Query 016260
Match_columns 392
No_of_seqs 275 out of 1775
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:15:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 1.4E-14 3E-19 145.2 5.7 76 312-389 205-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 6.8E-14 1.5E-18 100.3 2.1 44 338-382 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.2 9.8E-12 2.1E-16 119.5 4.6 76 311-386 147-227 (238)
4 COG5540 RING-finger-containing 99.2 1.3E-11 2.7E-16 121.4 3.6 52 336-388 322-374 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 2.1E-11 4.5E-16 97.2 3.7 47 336-382 18-73 (73)
6 KOG0317 Predicted E3 ubiquitin 99.0 1.7E-10 3.6E-15 112.8 4.0 52 334-389 236-287 (293)
7 COG5243 HRD1 HRD ubiquitin lig 98.9 4.9E-10 1.1E-14 112.8 3.8 52 334-386 284-345 (491)
8 PLN03208 E3 ubiquitin-protein 98.9 1.1E-09 2.4E-14 102.3 4.1 50 335-388 16-81 (193)
9 KOG0823 Predicted E3 ubiquitin 98.9 7.9E-10 1.7E-14 105.3 3.0 52 334-389 44-98 (230)
10 cd00162 RING RING-finger (Real 98.9 1.5E-09 3.3E-14 75.1 3.3 44 339-385 1-45 (45)
11 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.6E-09 3.4E-14 79.8 2.6 46 337-386 2-48 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 98.8 4E-09 8.6E-14 74.0 3.0 39 340-381 1-39 (39)
13 PF12861 zf-Apc11: Anaphase-pr 98.8 4.5E-09 9.8E-14 86.6 3.6 51 336-386 20-82 (85)
14 KOG0320 Predicted E3 ubiquitin 98.8 4.3E-09 9.3E-14 97.0 3.0 51 335-387 129-179 (187)
15 PHA02926 zinc finger-like prot 98.7 5.4E-09 1.2E-13 99.5 3.3 51 335-385 168-229 (242)
16 KOG0802 E3 ubiquitin ligase [P 98.7 5.1E-09 1.1E-13 111.0 2.4 50 336-386 290-341 (543)
17 smart00504 Ubox Modified RING 98.7 1.8E-08 3.9E-13 76.3 3.8 48 338-389 2-49 (63)
18 PF14634 zf-RING_5: zinc-RING 98.6 3E-08 6.6E-13 71.4 2.9 44 339-383 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.5 4.1E-08 8.8E-13 68.9 2.3 39 340-381 1-41 (41)
20 PF15227 zf-C3HC4_4: zinc fing 98.5 4.2E-08 9.1E-13 70.5 2.3 38 340-381 1-42 (42)
21 TIGR00599 rad18 DNA repair pro 98.5 5.7E-08 1.2E-12 99.8 3.9 51 334-388 23-73 (397)
22 smart00184 RING Ring finger. E 98.5 1.1E-07 2.3E-12 63.5 3.2 38 340-381 1-39 (39)
23 COG5194 APC11 Component of SCF 98.5 7.6E-08 1.7E-12 78.4 2.6 35 352-386 47-81 (88)
24 PF13445 zf-RING_UBOX: RING-ty 98.3 4.9E-07 1.1E-11 65.7 2.4 35 340-375 1-35 (43)
25 COG5574 PEX10 RING-finger-cont 98.3 4.3E-07 9.2E-12 88.3 2.8 51 335-389 213-265 (271)
26 KOG1493 Anaphase-promoting com 98.3 2.5E-07 5.5E-12 74.8 0.8 52 335-386 18-81 (84)
27 KOG2164 Predicted E3 ubiquitin 98.2 5.1E-07 1.1E-11 94.3 2.8 49 337-389 186-239 (513)
28 KOG0828 Predicted E3 ubiquitin 98.2 5.3E-07 1.2E-11 93.8 2.5 52 336-387 570-635 (636)
29 KOG0287 Postreplication repair 98.1 5.8E-07 1.3E-11 90.1 0.8 51 336-390 22-72 (442)
30 smart00744 RINGv The RING-vari 98.1 2.2E-06 4.7E-11 63.7 3.2 42 339-382 1-49 (49)
31 KOG2177 Predicted E3 ubiquitin 98.1 1.5E-06 3.2E-11 79.6 1.7 45 335-383 11-55 (386)
32 PF04564 U-box: U-box domain; 98.0 2E-06 4.3E-11 68.4 2.0 48 337-388 4-52 (73)
33 KOG2930 SCF ubiquitin ligase, 98.0 3.7E-06 8E-11 71.7 2.6 49 336-384 45-106 (114)
34 KOG4265 Predicted E3 ubiquitin 97.9 5E-06 1.1E-10 83.8 3.0 47 336-386 289-336 (349)
35 COG5219 Uncharacterized conser 97.9 2.2E-06 4.7E-11 94.7 0.2 54 333-386 1465-1523(1525)
36 PF11793 FANCL_C: FANCL C-term 97.9 2.8E-06 6E-11 67.5 0.2 50 337-386 2-66 (70)
37 KOG1734 Predicted RING-contain 97.9 3.5E-06 7.7E-11 82.4 0.8 52 334-386 221-281 (328)
38 COG5432 RAD18 RING-finger-cont 97.9 5.5E-06 1.2E-10 81.8 1.9 46 337-386 25-70 (391)
39 KOG0311 Predicted E3 ubiquitin 97.8 2.9E-06 6.3E-11 85.5 -1.6 51 335-388 41-92 (381)
40 KOG4445 Uncharacterized conser 97.7 1E-05 2.2E-10 80.2 1.2 55 334-389 112-189 (368)
41 KOG1039 Predicted E3 ubiquitin 97.7 1.5E-05 3.3E-10 80.7 2.2 51 335-385 159-220 (344)
42 KOG0804 Cytoplasmic Zn-finger 97.5 3.9E-05 8.5E-10 79.5 1.8 50 335-386 173-222 (493)
43 KOG0825 PHD Zn-finger protein 97.5 2.2E-05 4.8E-10 85.6 -0.7 50 336-386 122-171 (1134)
44 KOG4172 Predicted E3 ubiquitin 97.4 6.4E-05 1.4E-09 57.6 1.0 46 337-386 7-54 (62)
45 PF14835 zf-RING_6: zf-RING of 97.3 5.8E-05 1.3E-09 59.5 0.5 51 336-391 6-56 (65)
46 KOG0978 E3 ubiquitin ligase in 97.1 0.0004 8.8E-09 75.9 4.0 51 336-390 642-693 (698)
47 KOG1785 Tyrosine kinase negati 96.9 0.00036 7.7E-09 71.8 1.5 47 338-388 370-418 (563)
48 KOG3970 Predicted E3 ubiquitin 96.9 0.00055 1.2E-08 65.9 2.1 54 334-389 47-108 (299)
49 KOG4159 Predicted E3 ubiquitin 96.8 0.00073 1.6E-08 69.9 2.8 49 335-387 82-130 (398)
50 KOG0297 TNF receptor-associate 96.7 0.0008 1.7E-08 69.3 2.2 53 334-389 18-70 (391)
51 PF11789 zf-Nse: Zinc-finger o 96.7 0.0013 2.8E-08 50.5 2.5 42 336-380 10-53 (57)
52 KOG0801 Predicted E3 ubiquitin 96.4 0.0011 2.4E-08 61.0 1.1 31 334-365 174-204 (205)
53 KOG2660 Locus-specific chromos 96.4 0.00086 1.9E-08 67.4 0.0 49 335-386 13-61 (331)
54 KOG2879 Predicted E3 ubiquitin 96.2 0.0036 7.7E-08 61.9 3.3 52 332-386 234-287 (298)
55 KOG4275 Predicted E3 ubiquitin 96.2 0.0016 3.4E-08 64.8 0.5 90 289-386 246-342 (350)
56 KOG4692 Predicted E3 ubiquitin 96.2 0.0038 8.3E-08 63.6 3.2 49 335-387 420-468 (489)
57 KOG3039 Uncharacterized conser 96.1 0.0047 1E-07 60.3 3.5 53 337-389 221-273 (303)
58 KOG1941 Acetylcholine receptor 96.1 0.002 4.3E-08 66.3 1.0 47 337-383 365-413 (518)
59 PF05883 Baculo_RING: Baculovi 95.7 0.0043 9.4E-08 55.4 1.2 36 337-373 26-67 (134)
60 KOG1952 Transcription factor N 95.6 0.0065 1.4E-07 67.5 2.1 49 336-384 190-245 (950)
61 PHA02862 5L protein; Provision 95.5 0.01 2.2E-07 53.8 3.0 45 337-386 2-53 (156)
62 COG5152 Uncharacterized conser 95.5 0.0054 1.2E-07 58.3 1.1 43 338-384 197-239 (259)
63 KOG1428 Inhibitor of type V ad 95.5 0.0096 2.1E-07 69.2 3.2 50 336-386 3485-3544(3738)
64 PF12906 RINGv: RING-variant d 95.4 0.0095 2.1E-07 43.9 1.9 40 340-381 1-47 (47)
65 PHA02825 LAP/PHD finger-like p 95.4 0.014 3.1E-07 53.5 3.3 48 334-386 5-59 (162)
66 KOG1814 Predicted E3 ubiquitin 95.1 0.011 2.3E-07 61.3 2.0 46 337-383 184-237 (445)
67 KOG1571 Predicted E3 ubiquitin 95.1 0.012 2.6E-07 59.9 2.2 44 336-386 304-347 (355)
68 PHA03096 p28-like protein; Pro 95.0 0.012 2.5E-07 58.7 1.8 37 338-374 179-219 (284)
69 KOG1002 Nucleotide excision re 94.9 0.011 2.4E-07 62.9 1.5 51 334-388 533-588 (791)
70 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.028 6.1E-07 54.8 3.7 53 335-388 111-163 (260)
71 KOG1813 Predicted E3 ubiquitin 94.7 0.012 2.6E-07 58.7 1.0 44 338-385 242-285 (313)
72 PF14570 zf-RING_4: RING/Ubox 94.6 0.023 5.1E-07 42.4 2.0 44 340-384 1-46 (48)
73 PF10367 Vps39_2: Vacuolar sor 94.5 0.017 3.6E-07 47.6 1.2 34 334-369 75-108 (109)
74 COG5236 Uncharacterized conser 94.0 0.038 8.3E-07 56.4 2.9 49 332-384 56-106 (493)
75 KOG0826 Predicted E3 ubiquitin 94.0 0.044 9.6E-07 55.5 3.3 48 335-385 298-345 (357)
76 KOG1645 RING-finger-containing 93.9 0.036 7.8E-07 57.5 2.5 32 355-386 23-56 (463)
77 KOG0827 Predicted E3 ubiquitin 93.9 0.0041 8.8E-08 64.0 -4.4 50 337-387 196-246 (465)
78 KOG1940 Zn-finger protein [Gen 93.8 0.029 6.3E-07 55.7 1.6 46 338-383 159-204 (276)
79 COG5175 MOT2 Transcriptional r 92.7 0.073 1.6E-06 54.3 2.5 53 336-388 13-66 (480)
80 COG5222 Uncharacterized conser 92.7 0.067 1.5E-06 53.8 2.1 46 338-386 275-322 (427)
81 KOG2114 Vacuolar assembly/sort 92.4 0.069 1.5E-06 59.7 2.1 44 336-385 839-882 (933)
82 KOG1001 Helicase-like transcri 92.0 0.062 1.4E-06 59.3 1.1 45 338-387 455-501 (674)
83 PF03854 zf-P11: P-11 zinc fin 91.8 0.062 1.4E-06 40.3 0.5 31 358-388 17-48 (50)
84 PF08746 zf-RING-like: RING-li 91.7 0.081 1.8E-06 38.3 1.1 41 340-381 1-43 (43)
85 PF10272 Tmpp129: Putative tra 91.6 0.21 4.5E-06 51.4 4.3 29 359-387 311-352 (358)
86 PF14447 Prok-RING_4: Prokaryo 91.6 0.11 2.3E-06 40.0 1.6 46 338-389 8-53 (55)
87 KOG1609 Protein involved in mR 91.3 0.13 2.8E-06 50.0 2.4 51 337-387 78-135 (323)
88 KOG2932 E3 ubiquitin ligase in 91.3 0.09 2E-06 53.1 1.3 43 338-385 91-133 (389)
89 KOG0298 DEAD box-containing he 90.3 0.083 1.8E-06 61.3 -0.0 45 337-384 1153-1197(1394)
90 KOG3002 Zn finger protein [Gen 90.2 0.16 3.4E-06 51.1 1.9 44 335-386 46-91 (299)
91 KOG3268 Predicted E3 ubiquitin 90.2 0.19 4E-06 47.4 2.2 52 336-387 164-229 (234)
92 KOG4362 Transcriptional regula 89.4 0.1 2.3E-06 57.4 -0.1 53 335-391 19-74 (684)
93 KOG3161 Predicted E3 ubiquitin 89.2 0.12 2.5E-06 56.5 0.1 44 337-383 11-54 (861)
94 COG5220 TFB3 Cdk activating ki 87.6 0.32 6.9E-06 47.8 1.9 48 336-383 9-61 (314)
95 PF14446 Prok-RING_1: Prokaryo 86.7 0.68 1.5E-05 35.6 2.8 43 337-383 5-49 (54)
96 KOG1100 Predicted E3 ubiquitin 86.3 0.34 7.4E-06 46.2 1.3 40 339-386 160-200 (207)
