Query 016262
Match_columns 392
No_of_seqs 262 out of 2445
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840 Kinesin light chain [C 99.2 6.9E-11 1.5E-15 119.5 13.2 186 190-392 206-393 (508)
2 PF15227 zf-C3HC4_4: zinc fing 99.0 4.6E-11 1E-15 79.5 1.0 34 92-126 1-42 (42)
3 KOG1840 Kinesin light chain [C 99.0 4.2E-09 9.2E-14 106.7 11.4 148 234-392 202-351 (508)
4 PF13424 TPR_12: Tetratricopep 98.8 2.2E-08 4.8E-13 76.0 9.3 77 273-356 2-78 (78)
5 TIGR00599 rad18 DNA repair pro 98.8 3.5E-09 7.6E-14 103.6 5.5 63 88-151 25-93 (397)
6 KOG0287 Postreplication repair 98.8 2.5E-09 5.4E-14 99.6 3.2 61 88-149 22-88 (442)
7 smart00504 Ubox Modified RING 98.8 4.5E-09 9.7E-14 76.6 3.7 56 89-145 1-62 (63)
8 KOG4367 Predicted Zn-finger pr 98.8 5.5E-09 1.2E-13 100.2 4.9 32 87-119 2-33 (699)
9 PLN03208 E3 ubiquitin-protein 98.7 7.8E-09 1.7E-13 90.7 3.6 44 88-132 17-80 (193)
10 KOG0317 Predicted E3 ubiquitin 98.7 8.9E-09 1.9E-13 94.6 3.4 44 88-132 238-285 (293)
11 PF04564 U-box: U-box domain; 98.6 1.7E-08 3.7E-13 75.9 3.0 61 88-149 3-70 (73)
12 KOG1130 Predicted G-alpha GTPa 98.6 1.4E-07 2.9E-12 91.0 9.2 129 248-391 172-300 (639)
13 KOG4626 O-linked N-acetylgluco 98.6 4.2E-08 9.2E-13 98.6 5.9 135 225-392 348-482 (966)
14 KOG0823 Predicted E3 ubiquitin 98.6 1.9E-08 4.1E-13 89.9 2.0 44 88-132 46-96 (230)
15 KOG0320 Predicted E3 ubiquitin 98.6 7E-08 1.5E-12 82.6 5.3 47 86-132 128-179 (187)
16 KOG2177 Predicted E3 ubiquitin 98.6 1.5E-07 3.3E-12 89.9 8.0 61 88-149 12-76 (386)
17 PF14835 zf-RING_6: zf-RING of 98.5 3.4E-08 7.5E-13 70.3 2.0 54 89-143 7-65 (65)
18 PF13923 zf-C3HC4_2: Zinc fing 98.5 3.2E-08 7E-13 64.8 1.3 34 92-126 1-39 (39)
19 PF13920 zf-C3HC4_3: Zinc fing 98.4 7.8E-08 1.7E-12 66.7 1.1 43 89-132 2-49 (50)
20 KOG1130 Predicted G-alpha GTPa 98.4 2.9E-06 6.3E-11 82.0 11.9 145 231-390 195-339 (639)
21 COG5432 RAD18 RING-finger-cont 98.4 1.4E-07 3.1E-12 86.3 2.6 58 89-147 25-88 (391)
22 PHA02929 N1R/p28-like protein; 98.4 1.3E-07 2.9E-12 86.6 1.6 50 88-137 173-233 (238)
23 PF13424 TPR_12: Tetratricopep 98.4 3.4E-07 7.3E-12 69.4 3.6 69 322-392 3-72 (78)
24 PF14634 zf-RING_5: zinc-RING 98.3 4.9E-07 1.1E-11 60.9 3.1 38 91-128 1-44 (44)
25 PF13639 zf-RING_2: Ring finge 98.3 1.6E-07 3.4E-12 63.3 0.5 37 91-127 2-44 (44)
26 PHA02926 zinc finger-like prot 98.3 3.5E-07 7.5E-12 81.3 2.0 51 88-138 169-237 (242)
27 PF00097 zf-C3HC4: Zinc finger 98.3 3.3E-07 7.2E-12 60.6 1.4 34 92-126 1-41 (41)
28 KOG2660 Locus-specific chromos 98.3 4.2E-07 9.2E-12 85.2 2.3 63 88-150 14-86 (331)
29 COG5574 PEX10 RING-finger-cont 98.1 1.1E-06 2.3E-11 80.1 1.7 44 88-132 214-263 (271)
30 PF14938 SNAP: Soluble NSF att 98.1 1.7E-05 3.7E-10 75.6 9.2 133 243-391 47-180 (282)
31 KOG4626 O-linked N-acetylgluco 98.1 3.7E-05 8E-10 77.9 11.7 115 245-392 334-448 (966)
32 cd00162 RING RING-finger (Real 98.0 3.2E-06 6.9E-11 56.4 2.6 39 91-129 1-44 (45)
33 PF13445 zf-RING_UBOX: RING-ty 98.0 1.5E-06 3.3E-11 57.8 0.6 27 92-120 1-31 (43)
34 KOG2164 Predicted E3 ubiquitin 98.0 1.6E-06 3.5E-11 85.8 1.0 43 89-132 186-237 (513)
35 smart00184 RING Ring finger. E 98.0 3.6E-06 7.7E-11 54.2 2.1 34 92-126 1-39 (39)
36 KOG0311 Predicted E3 ubiquitin 97.9 1.7E-06 3.6E-11 81.8 -0.3 60 88-147 42-109 (381)
37 TIGR00570 cdk7 CDK-activating 97.9 1E-05 2.2E-10 76.4 4.1 44 88-132 2-55 (309)
38 KOG1173 Anaphase-promoting com 97.8 8.7E-05 1.9E-09 74.6 8.8 101 277-392 415-515 (611)
39 TIGR00990 3a0801s09 mitochondr 97.7 0.00011 2.5E-09 77.5 9.5 101 277-392 468-568 (615)
40 TIGR00990 3a0801s09 mitochondr 97.7 8.9E-05 1.9E-09 78.4 7.9 122 238-392 372-493 (615)
41 KOG0804 Cytoplasmic Zn-finger 97.7 0.00012 2.7E-09 71.4 7.7 41 88-128 174-219 (493)
42 CHL00033 ycf3 photosystem I as 97.7 0.00064 1.4E-08 59.3 11.7 114 235-363 39-153 (168)
43 PF14938 SNAP: Soluble NSF att 97.6 0.00052 1.1E-08 65.4 11.4 98 243-353 86-184 (282)
44 KOG4159 Predicted E3 ubiquitin 97.6 3.4E-05 7.4E-10 76.0 3.2 63 87-150 82-155 (398)
45 COG5152 Uncharacterized conser 97.5 5.2E-05 1.1E-09 66.0 2.5 54 89-143 196-254 (259)
46 CHL00033 ycf3 photosystem I as 97.5 0.00092 2E-08 58.4 10.1 70 273-353 32-101 (168)
47 KOG1173 Anaphase-promoting com 97.5 0.001 2.2E-08 67.1 10.9 144 190-371 387-530 (611)
48 TIGR02521 type_IV_pilW type IV 97.5 0.00058 1.3E-08 61.1 8.6 94 186-304 34-127 (234)
49 PF13414 TPR_11: TPR repeat; P 97.4 0.00076 1.6E-08 49.4 7.3 64 276-353 3-67 (69)
50 KOG0978 E3 ubiquitin ligase in 97.4 6.7E-05 1.4E-09 78.0 1.6 44 88-132 642-690 (698)
51 PRK02603 photosystem I assembl 97.3 0.0021 4.6E-08 56.3 10.3 115 234-363 38-153 (172)
52 PF13374 TPR_10: Tetratricopep 97.3 0.00052 1.1E-08 44.7 4.9 40 323-362 1-42 (42)
53 PRK15359 type III secretion sy 97.3 0.00056 1.2E-08 58.4 6.4 91 280-392 28-118 (144)
54 KOG0824 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 66.7 2.3 48 90-138 8-61 (324)
55 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00018 3.8E-09 54.0 1.1 37 91-127 21-73 (73)
56 PRK02603 photosystem I assembl 97.1 0.0062 1.3E-07 53.4 11.1 69 274-353 33-101 (172)
57 COG5222 Uncharacterized conser 97.1 0.00058 1.3E-08 63.2 4.6 60 89-149 274-342 (427)
58 KOG1813 Predicted E3 ubiquitin 97.0 0.0003 6.5E-09 65.3 2.1 50 89-139 241-295 (313)
59 KOG0825 PHD Zn-finger protein 96.9 0.00026 5.6E-09 73.2 0.6 44 89-132 123-172 (1134)
60 PRK11447 cellulose synthase su 96.9 0.0036 7.8E-08 71.1 9.8 134 239-391 359-520 (1157)
61 KOG4628 Predicted E3 ubiquitin 96.9 0.00041 8.9E-09 66.8 1.7 43 90-132 230-279 (348)
62 PRK09782 bacteriophage N4 rece 96.9 0.003 6.5E-08 70.0 8.5 114 245-392 590-703 (987)
