1197 (1630)
T ss_pred -----CCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHHHhCCCH-HH
Confidence 121 134557888888999999999998877543110 0000 0011010 12 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 327 LAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 327 l~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+.++|+.+...|++++|+.+|+.+-
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNVS 1222 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhh
Confidence 4568999999999999999998873
No 259
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.19 E-value=4.1 Score=37.01 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=57.7
Q ss_pred hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016258 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL-------QAARSYYVRSLNVRRDAVKRHSNVPSQV 320 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l-------~~A~~~ye~sL~i~~~~~~~~~~~~~~~ 320 (392)
.+++..|+++... .+...++...+...+...+......|++ ++|+..|+++++. -.+.
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------~~p~----- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKK----- 97 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------TTTT-----
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------hCcc-----
Confidence 3455555555432 2444444444443333333333345765 6666666666641 1232
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHH
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRRLSVLEFL 377 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~-~l~~~~~~~~~l 377 (392)
-......++.++..+|++++|...|++++.+ +|.+.. +..+++.++..+
T Consensus 98 --~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 98 --NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------SSSCTHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------cccCccHHHHHHHHHHHHh
Confidence 1334567788888888888888888887752 455443 344444444333
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.42 E-value=4.7 Score=33.99 Aligned_cols=101 Identities=13% Similarity=-0.020 Sum_probs=62.3
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC--------
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-------- 314 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~-------- 314 (392)
..+.|..|+.+..-.......=..... .......+-.+|+..+..++|..|...|.++|..++.+.+...
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~s--p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFS--PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HhhhHHHHHHHHHHHHHhhcCCccccc--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 556677787777654444322111111 2334457788999999999999999999999998875432211
Q ss_pred ----CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258 315 ----NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 315 ----~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~ 346 (392)
.......| +...=+++.++..+++++.|+..
T Consensus 110 ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 110 ASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp -------CCCCH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcccccccch-HHHHHHHHHHHHHHCCHHHHHHH
Confidence 11111122 22334799999999998776643
No 261
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.38 E-value=1.5 Score=33.24 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=49.2
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.+|..++..+++..|+.-++.+......-... .......+..+|..+..+|+++.|+.+|++++++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~----~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIS----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC----SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCC----cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46677778899999999998886665322110 1122356789999999999999999999999865
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.29 E-value=3.5 Score=34.75 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=63.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hc-------
Q 016258 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TL------- 359 (392)
Q Consensus 288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~------- 359 (392)
..|.|+.|+-...-.+.+-.. .++ +......+..+..+|+++...|+|..|..+|++||.+.+.+ ..
T Consensus 32 d~~LY~sA~~La~lLlSl~~~----~~~-~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNN----NPE-LFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----STT-SSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HhhhHHHHHHHHHHHHHhhcC----Ccc-cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 567888888877777666332 221 22233456778999999999999999999999999999966 11
Q ss_pred -----------CCCchHHHHHHHHHHHHHHHH
Q 016258 360 -----------KPEEAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 360 -----------~p~~a~~l~~~~~~~~~l~~~ 380 (392)
-+.++.+..+++..+-.+++.
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 233456788888888887754
No 263
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.85 E-value=3.7 Score=30.63 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=43.2
Q ss_pred HHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYGGD---LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 279 ~~~lg~l~~~~g~---l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+..++...+..++ ..+|...|+++|++ ++. -...+..+|.++...|+|++|+.+|++.++
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-------dp~-------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQL-------EPY-------NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666655543 68888888888864 343 245677789999999999999988777653
No 264
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=90.59 E-value=0.4 Score=47.27 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=59.3
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--H--
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR--D-- 308 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~--~-- 308 (392)
.+..+|..|...|.+.+|+.+|... .-..++++.+..+|++++|.+.|+++..+.. .
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~ 184 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 184 (449)
T ss_dssp -------------CTTTHHHHHHHT-------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHH
Confidence 5556777888888899998888744 2467889999999999999999999865421 1
Q ss_pred ----------HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 309 ----------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 309 ----------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.+....-+.. -.+..+..+...|+..|.+++|+.+|++++
T Consensus 185 ~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0111111111 223335567789999999999999998885
No 265
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.32 E-value=0.24 Score=53.01 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=56.3
Q ss_pred CCeeccccccccccCceeccCC-CcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhchh
Q 016258 88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR 152 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~~ 152 (392)
+.|.|||-.++.. +|++++-| ++|=+..|.+|. .||.-+.++.. +.||..|+..|+.+...+..
T Consensus 890 ~~F~cPIs~~lM~-DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 890 DEFLDPLMYTIMK-DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp GGGBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred HHhCCcchhhHHh-CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 5799999999999 99999998 699999999993 49999998876 89999999999999875443
No 266
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.94 E-value=1.3 Score=40.81 Aligned_cols=87 Identities=5% Similarity=-0.191 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
..-.++.++...+++++|+.+|++++.. +. .. .-....-++|.++..+|++++|+.+|++++. -
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~--------~d---~~-~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g 200 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKW--------PD---KF-LAGAAGVAHGVAAANLALFTEAERRLTEAND----S 200 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGC--------SC---HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcc--------CC---cc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----C
Confidence 4566777999999999999999744321 10 00 1123556899999999999999999998862 1
Q ss_pred hcCCC-chHHHHHHHHHHHHHHHH
Q 016258 358 TLKPE-EAGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 358 ~~~p~-~a~~l~~~~~~~~~l~~~ 380 (392)
..+|. ......+++.++..+|+.
T Consensus 201 ~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 201 PAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred CCCccccHHHHHHHHHHHHHcCCH
Confidence 22244 445667777777777653
No 267
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=89.71 E-value=0.15 Score=50.30 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
....||+.....|.+++|+.+|.++ ....++++++..+|+++.|++.|+++..+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANST 177 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence 7788888888889999999988865 24678999999999999999999988544
No 268
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.35 E-value=2 Score=31.78 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+.|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3456666667777778899999999999999999987
No 269
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.34 E-value=1.3 Score=35.43 Aligned_cols=71 Identities=7% Similarity=-0.111 Sum_probs=54.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHh
Q 016258 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 282 lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~i~e~l 357 (392)
||.++...+.+++|+.+|+++.+. ..+....+||.++.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----
Confidence 888888888899999999998753 125678899999998 89999999999999753
Q ss_pred hcCCCchHHHHHHHHHHHH
Q 016258 358 TLKPEEAGLEQRRLSVLEF 376 (392)
Q Consensus 358 ~~~p~~a~~l~~~~~~~~~ 376 (392)
.++.-..+++.+|..