97 KOG3053 Uncharacterized conser 86.1 0.38 8.2E-06 47.6 1.5 49 336-384 19-80 (293)
98 PF07800 DUF1644: Protein of u 86.1 0.69 1.5E-05 42.7 3.1 35 336-373 1-47 (162)
99 KOG0309 Conserved WD40 repeat- 85.3 0.51 1.1E-05 52.6 2.1 25 356-380 1045-1069(1081)
100 KOG0825 PHD Zn-finger protein 84.5 0.57 1.2E-05 52.5 2.1 51 337-387 96-155 (1134)
101 KOG1812 Predicted E3 ubiquitin 84.2 0.43 9.2E-06 49.4 1.0 39 336-375 145-184 (384)
102 KOG2034 Vacuolar sorting prote 83.9 0.46 9.9E-06 53.7 1.1 37 334-372 814-850 (911)
103 KOG3899 Uncharacterized conser 83.4 0.62 1.3E-05 46.9 1.7 29 359-387 325-366 (381)
104 KOG1829 Uncharacterized conser 81.4 0.64 1.4E-05 50.6 1.0 42 337-382 511-557 (580)
105 PF05290 Baculo_IE-1: Baculovi 81.4 1.1 2.4E-05 40.3 2.4 54 336-389 79-135 (140)
106 KOG4185 Predicted E3 ubiquitin 81.3 0.88 1.9E-05 44.6 1.9 35 351-385 19-54 (296)
107 COG5183 SSM4 Protein involved 80.7 1.2 2.5E-05 50.3 2.7 50 335-386 10-66 (1175)
108 KOG0802 E3 ubiquitin ligase [P 74.8 1.5 3.2E-05 47.2 1.4 47 335-389 477-523 (543)
109 KOG0269 WD40 repeat-containing 71.9 3.3 7.1E-05 46.4 3.2 41 338-380 780-820 (839)
110 KOG3842 Adaptor protein Pellin 70.4 4.4 9.5E-05 41.5 3.4 54 334-387 338-415 (429)
111 smart00249 PHD PHD zinc finger 68.2 3 6.5E-05 28.5 1.3 31 339-370 1-31 (47)
112 PF02891 zf-MIZ: MIZ/SP-RING z 67.7 5.4 0.00012 29.7 2.7 43 338-384 3-50 (50)
113 KOG2068 MOT2 transcription fac 67.7 4.1 8.8E-05 41.6 2.6 50 338-387 250-299 (327)
114 KOG2817 Predicted E3 ubiquitin 67.2 4.5 9.8E-05 42.2 2.9 51 337-388 334-387 (394)
115 KOG4718 Non-SMC (structural ma 67.0 2.6 5.6E-05 40.8 1.0 42 338-382 182-223 (235)
116 PF06906 DUF1272: Protein of u 66.9 7.7 0.00017 30.1 3.4 47 338-388 6-54 (57)
117 KOG2066 Vacuolar assembly/sort 66.4 2.2 4.8E-05 47.9 0.5 43 337-381 784-830 (846)
118 KOG1812 Predicted E3 ubiquitin 65.5 6 0.00013 41.1 3.4 43 338-381 307-351 (384)
119 PF13901 DUF4206: Domain of un 65.2 4.3 9.4E-05 38.4 2.1 41 337-383 152-197 (202)
120 KOG2169 Zn-finger transcriptio 61.3 9.2 0.0002 42.3 4.1 89 293-389 258-359 (636)
121 KOG1815 Predicted E3 ubiquitin 60.4 5.2 0.00011 42.0 1.9 37 335-374 68-104 (444)
122 KOG3039 Uncharacterized conser 54.4 9.5 0.00021 37.9 2.4 35 336-374 42-76 (303)
123 KOG4185 Predicted E3 ubiquitin 50.4 3 6.6E-05 40.8 -1.7 48 337-384 207-265 (296)
124 KOG3005 GIY-YIG type nuclease 48.3 9.6 0.00021 38.1 1.4 48 338-385 183-242 (276)
125 PF00412 LIM: LIM domain; Int 48.3 11 0.00024 27.5 1.5 39 340-388 1-39 (58)
126 smart00132 LIM Zinc-binding do 45.7 17 0.00036 23.9 1.9 38 339-386 1-38 (39)
127 PF00628 PHD: PHD-finger; Int 44.8 12 0.00026 26.9 1.2 44 339-383 1-50 (51)
128 KOG3113 Uncharacterized conser 43.8 21 0.00046 35.6 3.0 50 338-389 112-161 (293)
129 PF04710 Pellino: Pellino; In 43.3 7.9 0.00017 40.6 0.0 49 337-386 328-401 (416)
130 KOG0824 Predicted E3 ubiquitin 41.6 9.6 0.00021 38.7 0.3 49 335-386 103-151 (324)
131 KOG3579 Predicted E3 ubiquitin 40.1 14 0.0003 37.5 1.1 36 337-376 268-307 (352)
132 smart00064 FYVE Protein presen 39.5 7.8 0.00017 29.7 -0.6 37 337-373 10-46 (68)
133 PLN02189 cellulose synthase 38.7 24 0.00053 41.2 2.9 50 337-386 34-87 (1040)
134 KOG4577 Transcription factor L 38.3 8.7 0.00019 38.9 -0.6 43 337-389 92-134 (383)
135 PF07975 C1_4: TFIIH C1-like d 37.0 22 0.00048 27.0 1.6 42 340-382 2-50 (51)
136 TIGR00622 ssl1 transcription f 36.5 38 0.00082 29.7 3.1 46 337-382 55-110 (112)
137 PF01363 FYVE: FYVE zinc finge 35.9 19 0.0004 27.7 1.0 39 335-373 7-45 (69)
138 PF06844 DUF1244: Protein of u 34.5 23 0.00049 28.5 1.3 12 362-373 11-22 (68)
139 PF13719 zinc_ribbon_5: zinc-r 34.5 20 0.00043 25.0 0.9 27 338-364 3-36 (37)
140 PF07853 DUF1648: Protein of u 33.1 20 0.00043 26.4 0.8 17 57-73 21-37 (51)
141 COG5109 Uncharacterized conser 32.0 33 0.00072 35.3 2.4 46 337-383 336-384 (396)
142 PRK11827 hypothetical protein; 31.2 18 0.0004 28.3 0.3 19 370-388 3-21 (60)
143 KOG1074 Transcriptional repres 30.6 26 0.00056 40.1 1.5 52 335-386 603-679 (958)
144 KOG2807 RNA polymerase II tran 29.6 44 0.00096 34.5 2.8 47 336-383 329-375 (378)
145 cd00065 FYVE FYVE domain; Zinc 29.5 36 0.00078 24.9 1.7 36 338-373 3-38 (57)
146 COG3813 Uncharacterized protei 29.0 63 0.0014 26.6 3.0 47 340-388 8-54 (84)
147 PLN02436 cellulose synthase A 28.9 44 0.00095 39.4 2.9 50 337-386 36-89 (1094)
148 PF05605 zf-Di19: Drought indu 28.9 21 0.00046 26.5 0.3 38 337-385 2-41 (54)
149 PF14569 zf-UDP: Zinc-binding 28.5 54 0.0012 27.2 2.6 50 336-385 8-61 (80)
150 KOG4430 Topoisomerase I-bindin 27.8 16 0.00035 39.8 -0.7 52 336-387 259-310 (553)
151 KOG2113 Predicted RNA binding 27.6 35 0.00075 35.1 1.7 43 336-384 342-385 (394)
152 PF04423 Rad50_zn_hook: Rad50 27.2 22 0.00047 26.5 0.1 12 376-387 21-32 (54)
153 PF10571 UPF0547: Uncharacteri 26.9 29 0.00064 22.7 0.7 23 339-363 2-24 (26)
154 KOG2041 WD40 repeat protein [G 26.4 23 0.00049 40.2 0.1 46 336-385 1130-1184(1189)
155 PF07649 C1_3: C1-like domain; 26.0 47 0.001 21.8 1.5 29 339-368 2-30 (30)
156 KOG2071 mRNA cleavage and poly 25.9 33 0.00072 37.7 1.2 35 335-371 511-556 (579)
157 KOG1356 Putative transcription 25.6 26 0.00056 40.1 0.4 36 335-372 227-262 (889)
158 KOG3842 Adaptor protein Pellin 24.5 32 0.0007 35.4 0.8 25 355-384 318-350 (429)
159 PF13717 zinc_ribbon_4: zinc-r 24.2 43 0.00094 23.3 1.2 25 339-363 4-35 (36)
160 KOG3726 Uncharacterized conser 23.5 40 0.00086 37.8 1.3 42 338-382 655-696 (717)
161 PF04710 Pellino: Pellino; In 23.4 27 0.00058 36.8 0.0 27 355-384 305-337 (416)
162 KOG1245 Chromatin remodeling c 23.2 30 0.00066 41.8 0.4 51 334-385 1105-1159(1404)
163 PF06750 DiS_P_DiS: Bacterial 23.1 51 0.0011 27.5 1.6 38 337-387 33-70 (92)
164 PLN02638 cellulose synthase A 22.3 75 0.0016 37.5 3.2 50 337-386 17-70 (1079)
165 PF04216 FdhE: Protein involve 21.8 13 0.00028 36.7 -2.6 46 337-383 172-219 (290)
166 KOG1729 FYVE finger containing 21.5 17 0.00036 36.7 -1.9 37 338-375 215-251 (288)
167 KOG4021 Mitochondrial ribosoma 20.9 44 0.00096 32.2 0.9 21 365-385 97-118 (239)
168 KOG4218 Nuclear hormone recept 20.4 35 0.00075 35.6 0.1 14 335-348 13-26 (475)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-14 Score=145.19 Aligned_cols=76 Identities=33% Similarity=0.799 Sum_probs=58.6
Q ss_pred CCCCHHHHHhhcccceeecccccCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCC-CccccccccCCC
Q 016260 312 TGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNV-CPICKASVMADS 389 (392)
Q Consensus 312 tGLSee~I~kll~~~~~~~s~~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kns-CPICR~~l~~~~ 389 (392)
..+.+..+++++..... ...+......|+||||+|+.+|+++.| ||+|.||..||++||..+.+ ||+||+++..+.
T Consensus 205 ~r~~k~~l~~~p~~~f~-~~~~~~~~~~CaIClEdY~~GdklRiL-PC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFT-KGDDEDATDTCAICLEDYEKGDKLRIL-PCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhHHHHHhhCCcEEec-cccccCCCceEEEeecccccCCeeeEe-cCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 45667777776554432 222222225899999999999999998 89999999999999998755 999999887654
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.41 E-value=6.8e-14 Score=100.34 Aligned_cols=44 Identities=48% Similarity=1.199 Sum_probs=39.6
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR 382 (392)
+.|+||+++|..++.+..+ +|+|.||.+||.+||+.+++||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhCCcCCccC
Confidence 3699999999988888888 6999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.20 E-value=9.8e-12 Score=119.51 Aligned_cols=76 Identities=21% Similarity=0.547 Sum_probs=55.1
Q ss_pred CCCCCHHHHHhhcccceeecc-cccCCCCccceecccccCCC----ceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016260 311 STGLSEDLISRCLTESIYCSA-DQMQEEGNCVICLEEYKNMD----DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 311 ~tGLSee~I~kll~~~~~~~s-~~~~ed~~C~ICLEdf~~ge----~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
+.+.+...+..++........ .....+..|+||++.+.+++ .++++++|+|.||..||.+|++.+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 345577777666554322111 12234688999999987653 2456778999999999999999999999999976
Q ss_pred c
Q 016260 386 M 386 (392)
Q Consensus 386 ~ 386 (392)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 4
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.3e-11 Score=121.39 Aligned_cols=52 Identities=33% Similarity=0.933 Sum_probs=47.0
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHh-cCCCCccccccccCC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-~knsCPICR~~l~~~ 388 (392)
...+|+||+++|..+++++++ ||.|.||..||++|+. .++.||+||.++++.