63 KOG2879 Predicted E3 ubiquitin 96.8 0.0009 1.9E-08 61.5 2.9 46 87-132 237-288 (298)
64 KOG1126 DNA-binding cell divis 96.8 0.0029 6.3E-08 65.0 6.8 91 278-390 491-581 (638)
65 PRK11788 tetratricopeptide rep 96.8 0.012 2.7E-07 57.9 11.3 59 235-304 111-169 (389)
66 PF13176 TPR_7: Tetratricopept 96.7 0.0039 8.6E-08 39.6 4.9 32 326-357 1-32 (36)
67 PRK15174 Vi polysaccharide exp 96.7 0.0093 2E-07 63.7 10.6 94 277-392 285-378 (656)
68 PRK11189 lipoprotein NlpI; Pro 96.7 0.006 1.3E-07 58.5 8.2 61 277-351 99-159 (296)
69 TIGR02521 type_IV_pilW type IV 96.7 0.0078 1.7E-07 53.6 8.5 97 276-392 65-161 (234)
70 cd00189 TPR Tetratricopeptide 96.6 0.0077 1.7E-07 44.7 6.8 91 279-391 3-93 (100)
71 KOG0553 TPR repeat-containing 96.6 0.0052 1.1E-07 57.8 6.6 95 272-372 77-191 (304)
72 PRK15359 type III secretion sy 96.6 0.014 3.1E-07 49.6 8.9 104 238-372 31-134 (144)
73 PRK11447 cellulose synthase su 96.6 0.0024 5.1E-08 72.6 5.1 130 236-392 608-737 (1157)
74 PLN03088 SGT1, suppressor of 96.6 0.0058 1.3E-07 60.2 7.2 91 280-392 6-96 (356)
75 PF13414 TPR_11: TPR repeat; P 96.5 0.0029 6.3E-08 46.2 3.5 61 324-392 3-64 (69)
76 PF13176 TPR_7: Tetratricopept 96.5 0.0079 1.7E-07 38.2 5.0 31 278-308 1-31 (36)
77 PF13432 TPR_16: Tetratricopep 96.5 0.0077 1.7E-07 43.4 5.5 59 281-353 2-60 (65)
78 KOG0802 E3 ubiquitin ligase [P 96.4 0.0013 2.7E-08 68.5 1.7 43 88-130 290-340 (543)
79 TIGR02552 LcrH_SycD type III s 96.4 0.0096 2.1E-07 49.4 6.7 92 278-391 19-110 (135)
80 TIGR02917 PEP_TPR_lipo putativ 96.3 0.026 5.6E-07 61.0 11.1 58 326-392 806-863 (899)
81 PRK10370 formate-dependent nit 96.3 0.013 2.7E-07 52.9 7.1 93 277-391 74-169 (198)
82 COG5540 RING-finger-containing 96.2 0.002 4.4E-08 60.0 1.6 42 90-131 324-372 (374)
83 COG3063 PilF Tfp pilus assembl 96.2 0.024 5.2E-07 51.6 8.1 90 280-391 39-128 (250)
84 KOG0543 FKBP-type peptidyl-pro 96.2 0.018 3.8E-07 56.4 7.7 111 274-392 206-317 (397)
85 KOG1002 Nucleotide excision re 96.2 0.0034 7.5E-08 62.5 2.8 66 49-132 513-587 (791)
86 TIGR02917 PEP_TPR_lipo putativ 96.1 0.021 4.4E-07 61.8 9.0 31 275-305 124-154 (899)
87 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.039 8.4E-07 55.2 9.8 71 272-353 71-141 (453)
88 KOG0297 TNF receptor-associate 96.1 0.0037 8.1E-08 62.2 2.7 44 88-132 20-68 (391)
89 PF13374 TPR_10: Tetratricopep 96.0 0.017 3.7E-07 37.3 5.0 38 276-313 2-39 (42)
90 TIGR03302 OM_YfiO outer membra 96.0 0.066 1.4E-06 49.0 10.6 176 185-391 35-228 (235)
91 KOG2003 TPR repeat-containing 96.0 0.064 1.4E-06 53.2 10.4 104 238-372 497-600 (840)
92 KOG1941 Acetylcholine receptor 95.9 0.19 4.1E-06 48.7 13.3 110 244-362 175-284 (518)
93 PRK09782 bacteriophage N4 rece 95.9 0.031 6.7E-07 62.1 9.3 108 234-372 612-719 (987)
94 PRK11788 tetratricopeptide rep 95.9 0.06 1.3E-06 53.0 10.6 86 243-352 192-277 (389)
95 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.064 1.4E-06 42.8 9.0 98 278-391 4-101 (119)
96 COG5243 HRD1 HRD ubiquitin lig 95.9 0.003 6.5E-08 60.4 1.1 45 86-130 284-344 (491)
97 KOG1039 Predicted E3 ubiquitin 95.9 0.0042 9.1E-08 60.2 2.0 46 87-132 159-222 (344)
98 PF12688 TPR_5: Tetratrico pep 95.8 0.11 2.4E-06 42.8 10.0 64 279-353 4-67 (120)
99 PRK15363 pathogenicity island 95.8 0.047 1E-06 47.0 8.0 84 272-372 65-148 (157)
100 PF11789 zf-Nse: Zinc-finger o 95.8 0.0045 9.8E-08 43.9 1.3 36 89-125 11-53 (57)
101 PRK12370 invasion protein regu 95.8 0.075 1.6E-06 55.6 11.0 60 278-351 340-399 (553)
102 KOG2003 TPR repeat-containing 95.8 0.045 9.8E-07 54.2 8.5 100 276-391 558-685 (840)
103 KOG4265 Predicted E3 ubiquitin 95.8 0.0046 9.9E-08 59.2 1.7 43 89-132 290-337 (349)
104 PRK04841 transcriptional regul 95.7 0.077 1.7E-06 58.6 11.6 109 238-357 498-606 (903)
105 PRK15179 Vi polysaccharide bio 95.7 0.048 1E-06 58.4 9.3 126 233-391 88-213 (694)
106 COG3063 PilF Tfp pilus assembl 95.7 0.29 6.2E-06 44.7 12.7 135 185-356 37-171 (250)
107 PF12895 Apc3: Anaphase-promot 95.7 0.012 2.7E-07 44.8 3.5 83 289-392 2-84 (84)
108 PLN03088 SGT1, suppressor of 95.6 0.076 1.7E-06 52.3 9.9 99 243-372 14-112 (356)
109 KOG2376 Signal recognition par 95.6 0.11 2.3E-06 53.2 10.8 73 279-351 178-251 (652)
110 PRK04841 transcriptional regul 95.6 0.087 1.9E-06 58.2 11.3 137 239-391 460-598 (903)
111 PRK15174 Vi polysaccharide exp 95.6 0.059 1.3E-06 57.6 9.5 92 278-391 248-343 (656)
112 PF13429 TPR_15: Tetratricopep 95.5 0.048 1E-06 51.5 7.8 108 277-392 147-274 (280)
113 KOG0553 TPR repeat-containing 95.5 0.15 3.2E-06 48.2 10.4 34 272-305 145-178 (304)
114 PRK11189 lipoprotein NlpI; Pro 95.4 0.056 1.2E-06 51.8 7.9 92 236-353 103-194 (296)
115 PRK15363 pathogenicity island 95.4 0.13 2.8E-06 44.4 9.1 62 278-353 37-98 (157)
116 KOG1125 TPR repeat-containing 95.2 0.061 1.3E-06 54.8 7.5 117 253-381 413-550 (579)
117 PF00515 TPR_1: Tetratricopept 95.2 0.054 1.2E-06 33.5 4.7 31 324-354 1-31 (34)
118 KOG4172 Predicted E3 ubiquitin 95.1 0.0034 7.3E-08 43.2 -1.1 42 90-132 8-55 (62)
119 cd00189 TPR Tetratricopeptide 95.1 0.037 8.1E-07 40.8 4.5 86 243-353 12-97 (100)
120 PF12861 zf-Apc11: Anaphase-pr 95.1 0.018 4E-07 44.0 2.7 42 90-131 33-82 (85)
121 TIGR02552 LcrH_SycD type III s 95.1 0.13 2.8E-06 42.5 8.1 92 237-353 23-114 (135)
122 PF14447 Prok-RING_4: Prokaryo 95.1 0.0095 2.1E-07 41.4 0.9 42 90-132 8-51 (55)
123 PRK15179 Vi polysaccharide bio 95.0 0.067 1.5E-06 57.2 7.5 95 276-392 86-180 (694)
124 PRK12370 invasion protein regu 95.0 0.073 1.6E-06 55.7 7.7 81 290-392 318-398 (553)
125 TIGR03302 OM_YfiO outer membra 94.9 0.15 3.3E-06 46.6 9.0 130 237-391 39-191 (235)
