Query 016259
Match_columns 392
No_of_seqs 190 out of 1378
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 10:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lr7a1 g.3.11.3 (A:64-88) Dom 87.7 0.085 6.2E-06 29.7 1.0 22 24-45 1-22 (26)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 16.0 56 0.004 17.9 2.5 16 329-344 2-17 (27)
3 d1tdja2 d.58.18.2 (A:336-423) 14.3 16 0.0012 26.5 -0.2 13 341-355 5-17 (88)
4 d1mkca_ g.5.1.2 (A:) Midkine, 8.4 56 0.0041 20.3 0.9 13 21-33 6-18 (43)
5 d1abaa_ c.47.1.1 (A:) Glutared 8.4 32 0.0023 24.2 -0.3 18 49-67 61-79 (87)
6 d1tdja3 d.58.18.2 (A:424-514) 8.3 27 0.002 25.4 -0.8 13 341-355 12-24 (91)
7 d2heyr2 g.24.1.1 (R:143-166) T 6.7 73 0.0053 17.1 0.7 12 22-33 1-12 (26)
8 d2ckca1 d.76.2.1 (A:2563-2622) 6.2 22 0.0016 24.0 -2.1 14 50-63 26-39 (60)
9 d1ik7a_ a.77.1.2 (A:) Pelle de 5.4 1.4E+02 0.01 19.2 1.7 27 356-382 11-39 (52)
10 d2v0fa1 d.76.2.1 (A:2629-2715) 5.0 73 0.0053 22.8 0.1 27 49-79 37-63 (87)
No 1
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=87.66 E-value=0.085 Score=29.69 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=16.2
Q ss_pred ccccccccccchhhhhcccccc
Q 016259 24 ETCDLLDCKEGKAKKNWKKAKW 45 (392)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~ 45 (392)
||||+.||+.+|+-|..++.++
T Consensus 1 etcdnvdcgpgk~c~mnrrnkp 22 (26)
T d1lr7a1 1 ETCENVDCGPGKKCRMNKKNKP 22 (26)
T ss_dssp CCSTTCCCCTTEEEEECTTSCE
T ss_pred CcccccccCCCccccccccCCC
Confidence 7999999999776665554443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.97 E-value=56 Score=17.90 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 016259 329 ILMGLFYGFGALIYAM 344 (392)
Q Consensus 329 ~~~~~~Y~~G~~fYa~ 344 (392)
+++.++-.+|+.||+.
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4555666777778774
No 3
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.32 E-value=16 Score=26.48 Aligned_cols=13 Identities=38% Similarity=0.881 Sum_probs=10.3
Q ss_pred HhhhcCCccCCCCcc
Q 016259 341 IYAMRVPERWKPGKF 355 (392)
Q Consensus 341 fYa~r~PER~~PG~F 355 (392)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 467789998 9975
No 4
>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}
Probab=8.44 E-value=56 Score=20.28 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=9.2
Q ss_pred CCccccccccccc
Q 016259 21 DPWETCDLLDCKE 33 (392)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (392)
..|++||...-.+
T Consensus 6 ~~WG~CD~~Tg~K 18 (43)
T d1mkca_ 6 ENWGACDGGTGTK 18 (43)
T ss_dssp CCCCSSCSSSSSC
T ss_pred cccccccccCCcc
Confidence 5799999854433
No 5
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}
Probab=8.40 E-value=32 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=12.8
Q ss_pred eccCCCcccc-cCCcccccc
Q 016259 49 EYQKLPLYLR-DNEYIVGYY 67 (392)
Q Consensus 49 ~~~elP~~~~-dN~yI~tGY 67 (392)
....+|.-+. |.++| .||
T Consensus 61 ~~~TvPqIfi~dg~~I-GG~ 79 (87)
T d1abaa_ 61 IGLTMPQVFAPDGSHI-GGF 79 (87)
T ss_dssp TTCCSCEEECTTSCEE-ESH
T ss_pred CCceeCeEEecCCcEE-ECH
Confidence 4557898886 55777 776
No 6
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.27 E-value=27 Score=25.35 Aligned_cols=13 Identities=38% Similarity=1.040 Sum_probs=9.8
Q ss_pred HhhhcCCccCCCCcc
Q 016259 341 IYAMRVPERWKPGKF 355 (392)
Q Consensus 341 fYa~r~PER~~PG~F 355 (392)
+|+..+||| ||.|
T Consensus 12 l~~v~iPEr--pGal 24 (91)
T d1tdja3 12 LYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEECCCC--TTHH
T ss_pred EEEEECCCC--ccHH
Confidence 567789998 8843
No 7
>d2heyr2 g.24.1.1 (R:143-166) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.65 E-value=73 Score=17.11 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=8.9
Q ss_pred Cccccccccccc
Q 016259 22 PWETCDLLDCKE 33 (392)
Q Consensus 22 ~~~~~~~~~~~~ 33 (392)
||..|.+++...
T Consensus 1 pwtnctlagkht 12 (26)
T d2heyr2 1 PWTNCTLAGKHT 12 (26)
T ss_dssp ECCCTTTTTCCC
T ss_pred Ccccceeccccc
Confidence 788998876543
No 8
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.19 E-value=22 Score=24.02 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=10.6
Q ss_pred ccCCCcccccCCcc
Q 016259 50 YQKLPLYLRDNEYI 63 (392)
Q Consensus 50 ~~elP~~~~dN~yI 63 (392)
.++|..||++||=.
T Consensus 26 ~~~L~~WL~~hP~y 39 (60)
T d2ckca1 26 NKDLVEWLKLHPTY 39 (60)
T ss_dssp HHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHCCCc
Confidence 35777899999854
No 9
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=5.41 E-value=1.4e+02 Score=19.16 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=23.1
Q ss_pred ccCCC--chhHHHHHHHHHHHHHHHHHHH
Q 016259 356 DIAGH--SHQLFHVLVVAGAYTHYLDGLV 382 (392)
Q Consensus 356 D~~G~--SHqIwHi~Vvlaa~~h~~ai~~ 382 (392)
++||+ .|.|--+|+++.-.-|+.|+..
T Consensus 11 ~~Wg~q~NHTi~eLF~ll~~mk~~~aM~i 39 (52)
T d1ik7a_ 11 NIWGGQYNHTVQTLFALFKKLKLHNAMRL 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 45665 7999999999999999999874
No 10
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.01 E-value=73 Score=22.84 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=16.8
Q ss_pred eccCCCcccccCCcccccccCCCCHHHHHHH
Q 016259 49 EYQKLPLYLRDNEYIVGYYRSEWPLKQILLS 79 (392)
Q Consensus 49 ~~~elP~~~~dN~yI~tGYR~~~s~~~cl~S 79 (392)
..++|..||++|| +|=..-.+.+|.++
T Consensus 37 ~~~~L~~WL~~nP----~y~V~P~w~~~vk~ 63 (87)
T d2v0fa1 37 PMKDLPRWLEENP----EFAVAPDWTDIVKQ 63 (87)
T ss_dssp BGGGHHHHHHHCT----TEEECHHHHHHHHH
T ss_pred cHHHHHHHHHHCC----CceeCccHHHHHhh
Confidence 3457889999986 34443335566653
Done!