T Consensus 322 ~GveCaICms~fiK~d~~~vl-PC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp 374 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVL-PCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374 (374)
T ss_pred CCceEEEEhhhhcccceEEEe-ccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence 347899999999999998888 8999999999999998 688999999999863
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.16 E-value=2.1e-11 Score=97.20 Aligned_cols=47 Identities=36% Similarity=0.947 Sum_probs=37.3
Q ss_pred CCCccceecccccCC---------CceEEcccCCccccHHHHHHHHhcCCCCcccc
Q 016260 336 EEGNCVICLEEYKNM---------DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382 (392)
Q Consensus 336 ed~~C~ICLEdf~~g---------e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR 382 (392)
.++.|+||++.+.+. +....+.+|+|.||..||.+||+.+++||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999432 23445558999999999999999999999998
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.7e-10 Score=112.84 Aligned_cols=52 Identities=31% Similarity=0.772 Sum_probs=45.2
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
.....+|.|||+....+ ..+||||+||+.||..|+..+..||+||..+.+.+
T Consensus 236 ~~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34567899999998776 45599999999999999999999999999987764
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.9e-10 Score=112.76 Aligned_cols=52 Identities=37% Similarity=0.989 Sum_probs=42.4
Q ss_pred cCCCCccceeccc-ccCC--------C-ceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 334 MQEEGNCVICLEE-YKNM--------D-DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 334 ~~ed~~C~ICLEd-f~~g--------e-~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
...|..|.||+|+ +..+ + +..+| ||||.+|..|++.|+.++.+|||||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhccCCCcccCccc
Confidence 3467889999999 4433 1 23455 89999999999999999999999999953
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=1.1e-09 Score=102.31 Aligned_cols=50 Identities=32% Similarity=0.802 Sum_probs=40.2
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc----------------CCCCccccccccCC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM----------------KNVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~----------------knsCPICR~~l~~~ 388 (392)
.++..|+||++.++++ ++++|||.||..||.+|+.. +..||+||..+...
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 4567899999998765 33489999999999999852 24699999988654
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=7.9e-10 Score=105.29 Aligned_cols=52 Identities=37% Similarity=0.768 Sum_probs=41.5
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc---CCCCccccccccCCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~---knsCPICR~~l~~~~ 389 (392)
......|.||||.-+++ | ++.|||.||+.||.+||.. ++.||+||..|..++
T Consensus 44 ~~~~FdCNICLd~akdP--V--vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP--V--VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCC--E--EeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 34567899999998765 3 4469999999999999976 345999999886543
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=1.5e-09 Score=75.07 Aligned_cols=44 Identities=45% Similarity=1.156 Sum_probs=36.2
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCccccccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASV 385 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l 385 (392)
.|+||++.+. ....+++|+|.||..|++.|++. ...||+||..+
T Consensus 1 ~C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh---CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 23344479999999999999997 67799999864
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.84 E-value=1.6e-09 Score=79.81 Aligned_cols=46 Identities=35% Similarity=0.859 Sum_probs=38.0
Q ss_pred CCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
+..|.||++.... +..+ ||+|. ||..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLL-PCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEE-TTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEe-CCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5789999998654 4444 89999 999999999999999999999874
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=4e-09 Score=73.99 Aligned_cols=39 Identities=38% Similarity=1.049 Sum_probs=32.2
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccc
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 381 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPIC 381 (392)
|+||++.+.+ ..++++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999886 33344899999999999999998899998
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.78 E-value=4.5e-09 Score=86.56 Aligned_cols=51 Identities=33% Similarity=0.782 Sum_probs=40.7
Q ss_pred CCCccceecccccC--------C-CceEEcccCCccccHHHHHHHHhc---CCCCcccccccc
Q 016260 336 EEGNCVICLEEYKN--------M-DDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~--------g-e~v~~LlpCgH~FH~~CI~kWLk~---knsCPICR~~l~ 386 (392)
.++.|.||...|.. + +...++..|+|.||..||.+||.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 47889999999873 2 223455589999999999999985 467999999764
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.3e-09 Score=97.00 Aligned_cols=51 Identities=31% Similarity=0.692 Sum_probs=42.5
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
.....|+|||+.+... +.+-+.|||+||..||+..|+....||+|++.|..
T Consensus 129 ~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3447899999999864 43445899999999999999999999999987643
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.74 E-value=5.4e-09 Score=99.46 Aligned_cols=51 Identities=35% Similarity=0.818 Sum_probs=40.9
Q ss_pred CCCCccceecccccCC-----CceEEcccCCccccHHHHHHHHhcC------CCCccccccc
Q 016260 335 QEEGNCVICLEEYKNM-----DDVGTLKSCGHDYHVTCIKKWLSMK------NVCPICKASV 385 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~g-----e~v~~LlpCgH~FH~~CI~kWLk~k------nsCPICR~~l 385 (392)
..+.+|+||+|..-.+ ...+.|.+|+|.||..||.+|.+.+ ..||+||..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 4568899999987432 1356788999999999999999753 4599999875
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.1e-09 Score=111.04 Aligned_cols=50 Identities=32% Similarity=0.934 Sum_probs=43.4
Q ss_pred CCCccceecccccCCCc--eEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 336 EEGNCVICLEEYKNMDD--VGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~--v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.+..|+||+|++..+.. ..+| +|+|+||..|+++||+++++||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 47889999999998654 4555 89999999999999999999999999543
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=1.8e-08 Score=76.30 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=41.0
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..|+||++.+.++ ++.+|||+|+..||.+|++.+..||+|+..+..++
T Consensus 2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 5799999999875 33489999999999999998889999999875443
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.59 E-value=3e-08 Score=71.41 Aligned_cols=44 Identities=39% Similarity=0.899 Sum_probs=36.0
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
.|.||++.|.. +....+++|||+||..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC-CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999943 334556699999999999999856678999985
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.54 E-value=4.1e-08 Score=68.91 Aligned_cols=39 Identities=41% Similarity=1.095 Sum_probs=32.8
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHh--cCCCCccc
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS--MKNVCPIC 381 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk--~knsCPIC 381 (392)
|+||++.+..+. .+++|+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988652 3458999999999999999 35569998
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.54 E-value=4.2e-08 Score=70.55 Aligned_cols=38 Identities=32% Similarity=0.871 Sum_probs=29.0
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHhcC----CCCccc
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPIC 381 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----nsCPIC 381 (392)
|+||++.|.++ +.++|||.|+..||.+|.+.. ..||+|
T Consensus 1 CpiC~~~~~~P----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999976 334899999999999999763 359998
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=5.7e-08 Score=99.75 Aligned_cols=51 Identities=29% Similarity=0.694 Sum_probs=43.3
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
......|+||++.|..+ ++++|+|.||..||..|+.....||+||..+...
T Consensus 23 Le~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 44567899999999865 3458999999999999999888899999987654
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=1.1e-07 Score=63.52 Aligned_cols=38 Identities=58% Similarity=1.282 Sum_probs=31.2
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHh-cCCCCccc
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPIC 381 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-~knsCPIC 381 (392)
|+||++... .+..+ +|+|.||..||+.|++ .+..||+|
T Consensus 1 C~iC~~~~~---~~~~~-~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVL-PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEe-cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889998833 34445 8999999999999998 56679998
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.47 E-value=7.6e-08 Score=78.41 Aligned_cols=35 Identities=31% Similarity=0.736 Sum_probs=30.4
Q ss_pred ceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 352 DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 352 ~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.......|.|.||..||.+||..++.||+||++..
T Consensus 47 C~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 47 CPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 44555579999999999999999999999999754
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.27 E-value=4.9e-07 Score=65.66 Aligned_cols=35 Identities=26% Similarity=0.664 Sum_probs=22.4
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHhcC
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK 375 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k 375 (392)
|+||.+ |...+...++++|||+|+.+||+++++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 87766655555899999999999999853
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.3e-07 Score=88.34 Aligned_cols=51 Identities=31% Similarity=0.787 Sum_probs=42.4
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHH-HHhcCCC-CccccccccCCC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WLSMKNV-CPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~k-WLk~kns-CPICR~~l~~~~ 389 (392)
..+.+|.||++....+ ..++|||+||..||.. |-+.+.. ||+||+.+.+++
T Consensus 213 ~~d~kC~lC~e~~~~p----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc----ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4578899999987754 3448999999999999 9888776 999999887654
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.5e-07 Score=74.84 Aligned_cols=52 Identities=29% Similarity=0.692 Sum_probs=40.4
Q ss_pred CCCCccceecccccC---------CCceEEcccCCccccHHHHHHHHhc---CCCCcccccccc
Q 016260 335 QEEGNCVICLEEYKN---------MDDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~---------ge~v~~LlpCgH~FH~~CI~kWLk~---knsCPICR~~l~ 386 (392)
..++.|-||.-.|.. ++...++..|.|.||..||.+||.. +..||+||++..
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 456689999988864 3334455579999999999999965 345999999764
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.1e-07 Score=94.32 Aligned_cols=49 Identities=29% Similarity=0.699 Sum_probs=39.6
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcC-----CCCccccccccCCC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-----NVCPICKASVMADS 389 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k-----nsCPICR~~l~~~~ 389 (392)
+..|+|||+....+ .++.|||+||..||.+++... ..||+|+..|-..+
T Consensus 186 ~~~CPICL~~~~~p----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 67899999987654 444699999999999988653 45999999887654
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.3e-07 Score=93.82 Aligned_cols=52 Identities=27% Similarity=0.758 Sum_probs=40.9
Q ss_pred CCCccceecccccCCC----c---------eEEcccCCccccHHHHHHHHh-cCCCCccccccccC
Q 016260 336 EEGNCVICLEEYKNMD----D---------VGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge----~---------v~~LlpCgH~FH~~CI~kWLk-~knsCPICR~~l~~ 387 (392)
....|+||+.++..-. + -..++||.|+||..|+++|.. .|-.||+||+.+++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4457999999885411 1 134569999999999999998 56689999999875
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.14 E-value=5.8e-07 Score=90.12 Aligned_cols=51 Identities=31% Similarity=0.698 Sum_probs=44.6
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCCC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 390 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~~ 390 (392)
.-..|-||.+.|..+ +++||+|.||.-||.+.|..+..||.|+.++.....
T Consensus 22 ~lLRC~IC~eyf~ip----~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP----MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhcCc----eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 346899999999976 666999999999999999999999999998876554
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.11 E-value=2.2e-06 Score=63.71 Aligned_cols=42 Identities=29% Similarity=0.735 Sum_probs=31.9
Q ss_pred ccceecccccCCCceEEcccCC-----ccccHHHHHHHHhcC--CCCcccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMK--NVCPICK 382 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCg-----H~FH~~CI~kWLk~k--nsCPICR 382 (392)
.|.||++ ..+++...+. ||. |.+|..||.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVS-PCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 3334444455 785 889999999999654 4799995
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=79.63 Aligned_cols=45 Identities=36% Similarity=0.854 Sum_probs=38.6
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
.+...|+||++.|..+ ++++|+|.||..||..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999987 44589999999999999985567999993
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=2e-06 Score=68.38 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=36.7
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCccccccccCC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD 388 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~ 388 (392)
...|+||.+.+.++ ++++|||.|...||.+||.. ...||+|+..+...
T Consensus 4 ~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46799999999976 33489999999999999998 78899999887654
No 33
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.7e-06 Score=71.69 Aligned_cols=49 Identities=31% Similarity=0.764 Sum_probs=38.1
Q ss_pred CCCccceecccc-------------cCCCceEEcccCCccccHHHHHHHHhcCCCCcccccc
Q 016260 336 EEGNCVICLEEY-------------KNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf-------------~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~ 384 (392)
..+.|+||..-+ ...|.+.....|.|.||..||.+||++++.||+|.++
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 445677765443 2344566666899999999999999999999999775
No 34
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5e-06 Score=83.84 Aligned_cols=47 Identities=34% Similarity=0.703 Sum_probs=39.5
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
...+|.|||.+-++ +.+| ||.|. .|..|.+..--+.+.|||||+.+.