126 KOG1941 Acetylcholine receptor 94.9 0.23 5E-06 48.2 10.0 75 275-357 245-324 (518)
127 KOG1125 TPR repeat-containing 94.9 0.025 5.5E-07 57.4 3.8 95 237-349 436-530 (579)
128 TIGR02795 tol_pal_ybgF tol-pal 94.9 0.28 6.1E-06 39.0 9.4 92 243-353 14-105 (119)
129 PRK10803 tol-pal system protei 94.8 0.29 6.3E-06 46.1 10.5 66 277-353 181-246 (263)
130 KOG1785 Tyrosine kinase negati 94.7 0.014 3E-07 56.4 1.4 42 90-132 370-417 (563)
131 PF13432 TPR_16: Tetratricopep 94.7 0.027 5.8E-07 40.5 2.7 55 330-392 3-57 (65)
132 KOG4185 Predicted E3 ubiquitin 94.7 0.16 3.5E-06 48.6 8.8 57 90-146 4-77 (296)
133 KOG1126 DNA-binding cell divis 94.6 0.14 3.1E-06 52.9 8.5 90 277-389 524-614 (638)
134 PF12862 Apc5: Anaphase-promot 94.4 0.29 6.3E-06 38.3 8.1 70 288-362 10-79 (94)
135 PRK10370 formate-dependent nit 94.4 0.18 3.9E-06 45.3 7.8 97 232-353 74-173 (198)
136 PF13181 TPR_8: Tetratricopept 94.3 0.12 2.5E-06 31.8 4.6 30 325-354 2-31 (34)
137 PF09976 TPR_21: Tetratricopep 94.2 0.16 3.5E-06 43.0 6.8 95 278-392 50-144 (145)
138 PF07719 TPR_2: Tetratricopept 94.2 0.14 2.9E-06 31.4 4.7 29 325-353 2-30 (34)
139 KOG4234 TPR repeat-containing 94.1 0.41 9E-06 42.9 9.2 70 273-351 92-161 (271)
140 PF12895 Apc3: Anaphase-promot 94.1 0.59 1.3E-05 35.4 9.2 83 244-350 2-84 (84)
141 PRK10803 tol-pal system protei 94.1 0.31 6.8E-06 45.9 9.0 95 281-391 148-242 (263)
142 PF00515 TPR_1: Tetratricopept 94.0 0.16 3.5E-06 31.2 4.8 30 277-306 2-31 (34)
143 KOG1645 RING-finger-containing 93.8 0.037 8.1E-07 53.8 2.2 50 90-139 5-66 (463)
144 PF09976 TPR_21: Tetratricopep 93.7 0.48 1E-05 40.0 8.8 89 240-351 57-145 (145)
145 PF10952 DUF2753: Protein of u 93.7 1.8 3.8E-05 35.7 11.3 105 279-383 4-114 (140)
146 PF13371 TPR_9: Tetratricopept 93.6 0.26 5.7E-06 35.9 6.1 56 283-352 2-57 (73)
147 KOG1734 Predicted RING-contain 93.5 0.068 1.5E-06 49.3 3.2 45 88-132 223-282 (328)
148 KOG4692 Predicted E3 ubiquitin 93.4 0.042 9.2E-07 52.4 1.9 51 80-131 413-467 (489)
149 KOG1155 Anaphase-promoting com 93.3 0.68 1.5E-05 46.4 10.0 121 245-391 344-491 (559)
150 KOG1586 Protein required for f 93.3 1.2 2.5E-05 41.0 10.7 18 340-357 163-180 (288)
151 KOG2002 TPR-containing nuclear 93.3 0.84 1.8E-05 49.4 11.4 101 278-390 416-520 (1018)
152 KOG4275 Predicted E3 ubiquitin 93.2 0.013 2.7E-07 54.5 -1.9 41 89-130 300-341 (350)
153 KOG4739 Uncharacterized protei 93.2 0.059 1.3E-06 49.2 2.4 58 90-147 4-64 (233)
154 KOG4555 TPR repeat-containing 93.2 0.54 1.2E-05 39.3 7.7 62 278-353 45-106 (175)
155 PF07719 TPR_2: Tetratricopept 93.0 0.3 6.5E-06 29.8 4.8 29 277-305 2-30 (34)
156 PF13429 TPR_15: Tetratricopep 92.8 0.33 7.1E-06 45.8 7.0 63 279-355 217-279 (280)
157 KOG0548 Molecular co-chaperone 92.7 0.52 1.1E-05 47.8 8.4 93 274-372 296-400 (539)
158 PF06552 TOM20_plant: Plant sp 92.6 0.75 1.6E-05 40.5 8.3 74 295-372 3-77 (186)
159 KOG1155 Anaphase-promoting com 92.6 0.89 1.9E-05 45.6 9.6 106 227-357 394-499 (559)
160 PF13181 TPR_8: Tetratricopept 92.5 0.36 7.9E-06 29.5 4.7 31 277-307 2-32 (34)
161 cd05804 StaR_like StaR_like; a 92.1 0.27 5.9E-06 47.7 5.7 97 276-391 114-211 (355)
162 PF05290 Baculo_IE-1: Baculovi 92.0 0.1 2.2E-06 43.1 2.0 44 89-132 80-133 (140)
163 PLN03098 LPA1 LOW PSII ACCUMUL 91.9 0.2 4.4E-06 50.2 4.4 63 322-392 73-138 (453)
164 PF04641 Rtf2: Rtf2 RING-finge 91.8 0.28 6.1E-06 46.1 5.2 46 87-132 111-162 (260)
165 KOG0548 Molecular co-chaperone 91.7 1.3 2.8E-05 45.0 9.8 131 240-392 307-452 (539)
166 PF09986 DUF2225: Uncharacteri 91.5 5.3 0.00012 36.4 13.0 99 248-351 94-192 (214)
167 PF10516 SHNi-TPR: SHNi-TPR; 91.4 0.44 9.6E-06 30.7 4.2 33 325-357 2-34 (38)
168 KOG0547 Translocase of outer m 91.4 0.61 1.3E-05 47.0 7.0 92 272-385 111-202 (606)
169 PF12968 DUF3856: Domain of Un 91.3 2.7 5.8E-05 34.6 9.4 102 289-392 22-126 (144)
170 KOG2932 E3 ubiquitin ligase in 91.2 0.12 2.5E-06 48.7 1.7 43 89-131 90-134 (389)
171 KOG1586 Protein required for f 91.1 1.2 2.6E-05 40.9 8.1 26 324-349 93-118 (288)
172 PRK14574 hmsH outer membrane p 91.1 1.2 2.6E-05 48.8 9.6 15 243-257 46-60 (822)
173 KOG0547 Translocase of outer m 91.0 1.3 2.8E-05 44.8 8.9 104 232-357 463-570 (606)
174 KOG3039 Uncharacterized conser 90.5 0.16 3.5E-06 46.2 2.0 44 89-132 221-271 (303)
175 PF11793 FANCL_C: FANCL C-term 90.5 0.043 9.3E-07 40.7 -1.4 43 89-131 2-66 (70)
176 cd02682 MIT_AAA_Arch MIT: doma 90.1 1.3 2.9E-05 33.1 6.3 43 322-364 4-47 (75)
177 PF10516 SHNi-TPR: SHNi-TPR; 89.9 0.78 1.7E-05 29.6 4.3 34 277-310 2-35 (38)
178 KOG1001 Helicase-like transcri 89.9 0.13 2.9E-06 54.5 1.2 39 90-130 455-499 (674)
179 KOG1129 TPR repeat-containing 89.8 1.1 2.3E-05 43.2 6.9 27 279-305 226-252 (478)
180 KOG3617 WD40 and TPR repeat-co 89.6 3.5 7.6E-05 44.3 11.0 158 193-357 810-1000(1416)
181 PF12862 Apc5: Anaphase-promot 89.5 4.1 8.8E-05 31.7 9.1 82 243-334 10-91 (94)
182 PRK10049 pgaA outer membrane p 89.4 2.2 4.7E-05 46.6 10.1 56 327-390 119-174 (765)
183 PRK10049 pgaA outer membrane p 89.3 1.7 3.7E-05 47.4 9.2 54 281-348 121-174 (765)
184 TIGR00540 hemY_coli hemY prote 89.3 1.4 3E-05 44.2 8.0 68 278-358 337-404 (409)
185 KOG2002 TPR-containing nuclear 89.0 4 8.7E-05 44.5 11.2 108 234-357 683-795 (1018)
186 KOG3161 Predicted E3 ubiquitin 88.9 0.23 4.9E-06 51.2 1.9 40 88-128 10-54 (861)
187 COG5236 Uncharacterized conser 88.9 0.51 1.1E-05 45.1 4.0 44 87-131 59-108 (493)
188 COG5010 TadD Flp pilus assembl 88.8 4.1 8.8E-05 37.9 9.7 61 277-351 135-195 (257)
189 PRK14720 transcript cleavage f 88.7 2.8 6E-05 46.1 10.0 59 325-392 117-175 (906)
