Query 016259
Match_columns 392
No_of_seqs 190 out of 1378
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_C Retinoblastoma-associat 12.2 70 0.0024 21.5 0.9 9 7-15 19-27 (46)
2 1mkc_A Protein (midkine); hepa 10.3 91 0.0031 21.0 0.9 10 21-30 6-15 (43)
3 2k8f_B Cellular tumor antigen 8.0 1.4E+02 0.0048 19.2 1.1 13 11-23 1-13 (39)
4 1q8d_A GDNF family receptor al 6.1 1.5E+02 0.0051 23.9 0.6 27 3-29 54-80 (108)
5 1p4q_A CBP/P300-interacting tr 6.0 1.9E+02 0.0065 19.9 1.0 18 45-62 28-46 (52)
6 2v0f_A Chromodomain-helicase-D 5.8 1.3E+02 0.0044 23.3 0.0 14 50-63 38-51 (87)
7 1b8i_A Ultrabithorax, protein 4.1 1.1E+02 0.0037 22.7 -1.4 34 52-91 34-67 (81)
8 2ckc_A Chromodomain-helicase-D 4.0 83 0.0029 23.9 -2.0 13 51-63 47-59 (80)
9 1ews_A RK-1 defensin, alpha-de 3.8 2.4E+02 0.0082 17.1 0.2 10 19-28 8-17 (32)
10 3bcy_A Protein YER067W; mixed 3.6 2.4E+02 0.0083 23.9 0.2 11 7-17 62-72 (155)
No 1
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=12.19 E-value=70 Score=21.48 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=7.8
Q ss_pred hhhhhhccC
Q 016259 7 KIKQMMNSH 15 (392)
Q Consensus 7 ~~~~~~~~~ 15 (392)
||.||.||-
T Consensus 19 KINqMvnss 27 (46)
T 2aze_C 19 KINQMVCNS 27 (46)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhh
Confidence 899999973
No 2
>1mkc_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.2
Probab=10.26 E-value=91 Score=20.98 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=7.8
Q ss_pred CCcccccccc
Q 016259 21 DPWETCDLLD 30 (392)
Q Consensus 21 ~~~~~~~~~~ 30 (392)
.+|++||...
T Consensus 6 ~~W~eCD~~T 15 (43)
T 1mkc_A 6 ENWGACDGGT 15 (43)
T ss_dssp CCCCSSCSSS
T ss_pred cccccccCCC
Confidence 5899998743
No 3
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=7.99 E-value=1.4e+02 Score=19.16 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=9.3
Q ss_pred hhccCCCCCCCCc
Q 016259 11 MMNSHSESSVDPW 23 (392)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (392)
||.+.||-+++|-
T Consensus 1 mme~qsd~siepP 13 (39)
T 2k8f_B 1 MEEPQSDPSVEPP 13 (39)
T ss_dssp CCSSCCCSSCCCC
T ss_pred CCCcccccccCCC
Confidence 6677777777773
No 4
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=6.13 E-value=1.5e+02 Score=23.87 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=13.2
Q ss_pred cchhhhhhhhccCCCCCCCCccccccc
Q 016259 3 MIGFKIKQMMNSHSESSVDPWETCDLL 29 (392)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (392)
+||..|.----+-+..+|.||=+|..-
T Consensus 54 LiGt~mTPNYvdn~s~sVspWC~C~~S 80 (108)
T 1q8d_A 54 LIGTVMTPNYVDSSSLSVAPWCDCSNS 80 (108)
T ss_dssp TTTSTTCCC--------CCCSCBCTTC
T ss_pred ccccccCcccccCCCceeeCCcccCCC
Confidence 456555443334455899999999873
No 5
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=6.01 E-value=1.9e+02 Score=19.89 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=12.9
Q ss_pred ceeeeccCCCc-ccccCCc
Q 016259 45 WHLVEYQKLPL-YLRDNEY 62 (392)
Q Consensus 45 ~~l~~~~elP~-~~~dN~y 62 (392)
..|=+.+|+|+ |+-.|++
T Consensus 28 LGLdRv~ELPEL~LgqnEf 46 (52)
T 1p4q_A 28 MGLDRIKELPELWLGQNEF 46 (52)
T ss_dssp HTSSSCSSCCCCCSCCSTT
T ss_pred HhhHHHHHhHHHHhCcchh
Confidence 45567889998 5666765
No 6
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=5.77 E-value=1.3e+02 Score=23.34 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.9
Q ss_pred ccCCCcccccCCcc
Q 016259 50 YQKLPLYLRDNEYI 63 (392)
Q Consensus 50 ~~elP~~~~dN~yI 63 (392)
..+|+.|+++||-.