T Consensus 289 ~gkeCVIClse~rd---t~vL-PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVL-PCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcc---eEEe-cchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 35689999999775 3445 99999 999999988778899999999874
No 35
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.93 E-value=2.2e-06 Score=94.66 Aligned_cols=54 Identities=22% Similarity=0.780 Sum_probs=40.8
Q ss_pred ccCCCCccceecccccCCC-c--eEEcccCCccccHHHHHHHHhc--CCCCcccccccc
Q 016260 333 QMQEEGNCVICLEEYKNMD-D--VGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM 386 (392)
Q Consensus 333 ~~~ed~~C~ICLEdf~~ge-~--v~~LlpCgH~FH~~CI~kWLk~--knsCPICR~~l~ 386 (392)
.....++|+||...+..-+ + -.++..|+|.||..||.+|++. ++.||+||.++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456789999998876211 1 1234479999999999999986 467999998874
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.90 E-value=2.8e-06 Score=67.46 Aligned_cols=50 Identities=26% Similarity=0.752 Sum_probs=23.9
Q ss_pred CCccceecccccCCCce--EEc--ccCCccccHHHHHHHHhc----C-------CCCcccccccc
Q 016260 337 EGNCVICLEEYKNMDDV--GTL--KSCGHDYHVTCIKKWLSM----K-------NVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v--~~L--lpCgH~FH~~CI~kWLk~----k-------nsCPICR~~l~ 386 (392)
+..|.||.+.+...+++ .+. ..|+..||..||.+||.. + ..||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999987633322 222 268999999999999963 1 13999999874
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.5e-06 Score=82.40 Aligned_cols=52 Identities=31% Similarity=0.688 Sum_probs=42.8
Q ss_pred cCCCCccceecccccCCC-------ceEEcccCCccccHHHHHHHHh--cCCCCcccccccc
Q 016260 334 MQEEGNCVICLEEYKNMD-------DVGTLKSCGHDYHVTCIKKWLS--MKNVCPICKASVM 386 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge-------~v~~LlpCgH~FH~~CI~kWLk--~knsCPICR~~l~ 386 (392)
..++..|+||-..+...+ ++.+| .|+|+||..||+-|-. .+.+||.||..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 346788999998887654 57777 7999999999999985 4678999998764
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.87 E-value=5.5e-06 Score=81.85 Aligned_cols=46 Identities=26% Similarity=0.647 Sum_probs=40.6
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
-..|-||-+-|..+ .+++|||.||.-||...|..+..||+||.+..
T Consensus 25 ~lrC~IC~~~i~ip----~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIP----CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecc----eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 46799999998865 66699999999999999999999999998654
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.9e-06 Score=85.50 Aligned_cols=51 Identities=33% Similarity=0.626 Sum_probs=41.5
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCccccccccCC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~ 388 (392)
..+..|+|||+.++.. +..+.|.|.||.+||.+-|+. ++.||.||+.+...
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3467899999998852 334479999999999999986 67899999987653
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.73 E-value=1e-05 Score=80.20 Aligned_cols=55 Identities=27% Similarity=0.806 Sum_probs=44.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHh-----------------------cCCCCccccccccCCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----------------------MKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk-----------------------~knsCPICR~~l~~~~ 389 (392)
......|+|||--|.+++...+. +|-|.||..|+.++|. .+..||+||..|..+.
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T-~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVT-ACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCCCceEEEEEeecCCCceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 34568899999999999877766 8999999999988771 1224999999886554
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.5e-05 Score=80.75 Aligned_cols=51 Identities=31% Similarity=0.875 Sum_probs=40.3
Q ss_pred CCCCccceecccccCCC----ceEEcccCCccccHHHHHHHHh--c-----CCCCccccccc
Q 016260 335 QEEGNCVICLEEYKNMD----DVGTLKSCGHDYHVTCIKKWLS--M-----KNVCPICKASV 385 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge----~v~~LlpCgH~FH~~CI~kWLk--~-----knsCPICR~~l 385 (392)
..+..|.||++...+.. ..++|++|.|.||..||.+|-. + .+.||+||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45788999999987643 1456678999999999999983 3 46799999753
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.51 E-value=3.9e-05 Score=79.48 Aligned_cols=50 Identities=28% Similarity=0.731 Sum_probs=38.9
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.+...|+||||-+.....-.+...|.|.||..|+.+|- ..+||+||-...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 45678999999988754322333699999999999995 468999998665
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.46 E-value=2.2e-05 Score=85.60 Aligned_cols=50 Identities=18% Similarity=0.480 Sum_probs=42.7
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
....|+||+..+.++...... +|+|.||..||..|-+.-.+||+||.++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k-~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEK-HTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccc-ccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 346799999999887555444 89999999999999999999999999764
No 44
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=6.4e-05 Score=57.60 Aligned_cols=46 Identities=30% Similarity=0.733 Sum_probs=35.6
Q ss_pred CCccceecccccCCCceEEcccCCcc-ccHHHHHHHHh-cCCCCcccccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLS-MKNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk-~knsCPICR~~l~ 386 (392)
+.+|.||+|.-.+. +|-.|||. .|..|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 47899999886643 34469998 89999655554 6889999999874
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.34 E-value=5.8e-05 Score=59.45 Aligned_cols=51 Identities=25% Similarity=0.633 Sum_probs=25.7
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCCCC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSEK 391 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~~k 391 (392)
.-..|++|.+.++++ ..+..|.|+||..||..-+. ..||+|+.++-..+.|
T Consensus 6 ~lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 6 ELLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp HTTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--
T ss_pred HhcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHH
Confidence 346899999998875 23448999999999988554 4599999988666543
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0004 Score=75.85 Aligned_cols=51 Identities=25% Similarity=0.662 Sum_probs=40.3
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCccccccccCCCC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADSE 390 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~~~ 390 (392)
.-..|+.|-.-+++. +++.|+|+||..||..-+.. ...||.|-+.+-+.+.
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 346899999777653 34479999999999999965 5779999988766553
No 47
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.91 E-value=0.00036 Score=71.79 Aligned_cols=47 Identities=32% Similarity=0.791 Sum_probs=37.2
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhc--CCCCccccccccCC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVMAD 388 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--knsCPICR~~l~~~ 388 (392)
..|-||-|.-+ .|.+- ||||..|..|+..|-.. .+.||.||.+|.-.
T Consensus 370 eLCKICaendK---dvkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDK---DVKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCC---Ccccc-cccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 45999987644 34444 89999999999999854 56799999998654
No 48
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00055 Score=65.93 Aligned_cols=54 Identities=20% Similarity=0.477 Sum_probs=44.5
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc--------CCCCccccccccCCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--------knsCPICR~~l~~~~ 389 (392)
...+.-|..|-..+..+|+++. -|-|.||.+|+..|-.. .-.||-|..+|+++.
T Consensus 47 sDY~pNC~LC~t~La~gdt~RL--vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRL--VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred cCCCCCCceeCCccccCcceee--hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 3445679999999999988864 49999999999999854 224999999998865
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00073 Score=69.91 Aligned_cols=49 Identities=22% Similarity=0.743 Sum_probs=41.0
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
..+..|.||...+..+ +.+||||.||..||.+-+.....||+||..+..
T Consensus 82 ~sef~c~vc~~~l~~p----v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP----VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC----ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4567899999888865 333999999999999988878889999998763
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.71 E-value=0.0008 Score=69.32 Aligned_cols=53 Identities=25% Similarity=0.672 Sum_probs=43.8
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..++..|+||...+.++-.. ..|+|.||..||.+|+..+..||.|+..+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~---~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT---TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCC---CCCCCcccccccchhhccCcCCcccccccchhh
Confidence 34568999999999987332 279999999999999999999999988775443
No 51
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.66 E-value=0.0013 Score=50.47 Aligned_cols=42 Identities=24% Similarity=0.623 Sum_probs=27.9
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc--CCCCcc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPI 380 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--knsCPI 380 (392)
....|+|.+..|+++ +... .|+|.|-++.|.+||+. ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 357899999999975 4444 79999999999999954 345998
No 52
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0011 Score=61.02 Aligned_cols=31 Identities=39% Similarity=0.813 Sum_probs=27.6
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccH
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHV 365 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~ 365 (392)
..+..+|.||||++..++++.+| ||-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARL-PCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARL-PCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceecc-ceEEEeec
Confidence 34567899999999999999999 89999996
No 53
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.39 E-value=0.00086 Score=67.40 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=41.1
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
..-..|.+|---|.+..+|. -|-|.||..||.+.|...+.||+|...|-
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 34578999999888765442 69999999999999999999999987663
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0036 Score=61.85 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=40.0
Q ss_pred cccCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc--CCCCcccccccc
Q 016260 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM 386 (392)
Q Consensus 332 ~~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--knsCPICR~~l~ 386 (392)
.....+.+|++|.+.-..+ -+..+|+|+||.-||..-+.. .-+||.|-.++.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3445678999999886655 233379999999999887754 357999988775
No 55
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0016 Score=64.84 Aligned_cols=90 Identities=23% Similarity=0.386 Sum_probs=51.6
Q ss_pred cCCCCCCCHHHHHHhhhhcCCCCCCCC--HHHHHhhcccceeecc----cccCCCCccceecccccCCCceEEcccCCcc
Q 016260 289 RLDIDNMTYEELLALGERIGSVSTGLS--EDLISRCLTESIYCSA----DQMQEEGNCVICLEEYKNMDDVGTLKSCGHD 362 (392)
Q Consensus 289 rlDiDnmsyEeLlaL~Erig~v~tGLS--ee~I~kll~~~~~~~s----~~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~ 362 (392)
-+++++++-.+|++...+-...-.|-. .+.+.+....-+.... .....+..|.||++...+ ...| +|||.
T Consensus 246 l~d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k~~~g~~~~~s~~~~~LC~ICmDaP~D---CvfL-eCGHm 321 (350)
T KOG4275|consen 246 LLDEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYKGNDGEQHSRSLATRRLCAICMDAPRD---CVFL-ECGHM 321 (350)
T ss_pred ccccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCCcc---eEEe-ecCcE
Confidence 356677777777777766544444433 2222222111111000 111225679999988664 4344 89997
Q ss_pred -ccHHHHHHHHhcCCCCcccccccc
Q 016260 363 -YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 363 -FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
-|.+|=+. -+.|||||+.|.
T Consensus 322 VtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 322 VTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred Eeehhhccc----cccCchHHHHHH
Confidence 67888544 348999998764
No 56
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0038 Score=63.59 Aligned_cols=49 Identities=29% Similarity=0.581 Sum_probs=40.5
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
.++..|+||.-.-.. .+..||+|.-|+.||.+-|...+.|=.||..+.+
T Consensus 420 sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccch----hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 567889999865332 2445999999999999999999999999998763
No 57
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.0047 Score=60.34 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=47.2
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
...|+||.+.+.+...+.+|.||||+|+.+|+.+.++.-..||+|-.++...+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 45799999999998888888899999999999999998899999988876654
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.11 E-value=0.002 Score=66.32 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=38.0
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcC--CCCccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k--nsCPICR~ 383 (392)
+.-|..|-+-+...++-..-+||.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 457999999998766544445999999999999999764 56999994
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.71 E-value=0.0043 Score=55.43 Aligned_cols=36 Identities=28% Similarity=0.613 Sum_probs=28.9
Q ss_pred CCccceecccccCCCceEEcccCC------ccccHHHHHHHHh
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCG------HDYHVTCIKKWLS 373 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCg------H~FH~~CI~kWLk 373 (392)
..+|.||++.+.+.+-|+.+ +|+ |.||.+|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~v-t~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYV-TDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEE-ecCCeehHHHHHHHHHHHHHHh
Confidence 56899999999984445555 576 8999999999943
No 60
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.55 E-value=0.0065 Score=67.46 Aligned_cols=49 Identities=39% Similarity=0.837 Sum_probs=39.5
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC--C-----CCcccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--N-----VCPICKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k--n-----sCPICR~~ 384 (392)
...+|.||++.+.....+-....|-|+||..||++|-+.. . .||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4568999999998877776666799999999999999651 1 29999843
No 61
>PHA02862 5L protein; Provisional
Probab=95.55 E-value=0.01 Score=53.77 Aligned_cols=45 Identities=27% Similarity=0.721 Sum_probs=33.7
Q ss_pred CCccceecccccCCCceEEcccCC-----ccccHHHHHHHHhc--CCCCcccccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSM--KNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCg-----H~FH~~CI~kWLk~--knsCPICR~~l~ 386 (392)
...|-||.++-.+. + -||. -..|.+|+.+|+.. +..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~--~---~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER--N---NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC--c---ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35799999985432 2 2665 46899999999975 556999998753
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.50 E-value=0.0054 Score=58.26 Aligned_cols=43 Identities=23% Similarity=0.643 Sum_probs=36.5
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 384 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~ 384 (392)
..|.||-++|+.+ +.+.|||.||..|.-+-.+....|-+|-+.