190 PF13428 TPR_14: Tetratricopep 88.6 1.5 3.3E-05 28.8 5.2 40 326-371 3-42 (44)
191 COG5010 TadD Flp pilus assembl 88.5 1.2 2.6E-05 41.3 6.2 88 278-387 102-189 (257)
192 KOG1814 Predicted E3 ubiquitin 88.5 0.32 7E-06 47.6 2.5 33 88-120 183-217 (445)
193 COG3071 HemY Uncharacterized e 88.4 9 0.00019 37.8 12.3 63 277-354 329-391 (400)
194 PF12688 TPR_5: Tetratrico pep 88.2 4.3 9.4E-05 33.4 8.8 90 243-351 13-102 (120)
195 COG1729 Uncharacterized protei 88.2 2.4 5.1E-05 39.7 7.9 69 275-354 177-245 (262)
196 TIGR00540 hemY_coli hemY prote 88.1 3.3 7.2E-05 41.5 9.7 106 280-392 267-396 (409)
197 PF13371 TPR_9: Tetratricopept 88.1 0.49 1.1E-05 34.5 2.8 53 331-391 2-54 (73)
198 KOG2076 RNA polymerase III tra 87.9 3.7 8.1E-05 44.3 10.0 91 190-305 146-236 (895)
199 KOG3002 Zn finger protein [Gen 87.9 0.57 1.2E-05 44.8 3.7 62 85-147 44-106 (299)
200 COG2956 Predicted N-acetylgluc 87.7 6.5 0.00014 37.9 10.6 13 195-207 81-93 (389)
201 KOG1585 Protein required for f 87.6 9.3 0.0002 35.5 11.1 68 281-357 76-143 (308)
202 cd05804 StaR_like StaR_like; a 87.3 2.1 4.5E-05 41.5 7.5 91 240-351 123-213 (355)
203 KOG1571 Predicted E3 ubiquitin 87.1 0.29 6.4E-06 47.2 1.3 44 88-132 304-348 (355)
204 KOG0827 Predicted E3 ubiquitin 87.1 0.31 6.7E-06 47.3 1.5 41 90-130 5-55 (465)
205 KOG0828 Predicted E3 ubiquitin 87.0 0.37 7.9E-06 48.2 2.0 44 88-131 570-634 (636)
206 PF14570 zf-RING_4: RING/Ubox 86.9 0.59 1.3E-05 31.7 2.3 39 92-130 1-47 (48)
207 PRK10153 DNA-binding transcrip 86.1 2.2 4.8E-05 44.3 7.2 58 279-351 423-480 (517)
208 KOG3617 WD40 and TPR repeat-co 85.9 5.6 0.00012 42.9 9.9 108 283-391 865-992 (1416)
209 COG5219 Uncharacterized conser 85.8 0.32 6.8E-06 52.3 0.9 43 89-131 1469-1523(1525)
210 smart00744 RINGv The RING-vari 85.7 0.88 1.9E-05 31.1 2.8 37 91-127 1-49 (49)
211 PF06552 TOM20_plant: Plant sp 85.6 25 0.00054 31.1 14.1 95 277-374 26-124 (186)
212 KOG3800 Predicted E3 ubiquitin 85.2 0.77 1.7E-05 43.0 3.0 42 91-132 2-52 (300)
213 smart00028 TPR Tetratricopepti 85.1 1.2 2.7E-05 25.3 3.0 28 326-353 3-30 (34)
214 PLN02789 farnesyltranstransfer 84.9 4.1 9E-05 39.5 8.1 39 328-372 146-184 (320)
215 PRK14720 transcript cleavage f 84.9 3.3 7.2E-05 45.5 8.1 65 277-356 117-181 (906)
216 KOG0543 FKBP-type peptidyl-pro 84.8 13 0.00028 36.9 11.3 118 235-372 212-333 (397)
217 KOG0826 Predicted E3 ubiquitin 84.2 0.75 1.6E-05 43.8 2.5 42 88-130 299-345 (357)
218 PF09986 DUF2225: Uncharacteri 84.0 10 0.00023 34.5 9.9 93 290-391 91-190 (214)
219 KOG1493 Anaphase-promoting com 84.0 0.44 9.5E-06 35.4 0.7 42 90-131 32-81 (84)
220 PF04212 MIT: MIT (microtubule 83.9 3.9 8.3E-05 29.8 5.8 35 323-357 4-38 (69)
221 PRK14574 hmsH outer membrane p 83.9 16 0.00034 40.3 12.8 89 190-304 41-130 (822)
222 KOG2076 RNA polymerase III tra 83.6 5.1 0.00011 43.3 8.5 90 277-387 415-504 (895)
223 PRK10747 putative protoheme IX 83.5 4.1 8.9E-05 40.7 7.7 62 278-354 330-391 (398)
224 KOG1839 Uncharacterized protei 83.1 2.4 5.3E-05 47.5 6.2 115 270-392 967-1083(1236)
225 PF03704 BTAD: Bacterial trans 82.8 4.1 8.9E-05 34.1 6.4 98 286-391 16-121 (146)
226 PF14559 TPR_19: Tetratricopep 82.2 3.7 8.1E-05 29.1 5.2 50 288-351 3-52 (68)
227 COG4783 Putative Zn-dependent 82.0 34 0.00074 34.8 13.1 117 213-354 329-455 (484)
228 PF14559 TPR_19: Tetratricopep 81.3 1.6 3.5E-05 31.1 2.9 48 336-391 3-50 (68)
229 PF02891 zf-MIZ: MIZ/SP-RING z 81.1 0.42 9.1E-06 32.9 -0.3 40 90-129 3-50 (50)
230 PF10602 RPN7: 26S proteasome 80.9 21 0.00045 31.4 10.3 76 271-357 31-106 (177)
231 PF13174 TPR_6: Tetratricopept 80.8 3 6.6E-05 24.8 3.6 27 326-352 2-28 (33)
232 PF07800 DUF1644: Protein of u 79.7 1.2 2.6E-05 38.1 1.9 20 89-109 2-21 (162)
233 KOG1585 Protein required for f 79.7 13 0.00029 34.5 8.7 35 323-357 90-124 (308)
234 KOG2817 Predicted E3 ubiquitin 79.6 1.2 2.6E-05 43.6 2.2 41 89-129 334-383 (394)
235 KOG4362 Transcriptional regula 79.0 0.71 1.5E-05 48.5 0.4 43 89-132 21-70 (684)
236 KOG1174 Anaphase-promoting com 78.9 4.3 9.3E-05 40.4 5.6 59 279-352 441-499 (564)
237 PF13525 YfiO: Outer membrane 78.6 39 0.00085 30.1 11.7 152 186-356 8-173 (203)
238 PF08631 SPO22: Meiosis protei 78.5 60 0.0013 30.6 14.5 108 243-357 5-113 (278)
239 PF13428 TPR_14: Tetratricopep 78.4 5.5 0.00012 26.0 4.5 28 278-305 3-30 (44)
240 KOG1812 Predicted E3 ubiquitin 78.4 2 4.2E-05 42.8 3.3 59 89-148 146-224 (384)
241 KOG3970 Predicted E3 ubiquitin 78.2 3.3 7E-05 37.4 4.2 43 90-132 51-106 (299)
242 KOG3616 Selective LIM binding 78.0 7.9 0.00017 41.2 7.5 69 279-357 664-739 (1636)
243 PF07191 zinc-ribbons_6: zinc- 77.9 0.27 5.9E-06 36.1 -2.1 40 89-133 1-43 (70)
244 PHA03096 p28-like protein; Pro 77.8 1.1 2.5E-05 42.5 1.4 32 90-121 179-217 (284)
245 cd02683 MIT_1 MIT: domain cont 77.6 7.9 0.00017 29.1 5.7 38 324-361 6-44 (77)
246 smart00028 TPR Tetratricopepti 77.6 4.2 9E-05 22.8 3.5 28 278-305 3-30 (34)
247 KOG1129 TPR repeat-containing 76.9 4.8 0.0001 38.9 5.2 92 240-353 367-458 (478)
248 COG2956 Predicted N-acetylgluc 76.9 19 0.00042 34.8 9.2 52 330-388 220-271 (389)
249 PRK10747 putative protoheme IX 75.9 11 0.00024 37.6 7.9 86 283-389 125-210 (398)
250 PLN03218 maturation of RBCL 1; 75.9 20 0.00043 40.7 10.6 14 194-207 553-566 (1060)
251 PRK15331 chaperone protein Sic 75.6 41 0.00089 29.3 10.2 105 243-381 49-153 (165)
252 PF13174 TPR_6: Tetratricopept 75.1 5.6 0.00012 23.6 3.6 27 278-304 2-28 (33)
253 cd02656 MIT MIT: domain contai 75.0 19 0.00041 26.6 7.1 34 324-357 6-39 (75)
254 PF03704 BTAD: Bacterial trans 74.9 33 0.00071 28.5 9.6 77 272-362 58-135 (146)