T Consensus 91 ----g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 91 ----NDQDGCLILGYKQYA 105 (138)
T ss_dssp ----TCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHC
Confidence 233345555655543
No 270
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=88.13 E-value=0.29 Score=44.08 Aligned_cols=44 Identities=25% Similarity=0.686 Sum_probs=36.8
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
...|.+|..++....++..|++.|=..|+..|+ .||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467999999988667777799999999999985 59999986543
No 271
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=87.94 E-value=2.5 Score=41.24 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=28.3
Q ss_pred chhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH-H--HhccCHHHHHHHHHHHHH
Q 016258 246 DADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-K--YYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 246 dhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l-~--~~~g~l~~A~~~ye~sL~ 304 (392)
++..++.+++.+. +... .+..+||.+ + ...+++++|+.+|+++++
T Consensus 232 d~~~A~~~~~~aa-------~g~~-------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 232 DEKTAQALLEKIA-------PGYP-------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp CHHHHHHHHHHHG-------GGST-------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-------CCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4466666665542 2222 356677777 3 345788888888888764
No 272
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=87.65 E-value=3.7 Score=30.29 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc---hHHHHHHHHHHHHHHHH
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE---AGLEQRRLSVLEFLNNQ 380 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~---a~~l~~~~~~~~~l~~~ 380 (392)
+.|..+-+.|.-....|++++|+.+|.++++.+... ...|+. ..+..++...+......
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~L 71 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYL 71 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677799999999999999999987 333332 23555555555544443
No 273
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=87.22 E-value=3.3 Score=40.92 Aligned_cols=62 Identities=5% Similarity=0.019 Sum_probs=35.4
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
.+..++......|++..|..+|+.+.. +.+.... ......+.+....|++++|+..|+++++
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344455555566777778777776643 2333221 2445555555556666666666666654
No 274
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=85.92 E-value=1.8 Score=31.60 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRRLSVLEFLNNQ 380 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~-~l~~~~~~~~~l~~~ 380 (392)
+.|.++...|++++|+..|++++.+ +|.+.. ...+++.++..+|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~ 51 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDW 51 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCH
Confidence 4677888899999999999888764 678777 888889888877753
No 275
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=85.43 E-value=6.3 Score=29.68 Aligned_cols=37 Identities=24% Similarity=0.119 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+.|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777899999999999999999997
No 276
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=84.14 E-value=4.6 Score=39.83 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
....++.++...|++++|+..|++++++
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 4667788888899999999999998863
No 277
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=83.68 E-value=0.036 Score=40.17 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHHHhCCCC
Q 016258 226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 226 ~C~~h~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~~ 267 (392)
.|+.|++.|.+||. .|. .++| |.++++.+++.+.+.+|...
T Consensus 20 ~C~~H~e~l~lfC~~d~~~iC~~C~-~~~H~~H~~~~l~ea~~~~k~~L~~~ 70 (72)
T 2csv_A 20 KCPVHGKTMELFCQTDQTCICYLCM-FQEHKNHSTVTVEEAKAEKETESGPS 70 (72)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHH-HTTTSSSCEEEHHHHHHHHSSCCCCC
T ss_pred cCcccCCceEEEeCCCCeEEccccC-CCCCCCCCEecHHHHHHHHHHHHHHh
Confidence 79999999999994 674 4888 99999999998888877653
No 278
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=83.26 E-value=4.3 Score=39.47 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 016258 279 LNKIGDLKYYG----GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-D--RSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 279 ~~~lg~l~~~~----g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~-~--~~~g~~~~A~~~~~eal 351 (392)
..+||.++... +++++|+.+|+++. + .....+.+||.+ + ...+++++|+.+|+++.
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----------~-------g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA----------P-------GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG----------G-------GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc----------C-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 36788888655 68899999888875 0 112345566665 3 44677777777776665
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=83.24 E-value=8 Score=28.69 Aligned_cols=40 Identities=23% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE 362 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~ 362 (392)
-|..+-.-|.-....|++++|+.+|.++++.+... ...|+
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d 55 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKD 55 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 34455556666677799999999999999999987 44444
No 280
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=82.51 E-value=10 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
.+.|..+...|.-....|++++|+.+|.++++.+...
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4456666666666667799999999999999999887
No 281
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.84 E-value=0.99 Score=43.07 Aligned_cols=58 Identities=24% Similarity=0.472 Sum_probs=43.5
Q ss_pred CeeccccccccccCceeccCCCcchHHh--H------HhcCCCCCCCCCccc--chhhhHHHHHHHHH
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKAC--I------SRFKDCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~C--i------~~~~~CP~C~~~~~~--~~~n~~l~~~v~~~ 146 (392)
.|.||+=...+..+.+...|.|.-|..- + ...|.||.|.+.+.. +..+..+.+++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 5899999988886677778999855432 1 123899999998866 88888887776543
No 282
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=80.94 E-value=9.8 Score=29.97 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
..+.|..|.+.|.-....|+|++|+.+|.++++++...
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666799999999999999999987
No 283
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=79.67 E-value=7.9 Score=37.01 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
...-++......|++++|+..+++++.+. +. +..+..+|.++...|+.++|++.|++|+.+--..
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s--------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE-------MS--------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34445555556699999999999999773 11 3355678999999999999999999988762111
Q ss_pred --hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 358 --TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 358 --~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
-.-..+..+-.++..|-.+|.|.++.
T Consensus 344 ~t~~~~~~l~F~sn~~~i~~~~~~~~~~ 371 (372)
T 3ly7_A 344 NTLYWIENGIFQTSVPYVVPYLDKFLAS 371 (372)
T ss_dssp HHHHHHHHSSSCCCHHHHCHHHHHHHHC
T ss_pred ChHHHHhCceeecchhhhHHHHHhcccc
Confidence 00011122334566777777777664
No 284
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.00 E-value=1.4 Score=41.81 Aligned_cols=57 Identities=18% Similarity=0.403 Sum_probs=42.9
Q ss_pred CeeccccccccccCceeccCCCcchHHh--H------HhcCCCCCCCCCccc--chhhhHHHHHHHH
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKAC--I------SRFKDCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~C--i------~~~~~CP~C~~~~~~--~~~n~~l~~~v~~ 145 (392)
.|.||+=...+..+.+...|.|.-|..- + ...|.||.|.+.+.. +..+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 5889999988886677778999855322 1 123899999998875 8888888777653
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.16 E-value=13 Score=35.91 Aligned_cols=86 Identities=9% Similarity=0.013 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
...+++.++...|+|.+|...+.+.++..+.+ +....+.+ .......+|..++++.++..+|.+|..+...+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-----dd~~~lle---v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKL-----DDKNLLVE---VQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-----SCTHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHH---HHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 45689999999999999999998877654432 12223333 34456678999999999999999999888766
Q ss_pred hcCCCchHHHHHHH
Q 016258 358 TLKPEEAGLEQRRL 371 (392)
Q Consensus 358 ~~~p~~a~~l~~~~ 371 (392)
-.+|...+.++..+
T Consensus 173 ~~~p~i~a~i~~~~ 186 (394)
T 3txn_A 173 YCPPKVQGALDLQS 186 (394)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 44555444443333
No 286
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=78.07 E-value=8.3 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
++|.-+..+|+|+.|+.+|+.++..+.+.
