BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016260
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386
C +CLE++K D++G + C H +H C+ KWL ++ VCP+C V+
Sbjct: 18 CAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386
M + C +CL E ++ ++ L CGH +H C+ WL + CP+C+ +V+
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383
+ E+ CV+C+ ++++ + L C H++H C+ KWL CPIC+A
Sbjct: 18 NHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEKE 392
C ICL + +DV L C H +H C+ +WL CPIC+ + A E
Sbjct: 17 CTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 329 CSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382
C+ ++Q C+ C E K D V C H +H C+ W+ N CP+C+
Sbjct: 18 CAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383
+E C IC EY DV T C H +H C+ WL CP+C+
Sbjct: 39 QEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387
C +C E+Y + V L C H +H +CI WL + CP+C+ S+
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
C IC E Y N+ + + C H+Y CI+K+LS K CP C +V
Sbjct: 25 CGICFE-YFNIAMI--IPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389
D ++ E C+IC E + + TL +C H + CI +W+ K CPIC+ + + +
Sbjct: 59 DVLENELQCIICSEYF---IEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389
D ++ E C+IC E + + TL +C H + CI +W+ K CPIC+ + + +
Sbjct: 48 DVLENELQCIICSEYF---IEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389
D ++ E C+IC E + + TL +C H + CI +W+ K CPIC+ + + +
Sbjct: 48 DVLENELQCIICSEYF---IEAVTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.040, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
C ICLE+ N C H + CI +W+ CP+CK V
Sbjct: 8 CPICLEDPSNYS---MALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW---LSMKNVCPIC 381
+ +Q E +C +CLE K + CGH++ CI +W L CP+C
Sbjct: 10 ENLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.0 bits (79), Expect = 0.074, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.080, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 339 NCVICLEEYKNMDDVGTL---KSCGHDYHVTCIKKWLSMKNVCPICKASV 385
+C IC++ Y + G L CGH + C++ L N CP C+ +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.7 bits (78), Expect = 0.087, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 339 NCVICLEEYKNMDDVGTL---KSCGHDYHVTCIKKWLSMKNVCPICKASV 385
+C IC++ Y + G L CGH + C++ L N CP C+ +
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 333 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 390
Q+ +E C IC++ ++ + C H + CI KW CPIC+ + +E
Sbjct: 11 QLTDEEECCICMDGRADL-----ILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 34.7 bits (78), Expect = 0.100, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
CV+C + D T+ C H + TCI ++L CPIC V
Sbjct: 18 CVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 34.7 bits (78), Expect = 0.100, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
CV+C + D T+ C H + TCI ++L CPIC V
Sbjct: 18 CVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 34.7 bits (78), Expect = 0.100, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
CV+C + D T+ C H + TCI ++L CPIC V
Sbjct: 14 CVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 339 NCVICLEEYKNMDDVGTL---KSCGHDYHVTCIKKWLSMKNVCPICKASV 385
+C IC++ Y + G L CGH + C++ L N CP C+ +
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 359 CGHDYHVTCIKKWLSMKNVCPI 380
C H +H CI +WL + VCP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 384
+ NC ICLE+ V + CGH H TC ++ L CP+C S
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
Length = 463
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 127 IEGGGLVDLTMANG----RGPHKRKSPGVPSVCDRGSTSRYYGAGSSSDIPIPSE 177
++ GG +LTMANG +G R+ VPS D T+ Y ++ +I IP +
Sbjct: 155 VQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEK 209
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383
C ICLE+ V + CGH H TC ++ L CP+C
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 19/66 (28%)
Query: 337 EGNCVICLEE------YKNMDD--------VGTLKSCGHDYHVTCIKKWLSMKNV----- 377
E +C+IC+E+ Y +M D VG L C H +H+ C+ N