T Consensus 197 F~C~iCKkdy~sp----vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESP----VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccch----hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 4699999999976 444799999999988877778889999764
No 63
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.50 E-value=0.0096 Score=69.18 Aligned_cols=50 Identities=30% Similarity=0.729 Sum_probs=37.2
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcC----------CCCcccccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----------NVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k----------nsCPICR~~l~ 386 (392)
.++.|.||..+--...-...| .|+|+||..|...-|.+. -+||+|+..|.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL-~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQL-DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhCCCcceec-CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 467799998776555455566 799999999987665432 24999998764
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.41 E-value=0.0095 Score=43.87 Aligned_cols=40 Identities=30% Similarity=0.844 Sum_probs=27.3
Q ss_pred cceecccccCCCceEEcccCC-----ccccHHHHHHHHhc--CCCCccc
Q 016260 340 CVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSM--KNVCPIC 381 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCg-----H~FH~~CI~kWLk~--knsCPIC 381 (392)
|-||++.-...+.+ +. ||. -..|..||.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~~l-i~-pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-IS-PCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E--SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ec-ccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 78999987776533 23 675 36899999999975 4569988
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.35 E-value=0.014 Score=53.51 Aligned_cols=48 Identities=25% Similarity=0.651 Sum_probs=34.4
Q ss_pred cCCCCccceecccccCCCceEEcccCCc-----cccHHHHHHHHhcC--CCCcccccccc
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGH-----DYHVTCIKKWLSMK--NVCPICKASVM 386 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH-----~FH~~CI~kWLk~k--nsCPICR~~l~ 386 (392)
...+..|-||.++... ... ||.. ..|.+|+.+|+..+ ..|++|+++..
T Consensus 5 s~~~~~CRIC~~~~~~--~~~---PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--VTN---YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC--ccC---CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456789999988542 222 5543 56999999999764 56999998653
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.011 Score=61.29 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=35.8
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhc--------CCCCccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--------knsCPICR~ 383 (392)
...|.||.++......+..+ ||+|+||+.|++.++.. .-.||-|+.
T Consensus 184 lf~C~ICf~e~~G~~c~~~l-pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFL-PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeec-ccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45799999998766666666 89999999999999953 224876654
No 67
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.012 Score=59.93 Aligned_cols=44 Identities=30% Similarity=0.671 Sum_probs=30.4
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
....|.||+++..+ ...+ ||||+-| |..--.. ...||+||+.|.
T Consensus 304 ~p~lcVVcl~e~~~---~~fv-pcGh~cc--ct~cs~~-l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFV-PCGHVCC--CTLCSKH-LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeee-cCCcEEE--chHHHhh-CCCCchhHHHHH
Confidence 34679999999876 3334 8999866 6544332 334999998763
No 68
>PHA03096 p28-like protein; Provisional
Probab=95.01 E-value=0.012 Score=58.67 Aligned_cols=37 Identities=35% Similarity=0.716 Sum_probs=30.3
Q ss_pred CccceecccccCCC----ceEEcccCCccccHHHHHHHHhc
Q 016260 338 GNCVICLEEYKNMD----DVGTLKSCGHDYHVTCIKKWLSM 374 (392)
Q Consensus 338 ~~C~ICLEdf~~ge----~v~~LlpCgH~FH~~CI~kWLk~ 374 (392)
..|.||++...... .-+.|..|.|.||..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 67999999987532 34577789999999999999965
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.94 E-value=0.011 Score=62.93 Aligned_cols=51 Identities=25% Similarity=0.660 Sum_probs=38.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-----CCCCccccccccCC
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-----KNVCPICKASVMAD 388 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-----knsCPICR~~l~~~ 388 (392)
...+..|-+|-+.-++. +...|.|.||..||+.++.. +.+||+|-..+.-+
T Consensus 533 nk~~~~C~lc~d~aed~----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccCceeecccCChhhhh----HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34567899999876543 23379999999999999853 45699998766443
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.76 E-value=0.028 Score=54.79 Aligned_cols=53 Identities=17% Similarity=0.444 Sum_probs=42.0
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
.....|+|+..+|........|.+|||+|...||++- +....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 3456799999999766667777799999999999997 2345799998876544
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.012 Score=58.67 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=37.9
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
..|-||...|..+ +...|+|.||..|..+=++....|.+|-+.+
T Consensus 242 f~c~icr~~f~~p----Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP----VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc----hhhcCCceeehhhhccccccCCcceeccccc
Confidence 4599999999976 3447999999999999888888999998765
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.58 E-value=0.023 Score=42.45 Aligned_cols=44 Identities=30% Similarity=0.635 Sum_probs=23.2
Q ss_pred cceecccccCCC-ceEEcccCCccccHHHHHHHHh-cCCCCcccccc
Q 016260 340 CVICLEEYKNMD-DVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKAS 384 (392)
Q Consensus 340 C~ICLEdf~~ge-~v~~LlpCgH~FH~~CI~kWLk-~knsCPICR~~ 384 (392)
|++|.+++...+ .+.-. +|+..++..|...-+. ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999995544 34334 6899999999988886 47789999975
No 73
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.46 E-value=0.017 Score=47.59 Aligned_cols=34 Identities=32% Similarity=0.654 Sum_probs=26.6
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHH
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIK 369 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~ 369 (392)
..++..|.||-..+... ... ..||+|+||..|++
T Consensus 75 i~~~~~C~vC~k~l~~~-~f~-~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNS-VFV-VFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCc-eEE-EeCCCeEEeccccc
Confidence 34567899999998873 344 44999999999985
No 74
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.05 E-value=0.038 Score=56.43 Aligned_cols=49 Identities=31% Similarity=0.656 Sum_probs=36.3
Q ss_pred cccCCCCccceecccccCCCceEEcccCCccccHHHHHH--HHhcCCCCcccccc
Q 016260 332 DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK--WLSMKNVCPICKAS 384 (392)
Q Consensus 332 ~~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~k--WLk~knsCPICR~~ 384 (392)
+..++...|.||.+.+.- + .++||+|..|--|..+ -|-.++.||+||.+
T Consensus 56 dtDEen~~C~ICA~~~TY---s-~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 56 DTDEENMNCQICAGSTTY---S-ARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccceeEEecCCceE---E-EeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 344566779999987653 3 3449999999999754 34567889999985
No 75
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.044 Score=55.48 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=37.7
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
.+...|+||+....++ ++.. --|-+||..||-+.+...+.||+--.++
T Consensus 298 ~~~~~CpvClk~r~Np-tvl~--vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNP-TVLE--VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCC-ceEE--ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3456899999998775 3322 3699999999999999999999865543
No 76
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.036 Score=57.53 Aligned_cols=32 Identities=38% Similarity=0.926 Sum_probs=25.8
Q ss_pred EcccCCccccHHHHHHHHhc--CCCCcccccccc
Q 016260 355 TLKSCGHDYHVTCIKKWLSM--KNVCPICKASVM 386 (392)
Q Consensus 355 ~LlpCgH~FH~~CI~kWLk~--knsCPICR~~l~ 386 (392)
+.+.|+|.|...||.+||.+ +..||.|+..+.
T Consensus 23 vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 23 VSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred eeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 44489999999999999963 345999987654
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.0041 Score=63.99 Aligned_cols=50 Identities=34% Similarity=0.727 Sum_probs=43.0
Q ss_pred CCccceecccccCC-CceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 337 EGNCVICLEEYKNM-DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~g-e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
...|+||.+.++.. +++-.+ -|+|.+|.+||.+||..+..||.|+.++.-
T Consensus 196 v~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 46799999999875 566666 699999999999999998899999998854
No 78
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.84 E-value=0.029 Score=55.67 Aligned_cols=46 Identities=30% Similarity=0.594 Sum_probs=39.8
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
.-|+||.+.+.........++|+|..|..|+.......-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3499999999887766566699999999999999888889999988
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.72 E-value=0.073 Score=54.30 Aligned_cols=53 Identities=23% Similarity=0.445 Sum_probs=37.1
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCccccccccCC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMAD 388 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~~~ 388 (392)
+++-|+.|+|++...++-..-.+||-..|.-|...--+. +..||-||..-..+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 344599999999887764443489988777775543332 56899999865443
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.66 E-value=0.067 Score=53.78 Aligned_cols=46 Identities=28% Similarity=0.558 Sum_probs=35.2
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhc-CCCCccccc-ccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKA-SVM 386 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~-~l~ 386 (392)
..|+.|-..+..+-+ .+.|+|.||.+||..-|.. ...||.|.. .|+
T Consensus 275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 789999888776522 2469999999999988765 567999944 444
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=0.069 Score=59.68 Aligned_cols=44 Identities=27% Similarity=0.710 Sum_probs=33.3
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
....|.+|--.++.+ .| -- .|+|.||..|+. .....||.|+.++
T Consensus 839 q~skCs~C~~~LdlP-~V-hF-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP-FV-HF-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccc-ee-ee-ecccHHHHHhhc---cCcccCCccchhh
Confidence 346899998888875 22 23 599999999998 3346799998743
No 82
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.97 E-value=0.062 Score=59.29 Aligned_cols=45 Identities=33% Similarity=0.818 Sum_probs=34.4
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcC--CCCccccccccC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMA 387 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k--nsCPICR~~l~~ 387 (392)
..|.||++ .+.+... +|+|.||..|+.+-+... ..||+||..+..
T Consensus 455 ~~c~ic~~----~~~~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc----cccceee-cccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 2233333 799999999999988653 349999987643
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.77 E-value=0.062 Score=40.25 Aligned_cols=31 Identities=29% Similarity=0.713 Sum_probs=22.6
Q ss_pred cCC-ccccHHHHHHHHhcCCCCccccccccCC
Q 016260 358 SCG-HDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 358 pCg-H~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
.|. |..|..|+...|.....||+|+.+++..
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 586 9999999999999999999999998753
No 84
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.75 E-value=0.081 Score=38.35 Aligned_cols=41 Identities=27% Similarity=0.659 Sum_probs=23.1
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHhcCC--CCccc
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN--VCPIC 381 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn--sCPIC 381 (392)
|.+|-+....|...... .|.=.+|..|++++++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66787777766433222 4888899999999998755 69988
No 85
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.63 E-value=0.21 Score=51.41 Aligned_cols=29 Identities=31% Similarity=0.874 Sum_probs=22.2
Q ss_pred CCccccHHHHHHHHhc-------------CCCCccccccccC
Q 016260 359 CGHDYHVTCIKKWLSM-------------KNVCPICKASVMA 387 (392)
Q Consensus 359 CgH~FH~~CI~kWLk~-------------knsCPICR~~l~~ 387 (392)
|.-..|.+|+-+|+.. +-.||+||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 5677899999999943 2249999998643
No 86
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.62 E-value=0.11 Score=40.04 Aligned_cols=46 Identities=30% Similarity=0.510 Sum_probs=32.9
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..|..|...- .++.++||+|+.+..|..-+ +-+-||+|-+.+...+
T Consensus 8 ~~~~~~~~~~----~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVG----TKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccc----cccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 4577776542 23456699999999997654 4567999998886544
No 87
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.34 E-value=0.13 Score=50.02 Aligned_cols=51 Identities=29% Similarity=0.688 Sum_probs=36.2
Q ss_pred CCccceecccccCCCceEEcccCC-----ccccHHHHHHHHhc--CCCCccccccccC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSM--KNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCg-----H~FH~~CI~kWLk~--knsCPICR~~l~~ 387 (392)
+..|-||.++.........+.||. ...|..|+.+|+.. +..|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 578999999876543211233664 56799999999985 4569999886543
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=0.09 Score=53.07 Aligned_cols=43 Identities=23% Similarity=0.621 Sum_probs=29.2
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
-.|.-|--.+.. -+++.||+|+||.+|... ..-+.||.|-..|
T Consensus 91 HfCd~Cd~PI~I---YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAI---YGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCccee---eecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 346666544432 346669999999999743 3356899997655
No 89
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.28 E-value=0.083 Score=61.34 Aligned_cols=45 Identities=38% Similarity=0.841 Sum_probs=37.1
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 384 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~ 384 (392)
-..|.||++.+.... ++. .|+|.+|..|+..|+..+..||+|+..
