BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016259
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 205 GAMFCLLASSTCHLLCCHSERLSYIMLRLDYAG------IAALISTSFYPPIYYSFMCYP 258
G +F +T L C + R Y G I A + + F + Y+F
Sbjct: 199 GEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT 258
Query: 259 FLCNLYLGFITVLGIATIVISLLPVFE-KPKFRSFRASLFFGMGISGVAPVLHKLILFRD 317
LC + +T++ I + V E P F+ RA + +SG+ + + I++RD
Sbjct: 259 DLCLV----MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRD 314
Query: 318 -KPEAV 322
KPE V
Sbjct: 315 LKPENV 320
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 205 GAMFCLLASSTCHLLCCHSERLSYIMLRLDYAG------IAALISTSFYPPIYYSFMCYP 258
G +F +T L C + R Y G I A + + F + Y+F
Sbjct: 199 GEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT 258
Query: 259 FLCNLYLGFITVLGIATIVISLLPVFE-KPKFRSFRASLFFGMGISGVAPVLHKLILFRD 317
LC + +T++ I + V E P F+ RA + +SG+ + + I++RD
Sbjct: 259 DLCLV----MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRD 314
Query: 318 -KPEAV 322
KPE V
Sbjct: 315 LKPENV 320
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 205 GAMFCLLASSTCHLLCCHSERLSYIMLRLDYAG------IAALISTSFYPPIYYSFMCYP 258
G +F +T L C + R Y G I A + + F + Y+F
Sbjct: 199 GEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT 258
Query: 259 FLCNLYLGFITVLGIATIVISLLPVFE-KPKFRSFRASLFFGMGISGVAPVLHKLILFRD 317
LC + +T++ I + V E P F+ RA + +SG+ + + I++RD
Sbjct: 259 DLCLV----MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRD 314
Query: 318 -KPEAV 322
KPE V
Sbjct: 315 LKPENV 320
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 205 GAMFCLLASSTCHLLCCHSERLSYIMLRLDYAG------IAALISTSFYPPIYYSFMCYP 258
G +F +T L C + R Y G I A + + F + Y+F
Sbjct: 199 GEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKT 258
Query: 259 FLCNLYLGFITVLGIATIVISLLPVFE-KPKFRSFRASLFFGMGISGVAPVLHKLILFRD 317
LC + +T++ I + V E P F+ RA + +SG+ + + I++RD
Sbjct: 259 DLCLV----MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRD 314
Query: 318 -KPEAV 322
KPE V
Sbjct: 315 LKPENV 320
>pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 315
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 184 NKLAPITVQAITRWPIFTFLGGAMFCLLASSTC 216
+ LAPIT+ IT T LGG + CL+A + C
Sbjct: 13 DSLAPITLNTITAA---TRLGGEVSCLVAGTKC 42
>pdb|1T9G|R Chain R, Structure Of The Human Mcad:etf Complex
pdb|2A1T|R Chain R, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1U|A Chain A, Crystal Structure Of The Human Etf E165betaa Mutant
Length = 333
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 184 NKLAPITVQAITRWPIFTFLGGAMFCLLASSTC 216
+ LAPIT+ IT T LGG + CL+A + C
Sbjct: 31 DSLAPITLNTITAA---TRLGGEVSCLVAGTKC 60
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
Length = 514
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 171 LTSLSACLKDDVVNKLAP------ITVQAITRWP--------IFTFLGGAMFCLLASSTC 216
+ SL+ C D + L P +T++AI W I FLGG + +L + TC
Sbjct: 198 IRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTC 257
Query: 217 HL 218
L
Sbjct: 258 QL 259
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With
3'- Datp And Magnesium Chloride
Length = 514
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 171 LTSLSACLKDDVVNKLAP------ITVQAITRWP--------IFTFLGGAMFCLLASSTC 216
+ SL+ C D + L P +T++AI W I FLGG + +L + TC
Sbjct: 198 IRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTC 257
Query: 217 HL 218
L
Sbjct: 258 QL 259
>pdb|3O0R|B Chain B, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 465
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 197 WPIFTFLGGAMFCLLASSTCHLLCCHSERLSYIM---------------LRLDYAGIAAL 241
W +F F+G A + + S C L +S +L++I+ L + YAG+A L
Sbjct: 67 WLLFGFMGAAYYLVPEESDCEL---YSPKLAWILFWVFAAAGVLTILGYLLVPYAGLARL 123
Query: 242 ISTSFYPPIYYSFMCYPFLCN-----LYLGFITVLGIATI 276
+P + F+ P + + LGF+ +G+ +
Sbjct: 124 TGNELWPTMGREFLEQPTISKAGIVIVALGFLFNVGMTVL 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,101,505
Number of Sequences: 62578
Number of extensions: 429218
Number of successful extensions: 838
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 11
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)