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 57777888999999999999999999998
No 287
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=77.40 E-value=0.62 Score=34.14 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=25.2
Q ss_pred CceeecCCCcccc---h---hhhhHHHHHHHhhcHHHHHHHhhhcHHHHHH-HHH
Q 016258 171 KKVIYEDVSMERG---A---FLVQQAMRAFRAQNVESAKSRLSLCTEDIRD-QIE 218 (392)
Q Consensus 171 ~~~~~Cd~C~~~~---~---cl~c~a~~a~~~g~~~~A~~~~~~c~~h~~~-~l~ 218 (392)
...+.||+|.+.+ + |+.|.+ +||+.|++. |..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~----------------s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEV----------------SYCDECLKATHPN 66 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTE----------------EECHHHHHHHSCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccc----------------hhhhhhhHhhcCC
Confidence 4568999998743 2 999999 999999986 543
No 288
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=76.80 E-value=5.6 Score=32.98 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i 353 (392)
++++++..+++.++.- .++ +..+.+-+||..+..+|+|++|..+++.++++
T Consensus 50 ~~~~gI~lLe~ll~~~------~p~------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKG------SKE------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHHHS------CHH------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC------Ccc------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 5556666666655431 011 23557889999999999999999988777654
No 289
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=73.56 E-value=7.1 Score=32.07 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~~~ 383 (392)
+|-+...-+.+......|+++++-....++..|+..| ..+.+ ..+..+|..+|.|+...|.+
T Consensus 30 ydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y~~~~L~~ 93 (145)
T 1vh6_A 30 YNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASMGAMYDYMYRRLVQ 93 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHH
Confidence 3444333345555556799999999999999999888 44444 77888999999999888754
No 290
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=72.99 E-value=15 Score=29.48 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hHHHHHHHHHHHHHHHHhhc
Q 016258 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~-a~~l~~~~~~~~~l~~~~~~ 383 (392)
+.+......|+++++-....++..|+..| ..+.+. ..+..++..+|.|+...+.+
T Consensus 41 ~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~ 98 (131)
T 3iqc_A 41 SQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQ 98 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHH
Confidence 34444455699999999999999999998 444444 36889999999999888754
No 291
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.54 E-value=29 Score=35.62 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL 303 (392)
.++++++.....|+++.|+..|.++-
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 67899999999999999999999853
No 292
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=69.39 E-value=23 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHhcCCH-HHH---HHHHHHHHHHHHHh--hcCCCc-hHHHHHHHHHHHHHHHHhhc
Q 016258 331 ADVDRSIGNE-DVA---VDGFQEAIKRLESL--TLKPEE-AGLEQRRLSVLEFLNNQLSE 383 (392)
Q Consensus 331 a~~~~~~g~~-~~A---~~~~~eal~i~e~l--~~~p~~-a~~l~~~~~~~~~l~~~~~~ 383 (392)
+......|++ +++ -....++..|+..| ..+.+. ..+..+|..+|.|+...++-
T Consensus 36 A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~LAn 95 (130)
T 1orj_A 36 AIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTLVK 95 (130)
T ss_dssp HHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHhc
Confidence 3333455888 887 78899999999998 555554 47899999999999988843
No 293
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=66.72 E-value=68 Score=28.25 Aligned_cols=89 Identities=9% Similarity=0.039 Sum_probs=59.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 016258 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~ 368 (392)
.|+.+.|...|++++++....+...+ + ..+...||.---.|+.+++-++|..+-++|..+.+.--..+++-+-..
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pth--P---irLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~ 212 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIE--Q---LPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKA 212 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGG--G---SCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCC--h---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 35688999999999998765332221 1 245666777677899999999999999999998766522333333344
Q ss_pred HHHHHHHHHHHHhh
Q 016258 369 RRLSVLEFLNNQLS 382 (392)
Q Consensus 369 ~~~~~~~~l~~~~~ 382 (392)
.+--+++.|++.+.
T Consensus 213 ~~~~~~q~~~d~~~ 226 (227)
T 2o8p_A 213 QITVYLQGIKDYIE 226 (227)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcc
Confidence 46677777776553
No 294
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=66.52 E-value=15 Score=27.66 Aligned_cols=42 Identities=26% Similarity=0.681 Sum_probs=32.4
Q ss_pred CCeeccccccccccCceeccC-CCcchHHhHHhcC----CCCCCCCCccc
Q 016258 88 GPLSCMICQALLFECSKCTPC-SHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C-~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|..|--.. . -.+.| -|-+|..|+.-.. .||.|..++..
T Consensus 27 G~~nCKsCWf~~--k-~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K-GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCC--S-SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhcccc--C-CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 578999997662 3 45555 5999999998874 39999987765
No 295
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=66.41 E-value=81 Score=29.07 Aligned_cols=74 Identities=8% Similarity=-0.023 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc----CCCchHH
Q 016258 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL----KPEEAGL 366 (392)
Q Consensus 291 ~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~----~p~~a~~ 366 (392)
++++|...|++.. +..+. .....-.++ ++..+|++++|...++..++..=.+.. +|+++..
T Consensus 193 ~~q~A~~~f~El~-------~~~p~-------~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 193 TATSNFYYYEELS-------QTFPT-------WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp TTTHHHHHHHHHH-------TTSCS-------HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred cHHHHHHHHHHHH-------HhCCC-------cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 7888888777743 23332 111111122 788999999999887755554433311 5889999
Q ss_pred HHHHHHHHHHHHH
Q 016258 367 EQRRLSVLEFLNN 379 (392)
Q Consensus 367 l~~~~~~~~~l~~ 379 (392)
+.|+..+...+|+
T Consensus 258 LaN~i~l~~~lgk 270 (310)
T 3mv2_B 258 LANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCh
Confidence 9888777777765
No 296
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=65.30 E-value=59 Score=33.23 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHhhhhhhhhhhcchhHHHhHHHHH
Q 016258 232 AVLGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 232 ~~L~~~c~~C~~~gdhh~a~~~~e~~ 257 (392)
..+..++..|...+++..|...|...
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 35677888887888888888888776
No 297
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.23 E-value=0.84 Score=34.63 Aligned_cols=40 Identities=28% Similarity=0.604 Sum_probs=28.4
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC---CCCCCCCCcccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEKI 133 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~~ 133 (392)
+..||+|+..+. . .=++.+|..|-..+. .||.|.+++..+
T Consensus 32 ~~~CP~Cq~eL~-~----~g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLD-Q----DNGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEE-E----ETTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred cccCccCCCcce-e----cCCEEECccccchhhccccCcchhhHHHHH
Confidence 389999998866 1 123445888887764 499999866553
No 298
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.21 E-value=89 Score=29.89 Aligned_cols=107 Identities=16% Similarity=-0.011 Sum_probs=69.8
Q ss_pred hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
-++.+++..|++.++..++.........+.+. ...+ +..-....++..++++.+++..|.++..+..... .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~----~~ll-ev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~---~- 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDK----NLLV-EVQLLESKTYHALSNLPKARAALTSARTTANAIY---C- 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT----HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---C-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccc----hhHH-HHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC---C-
Confidence 35677778999999988887766555555431 1222 2233334467778999999999999987754431 1
Q ss_pred CCcchhhHHHHHH-HHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 016258 316 VPSQVLDVAVSLA-KVADVDR-SIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 316 ~~~~~~dla~sl~-~la~~~~-~~g~~~~A~~~~~eal~i~e 355 (392)
++ .+-..+. --|.++. ..++|.+|..+|-++..-..