T Consensus 1153 ~~~c~ic~dil~~~~--~I~-~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIA-GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHhcC--Cee-eechhHhhhHHHHHHHHhccCcchhhh
Confidence 347999999988432 223 599999999999999999999999853
No 90
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.22 E-value=0.16 Score=51.05 Aligned_cols=44 Identities=25% Similarity=0.652 Sum_probs=35.1
Q ss_pred CCCCccceecccccCCCceEEcccC--CccccHHHHHHHHhcCCCCcccccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSC--GHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpC--gH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.+..+|+||.+.+..+ +. .| ||..|..|-.+ ..+.||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~-QC~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IF-QCDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----ce-ecCCCcEehhhhhhh---hcccCCccccccc
Confidence 3457899999999876 34 57 69999999753 4678999999886
No 91
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.19 Score=47.41 Aligned_cols=52 Identities=29% Similarity=0.709 Sum_probs=35.3
Q ss_pred CCCccceecccccCC---CceEEcccCCccccHHHHHHHHhc----C-------CCCccccccccC
Q 016260 336 EEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSM----K-------NVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~g---e~v~~LlpCgH~FH~~CI~kWLk~----k-------nsCPICR~~l~~ 387 (392)
+...|.||...--++ +.+.--..|+--||.-|+..||+. . ..||.|..++.-
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 345688887543332 223333379999999999999963 1 139999988743
No 92
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.42 E-value=0.1 Score=57.36 Aligned_cols=53 Identities=32% Similarity=0.644 Sum_probs=41.3
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC---CCccccccccCCCCC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASVMADSEK 391 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn---sCPICR~~l~~~~~k 391 (392)
.-..+|+||+..+..+ .++.|-|.|+..|+..-|..++ .||+|+..+...+.+
T Consensus 19 ~k~lEc~ic~~~~~~p----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLR 74 (684)
T ss_pred hhhccCCceeEEeecc----chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhcc
Confidence 3467899999999976 4558999999999988776544 599999776554443
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=0.12 Score=56.51 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=33.1
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
...|.||+..|....-..+.+.|||..|..|+.+.. +.+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 457999998887655444445899999999998764 56788 654
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.56 E-value=0.32 Score=47.75 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=35.3
Q ss_pred CCCccceecccc-cCCCc-eEEcccCCccccHHHHHHHHhcC-CCCc--cccc
Q 016260 336 EEGNCVICLEEY-KNMDD-VGTLKSCGHDYHVTCIKKWLSMK-NVCP--ICKA 383 (392)
Q Consensus 336 ed~~C~ICLEdf-~~ge~-v~~LlpCgH~FH~~CI~kWLk~k-nsCP--ICR~ 383 (392)
.+..|+||..+. -.++. +.+-+.|-|..|.+|+++-|... ..|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 356899999874 44543 33443499999999999999875 5699 6744
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.67 E-value=0.68 Score=35.55 Aligned_cols=43 Identities=30% Similarity=0.705 Sum_probs=35.3
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcc--ccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPI--CKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPI--CR~ 383 (392)
...|.+|-+.|..++.+.+.+.|+=.||..|..+ ...|-+ |..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~ 49 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGT 49 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCC
Confidence 4679999999998888989999999999999755 455655 544
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=0.34 Score=46.22 Aligned_cols=40 Identities=28% Similarity=0.614 Sum_probs=27.9
Q ss_pred ccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.|-+|-+. +....++||.|. +|..|-.. ...||+|+....
T Consensus 160 ~Cr~C~~~----~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGER----EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcC----CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 38888755 223345599987 89999654 345999987653
No 97
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=0.38 Score=47.58 Aligned_cols=49 Identities=24% Similarity=0.651 Sum_probs=33.5
Q ss_pred CCCccceecccccCCCceEEcccCC-----ccccHHHHHHHHhcCC--------CCcccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMKN--------VCPICKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCg-----H~FH~~CI~kWLk~kn--------sCPICR~~ 384 (392)
.+..|=||...=++.-..--.-||. |-.|..||..|+..|. .||-|+++
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 3456889997755432221233664 7799999999996533 39999986
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.09 E-value=0.69 Score=42.71 Aligned_cols=35 Identities=31% Similarity=0.674 Sum_probs=22.2
Q ss_pred CCCccceecccccCCCceEEcc------c-----CC-ccccHHHHHHHHh
Q 016260 336 EEGNCVICLEEYKNMDDVGTLK------S-----CG-HDYHVTCIKKWLS 373 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~Ll------p-----Cg-H~FH~~CI~kWLk 373 (392)
++..|+||||--.+. | .|+ . |. -.-|..||++.-+
T Consensus 1 ed~~CpICme~PHNA--V-LLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA--V-LLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCce--E-EEEeccccCCccccccCCccchhHHHHHHHH
Confidence 367899999987653 1 111 0 33 2347889998864
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.28 E-value=0.51 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.994 Sum_probs=22.4
Q ss_pred cccCCccccHHHHHHHHhcCCCCcc
Q 016260 356 LKSCGHDYHVTCIKKWLSMKNVCPI 380 (392)
Q Consensus 356 LlpCgH~FH~~CI~kWLk~knsCPI 380 (392)
+..|+|+.|.+|.+.|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 3469999999999999999999985
No 100
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.50 E-value=0.57 Score=52.47 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=34.0
Q ss_pred CCccceecccccCCCc---eEEcccCCccccHHHHHHHHhc------CCCCccccccccC
Q 016260 337 EGNCVICLEEYKNMDD---VGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~---v~~LlpCgH~FH~~CI~kWLk~------knsCPICR~~l~~ 387 (392)
...|.||.-++..++. +..+-.|+|.||..||+.|+.+ +-.|++|...|..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 4456666666665332 2222249999999999999954 2348999876644
No 101
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=0.43 Score=49.44 Aligned_cols=39 Identities=26% Similarity=0.660 Sum_probs=29.3
Q ss_pred CCCccceecccccCCC-ceEEcccCCccccHHHHHHHHhcC
Q 016260 336 EEGNCVICLEEYKNMD-DVGTLKSCGHDYHVTCIKKWLSMK 375 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge-~v~~LlpCgH~FH~~CI~kWLk~k 375 (392)
....|.||..+....+ ... ...|+|.||..|+++.+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhhh
Confidence 4578999995555543 344 44799999999999998754
No 102
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=0.46 Score=53.65 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=28.6
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHH
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 372 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL 372 (392)
...++.|.||...+... .-.+.||||.||.+||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC--cceeeeccchHHHHHHHHHH
Confidence 35678999999888764 33344899999999997765
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.38 E-value=0.62 Score=46.94 Aligned_cols=29 Identities=17% Similarity=0.551 Sum_probs=23.1
Q ss_pred CCccccHHHHHHHHh-------------cCCCCccccccccC
Q 016260 359 CGHDYHVTCIKKWLS-------------MKNVCPICKASVMA 387 (392)
Q Consensus 359 CgH~FH~~CI~kWLk-------------~knsCPICR~~l~~ 387 (392)
|....|.+|+.+|+. .+-+||+||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 778899999999983 24469999997643
No 104
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=81.42 E-value=0.64 Score=50.64 Aligned_cols=42 Identities=19% Similarity=0.644 Sum_probs=28.3
Q ss_pred CCccceeccc-----ccCCCceEEcccCCccccHHHHHHHHhcCCCCcccc
Q 016260 337 EGNCVICLEE-----YKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382 (392)
Q Consensus 337 d~~C~ICLEd-----f~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR 382 (392)
...|.||... |+ .+++.++..|+++||+.|++. .+..||.|-
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 3468888433 22 345566668999999999754 234499993
No 105
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.39 E-value=1.1 Score=40.33 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=36.3
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHh---cCCCCccccccccCCC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKASVMADS 389 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk---~knsCPICR~~l~~~~ 389 (392)
...+|-||.|.-.+..=+.----||-..|.-|-....+ ....||+||..+...+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 45689999998665321111114898899887655444 3567999999987654
No 106
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.31 E-value=0.88 Score=44.56 Aligned_cols=35 Identities=29% Similarity=0.740 Sum_probs=27.0
Q ss_pred CceEEcccCCccccHHHHHHHHhcC-CCCccccccc
Q 016260 351 DDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASV 385 (392)
Q Consensus 351 e~v~~LlpCgH~FH~~CI~kWLk~k-nsCPICR~~l 385 (392)
+.+.+.+.|||.+|..|+.+.+... ..||.||...
T Consensus 19 ~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 19 DHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred ccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 3333444799999999998888764 4599999983
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.71 E-value=1.2 Score=50.28 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=37.1
Q ss_pred CCCCccceecccccCCCceEEcccCCc-----cccHHHHHHHHhc--CCCCcccccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGH-----DYHVTCIKKWLSM--KNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH-----~FH~~CI~kWLk~--knsCPICR~~l~ 386 (392)
.++..|-||..+=..++.+.- ||+. ..|.+|+.+|+.- +..|-+|+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfh--PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFH--PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcc--cccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 456789999988665555432 5663 4899999999975 456999998764
No 108
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.84 E-value=1.5 Score=47.25 Aligned_cols=47 Identities=32% Similarity=0.924 Sum_probs=37.2
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
.....|.||+++. ..+. .+|. |..|+.+|+..+..||.|++.+..++
T Consensus 477 ~~~~~~~~~~~~~----~~~~-~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARI-TPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhcc-cccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 3457899999998 2223 3688 89999999999999999998876554
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.93 E-value=3.3 Score=46.43 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=31.2
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPI 380 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPI 380 (392)
..|++|-..+.. .......|+|.-|.+|+++|+.....||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 468888766553 22234479999999999999998887766
No 110
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=70.39 E-value=4.4 Score=41.48 Aligned_cols=54 Identities=22% Similarity=0.516 Sum_probs=35.9
Q ss_pred cCCCCccceecccccC---------------CCceEEcccCCccccHHHHHHHHhc---------CCCCccccccccC
Q 016260 334 MQEEGNCVICLEEYKN---------------MDDVGTLKSCGHDYHVTCIKKWLSM---------KNVCPICKASVMA 387 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~---------------ge~v~~LlpCgH~FH~~CI~kWLk~---------knsCPICR~~l~~ 387 (392)
...+.+|++|+..=.. +--.-...||||+--.+-.+-|.+. +..||.|-+.+..
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3456789999976211 1111122489999888899999864 3459999876643
No 111
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.74 E-value=5.4 Score=29.69 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=20.1
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhc---CC--CCcccccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM---KN--VCPICKAS 384 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~---kn--sCPICR~~ 384 (392)
..|+|....+..+ ++.. .|.|.-|.+ ++.||.. ++ .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEET-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688888877764 4444 799975433 4566643 22 39999863
No 113
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.66 E-value=4.1 Score=41.61 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=38.5
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
..|+||-+.....+....-.+|++..|..|+..-......||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 57999999885554433333789989999998888888899999976543
No 114
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.20 E-value=4.5 Score=42.21 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=37.7
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC---CCccccccccCC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASVMAD 388 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn---sCPICR~~l~~~ 388 (392)
...|||=.+.-.+.+-...| .|||+..++-|.+..+... .||.|=.+....