255 KOG1100 Predicted E3 ubiquitin 74.5 1.1 2.4E-05 40.6 0.3 40 92-132 161-201 (207)
256 KOG1952 Transcription factor N 73.8 6.5 0.00014 42.3 5.7 45 87-131 189-247 (950)
257 KOG4445 Uncharacterized conser 73.7 0.93 2E-05 42.6 -0.4 31 90-120 116-148 (368)
258 KOG1174 Anaphase-promoting com 73.6 31 0.00068 34.5 9.9 28 230-257 333-360 (564)
259 PF09295 ChAPs: ChAPs (Chs5p-A 73.5 23 0.0005 35.4 9.4 55 324-386 234-288 (395)
260 cd02681 MIT_calpain7_1 MIT: do 72.3 16 0.00034 27.5 6.0 34 324-357 6-39 (76)
261 COG4235 Cytochrome c biogenesi 72.0 18 0.00039 34.4 7.7 67 278-351 158-254 (287)
262 KOG4340 Uncharacterized conser 71.3 2.8 6E-05 39.9 2.2 29 324-352 144-172 (459)
263 smart00101 14_3_3 14-3-3 homol 71.3 79 0.0017 29.4 11.7 75 292-371 144-224 (244)
264 PF12569 NARP1: NMDA receptor- 71.2 1.2E+02 0.0026 31.6 14.2 131 195-357 206-338 (517)
265 KOG0545 Aryl-hydrocarbon recep 71.1 12 0.00025 34.9 6.0 44 327-370 181-226 (329)
266 KOG3039 Uncharacterized conser 71.0 1.8 3.9E-05 39.6 0.8 31 89-120 43-73 (303)
267 KOG2114 Vacuolar assembly/sort 71.0 2.8 6E-05 45.0 2.3 43 88-130 839-882 (933)
268 PRK10866 outer membrane biogen 70.6 39 0.00084 31.3 9.7 77 281-371 37-113 (243)
269 KOG4555 TPR repeat-containing 70.5 20 0.00044 30.1 6.7 107 243-370 55-167 (175)
270 PF08631 SPO22: Meiosis protei 70.1 41 0.0009 31.7 10.0 64 287-356 4-68 (278)
271 KOG3060 Uncharacterized conser 70.1 28 0.00061 32.6 8.3 56 328-391 158-216 (289)
272 COG2976 Uncharacterized protei 69.6 47 0.001 29.8 9.3 61 278-354 128-189 (207)
273 COG5194 APC11 Component of SCF 68.6 3.2 6.9E-05 31.2 1.5 25 107-131 53-81 (88)
274 COG5220 TFB3 Cdk activating ki 68.5 2.2 4.7E-05 38.9 0.8 44 88-131 9-64 (314)
275 smart00745 MIT Microtubule Int 68.1 36 0.00079 25.1 7.4 38 324-361 8-46 (77)
276 KOG4234 TPR repeat-containing 67.9 40 0.00087 30.6 8.5 92 243-354 107-198 (271)
277 KOG0550 Molecular chaperone (D 67.8 10 0.00022 37.8 5.2 66 278-353 251-316 (486)
278 COG5175 MOT2 Transcriptional r 66.9 4.6 0.0001 38.7 2.6 44 89-132 14-65 (480)
279 KOG3579 Predicted E3 ubiquitin 66.6 7.5 0.00016 36.5 3.9 34 86-120 265-302 (352)
280 PRK10153 DNA-binding transcrip 66.2 41 0.00089 35.0 9.7 57 327-392 423-479 (517)
281 cd02678 MIT_VPS4 MIT: domain c 66.2 35 0.00076 25.3 6.9 38 324-361 6-44 (75)
282 KOG4162 Predicted calmodulin-b 66.0 35 0.00076 36.6 9.0 81 275-355 683-785 (799)
283 PF05883 Baculo_RING: Baculovi 64.3 3.7 7.9E-05 34.3 1.3 32 89-120 26-65 (134)
284 COG2178 Predicted RNA-binding 64.0 35 0.00075 30.5 7.3 57 327-389 32-92 (204)
285 cd02680 MIT_calpain7_2 MIT: do 63.9 38 0.00081 25.4 6.5 34 324-357 6-39 (75)
286 PF04100 Vps53_N: Vps53-like, 63.7 86 0.0019 31.3 11.1 98 263-372 68-168 (383)
287 KOG0298 DEAD box-containing he 63.5 2.5 5.3E-05 47.4 0.2 45 88-132 1152-1200(1394)
288 cd02684 MIT_2 MIT: domain cont 63.0 35 0.00075 25.4 6.3 34 324-357 6-39 (75)
289 PF13431 TPR_17: Tetratricopep 62.1 13 0.00028 22.9 3.3 21 324-344 13-33 (34)
290 PLN03218 maturation of RBCL 1; 61.8 50 0.0011 37.6 10.0 59 279-350 687-745 (1060)
291 PLN02789 farnesyltranstransfer 61.3 38 0.00082 32.8 8.0 127 244-392 33-168 (320)
292 KOG2114 Vacuolar assembly/sort 61.3 20 0.00044 38.8 6.3 112 273-391 365-515 (933)
293 cd02679 MIT_spastin MIT: domai 61.2 24 0.00052 26.7 5.1 36 322-357 6-41 (79)
294 KOG4648 Uncharacterized conser 60.5 40 0.00087 33.0 7.6 93 279-371 100-206 (536)
295 PF11817 Foie-gras_1: Foie gra 60.4 1.4E+02 0.0031 27.5 12.3 89 246-347 152-241 (247)
296 PLN03077 Protein ECB2; Provisi 60.2 1.1E+02 0.0023 33.9 12.2 21 280-300 428-448 (857)
297 COG1729 Uncharacterized protei 60.1 27 0.00057 32.8 6.3 90 286-391 151-240 (262)
298 PF13525 YfiO: Outer membrane 59.5 88 0.0019 27.8 9.6 81 277-371 6-86 (203)
299 PF07721 TPR_4: Tetratricopept 59.2 13 0.00028 21.3 2.7 24 326-349 3-26 (26)
300 PF09295 ChAPs: ChAPs (Chs5p-A 58.8 25 0.00053 35.2 6.3 55 330-392 206-260 (395)
301 COG5109 Uncharacterized conser 58.7 5.4 0.00012 38.0 1.5 40 89-128 336-384 (396)
302 KOG2376 Signal recognition par 58.7 1.1E+02 0.0025 32.0 10.9 72 283-357 117-208 (652)
303 KOG0550 Molecular chaperone (D 58.1 39 0.00085 33.8 7.3 70 272-355 283-352 (486)
304 KOG1118 Lysophosphatidic acid 58.0 30 0.00064 33.1 6.2 55 291-357 177-231 (366)
305 KOG2034 Vacuolar sorting prote 58.0 4.3 9.4E-05 43.8 0.8 32 89-120 817-849 (911)
306 KOG1940 Zn-finger protein [Gen 57.1 7.6 0.00016 36.6 2.2 40 89-128 158-204 (276)
307 KOG2930 SCF ubiquitin ligase, 56.9 8.4 0.00018 30.5 2.0 23 107-129 80-106 (114)
308 COG4700 Uncharacterized protei 56.4 86 0.0019 28.2 8.4 89 243-353 101-189 (251)
309 KOG3616 Selective LIM binding 55.2 32 0.00069 37.0 6.4 109 280-390 606-730 (1636)
310 PF10579 Rapsyn_N: Rapsyn N-te 55.0 65 0.0014 24.4 6.4 60 288-358 18-77 (80)
311 PF10367 Vps39_2: Vacuolar sor 54.9 3.9 8.4E-05 32.4 -0.1 31 88-118 77-108 (109)
312 KOG1127 TPR repeat-containing 54.7 72 0.0016 35.6 9.1 95 278-379 632-727 (1238)
313 KOG2796 Uncharacterized conser 54.4 1.7E+02 0.0036 27.8 10.3 58 294-357 188-245 (366)
314 PLN03077 Protein ECB2; Provisi 53.8 87 0.0019 34.6 10.2 53 285-349 598-650 (857)
315 KOG1127 TPR repeat-containing 52.7 88 0.0019 34.9 9.4 121 243-390 574-695 (1238)
316 KOG0624 dsRNA-activated protei 52.7 2.4E+02 0.0052 27.8 16.0 26 261-286 215-240 (504)
317 COG4783 Putative Zn-dependent 51.2 66 0.0014 32.8 7.8 82 278-381 342-423 (484)
318 KOG1156 N-terminal acetyltrans 50.7 47 0.001 35.0 6.8 68 226-305 36-104 (700)
319 COG2976 Uncharacterized protei 49.8 93 0.002 28.0 7.7 19 329-347 131-149 (207)