T Consensus 175 ~p----~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 175 PP----KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp CH----HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred CH----HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 11 2222333 3556777 78999999999988864443
No 299
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=61.48 E-value=0.024 Score=39.99 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHH-HHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHHHhCC
Q 016258 226 LCSQL-GAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 226 ~C~~h-~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~ 265 (392)
.|+.| ++.|.+||. .|...++| |.++++.+++.+.+.+|.
T Consensus 10 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~~L~ 60 (64)
T 2d8u_A 10 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTESG 60 (64)
T ss_dssp CCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTTTCCSSCCCCSS
T ss_pred cCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHHHHHHHHHHHHH
Confidence 68999 889999994 67455788 888888776655555544
No 300
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.16 E-value=14 Score=26.93 Aligned_cols=33 Identities=36% Similarity=0.749 Sum_probs=25.0
Q ss_pred CCeeccccccccccCceec-c--CCCcchHHhHHhc
Q 016258 88 GPLSCMICQALLFECSKCT-P--CSHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~--C~h~fC~~Ci~~~ 120 (392)
..|.|.+|.+.|.+.-++. | =.|.||..|-..+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence 4699999999999653332 1 2699999998766
No 301
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=59.32 E-value=35 Score=33.85 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
.......+-.||+|..+...+..|..+|.+++.+ .| +.....++||.+....|+.-.|+-+|-+++
T Consensus 148 ~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-------~P-------~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VP-------SNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CT-------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh-------CC-------CCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3345567888999999999999999999999865 23 345678999999999999988888887765
Q ss_pred H
Q 016258 352 K 352 (392)
Q Consensus 352 ~ 352 (392)
.
T Consensus 214 ~ 214 (497)
T 1ya0_A 214 A 214 (497)
T ss_dssp S
T ss_pred h
Confidence 4
No 302
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=54.79 E-value=16 Score=33.68 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYG-----GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS-IGNEDVAVDGFQEA 350 (392)
Q Consensus 277 ~~~~~lg~l~~~~-----g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~-~g~~~~A~~~~~ea 350 (392)
.+..-+|.++... |+.++|..+|+++|++. +.. .+...-..|+.+.. +|+++.|..+++++
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------P~~------~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------SAH------DPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-------CTT------CSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-------CCC------CchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4677889999885 89999999999999872 211 02234456777766 59999999998888
Q ss_pred HH
Q 016258 351 IK 352 (392)
Q Consensus 351 l~ 352 (392)
+.
T Consensus 267 L~ 268 (301)
T 3u64_A 267 LA 268 (301)
T ss_dssp HH
T ss_pred Hc
Confidence 65
No 303
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.69 E-value=83 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=23.1
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258 286 KYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 286 ~~~~g~l~~A~~~ye~sL~i~~~~~~~~ 313 (392)
....|++++|+.+|.++++....++...
T Consensus 28 ~D~ag~y~eAl~lY~~Aie~l~~alk~e 55 (117)
T 2cpt_A 28 EDKAGNYEEALQLYQHAVQYFLHVVKYE 55 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455899999999999999888777655
No 304
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=48.19 E-value=97 Score=28.29 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccC------HHHHHHHHHHHHHHH----------HHHhhcCCCCCcchh-------h-------HHHHHH
Q 016258 279 LNKIGDLKYYGGD------LQAARSYYVRSLNVR----------RDAVKRHSNVPSQVL-------D-------VAVSLA 328 (392)
Q Consensus 279 ~~~lg~l~~~~g~------l~~A~~~ye~sL~i~----------~~~~~~~~~~~~~~~-------d-------la~sl~ 328 (392)
.+.-+.+....+. ++++++++.+++.+. +.++.......+.+. + -...+.
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 262 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALE 262 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 3444555555555 778888888777632 222222222111111 1 124577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 016258 329 KVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 329 ~la~~~~~~g~~~~A~~~~~ea 350 (392)
.+++++...|++++|++.|+.+
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHH
Confidence 8999999999988777766654
No 305
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.47 E-value=32 Score=28.03 Aligned_cols=39 Identities=28% Similarity=0.586 Sum_probs=27.4
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHh---------------cCCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISR---------------FKDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~---------------~~~CP~C~~ 128 (392)
+..|.+|.+-=. =.-.-.|-.+||..||.. .|.||.|..
T Consensus 63 ~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467888876411 223447889999999972 277999975
No 306
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.46 E-value=1.1e+02 Score=28.83 Aligned_cols=37 Identities=5% Similarity=-0.138 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~ 306 (392)
++...+....+.+........+.+.....|...|+.+
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~ 121 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSR 121 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 3333333444444444444445555555555555433
No 307
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.31 E-value=2.9 Score=30.74 Aligned_cols=38 Identities=24% Similarity=0.691 Sum_probs=24.0
Q ss_pred eeccccccccccCceeccCCCcchHHhHHhcC---CCCCCCCCccc
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
+.||.|...+.-+.. +.+|..|-..+. -||.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~-----~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-----TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS-----EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC-----ceECccccccCCCcccCcchhhHHHH
Confidence 678888877652222 334777765553 48999876554
No 308
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=43.99 E-value=74 Score=31.85 Aligned_cols=80 Identities=11% Similarity=-0.117 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGG--DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~~~~lg~l~~~~g--~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~i~ 354 (392)
++..-+.+....+ ++++++..|.+++++ ++.+ ...+++.+-+...+| .+++|++++++++
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-------d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I--- 171 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEA-------DERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLI--- 171 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhh-------cccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHH---
Confidence 4556666777778 778999988888875 2221 335666777777888 6666666655544
Q ss_pred HHhhcCCCchHHHHHHHHHHHHH
Q 016258 355 ESLTLKPEEAGLEQRRLSVLEFL 377 (392)
Q Consensus 355 e~l~~~p~~a~~l~~~~~~~~~l 377 (392)
..+|.+...-..++.++..+
T Consensus 172 ---~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 172 ---TRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp ---TTTCCCHHHHHHHHHHHHHH
T ss_pred ---HHCCCCccHHHHHHHHHHhh
Confidence 55777777766677776665
No 309
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=42.37 E-value=0.16 Score=34.22 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhh--------hhhhhcch--hHHHhHH
Q 016258 226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAYF 254 (392)
Q Consensus 226 ~C~~h~~~L~~~c~--------~C~~~gdh--h~a~~~~ 254 (392)
.|+.|++.|.+||. .|...++| |.++++.
T Consensus 10 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 10 LCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECC
T ss_pred cChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHH
Confidence 68999999999994 57444777 6665543
No 310
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=42.35 E-value=0.047 Score=40.71 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=32.3
Q ss_pred HHHHH-HHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHHHhCCCCCh
Q 016258 226 LCSQL-GAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 226 ~C~~h-~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~~~~ 269 (392)
.|+.| ++.|.+||. .|...++| |.++++.+++.+.+.+|.....