Sbjct: 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQ 84
Query: 378 CPICKA 383
CP CK
Sbjct: 85 CPSCKT 90
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 333 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
+++E C++C EE N T CGH C + + CP+C++ V
Sbjct: 14 KLKEAMLCMVCCEEEIN----STFCPCGH---TVCCESCAAQLQSCPVCRSRV 59
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 326 SIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385
S+ ++QEE C +CL+ ++ CGH C +CPIC+A V
Sbjct: 2 SVEAQLRRLQEERTCKVCLDRAVSI----VFVPCGHLVCAECAPGL----QLCPICRAPV 53
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 340 CVICLEEYKNMDDVGTL---KSCGHDYHVTCIKKWLSMKNVCPICKASV 385
C IC++ Y + G L CGH + C++ L N CP C+ +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 340 CVICLEEYKNMDDVGTL---KSCGHDYHVTCIKKWLSMKNVCPICKASV 385
C IC++ Y + G L CGH + C++ L N CP C+ +
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL--SMKNV-CPIC 381
D ++E C IC+E + L CGH C++K L S+ V CP C
Sbjct: 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3MEL|A Chain A, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
pdb|3MEL|B Chain B, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
pdb|3MEL|C Chain C, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
pdb|3MEL|D Chain D, Crystal Structure Of Thiamin Pyrophosphokinase Family
Protei Enterococcus Faecalis, Northeast Structural
Genomics Consor Target Efr150
Length = 222
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 130 GGLVDLTMANGRGPHKRKSPGV---PSVCDRGSTSRYYGAGSSSDIPIPSEPWQE 181
GG +D +AN P + + GV +CDR ++ +YY GS +P EP +E
Sbjct: 103 GGRIDHLLANLWLPFEPRFQGVLRQIRLCDRQNSIQYYAPGSYI---VPKEPDKE 154
>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|E Chain E, Molecular Mechanism Of Guidance Cue Recognition
Length = 590
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 175 PSEPWQEKPNIDSQHMPWDRVSMAPNYR 202
P+EP +E PN P +VS+APN R
Sbjct: 490 PAEPHKECPNPKPDKAPLQKVSLAPNSR 517
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL--SMKNVCPIC 381
D + +E C+IC + M D + CG+ Y CI+ L S ++ CP C
Sbjct: 8 DPIPDELLCLICKDI---MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 242 SRMSNERYRSLSDEPSLHERFSSEGFMIVDR-SPLYG-----SRGMLDQHRDMRLDIDNM 295
SRM N + R L P + E+ + G ++ + P++G S G +H D +D
Sbjct: 338 SRMGNHKVRDLL--PPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQG 395
Query: 296 TYEELLALGERIGSVSTGLSEDLISRCL 323
+E ALG G + ++ + ++ CL
Sbjct: 396 FFEVHRALGTHPGGIHVEITGENVTECL 423
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 242 SRMSNERYRSLSDEPSLHERFSSEGFMIVDR-SPLYG-----SRGMLDQHRDMRLDIDNM 295
SRM N + R L P + E+ + G ++ + P++G S G +H D +D
Sbjct: 336 SRMGNHKVRDLL--PPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQG 393
Query: 296 TYEELLALGERIGSVSTGLSEDLISRCL 323
+E ALG G + ++ + ++ CL
Sbjct: 394 FFEVHRALGTHPGGIHVEITGENVTECL 421
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 242 SRMSNERYRSLSDEPSLHERFSSEGFMIVDR-SPLYG-----SRGMLDQHRDMRLDIDNM 295
SRM N + R L P + E+ + G ++ + P++G S G +H D +D
Sbjct: 346 SRMGNHKVRDLL--PPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQG 403
Query: 296 TYEELLALGERIGSVSTGLSEDLISRCL 323
+E ALG G + ++ + ++ CL
Sbjct: 404 FFEVHRALGTHPGGIHVEITGENVTECL 431
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 150 GVPSVCDRGSTSRYYGAGSSSDIPIPSEPWQEKPNIDSQHMPWDRVSMAPNYRSSALSIR 209
GV V G+ + +Y + ++ P ++PW K + + D+ + +S AL+
Sbjct: 15 GVVGVPFAGALTSFYQSFLNTIWPSDADPW--KAFMAQVEVLIDK-KIEEYAKSKALA-E 70
Query: 210 SEGMQLVAESYSSRHSRPLSAIAWRHSDRSGRSRMSNERYRSLSDEPSLHERFSSEGFMI 269
+G+Q E Y + + +W+ + S RS+ S +R R L + H R S F +
Sbjct: 71 LQGLQNNFEDYVNALN------SWKKTPLSLRSKRSQDRIRELFSQAESHFRNSMPSFAV 124
Query: 270 VDRSPLY 276
L+
Sbjct: 125 SKFEVLF 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,021,749
Number of Sequences: 62578
Number of extensions: 576579
Number of successful extensions: 1244
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 55
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)