T Consensus 38 l~~L~~WL~~nP~y 51 (87)
T 2v0f_A 38 MKDLPRWLEENPEF 51 (87)
T ss_dssp GGGHHHHHHHCTTE
T ss_pred hHHHHHHHHHCCCc
Confidence 45777899999865
No 7
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=4.14 E-value=1.1e+02 Score=22.72 Aligned_cols=34 Identities=15% Similarity=0.392 Sum_probs=18.9
Q ss_pred CCCcccccCCcccccccCCCCHHHHHHHHHHHhhhhHHHH
Q 016259 52 KLPLYLRDNEYIVGYYRSEWPLKQILLSIFSIHNETLNVW 91 (392)
Q Consensus 52 elP~~~~dN~yI~tGYR~~~s~~~cl~SlF~~HNETvNIW 91 (392)
+|-..+..|+|.... -++-+..-..+.-..|.||
T Consensus 34 ~Le~~F~~~~yp~~~------~r~~LA~~l~l~~~qV~vW 67 (81)
T 1b8i_A 34 ELEKEFHTNHYLTRR------RRIEMAHALSLTERQIKIW 67 (81)
T ss_dssp HHHHHHHHCSSCCHH------HHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhcCCCCCHH------HHHHHHHHhCCCHHHHHHH
Confidence 445567777664322 2444555555666666666
No 8
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=4.05 E-value=83 Score=23.87 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=9.7
Q ss_pred cCCCcccccCCcc
Q 016259 51 QKLPLYLRDNEYI 63 (392)
Q Consensus 51 ~elP~~~~dN~yI 63 (392)
.+|++|||+||=.
T Consensus 47 KdL~dWLrqhP~y 59 (80)
T 2ckc_A 47 KDLVEWLKLHPTY 59 (80)
T ss_dssp HHHHHHHHHCTTE
T ss_pred cCHHHHHHHCCCc
Confidence 4677899998644
No 9
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=3.76 E-value=2.4e+02 Score=17.07 Aligned_cols=10 Identities=50% Similarity=0.913 Sum_probs=7.0
Q ss_pred CCCCcccccc
Q 016259 19 SVDPWETCDL 28 (392)
Q Consensus 19 ~~~~~~~~~~ 28 (392)
--||||.-|-
T Consensus 8 ycdpwevidg 17 (32)
T 1ews_A 8 YCDPWEVIDG 17 (32)
T ss_dssp SCCTTEEEEE
T ss_pred ccChhheecc
Confidence 4689987654
No 10
>3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=3.62 E-value=2.4e+02 Score=23.86 Aligned_cols=11 Identities=55% Similarity=0.673 Sum_probs=8.3
Q ss_pred hhhhhhccCCC
Q 016259 7 KIKQMMNSHSE 17 (392)
Q Consensus 7 ~~~~~~~~~~~ 17 (392)
|||.-|||||.
T Consensus 62 KIKpt~Ns~sk 72 (155)
T 3bcy_A 62 KISDAANSHSK 72 (155)
T ss_dssp GSCTTCSTTCH
T ss_pred HcCcccccccH
Confidence 67788888774
Done!