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~L~~~l~ 74 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLT 74 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 69999 688999984 67445888 8888888777666666655443
No 311
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=41.67 E-value=29 Score=33.15 Aligned_cols=58 Identities=21% Similarity=0.490 Sum_probs=36.1
Q ss_pred CeeccccccccccCceec--cCCCcchHHhHHhc--------------CCCCCCCCCccc--chhhhHHHHHHHHHH
Q 016258 89 PLSCMICQALLFECSKCT--PCSHVYCKACISRF--------------KDCPLCGADIEK--IEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~--~C~h~fC~~Ci~~~--------------~~CP~C~~~~~~--~~~n~~l~~~v~~~~ 147 (392)
+..|.+|-+-=. =..+- .|...||..||... |.|=.|.-.-.. +.+...+...+..|.
T Consensus 93 ~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll~~r~~w~~~~~~f~ 168 (386)
T 2pv0_B 93 QSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQRRRKWRSQLKAFY 168 (386)
T ss_dssp BCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTEEBCSSHHHHHHHHH
T ss_pred cccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhhhhhhhHHHHHHHHH
Confidence 467888876421 23333 78899999999775 679999754322 444344444444444
No 312
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=41.00 E-value=37 Score=23.62 Aligned_cols=40 Identities=23% Similarity=0.590 Sum_probs=26.1
Q ss_pred eeccccccccccCceeccCCCcchHHhHHhc--------CCCCCCCCCc
Q 016258 90 LSCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGADI 130 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--------~~CP~C~~~~ 130 (392)
-.|.||.+- .+-...-.|...|-..|+... |.||.|....
T Consensus 13 ~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 13 ARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 457777654 213344457778888888533 6799997643
No 313
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=40.83 E-value=14 Score=28.86 Aligned_cols=44 Identities=20% Similarity=0.432 Sum_probs=36.2
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc--CCCCCCCCCccc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~~~~ 132 (392)
-|.|..|...|...+....=+..||..|..+. ..|..|+.++..
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 48999999998866777778899999999876 469999987763
No 314
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=40.56 E-value=1.6e+02 Score=24.65 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHH
Q 016258 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~ 257 (392)
-|+..||++.|..... + + .....++.+|+.+...|+|+-|...|...
T Consensus 14 LAL~lg~l~~A~e~a~---~-----l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAK---K-----L-----------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHH---H-----H-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHH---H-----h-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4567788887776432 0 0 01235667788777778887777776655
No 315
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.91 E-value=15 Score=27.46 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=34.3
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhcC--CCCCCCCCcc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~ 131 (392)
=|.|..|...|........=+..||..|..+.. .|..|...+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 488999999887556666778899999997764 5999987665
No 316
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.90 E-value=7.8 Score=27.12 Aligned_cols=31 Identities=26% Similarity=0.685 Sum_probs=25.0
Q ss_pred CeeccccccccccCceeccC-CCcchHHhHHhcC
Q 016258 89 PLSCMICQALLFECSKCTPC-SHVYCKACISRFK 121 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C-~h~fC~~Ci~~~~ 121 (392)
.--|-||.+- - .-+++.| +-.||..|+.+..
T Consensus 8 ~pWC~ICneD-A-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNED-A-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSC-C-CEEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCC-C-eEEecCCCCceehHHHHHHHc
Confidence 3558999988 4 5788899 8999999997764
No 317
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.79 E-value=32 Score=25.26 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=34.2
Q ss_pred hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
..+..+++++.. +.+... .++--+|.++...|++++|+.+|++.++
T Consensus 26 ~~A~~~l~~AL~----~dp~~~-------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQ----LEPYNE-------AALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----HCcCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677777766644 334333 2566779999999999999999999874
No 318
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=38.43 E-value=8.3 Score=28.07 Aligned_cols=21 Identities=24% Similarity=0.903 Sum_probs=18.0
Q ss_pred cCCCcchHHhHHhcCCCCCCCC
Q 016258 107 PCSHVYCKACISRFKDCPLCGA 128 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~~CP~C~~ 128 (392)
.|++.||..|...|.. -.|..
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSS
T ss_pred CCCCeeccccCccccC-Ccccc
Confidence 6999999999999977 66754
No 319
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.27 E-value=1.3e+02 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 016258 337 IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 337 ~g~~~~A~~~~~eal~i~e~l 357 (392)
.|+.+.|+++|++.+.-|++=
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 388999999999999998884
No 320
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=37.61 E-value=1.8e+02 Score=26.62 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e 349 (392)
..--+|.++...|++++|+..+.+.+.. .+. .+-...+..++.++..+|+.+.|...+++
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~-------~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN-------DEA-----EGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS-------SCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3457888999999999999988887421 110 01122334455666666666666655443
No 321
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.41 E-value=9.5 Score=30.53 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHH-------------HHHHHHHHHhcC
Q 016258 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVS-------------LAKVADVDRSIG 338 (392)
Q Consensus 272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~s-------------l~~la~~~~~~g 338 (392)
...++.....+..+......+..++..|+++++..+.+.. ......+..+..+ +-|||.=+..-.
T Consensus 7 ~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~ 84 (133)
T 1fxk_C 7 VAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK 84 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEe
Confidence 3344444555556666666777888888899887777553 1112111111100 111221111113
Q ss_pred CHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHh
Q 016258 339 NEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 339 ~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
..++|++++++-++.++.. .-......+..++..+...+...+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588888888888888776 333444455566666666665554
No 322
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=36.35 E-value=3.3e+02 Score=26.97 Aligned_cols=112 Identities=6% Similarity=-0.064 Sum_probs=61.4
Q ss_pred hhcch-hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016258 243 AMGDA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD---LQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 243 ~~gdh-h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~---l~~A~~~ye~sL~i~~~~~~~~~~~~~ 318 (392)
..+++ .+|+..++.... +.++...+ ++.-+.+....|+ -+.....|+++++....+....+.+
T Consensus 40 ~~~~~~eeal~~~~~~l~----~nP~~~ta-------W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-- 106 (567)
T 1dce_A 40 QAGELDESVLELTSQILG----ANPDFATL-------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-- 106 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH----HCTTCHHH-------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--
T ss_pred HcCCCCHHHHHHHHHHHH----HCchhHHH-------HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC--
Confidence 44555 566666655432 23333333 3333333333333 1223334445555555555555553
Q ss_pred chhhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258 319 QVLDVAVSLAKVADVDRSIG--NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN 378 (392)
Q Consensus 319 ~~~dla~sl~~la~~~~~~g--~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~ 378 (392)
.....+.+-+...+| ++++|++.++++++ .+|.+...-..++.++..++
T Consensus 107 -----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~------~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 107 -----YGTWHHRCWLLSRLPEPNWARELELCARFLE------ADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp -----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHcccccHHHHHHHHHHHHh------hccccccHHHHHHHHHHHcC
Confidence 345777788888888 55777777777665 46666665555666666555
No 323
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=35.67 E-value=2.3e+02 Score=27.89 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQL 381 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~ 381 (392)
++|++.|++|++.++.+ ..++.....--.++..|+.-|+..