T Consensus 334 vF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~ 387 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGSQSFKCPYCPVEQLAS 387 (394)
T ss_pred eeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCCeeeeCCCCCcccCHH
Confidence 34699977776665556566 8999999999999887643 599996554433
No 115
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.04 E-value=2.6 Score=40.81 Aligned_cols=42 Identities=31% Similarity=0.697 Sum_probs=34.4
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR 382 (392)
..|.+|.+-.-.+ +++..|+=.||..|+.+.++....||.|-
T Consensus 182 k~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 4699998877654 23447888999999999999989999993
No 116
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=66.86 E-value=7.7 Score=30.13 Aligned_cols=47 Identities=21% Similarity=0.574 Sum_probs=33.5
Q ss_pred CccceecccccCCCceEEcccCC--ccccHHHHHHHHhcCCCCccccccccCC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCG--HDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCg--H~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
..|-.|-.++.....-..+ |. ..||.+|.+.-| ++.||.|-.++...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3577787777665422222 54 459999999977 67999999988754
No 117
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.38 E-value=2.2 Score=47.89 Aligned_cols=43 Identities=33% Similarity=0.591 Sum_probs=22.7
Q ss_pred CCccceecccccCC----CceEEcccCCccccHHHHHHHHhcCCCCccc
Q 016260 337 EGNCVICLEEYKNM----DDVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 381 (392)
Q Consensus 337 d~~C~ICLEdf~~g----e~v~~LlpCgH~FH~~CI~kWLk~knsCPIC 381 (392)
+..|.-|.+..... +.++++ .|+|.||..|+.--..+++ |-+|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 34566666655421 244444 5666666666655444333 5444
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.54 E-value=6 Score=41.08 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=30.5
Q ss_pred CccceecccccCCC--ceEEcccCCccccHHHHHHHHhcCCCCccc
Q 016260 338 GNCVICLEEYKNMD--DVGTLKSCGHDYHVTCIKKWLSMKNVCPIC 381 (392)
Q Consensus 338 ~~C~ICLEdf~~ge--~v~~LlpCgH~FH~~CI~kWLk~knsCPIC 381 (392)
..|++|.-.++..+ .-... .|+|.||..|...|...+..|.-|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCCccccCc
Confidence 46888776665433 22344 499999999999998877766544
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=65.22 E-value=4.3 Score=38.35 Aligned_cols=41 Identities=27% Similarity=0.676 Sum_probs=30.1
Q ss_pred CCccceeccc-----ccCCCceEEcccCCccccHHHHHHHHhcCCCCccccc
Q 016260 337 EGNCVICLEE-----YKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEd-----f~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
...|-||-++ |.. +.+.+...|+-+||..|.. +..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4678899753 222 3566777899999999986 267999954
No 120
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=61.33 E-value=9.2 Score=42.29 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=44.6
Q ss_pred CCCCHHHHHHhhhhcCCCCC--CCCHHHHHhhcccceeecc--cccCCCCccceecccccCCCceEEcccCCccccH--H
Q 016260 293 DNMTYEELLALGERIGSVST--GLSEDLISRCLTESIYCSA--DQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHV--T 366 (392)
Q Consensus 293 DnmsyEeLlaL~Erig~v~t--GLSee~I~kll~~~~~~~s--~~~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~--~ 366 (392)
...+.+.|++....+..... ..+...+++.+..-...+. ....-...|+|+..- ..+||.+..|+ .
T Consensus 258 ~~~t~~~llq~~~~~~~~~~~~~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~R--------m~~P~r~~~CkHlQ 329 (636)
T KOG2169|consen 258 EGLTSKDLLQRLKQNGKINRNLSQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMR--------MSLPARGHTCKHLQ 329 (636)
T ss_pred cccCHHHHHHHHhccCCccCchhHhHHHhhcccccCCcccceeccceeEecCCcccce--------eecCCcccccccce
Confidence 45677888887776665544 3333333332111100000 001123457777433 34466666655 6
Q ss_pred HHHHHH-hc----CC--CCccccccccCCC
Q 016260 367 CIKKWL-SM----KN--VCPICKASVMADS 389 (392)
Q Consensus 367 CI~kWL-k~----kn--sCPICR~~l~~~~ 389 (392)
|.+.-+ .. +. .||+|.+.+.-++
T Consensus 330 cFD~~~~lq~n~~~pTW~CPVC~~~~~~e~ 359 (636)
T KOG2169|consen 330 CFDALSYLQMNEQKPTWRCPVCQKAAPFEG 359 (636)
T ss_pred ecchhhhHHhccCCCeeeCccCCccccccc
Confidence 765433 21 11 2999988775443
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=5.2 Score=42.04 Aligned_cols=37 Identities=30% Similarity=0.770 Sum_probs=29.8
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM 374 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~ 374 (392)
.....|-||.+.+.. .+..+ .|+|.||..|+...|..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~-~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGL-GCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhc-CCCcHHHHHHHHHHhhh
Confidence 345789999999876 34344 89999999999999965
No 122
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.36 E-value=9.5 Score=37.90 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=28.7
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM 374 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~ 374 (392)
+-..|+.||..+.++ ++.+=||+|+.+||.+.+..
T Consensus 42 ~FdcCsLtLqPc~dP----vit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP----VITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCC----ccCCCCeeeeHHHHHHHHHH
Confidence 456799999999986 44478999999999998843
No 123
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=3 Score=40.81 Aligned_cols=48 Identities=31% Similarity=0.480 Sum_probs=36.8
Q ss_pred CCccceecccccC--CCceEEccc--------CCccccHHHHHHHHhcC-CCCcccccc
Q 016260 337 EGNCVICLEEYKN--MDDVGTLKS--------CGHDYHVTCIKKWLSMK-NVCPICKAS 384 (392)
Q Consensus 337 d~~C~ICLEdf~~--ge~v~~Llp--------CgH~FH~~CI~kWLk~k-nsCPICR~~ 384 (392)
...|.||...|.. ...+..++. |+|..|..|++.-+... ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3569999999984 223333346 99999999999998765 479999864
No 124
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=48.32 E-value=9.6 Score=38.07 Aligned_cols=48 Identities=25% Similarity=0.530 Sum_probs=34.0
Q ss_pred CccceecccccCCCceEEc---ccCCccccHHHHHHHHhc---------CCCCccccccc
Q 016260 338 GNCVICLEEYKNMDDVGTL---KSCGHDYHVTCIKKWLSM---------KNVCPICKASV 385 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~L---lpCgH~FH~~CI~kWLk~---------knsCPICR~~l 385 (392)
..|-||.+++.+.+..+.. +.|.-.+|..|+..-+.. ...||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999655544322 247788999999885432 34599998743
No 125
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=48.31 E-value=11 Score=27.46 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=23.6
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCC
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
|..|.+.+...+.+.. .-+..||..|+ .|-.|++.|...
T Consensus 1 C~~C~~~I~~~~~~~~--~~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK--AMGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEE--ETTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEE--eCCcEEEcccc--------ccCCCCCccCCC
Confidence 5666666665443322 25667777774 677777766543
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=45.68 E-value=17 Score=23.88 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=25.5
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.|..|-+.+...+..... =+..||..|+ .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcCc
Confidence 478888887765333222 3678998885 6888887663
No 127
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=44.76 E-value=12 Score=26.89 Aligned_cols=44 Identities=25% Similarity=0.522 Sum_probs=29.2
Q ss_pred ccceecccccCCCceEEcccCCccccHHHHHHHHhc------CCCCccccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKA 383 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~------knsCPICR~ 383 (392)
.|.||...-. .+.+...-.|.-.||..|+..=... .-.||.|+.
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889998433 3445455579999999998654431 234888863
No 128
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.85 E-value=21 Score=35.58 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=36.8
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..|+|---++...-....+-+|||+|-..-+++- ....|++|.+....++
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 4688877776665555566689999998887764 2567999988765544
No 129
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.32 E-value=7.9 Score=40.62 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=0.0
Q ss_pred CCccceecccccC-------------CC---ceEEcccCCccccHHHHHHHHhc---------CCCCcccccccc
Q 016260 337 EGNCVICLEEYKN-------------MD---DVGTLKSCGHDYHVTCIKKWLSM---------KNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~-------------ge---~v~~LlpCgH~FH~~CI~kWLk~---------knsCPICR~~l~ 386 (392)
...|+||+..-.- +. +-... ||||+-=.+..+-|-+. +..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~-PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFN-PCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeec-ccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 6689999976211 00 11223 89999999999999864 245999987764
No 130
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.64 E-value=9.6 Score=38.70 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=39.4
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccccccc
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~ 386 (392)
.....|-||.-.+..+... ..|.|.|+..|...|....+.||.||..+.
T Consensus 103 ~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3456799999888765433 259999999999999999999999987553
No 131
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.09 E-value=14 Score=37.47 Aligned_cols=36 Identities=19% Similarity=0.556 Sum_probs=28.0
Q ss_pred CCccceecccccCCCceEEcccC----CccccHHHHHHHHhcCC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSC----GHDYHVTCIKKWLSMKN 376 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpC----gH~FH~~CI~kWLk~kn 376 (392)
-..|.+|.|-+++..-| .| .|.||.-|-.+-+|.+.
T Consensus 268 pLcCTLC~ERLEDTHFV----QCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFV----QCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCcee----ecCCCcccceecccCHHHHHhhc
Confidence 47899999999875322 35 59999999999887643
No 132
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02189 cellulose synthase
Probab=38.70 E-value=24 Score=41.21 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=34.7
Q ss_pred CCccceecccccC---CCceEEcccCCccccHHHHHHHHhc-CCCCcccccccc
Q 016260 337 EGNCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~---ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~ 386 (392)
...|.||-+++.. ++.-+.+--|+--.|..|.+-=.+. ++.||-||+.-.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4579999999863 4334444457777999999543333 567999998653
No 134
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=38.28 E-value=8.7 Score=38.92 Aligned_cols=43 Identities=26% Similarity=0.551 Sum_probs=31.4
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCCC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 389 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~~ 389 (392)
..+|.-|.+-+....-|++ .=.|+||..|. .|-||+..+-+-+
T Consensus 92 GTKCsaC~~GIpPtqVVRk--Aqd~VYHl~CF--------~C~iC~R~L~TGd 134 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRK--AQDFVYHLHCF--------ACFICKRQLATGD 134 (383)
T ss_pred CCcchhhcCCCChHHHHHH--hhcceeehhhh--------hhHhhhcccccCC
Confidence 4579999988776544443 36799999996 6889988776544
No 135
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.02 E-value=22 Score=26.97 Aligned_cols=42 Identities=17% Similarity=0.534 Sum_probs=20.6
Q ss_pred cceecccccCCC------ceEEcccCCccccHHHHHHHHh-cCCCCcccc
Q 016260 340 CVICLEEYKNMD------DVGTLKSCGHDYHVTCIKKWLS-MKNVCPICK 382 (392)
Q Consensus 340 C~ICLEdf~~ge------~v~~LlpCgH~FH~~CI~kWLk-~knsCPICR 382 (392)
|--|+..|..+. ...+.+.|++.|+.+|= -.+. .--.||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 445666666542 45667789999999993 2222 223599884
No 136
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.53 E-value=38 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=33.6
Q ss_pred CCccceecccccCC----------CceEEcccCCccccHHHHHHHHhcCCCCcccc
Q 016260 337 EGNCVICLEEYKNM----------DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382 (392)
Q Consensus 337 d~~C~ICLEdf~~g----------e~v~~LlpCgH~FH~~CI~kWLk~knsCPICR 382 (392)
...|--|+..|... ........|++.||.+|=.-+-..-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34699999988653 12344668999999999666655556799995
No 137
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=35.90 E-value=19 Score=27.68 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=20.8
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHHh
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 373 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk 373 (392)
.+...|.+|...|..-..---...||++||..|....+.
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 345789999999976444334446999999999876553
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=34.51 E-value=23 Score=28.48 Aligned_cols=12 Identities=25% Similarity=0.944 Sum_probs=8.8
Q ss_pred cccHHHHHHHHh
Q 016260 362 DYHVTCIKKWLS 373 (392)
Q Consensus 362 ~FH~~CI~kWLk 373 (392)
-||..||.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 139
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=34.51 E-value=20 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=17.1
Q ss_pred CccceecccccCCCc-------eEEcccCCcccc
Q 016260 338 GNCVICLEEYKNMDD-------VGTLKSCGHDYH 364 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~-------v~~LlpCgH~FH 364 (392)
..|+-|...|..+++ ..+...|+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368888888876553 234446777764
No 140
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=33.06 E-value=20 Score=26.37 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.5
Q ss_pred ccCCCCCCCCCCCCccC
Q 016260 57 HVAPHWNPAPSSSGFTS 73 (392)
Q Consensus 57 ~~~~~~~~~~~~~~~~~ 73 (392)
.+|.|||.+-..|+|++
T Consensus 21 ~ip~H~~~~G~~d~~~~ 37 (51)
T PF07853_consen 21 QIPTHFNANGEPDGWGS 37 (51)
T ss_pred hhceeeCCCCCcccccc
Confidence 37999999999999998
No 141
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.00 E-value=33 Score=35.29 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcC---CCCccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK---NVCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k---nsCPICR~ 383 (392)
...|++--+.-.+.... .++.|||+.-.+-+...-+.. ..||.|=.