320 KOG1815 Predicted E3 ubiquitin 48.8 11 0.00023 38.4 1.9 33 88-120 69-101 (444)
321 PF10272 Tmpp129: Putative tra 48.5 10 0.00022 37.3 1.6 25 108-132 311-352 (358)
322 KOG3268 Predicted E3 ubiquitin 47.5 15 0.00033 32.0 2.4 43 90-132 166-229 (234)
323 PF13512 TPR_18: Tetratricopep 47.2 1.4E+02 0.003 25.3 8.1 28 277-304 48-75 (142)
324 cd02677 MIT_SNX15 MIT: domain 47.1 54 0.0012 24.4 5.1 34 324-357 6-39 (75)
325 PF03833 PolC_DP2: DNA polymer 46.1 6.7 0.00015 42.4 0.0 61 85-146 651-719 (900)
326 COG0457 NrfG FOG: TPR repeat [ 46.0 44 0.00096 27.9 5.2 61 285-356 139-199 (291)
327 PF02561 FliS: Flagellar prote 45.5 1.2E+02 0.0026 24.6 7.4 51 331-383 36-89 (122)
328 PLN03081 pentatricopeptide (PP 45.3 1E+02 0.0022 33.2 8.9 18 241-258 401-418 (697)
329 PHA02825 LAP/PHD finger-like p 45.0 21 0.00046 30.7 2.8 44 87-132 6-60 (162)
330 PRK10866 outer membrane biogen 44.8 2.5E+02 0.0055 25.8 10.9 69 268-347 167-235 (243)
331 KOG1839 Uncharacterized protei 44.0 1E+02 0.0022 35.3 8.5 80 272-357 1053-1132(1236)
332 KOG0545 Aryl-hydrocarbon recep 43.5 1.6E+02 0.0035 27.7 8.4 72 277-348 179-254 (329)
333 KOG2796 Uncharacterized conser 43.0 1.1E+02 0.0023 29.1 7.2 25 278-302 214-238 (366)
334 PF00244 14-3-3: 14-3-3 protei 42.2 1.1E+02 0.0024 28.2 7.4 60 292-356 142-201 (236)
335 PRK15331 chaperone protein Sic 42.1 27 0.00058 30.4 3.1 56 327-390 40-95 (165)
336 PF05600 DUF773: Protein of un 41.8 2.8E+02 0.006 28.9 10.9 119 235-355 84-215 (507)
337 PRK04023 DNA polymerase II lar 41.8 22 0.00047 39.4 2.9 46 86-132 623-675 (1121)
338 PF12309 KBP_C: KIF-1 binding 41.4 3.3E+02 0.0072 27.0 11.1 16 198-213 139-154 (371)
339 PF10571 UPF0547: Uncharacteri 40.9 13 0.00028 21.8 0.6 7 92-98 3-9 (26)
340 KOG2169 Zn-finger transcriptio 40.7 20 0.00042 38.3 2.5 60 89-148 306-375 (636)
341 PRK05685 fliS flagellar protei 40.2 1.8E+02 0.0039 24.1 7.8 51 331-383 42-95 (132)
342 PF12968 DUF3856: Domain of Un 39.9 2.2E+02 0.0048 23.7 10.3 76 279-357 58-133 (144)
343 PF12063 DUF3543: Domain of un 39.4 3.1E+02 0.0068 25.3 11.5 39 319-357 160-199 (238)
344 KOG3842 Adaptor protein Pellin 39.3 20 0.00043 34.3 1.9 9 123-131 406-414 (429)
345 cd02682 MIT_AAA_Arch MIT: doma 39.2 1.6E+02 0.0035 22.0 8.1 33 285-317 15-47 (75)
346 PF02259 FAT: FAT domain; Int 38.9 2.8E+02 0.006 26.3 10.2 34 186-219 32-65 (352)
347 KOG3785 Uncharacterized conser 38.7 95 0.0021 30.6 6.5 75 289-385 35-110 (557)
348 smart00745 MIT Microtubule Int 38.6 1.6E+02 0.0034 21.6 7.3 28 287-314 19-46 (77)
349 KOG1128 Uncharacterized conser 38.4 30 0.00066 36.9 3.3 33 322-354 551-583 (777)
350 PF12569 NARP1: NMDA receptor- 37.7 98 0.0021 32.2 6.9 60 322-389 192-251 (517)
351 KOG2053 Mitochondrial inherita 37.7 1.4E+02 0.003 32.9 8.0 105 273-390 23-138 (932)
352 KOG3060 Uncharacterized conser 37.5 1.3E+02 0.0028 28.3 6.9 68 277-355 155-222 (289)
353 TIGR00622 ssl1 transcription f 37.3 34 0.00073 27.8 2.7 38 90-127 56-110 (112)
354 TIGR03504 FimV_Cterm FimV C-te 37.3 61 0.0013 21.5 3.6 23 329-351 4-26 (44)
355 COG1516 FliS Flagellin-specifi 37.0 1.5E+02 0.0033 24.8 6.6 58 322-381 29-89 (132)
356 KOG1464 COP9 signalosome, subu 36.9 2.5E+02 0.0055 26.7 8.7 59 248-313 44-102 (440)
357 PLN03081 pentatricopeptide (PP 36.9 2.8E+02 0.0061 29.8 10.6 27 277-303 291-317 (697)
358 COG3813 Uncharacterized protei 36.8 28 0.0006 25.7 1.9 30 109-138 28-61 (84)
359 PF06906 DUF1272: Protein of u 36.4 23 0.00049 24.9 1.4 22 110-131 29-52 (57)
360 PF07975 C1_4: TFIIH C1-like d 36.4 23 0.0005 24.4 1.5 24 104-127 23-50 (51)
361 KOG3899 Uncharacterized conser 36.3 17 0.00036 34.4 1.0 25 108-132 325-366 (381)
362 cd02677 MIT_SNX15 MIT: domain 36.3 1.8E+02 0.0039 21.6 6.6 29 287-315 17-45 (75)
363 PF15556 Zwint: ZW10 interacto 36.0 3.2E+02 0.0068 24.6 8.7 54 248-301 59-112 (252)
364 PF03491 5HT_transporter: Sero 35.4 29 0.00063 22.5 1.7 21 9-29 7-27 (42)
365 PHA02862 5L protein; Provision 35.3 27 0.00059 29.5 2.0 41 90-132 3-54 (156)
366 PF04781 DUF627: Protein of un 35.3 1.8E+02 0.004 23.5 6.7 83 299-388 12-100 (111)
367 KOG2041 WD40 repeat protein [G 35.1 2.9E+02 0.0062 30.0 9.6 32 272-303 792-823 (1189)
368 PF14853 Fis1_TPR_C: Fis1 C-te 34.8 69 0.0015 22.1 3.7 34 328-367 5-38 (53)
369 COG5499 Predicted transcriptio 34.5 2.5E+02 0.0054 22.7 7.7 47 297-343 12-58 (120)
370 KOG0551 Hsp90 co-chaperone CNS 34.0 1.1E+02 0.0023 30.0 5.9 64 272-345 77-140 (390)
371 cd02678 MIT_VPS4 MIT: domain c 33.8 1.9E+02 0.0042 21.2 7.2 31 285-315 15-45 (75)
372 COG0457 NrfG FOG: TPR repeat [ 33.2 2.7E+02 0.0059 22.8 8.8 93 243-356 142-234 (291)
373 cd07593 BAR_MUG137_fungi The B 33.0 1.7E+02 0.0037 26.6 7.0 16 342-357 189-204 (215)
374 PF12854 PPR_1: PPR repeat 32.8 99 0.0021 18.8 3.9 26 324-349 7-32 (34)
375 PF06844 DUF1244: Protein of u 32.7 20 0.00043 26.0 0.7 10 111-120 11-20 (68)
376 cd02684 MIT_2 MIT: domain cont 32.6 2.1E+02 0.0045 21.2 7.0 30 286-315 16-45 (75)
377 PRK10941 hypothetical protein; 32.5 3.5E+02 0.0075 25.5 9.2 66 272-351 177-242 (269)
378 cd07593 BAR_MUG137_fungi The B 31.7 1.4E+02 0.0031 27.2 6.2 18 340-357 151-168 (215)
379 cd00350 rubredoxin_like Rubred 31.7 39 0.00086 20.7 1.8 11 119-129 16-26 (33)
380 KOG0825 PHD Zn-finger protein 31.6 63 0.0014 34.9 4.3 44 89-132 96-155 (1134)
381 PF06600 DUF1140: Protein of u 31.5 44 0.00095 26.3 2.4 55 333-392 51-106 (107)
382 PF10345 Cohesin_load: Cohesin 31.3 3.7E+02 0.0081 28.4 10.3 100 289-390 314-428 (608)
383 KOG2908 26S proteasome regulat 31.2 5.2E+02 0.011 25.4 10.1 85 289-382 88-173 (380)