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDyy 491 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDYY 491 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHHH
Confidence 58999999999999998 444444444455666677766654
No 324
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=35.12 E-value=1e+02 Score=28.40 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHH
Q 016258 324 AVSLAKVADVDRSI-----GNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 324 a~sl~~la~~~~~~-----g~~~~A~~~~~eal~i~e 355 (392)
.....-+|.+|..+ |+.++|..+|++|++|--
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP 235 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS 235 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC
Confidence 44667789999996 999999999999998754
No 325
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=34.66 E-value=40 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.602 Sum_probs=17.7
Q ss_pred CCeeccccccccccCceec---cCCCcchHHhHHhc
Q 016258 88 GPLSCMICQALLFECSKCT---PCSHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~~ 120 (392)
.+-.|.||...- ....+ -|+.+|=..|+.+.
T Consensus 14 ~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc--ccceeccccccccccHhhcccc
Confidence 356778877442 22222 25566667888764
No 326
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=34.60 E-value=83 Score=24.91 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 301 ~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+.+.+.+.++.... +. .....+-.||..+.++|+|.+|..+++..|
T Consensus 56 ~GI~lLe~l~~~~~--p~---~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 56 KGIVLLEELLPKGS--KE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHTTTSC--HH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--cc---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555555555431 11 234467789999999999999987765544
No 327
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.36 E-value=0.23 Score=34.29 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhh--------hhhhhcch--hHHHhH
Q 016258 226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAY 253 (392)
Q Consensus 226 ~C~~h~~~L~~~c~--------~C~~~gdh--h~a~~~ 253 (392)
.|+.|++.|.+||. .|...++| |.++++
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcCCCCcEeeH
Confidence 68999999999994 56444777 665544
No 328
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=33.81 E-value=0.38 Score=31.75 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHHH-HHHHhhhhh--------hhhhhcch--hHHHhHHH
Q 016258 226 LCSQL-GAVLGMLGD--------CCRAMGDA--DAAVAYFA 255 (392)
Q Consensus 226 ~C~~h-~~~L~~~c~--------~C~~~gdh--h~a~~~~e 255 (392)
.|+.| ++.|.+||. .| ..++| |.++++.+
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C-~~~~H~~H~~~~l~e 47 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDC-QLNAHKDHQYQFLED 47 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHH-HHTTTTTCCEEETTC
T ss_pred cCcCCCCCCEEEEeCCCCEEEeccc-CCCcCCCCceecHHH
Confidence 58889 889999985 56 34677 66655543
No 329
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.47 E-value=8.5 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.684 Sum_probs=19.7
Q ss_pred eccccccccccC-----ceeccCCCcchHHhHHhc
Q 016258 91 SCMICQALLFEC-----SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 91 ~C~iC~~~~~~~-----p~~~~C~h~fC~~Ci~~~ 120 (392)
-||-|...+..+ ..+..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 377777654321 233359999999888777
No 330
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.62 E-value=55 Score=27.13 Aligned_cols=40 Identities=25% Similarity=0.712 Sum_probs=26.3
Q ss_pred CeeccccccccccCceec--cCCCcchHHhHHhc--------------CCCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCT--PCSHVYCKACISRF--------------KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~--~C~h~fC~~Ci~~~--------------~~CP~C~~~ 129 (392)
+..|.||-+-=. =...- .|-..||..||... |.|=.|.-.
T Consensus 79 ~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 467788875311 11122 57789999999775 669888753
No 331
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.45 E-value=42 Score=33.18 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016258 341 DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 341 ~~A~~~~~eal~i~e~l 357 (392)
+--++.|+...+.|+++
T Consensus 172 ~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHH
Confidence 44455677777888887
No 332
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.36 E-value=1.3e+02 Score=25.26 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258 277 VSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~ 304 (392)
..++.||+..-..|+++-|...|.++-+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3688899999999999999999998554
No 333
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=29.68 E-value=0.45 Score=30.10 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhh--------hhhhhcch
Q 016258 226 LCSQLGAVLGMLGD--------CCRAMGDA 247 (392)
Q Consensus 226 ~C~~h~~~L~~~c~--------~C~~~gdh 247 (392)
.|+.|++.|.+||. .|...++|
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCC
Confidence 57888889999995 56344666
No 334
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=29.51 E-value=39 Score=25.12 Aligned_cols=43 Identities=23% Similarity=0.628 Sum_probs=28.9
Q ss_pred eecccccccccc----Cc--eeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258 90 LSCMICQALLFE----CS--KCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~----~p--~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
-.|.||-+-+-. ++ .+-.|+-..|+.|++-- ..||.|+..+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 568888775221 12 34468888899998543 459999987653
No 335
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.41 E-value=41 Score=32.42 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e 355 (392)
...++|+++...|++++|...|.+....-. .. . .+...+-.+..++...+++..+..+++++..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~---~---~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~ 199 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----ST---G---AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CC---C---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----Ch---H---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 456789999999999999999988664321 11 1 1233333445566667888888888888765554
No 336
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=29.31 E-value=44 Score=22.79 Aligned_cols=37 Identities=32% Similarity=0.782 Sum_probs=26.6
Q ss_pred eeccccccccccCc--eeccCCCcchHHhHHh----cCCCCCC
Q 016258 90 LSCMICQALLFECS--KCTPCSHVYCKACISR----FKDCPLC 126 (392)
Q Consensus 90 ~~C~iC~~~~~~~p--~~~~C~h~fC~~Ci~~----~~~CP~C 126 (392)
..|--|+..|.+.. ....|++.||..|=.= ...||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35889998876322 3678999999999432 2569887
No 337
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.94 E-value=0.71 Score=31.53 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhh
Q 016258 226 LCSQLGAVLGMLGD 239 (392)
Q Consensus 226 ~C~~h~~~L~~~c~ 239 (392)
.|+.|++.|.+||.