T Consensus 336 ~FiCPVlKe~~t~ENpP-~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPP-VMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCC-eeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34688765555544334 445899999999988866542 34999944
No 142
>PRK11827 hypothetical protein; Provisional
Probab=31.20 E-value=18 Score=28.30 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=11.7
Q ss_pred HHHhcCCCCccccccccCC
Q 016260 370 KWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 370 kWLk~knsCPICR~~l~~~ 388 (392)
+||..--.||+|+..+..+
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 4555455677777776543
No 143
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=30.59 E-value=26 Score=40.11 Aligned_cols=52 Identities=23% Similarity=0.546 Sum_probs=29.8
Q ss_pred CCCCccceecccccC------------CCceEEcccCCccccHHH-HHHH---------HhcCCCCc---ccccccc
Q 016260 335 QEEGNCVICLEEYKN------------MDDVGTLKSCGHDYHVTC-IKKW---------LSMKNVCP---ICKASVM 386 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~------------ge~v~~LlpCgH~FH~~C-I~kW---------Lk~knsCP---ICR~~l~ 386 (392)
.+-..|+||+..+.- +|...+++-||-.|-.+= |+.- ++...+|| ||.+...
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kft 679 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFT 679 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccc
Confidence 455689999988643 444444545665554331 2222 23345699 9977653
No 144
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=29.59 E-value=44 Score=34.53 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
....|-.|.++....... ++..|++.||.+|=.--=..--.||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y-~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRY-RCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcE-EchhccceeeccchHHHHhhhhcCCCcCC
Confidence 344599998877765444 45579999999993221122235999963
No 145
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=29.52 E-value=36 Score=24.90 Aligned_cols=36 Identities=14% Similarity=0.437 Sum_probs=26.9
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHh
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 373 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk 373 (392)
..|.+|-..|..-..-.....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 568999888876443334447999999999877665
No 146
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.97 E-value=63 Score=26.59 Aligned_cols=47 Identities=17% Similarity=0.468 Sum_probs=28.8
Q ss_pred cceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccCC
Q 016260 340 CVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 388 (392)
Q Consensus 340 C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~~ 388 (392)
|--|-.++..+..-..+-.=.|.||.+|...-| +..||.|-.+++..
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~R 54 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVAR 54 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcC
Confidence 555655554332211110124789999998755 57899998877643
No 147
>PLN02436 cellulose synthase A
Probab=28.89 E-value=44 Score=39.37 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=34.4
Q ss_pred CCccceecccccC---CCceEEcccCCccccHHHHHHHHhc-CCCCcccccccc
Q 016260 337 EGNCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~---ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~ 386 (392)
...|-||-+++.. +|--+.+--|+--.|..|.+-=.+. ++.||-||+.-.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3579999999743 4444444457777999999543333 567999998643
No 148
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.87 E-value=21 Score=26.47 Aligned_cols=38 Identities=32% Similarity=0.668 Sum_probs=21.0
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhc--CCCCccccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KNVCPICKASV 385 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~--knsCPICR~~l 385 (392)
...|++|-+.+... .| +.| |.++-... ...||+|...+
T Consensus 2 ~f~CP~C~~~~~~~----~L--~~H-----~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL--VEH-----CEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH----HH--HHH-----HHhHCcCCCCCccCCCchhhh
Confidence 35799999865532 23 333 22222221 34599997654
No 149
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.52 E-value=54 Score=27.17 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCccceecccccC---CCceEEcccCCccccHHHHHHHHhc-CCCCccccccc
Q 016260 336 EEGNCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~---ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l 385 (392)
....|-||-+++.. ++-....--|+--.|..|..-=.+. +..||-|+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 34679999999854 3333333357777899998766665 56799999754
No 150
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=27.81 E-value=16 Score=39.82 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=44.6
Q ss_pred CCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
....|.+|+......++.+.+-.|.+.++..|+.+|-.....|+.|++.+..
T Consensus 259 ~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~ 310 (553)
T KOG4430|consen 259 NKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRT 310 (553)
T ss_pred cccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccc
Confidence 4567999999998888777776788999999999999888999999887643
No 151
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=27.64 E-value=35 Score=35.14 Aligned_cols=43 Identities=5% Similarity=-0.109 Sum_probs=31.9
Q ss_pred CCCccceecccccCCCceEEcccCCcc-ccHHHHHHHHhcCCCCcccccc
Q 016260 336 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKAS 384 (392)
Q Consensus 336 ed~~C~ICLEdf~~ge~v~~LlpCgH~-FH~~CI~kWLk~knsCPICR~~ 384 (392)
...+|-.|-+..... .+.+|+|. ||.+|.. +....+||+|-..
T Consensus 342 s~~~~~~~~~~~~st----~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLST----IWSGGNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred hhcccccccCceeee----EeecCCcccChhhhhh--cccCCcccccccc
Confidence 456788887665432 44589986 9999987 6677889999754
No 152
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.18 E-value=22 Score=26.49 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=6.0
Q ss_pred CCCccccccccC
Q 016260 376 NVCPICKASVMA 387 (392)
Q Consensus 376 nsCPICR~~l~~ 387 (392)
..||+|..++..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 379999988753
No 153
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.88 E-value=29 Score=22.68 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=12.5
Q ss_pred ccceecccccCCCceEEcccCCccc
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHDY 363 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~F 363 (392)
.|+-|-..+... ....+-|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466676665543 22333477766
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=26.45 E-value=23 Score=40.22 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=29.6
Q ss_pred CCCccceecccccC---------CCceEEcccCCccccHHHHHHHHhcCCCCccccccc
Q 016260 336 EEGNCVICLEEYKN---------MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 385 (392)
Q Consensus 336 ed~~C~ICLEdf~~---------ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l 385 (392)
.+..|+-|...|.. ....-.++.|+|.-|..=|.+ .+.||+|...+
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 34567777766643 112334457999888776644 57899997754
No 155
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.01 E-value=47 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=11.6
Q ss_pred ccceecccccCCCceEEcccCCccccHHHH
Q 016260 339 NCVICLEEYKNMDDVGTLKSCGHDYHVTCI 368 (392)
Q Consensus 339 ~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI 368 (392)
.|.+|.+.... ........|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47888877765 456666689999999986
No 156
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=25.89 E-value=33 Score=37.71 Aligned_cols=35 Identities=29% Similarity=0.679 Sum_probs=24.1
Q ss_pred CCCCccceecccccC-----------CCceEEcccCCccccHHHHHHH
Q 016260 335 QEEGNCVICLEEYKN-----------MDDVGTLKSCGHDYHVTCIKKW 371 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~-----------ge~v~~LlpCgH~FH~~CI~kW 371 (392)
.....|+||.|.|+. .+.| .+ .=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV-~l-e~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAV-YL-EFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeeccee-ee-ccCceeeccccchH
Confidence 455679999999975 2223 23 25789999998543
No 157
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.63 E-value=26 Score=40.07 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=26.6
Q ss_pred CCCCccceecccccCCCceEEcccCCccccHHHHHHHH
Q 016260 335 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 372 (392)
Q Consensus 335 ~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWL 372 (392)
.....|-.|....-. ..-++..|++.||..|++.|.
T Consensus 227 g~~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 227 GIREMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred Ccchhhhhhcccccc--eeEEccccCCeeeecchhhcc
Confidence 345678899766443 234556899999999999995
No 158
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.49 E-value=32 Score=35.41 Aligned_cols=25 Identities=36% Similarity=1.015 Sum_probs=16.6
Q ss_pred EcccCCcc--ccHHHHHHHHhc------CCCCcccccc
Q 016260 355 TLKSCGHD--YHVTCIKKWLSM------KNVCPICKAS 384 (392)
Q Consensus 355 ~LlpCgH~--FH~~CI~kWLk~------knsCPICR~~ 384 (392)
+.+.|||+ || .|=.+ ...||+||..
T Consensus 318 vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 318 VYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred EEEecccccccc-----ccccccccCcccCcCCeeeee
Confidence 34479987 55 57644 2349999874
No 159
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.16 E-value=43 Score=23.25 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=15.2
Q ss_pred ccceecccccCCCc-------eEEcccCCccc
Q 016260 339 NCVICLEEYKNMDD-------VGTLKSCGHDY 363 (392)
Q Consensus 339 ~C~ICLEdf~~ge~-------v~~LlpCgH~F 363 (392)
.|+=|...|..+++ ......|+|.|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 57788888776553 12333566666
No 160
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.53 E-value=40 Score=37.82 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=28.8
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCcccc
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICK 382 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR 382 (392)
..|.+|+..=...-.+..++.|+-.||..| |+...+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 468899865442223445457999998888 455577899993
No 161
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.39 E-value=27 Score=36.79 Aligned_cols=27 Identities=26% Similarity=0.728 Sum_probs=0.0
Q ss_pred EcccCCccccHHHHHHHHhc------CCCCcccccc
Q 016260 355 TLKSCGHDYHVTCIKKWLSM------KNVCPICKAS 384 (392)
Q Consensus 355 ~LlpCgH~FH~~CI~kWLk~------knsCPICR~~ 384 (392)
+-+.|||++.. ..|-.. ...||+||+.
T Consensus 305 VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 305 VYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred eeccccceeee---cccccccccccccccCCCcccc
Confidence 44589998664 367642 3459999975
No 162
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=23.24 E-value=30 Score=41.84 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=38.1
Q ss_pred cCCCCccceecccccCCCceEEcccCCccccHHHHHHHHhcCC----CCccccccc
Q 016260 334 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASV 385 (392)
Q Consensus 334 ~~ed~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~kn----sCPICR~~l 385 (392)
......|.||.......+.+... -|.-.||..|+..-+.... .||-|+..-
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 44567899999988775444333 6888899999999886532 399998754
No 163
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=23.14 E-value=51 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=29.6
Q ss_pred CCccceecccccCCCceEEcccCCccccHHHHHHHHhcCCCCccccccccC
Q 016260 337 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 387 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~knsCPICR~~l~~ 387 (392)
-..|.-|...+.--|.+. |-.||..+..|..|++.+..
T Consensus 33 rS~C~~C~~~L~~~~lIP-------------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIP-------------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccch-------------HHHHHHhCCCCcccCCCCCh
Confidence 467999988877655443 55899999999999998753
No 164
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.26 E-value=75 Score=37.53 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCccceecccccC---CCceEEcccCCccccHHHHHHHHhc-CCCCcccccccc
Q 016260 337 EGNCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 386 (392)
Q Consensus 337 d~~C~ICLEdf~~---ge~v~~LlpCgH~FH~~CI~kWLk~-knsCPICR~~l~ 386 (392)
...|-||-+++.. ++--+.+--|+--.|..|.+-=-+. +..||-||+.-.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3479999999854 3333334467777999998443333 567999998543
No 165
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.77 E-value=13 Score=36.73 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=20.8
Q ss_pred CCccceecccccCCCceEEcc--cCCccccHHHHHHHHhcCCCCccccc
Q 016260 337 EGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSMKNVCPICKA 383 (392)
Q Consensus 337 d~~C~ICLEdf~~ge~v~~Ll--pCgH~FH~~CI~kWLk~knsCPICR~ 383 (392)
...|+||=..-.... +..-. --.+.+|.-|-..|-.....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 468999977643321 10000 02466888899999888889999954
No 166
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=21.50 E-value=17 Score=36.66 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=28.7
Q ss_pred CccceecccccCCCceEEcccCCccccHHHHHHHHhcC
Q 016260 338 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK 375 (392)
Q Consensus 338 ~~C~ICLEdf~~ge~v~~LlpCgH~FH~~CI~kWLk~k 375 (392)
..|.||.++|..+...... .|--+||..|+..|++..
T Consensus 215 rvC~~CF~el~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRE-DSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchh-hccccccccccccccccc
Confidence 3899999999864444444 566699999999999764
No 167
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=44 Score=32.25 Aligned_cols=21 Identities=43% Similarity=0.854 Sum_probs=15.0
Q ss_pred HHHHHHHHh-cCCCCccccccc
Q 016260 365 VTCIKKWLS-MKNVCPICKASV 385 (392)
Q Consensus 365 ~~CI~kWLk-~knsCPICR~~l 385 (392)
+.||.+--. ..+-|||||-+-
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 578877544 466799999764
No 168
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.42 E-value=35 Score=35.59 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.1
Q ss_pred CCCCccceeccccc
Q 016260 335 QEEGNCVICLEEYK 348 (392)
Q Consensus 335 ~ed~~C~ICLEdf~ 348 (392)
..++.|++|-+...
T Consensus 13 dl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccCccc
Confidence 34678999987654
Done!