384 KOG2180 Late Golgi protein sor 30.9 5.4E+02 0.012 27.8 10.8 37 334-370 142-181 (793)
385 KOG1920 IkappaB kinase complex 30.8 8.9E+02 0.019 28.0 14.0 79 279-357 955-1046(1265)
386 cd09248 BRO1_Rhophilin_1 Prote 30.8 4E+02 0.0088 26.6 9.6 61 270-330 100-171 (384)
387 COG0068 HypF Hydrogenase matur 30.7 46 0.001 35.6 3.2 45 88-132 100-185 (750)
388 KOG1156 N-terminal acetyltrans 30.5 1E+02 0.0023 32.6 5.6 39 334-372 78-117 (700)
389 cd09239 BRO1_HD-PTP_like Prote 30.2 4.1E+02 0.0088 26.2 9.7 87 271-357 109-224 (361)
390 PF04733 Coatomer_E: Coatomer 29.8 77 0.0017 30.2 4.4 43 324-372 201-243 (290)
391 KOG2300 Uncharacterized conser 29.7 2.4E+02 0.0052 29.1 7.8 75 283-365 452-526 (629)
392 PF11817 Foie-gras_1: Foie gra 29.6 1.6E+02 0.0034 27.2 6.4 29 329-357 183-211 (247)
393 KOG1428 Inhibitor of type V ad 29.6 64 0.0014 37.6 4.1 45 88-132 3485-3545(3738)
394 PF10235 Cript: Microtubule-as 29.4 23 0.00049 27.5 0.5 36 90-131 45-80 (90)
395 TIGR00208 fliS flagellar biosy 29.1 3.2E+02 0.007 22.4 7.7 51 331-383 38-91 (124)
396 PF08969 USP8_dimer: USP8 dime 29.0 1.1E+02 0.0025 24.5 4.7 42 322-363 36-77 (115)
397 KOG2008 BTK-associated SH3-dom 28.9 1.5E+02 0.0034 28.4 6.0 9 292-300 65-73 (426)
398 COG4235 Cytochrome c biogenesi 28.5 2.5E+02 0.0054 26.8 7.4 28 326-353 158-185 (287)
399 PF04910 Tcf25: Transcriptiona 28.4 3.3E+02 0.007 26.9 8.6 60 291-357 9-73 (360)
400 KOG1128 Uncharacterized conser 28.4 3.5E+02 0.0076 29.3 9.0 37 330-372 525-561 (777)
401 cd02656 MIT MIT: domain contai 28.3 2.4E+02 0.0051 20.5 7.1 32 284-315 14-45 (75)
402 PF15469 Sec5: Exocyst complex 28.3 98 0.0021 27.0 4.5 69 288-357 98-168 (182)
403 PF14561 TPR_20: Tetratricopep 28.2 1.8E+02 0.0038 22.4 5.4 38 306-350 11-48 (90)
404 KOG2471 TPR repeat-containing 28.1 88 0.0019 32.2 4.5 113 242-356 251-367 (696)
405 PF10497 zf-4CXXC_R1: Zinc-fin 27.9 38 0.00082 27.1 1.6 20 109-128 37-69 (105)
406 KOG0624 dsRNA-activated protei 27.8 2.3E+02 0.0051 27.9 7.1 30 275-304 105-134 (504)
407 PF10602 RPN7: 26S proteasome 27.7 2.4E+02 0.0053 24.6 6.9 32 322-353 34-65 (177)
408 COG5242 TFB4 RNA polymerase II 27.5 29 0.00064 31.6 1.0 18 88-106 259-276 (296)
409 COG1283 NptA Na+/phosphate sym 27.2 2E+02 0.0042 30.1 6.9 25 315-339 400-424 (533)
410 KOG0994 Extracellular matrix g 27.0 1.6E+02 0.0035 33.5 6.5 63 288-357 1537-1599(1758)
411 PRK15326 type III secretion sy 26.9 2.9E+02 0.0062 21.0 6.6 55 291-345 15-69 (80)
412 PF00244 14-3-3: 14-3-3 protei 26.3 5.1E+02 0.011 23.7 9.3 50 341-391 143-194 (236)
413 PLN03223 Polycystin cation cha 26.3 3.9E+02 0.0084 31.3 9.3 86 272-357 777-870 (1634)
414 PF10952 DUF2753: Protein of u 26.2 1.5E+02 0.0034 24.6 4.8 30 328-357 5-34 (140)
415 KOG3113 Uncharacterized conser 26.1 58 0.0013 30.3 2.6 45 88-132 110-159 (293)
416 PF12805 FUSC-like: FUSC-like 26.0 5.2E+02 0.011 24.2 9.4 44 339-385 240-283 (284)
417 PF04212 MIT: MIT (microtubule 25.5 2.5E+02 0.0055 20.0 9.0 32 283-314 12-43 (69)
418 PF08746 zf-RING-like: RING-li 25.2 51 0.0011 21.7 1.6 35 92-126 1-43 (43)
419 KOG4814 Uncharacterized conser 24.9 3.6E+02 0.0079 28.9 8.3 23 329-351 399-421 (872)
420 TIGR00996 Mtu_fam_mce virulenc 24.6 5.8E+02 0.013 23.8 11.8 32 341-372 233-266 (291)
421 COG2909 MalT ATP-dependent tra 24.5 7.7E+02 0.017 27.4 10.9 64 285-357 467-530 (894)
422 COG4700 Uncharacterized protei 24.5 1.1E+02 0.0023 27.6 3.9 22 330-351 95-116 (251)
423 cd02683 MIT_1 MIT: domain cont 24.4 3E+02 0.0066 20.5 9.6 31 285-315 15-45 (77)
424 PF13281 DUF4071: Domain of un 24.3 6.5E+02 0.014 25.0 9.8 62 291-352 241-333 (374)
425 KOG3876 Arfaptin and related p 24.3 3.5E+02 0.0077 25.4 7.3 20 338-357 257-276 (341)
426 COG1194 MutY A/G-specific DNA 24.2 3.3E+02 0.0071 26.7 7.5 73 280-365 37-113 (342)
427 PF09304 Cortex-I_coil: Cortex 24.1 3.8E+02 0.0083 21.5 7.7 46 263-308 6-51 (107)
428 cd09241 BRO1_ScRim20-like Prot 24.1 5.9E+02 0.013 24.9 9.6 84 272-355 102-215 (355)
429 KOG0006 E3 ubiquitin-protein l 24.1 51 0.0011 31.6 1.9 17 108-124 342-360 (446)
430 KOG2807 RNA polymerase II tran 23.8 45 0.00098 32.1 1.6 39 89-127 330-374 (378)
431 PRK11088 rrmA 23S rRNA methylt 23.8 33 0.00072 32.1 0.7 23 90-112 3-27 (272)
432 cd07639 BAR_ACAP1 The Bin/Amph 23.6 3.9E+02 0.0084 24.1 7.4 31 276-306 94-124 (200)
433 KOG2047 mRNA splicing factor [ 23.6 2.5E+02 0.0053 30.1 6.8 94 248-353 353-454 (835)
434 cd07617 BAR_Endophilin_B2 The 23.4 4E+02 0.0086 24.4 7.5 16 342-357 201-216 (220)
435 cd00065 FYVE FYVE domain; Zinc 23.4 39 0.00085 23.2 0.8 29 91-119 4-35 (57)
436 PRK10869 recombination and rep 23.0 8.9E+02 0.019 25.4 13.0 36 322-357 300-336 (553)
437 PRK14714 DNA polymerase II lar 23.0 66 0.0014 36.8 2.8 58 88-146 666-740 (1337)
438 KOG3726 Uncharacterized conser 22.7 41 0.00088 35.6 1.1 38 90-128 655-697 (717)
439 PF05605 zf-Di19: Drought indu 22.4 67 0.0015 22.0 1.9 32 89-128 2-39 (54)
440 PRK10869 recombination and rep 22.0 7.5E+02 0.016 26.0 10.4 34 323-356 246-279 (553)
441 PF04216 FdhE: Protein involve 21.9 18 0.0004 34.4 -1.5 40 89-129 172-220 (290)
442 KOG2053 Mitochondrial inherita 21.9 6.7E+02 0.014 27.9 9.8 77 298-390 24-101 (932)
443 PF06456 Arfaptin: Arfaptin-li 21.8 2.2E+02 0.0047 26.2 5.6 44 322-365 120-166 (229)
444 KOG0994 Extracellular matrix g 21.8 8.4E+02 0.018 28.2 10.6 13 337-349 1538-1550(1758)
445 smart00064 FYVE Protein presen 21.7 47 0.001 23.8 1.0 30 90-119 11-43 (68)
446 PF13041 PPR_2: PPR repeat fam 21.7 2.1E+02 0.0046 18.6 4.3 27 325-351 4-30 (50)
447 cd07606 BAR_SFC_plant The Bin/ 21.3 5.9E+02 0.013 22.9 8.2 32 275-306 95-126 (202)