T Consensus 20 ~C~~H~e~L~lfC~ 33 (57)
T 2egm_A 20 ICPKHQEALKLFCE 33 (57)
T ss_dssp BCTTTCCBCCEEET
T ss_pred cChhhCceeeEEcC
Confidence 69999999999995
No 338
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=28.87 E-value=3.1e+02 Score=24.44 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHh
Q 016258 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD----GFQEAIKRLESL 357 (392)
Q Consensus 292 l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~----~~~eal~i~e~l 357 (392)
.+.|...|++++++....+ .+.++ .-|...||.---.|+.+++-++|.. .|.+|+..+..|
T Consensus 151 ~e~a~~aY~~A~~iA~~~L--~pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L 215 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTEL--APTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 215 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHS--CTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 3567788889888865432 22222 2355556666667888899877765 567777778887
No 339
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=28.61 E-value=1.8e+02 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 301 ~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
+.+.+.+.+....++ .....|=.||..+.++|+|.+|..+.+
T Consensus 60 ~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 60 LGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444455444443 235567789999999999988886643
No 340
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=28.07 E-value=4.2e+02 Score=25.67 Aligned_cols=85 Identities=15% Similarity=0.032 Sum_probs=57.4
Q ss_pred hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d 322 (392)
..|+...|..++++... ..+.+.. .+.+.|=..+-..|++++|...|+++.+. +-.+ +
T Consensus 117 ~~g~~~~A~~l~~~M~~--~g~~Pd~--------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----G~~P-------d 174 (501)
T 4g26_A 117 AKDDPEMAFDMVKQMKA--FGIQPRL--------RSYGPALFGFCRKGDADKAYEVDAHMVES-----EVVP-------E 174 (501)
T ss_dssp HHTCHHHHHHHHHHHHH--TTCCCCH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCCC-------C
T ss_pred hcCCHHHHHHHHHHHHH--cCCCCcc--------ceehHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC-------C
Confidence 66777888877765422 1233321 24566666677789999999998887631 2223 2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~ea 350 (392)
..+++-|-.++...|+.++|..+|++-
T Consensus 175 -~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 175 -EPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 447888889999999999998876653
No 341
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.86 E-value=14 Score=28.45 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=18.9
Q ss_pred ccCceeccCCCcchHHhHHhcCCCCCCCCC
Q 016258 100 FECSKCTPCSHVYCKACISRFKDCPLCGAD 129 (392)
Q Consensus 100 ~~~p~~~~C~h~fC~~Ci~~~~~CP~C~~~ 129 (392)
..++.+..||+.|+ .=+..-..||.|+..
T Consensus 65 v~p~~C~~CG~~F~-~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-AEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCC-CCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCeec-ccCCCCCCCcCCCCC
Confidence 33889999999992 111111459999864
No 342
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=27.46 E-value=5.1e+02 Score=26.41 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=48.4
Q ss_pred HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHhh
Q 016258 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g-~l~~A~~~ye~sL~i~~~~~~ 311 (392)
.+..|.+..+..|+...|..+++.+.... ......+ .-..+.+....+ +.+.|...|+..|+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~~~~l-------yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~----- 500 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLVTPDI-------YLENAYIEYHISKDTKTACKVLELGLKYF----- 500 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGSCTHH-------HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCChHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----
Confidence 34444555555566677777777664321 1111111 112344555544 4777888777777642
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
+.. ...+...++....+|+.+.|..+|+.++.
T Consensus 501 --p~~-------~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 501 --ATD-------GEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp --TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred --CCc-------hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 111 11123344445555666666666666554
No 343
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=27.14 E-value=46 Score=22.56 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=26.0
Q ss_pred CCeeccccccccccCceeccCCCcchHHhHHhc--------CCCCCCCC
Q 016258 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGA 128 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--------~~CP~C~~ 128 (392)
....|.||... -+-...-.|...|-..|+... |.||.|..
T Consensus 10 ~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45678888764 212334457777778888652 66999964
No 344
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=26.74 E-value=1.6e+02 Score=26.52 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hhcCCCchHHH
Q 016258 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES----LTLKPEEAGLE 367 (392)
Q Consensus 292 l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~----l~~~p~~a~~l 367 (392)
.+.|...|++++++....++..+.++ .-+...||.----|+.+++-++|..+-++|..--.. +..-+++.
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThP---iRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde~~~AIaeld~L~ees--- 241 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDP---LYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENT--- 241 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCH---HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CCCHHH---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHhccCChHH---
Confidence 45777888899888765442233332 235555665555777889999999887777665111 21112222
Q ss_pred HHHHHHHHHHHHHhh
Q 016258 368 QRRLSVLEFLNNQLS 382 (392)
Q Consensus 368 ~~~~~~~~~l~~~~~ 382 (392)
-.+++.|++.+.
T Consensus 242 ---tlImQLLRDNLt 253 (268)
T 3efz_A 242 ---EKLLKILRDNVS 253 (268)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 567777777664
No 345
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.64 E-value=1.7e+02 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 286 ~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
....|++++|+.+|.++++....++...++
T Consensus 21 ~D~~g~y~eAl~lY~~aie~l~~~lk~e~d 50 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIEVLSQIIVLYPE 50 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 356699999999999999987777655443
No 346
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=26.47 E-value=0.87 Score=29.73 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHH-HHHhhhhh--------hhhhhcch--hHHHh
Q 016258 226 LCSQLG-AVLGMLGD--------CCRAMGDA--DAAVA 252 (392)
Q Consensus 226 ~C~~h~-~~L~~~c~--------~C~~~gdh--h~a~~ 252 (392)
.|+.|+ +.|.+||. .|...++| |.+++
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 45 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAP 45 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSCEEE
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCCCcEEe
Confidence 588887 78899985 57445667 55443
No 347
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=25.99 E-value=2.5e+02 Score=28.72 Aligned_cols=73 Identities=4% Similarity=0.022 Sum_probs=39.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHh----hcCCCCCcch----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAV----KRHSNVPSQV----LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~----~~~~~~~~~~----~dla~sl~~la~~~~~~g~~~~A~~~~~eal~ 352 (392)
....+....|+++.|...|+++++...... ...+.....+ .+.....-..+......|..+.|...|.+|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445567777999999999999998542111 1112110000 01111222233455555667777777777665
Q ss_pred H
Q 016258 353 R 353 (392)
Q Consensus 353 i 353 (392)
.
T Consensus 463 ~ 463 (679)
T 4e6h_A 463 L 463 (679)
T ss_dssp T
T ss_pred h
Confidence 3
No 348
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.96 E-value=11 Score=22.73 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=7.7
Q ss_pred Ceeccccccccc
Q 016258 89 PLSCMICQALLF 100 (392)
Q Consensus 89 ~~~C~iC~~~~~ 100 (392)
.|.||+|...|.
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 367777766655
No 349
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.92 E-value=1.9e+02 Score=20.88 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 286 ~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~ 315 (392)
....|++++|+.+|.++++....++...++
T Consensus 29 ~D~~g~y~eAl~lY~~aie~l~~alk~e~d 58 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIEVLAQLVSLYRD 58 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 356799999999999999987777655443
No 350
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=25.19 E-value=1.5e+02 Score=23.64 Aligned_cols=26 Identities=12% Similarity=-0.089 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258 323 VAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 323 la~sl~~la~~~~~~g~~~~A~~~~~ 348 (392)
....|=.||..+.++|+|..|..+.+
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567788999999999988886633
No 351
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.40 E-value=14 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.649 Sum_probs=18.5
Q ss_pred eeccccccccccC-----ceecc--CCCcchHHhHHhc
Q 016258 90 LSCMICQALLFEC-----SKCTP--CSHVYCKACISRF 120 (392)
Q Consensus 90 ~~C~iC~~~~~~~-----p~~~~--C~h~fC~~Ci~~~ 120 (392)
-.||-|...+... -.... |++.||..|...|
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 4577776665532 12222 7788888777665
No 352
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=24.32 E-value=16 Score=32.94 Aligned_cols=34 Identities=26% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l 357 (392)
|..+-+-|.-....|+|++|+.+|+++++++...
T Consensus 23 Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 23 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3344455555666799999999999999999887
No 353
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=23.40 E-value=1.1e+02 Score=25.11 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=35.0
Q ss_pred hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i 305 (392)
.+++.++++....- .++ .-.+.+-.|+-.++..|+|++|+.++++.|++
T Consensus 52 ~~gI~lLe~ll~~~------~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 52 RKGIVLLEELLPKG------SKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHS------CHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC------Ccc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 67777776553321 111 22356788898999999999999999999976
No 354
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.24 E-value=3.7e+02 Score=26.14 Aligned_cols=61 Identities=11% Similarity=-0.068 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal 351 (392)
+.+.|-..+-..|++++|...|+++.+. +-.+ + ..+++-|-..+...|+.++|...|++..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~P-------d-~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQP-------R-LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCC-------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-------c-cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666777777889999999998886531 1222 3 4477888888999999999988876643
No 355
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.15 E-value=21 Score=28.77 Aligned_cols=31 Identities=26% Similarity=0.692 Sum_probs=23.1
Q ss_pred CCeecccccccc-cc---CceeccCCCcchHHhHH
Q 016258 88 GPLSCMICQALL-FE---CSKCTPCSHVYCKACIS 118 (392)
Q Consensus 88 ~~~~C~iC~~~~-~~---~p~~~~C~h~fC~~Ci~ 118 (392)
+.-.|.+|...| +- ..++..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 457899999877 21 34677899999988854
No 356
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.14 E-value=30 Score=27.43 Aligned_cols=31 Identities=23% Similarity=0.760 Sum_probs=22.3
Q ss_pred Ceecccccccccc---CceeccCCCcchHHhHHh
Q 016258 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISR 119 (392)
Q Consensus 89 ~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~ 119 (392)
...|.+|...|.- .--+-.||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4578999886541 245668999999988643
No 357
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.88 E-value=14 Score=34.31 Aligned_cols=41 Identities=15% Similarity=0.433 Sum_probs=29.4
Q ss_pred CCeeccccccccccCceec----cCC--CcchHHhHHhc----CCCCCCCCC
Q 016258 88 GPLSCMICQALLFECSKCT----PCS--HVYCKACISRF----KDCPLCGAD 129 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~----~C~--h~fC~~Ci~~~----~~CP~C~~~ 129 (392)
..-.||||-.... -.++. .=| +.+|..|-..| ..||.|...
T Consensus 181 ~~~~CPvCGs~P~-~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPM-AGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEE-EEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCc-eeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4578999998865 33433 234 56699999998 469999875
No 358
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=22.31 E-value=1.3e+02 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 016258 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 363 (392)
Q Consensus 321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~ 363 (392)
+..|..|-+.|.++..-|+++.|--+|-+-+.++..+..||+-
T Consensus 39 ~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdy 81 (144)
T 2a9u_A 39 VHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDF 81 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3456677778999999999999999999999999777777764
No 359
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.13 E-value=2.3e+02 Score=20.90 Aligned_cols=39 Identities=23% Similarity=0.657 Sum_probs=21.6
Q ss_pred CCeeccccccccccCceeccCC------CcchHHhHHh------cCCCCCCCCC
Q 016258 88 GPLSCMICQALLFECSKCTPCS------HVYCKACISR------FKDCPLCGAD 129 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~------h~fC~~Ci~~------~~~CP~C~~~ 129 (392)
+...| ||..... . .++.|- .-|=..|+.- .|.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 45777 8888633 2 344332 2344455421 2679999764
No 360
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.79 E-value=1.6e+02 Score=21.10 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 286 ~~~~g~l~~A~~~ye~sL~i~~~~~~~~~ 314 (392)
+-..|+|+.|+.+|+..++...+....-.
T Consensus 22 ~Al~GnYdta~~yY~g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 22 YALLGNYDSAMVYYQGVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 33459999999999999998777655443
No 361
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.60 E-value=4.1e+02 Score=23.28 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258 322 DVAVSLAKVADVDRSIGNEDVAV----DGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEK 384 (392)
Q Consensus 322 dla~sl~~la~~~~~~g~~~~A~----~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~ 384 (392)
||.+..++||.++..+|..+... +.|+-.++.++..+ -...-..++...+...+.....+.
T Consensus 63 dl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E--~svqp~R~~R~~l~~~I~kLk~k~ 127 (234)
T 3plt_A 63 DVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIE--ASVQPSRDRKEKITDEIAHLKYKD 127 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHhccC
Confidence 66677778887777776654443 33444444444432 233344666666666666554443
No 362
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.42 E-value=2.6e+02 Score=27.67 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=6.5
Q ss_pred HHHHHHHHhhc
Q 016258 373 VLEFLNNQLSE 383 (392)
Q Consensus 373 ~~~~l~~~~~~ 383 (392)
.|..+.+||++
T Consensus 177 sY~~~QKQLeQ 187 (562)
T 3ghg_A 177 DYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666655
No 363
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.39 E-value=50 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=24.9
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
=|.|..|...|........=+..||..|..+.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 48899998888766666677888999887654
No 364
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.38 E-value=43 Score=35.20 Aligned_cols=44 Identities=32% Similarity=0.808 Sum_probs=31.0
Q ss_pred CCeeccccccccccC---------ceeccCCCcc--------------------hHHhHHhcC------------CCCCC
Q 016258 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C 126 (392)
+.-.|+-|+..++|+ ..++.||..| |..|..++. .||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 456788888777642 2355677776 999998872 39999
Q ss_pred CCCcc
Q 016258 127 GADIE 131 (392)
Q Consensus 127 ~~~~~ 131 (392)
+=.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 86654
No 365
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.76 E-value=70 Score=25.49 Aligned_cols=39 Identities=28% Similarity=0.582 Sum_probs=26.5
Q ss_pred CeeccccccccccCceeccCCCcchHHhHHhc---------------CCCCCCCC
Q 016258 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF---------------KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~---------------~~CP~C~~ 128 (392)
+..|.||.+-=. =.-.-.|-..||..||.+. |.|+.|+-
T Consensus 57 ~~~C~vC~dGG~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCe-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 355888875311 1233468899999999731 78999964
No 366
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=20.42 E-value=39 Score=25.00 Aligned_cols=32 Identities=31% Similarity=0.841 Sum_probs=22.7
Q ss_pred CCeeccccccccc---cCceeccCCCcchHHhHHh
Q 016258 88 GPLSCMICQALLF---ECSKCTPCSHVYCKACISR 119 (392)
Q Consensus 88 ~~~~C~iC~~~~~---~~p~~~~C~h~fC~~Ci~~ 119 (392)
+...|.+|...|. -.-....||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3467999987653 1345668999999998644
No 367
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.24 E-value=36 Score=28.06 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=28.4
Q ss_pred CCeeccccccccc----cCceeccCCCcchHHhHHh-----cCCCCCCCC
Q 016258 88 GPLSCMICQALLF----ECSKCTPCSHVYCKACISR-----FKDCPLCGA 128 (392)
Q Consensus 88 ~~~~C~iC~~~~~----~~p~~~~C~h~fC~~Ci~~-----~~~CP~C~~ 128 (392)
.+-.|.+|+..|. ...++..|.|.+|..|-.. .|.|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 4678999998642 1467778999999988632 155666654
Done!