448 PF04184 ST7: ST7 protein; In 21.3 2.3E+02 0.005 29.3 6.0 94 292-385 216-320 (539)
449 PF12753 Nro1: Nuclear pore co 21.3 2.9E+02 0.0064 27.6 6.6 60 294-357 329-388 (404)
450 KOG1915 Cell cycle control pro 21.1 6.7E+02 0.015 26.0 9.1 22 338-359 570-591 (677)
451 PF04423 Rad50_zn_hook: Rad50 21.0 70 0.0015 21.9 1.7 11 122-132 22-32 (54)
452 PF06160 EzrA: Septation ring 20.7 9.9E+02 0.021 25.1 11.1 32 322-353 514-545 (560)
453 PF15015 NYD-SP12_N: Spermatog 20.7 9.1E+02 0.02 24.6 10.3 82 269-351 170-255 (569)
454 PF03854 zf-P11: P-11 zinc fin 20.2 40 0.00087 22.8 0.3 30 102-131 12-46 (50)
455 KOG4648 Uncharacterized conser 20.2 1.5E+02 0.0034 29.1 4.3 40 327-372 100-139 (536)
456 cd07621 BAR_SNX5_6 The Bin/Amp 20.2 3.2E+02 0.007 25.0 6.3 34 272-305 37-70 (219)
457 COG4785 NlpI Lipoprotein NlpI, 20.0 1.5E+02 0.0033 27.3 4.0 75 277-371 66-140 (297)
No 1
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=6.9e-11 Score=119.53 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=156.9
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+..-+.+|+++.|...+..+...+..... ..++.....+.+|+..+..++++.+|+.+|++++.....+.+..
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~- 278 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSG------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED- 278 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccC------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-
Confidence 44467899999999999877766433222 13444455566788888889999999999999999988877744
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
+..++..+++|+.++...|++++|..+++++++|++........ +|+..|++++.++..++.+++|+.+|++
T Consensus 279 --h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~------~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 279 --HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP------EVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred --CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH------HHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45678999999999999999999999999999999985443333 7899999999999999999999999999
Q ss_pred HHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++|+... ..++-.+.+..+++. +|.+.++|.++.++|.+|
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~--l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAE--LYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHH--HHHHhcchhHHHHHHHHH
Confidence 99999987 777788899999999 999999999999999875
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.05 E-value=4.6e-11 Score=79.53 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=28.3
Q ss_pred ccccccccccCceecccCcHhHHHhHHhcCC--------CCCC
Q 016262 92 CMICQALLFECSKCTPCSHVYCKACISRFKD--------CPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~--------CP~C 126 (392)
|+||+++|. +|++++|||+||..||.++|. ||.|
T Consensus 1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 999999999999999998853 8876
No 3
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=4.2e-09 Score=106.67 Aligned_cols=148 Identities=18% Similarity=0.122 Sum_probs=129.1
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
+..+...|...|++..|++.++.+.+.+.+..+. -+..++..+++++.++..++++.+|+..|+++|+|++...+..
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~---~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL---KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc---cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3335557778899999999999998887776662 2556778888999999999999999999999999999988877
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.. .+|..|++|+.++...|++++|..++++|++|.+++ ..+++.+..+..+.. ++....++..++.|||.
T Consensus 279 h~------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~--~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 279 HP------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA--ILQSMNEYEEAKKLLQK 350 (508)
T ss_pred CH------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH--HHHHhcchhHHHHHHHH
Confidence 65 679999999999999999999999999999999998 888888888888888 88888889999988886
Q ss_pred C
Q 016262 392 A 392 (392)
Q Consensus 392 ~ 392 (392)
|
T Consensus 351 a 351 (508)
T KOG1840|consen 351 A 351 (508)
T ss_pred H
Confidence 4
No 4
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.85 E-value=2.2e-08 Score=75.95 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
..+...++++|.++..+|++++|+.+|++++++ .+.... ...+++.++.++|.++..+|++++|+.+|+++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGD------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTT------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457788999999999999999999999999999 444432 2236899999999999999999999999999999
Q ss_pred HHHH
Q 016262 353 RLES 356 (392)
Q Consensus 353 ile~ 356 (392)
|.++
T Consensus 75 i~~k 78 (78)
T PF13424_consen 75 IFEK 78 (78)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=3.5e-09 Score=103.64 Aligned_cols=63 Identities=30% Similarity=0.730 Sum_probs=55.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHHHHhhhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~~~ 151 (392)
..+.|+||+++|. .|++++|||+||..||..|+ .||.|+..+.. +..|..|.++|+.|....+
T Consensus 25 ~~l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 25 TSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred cccCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 5689999999988 99999999999999999874 49999998876 8899999999999875443
No 6
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.80 E-value=2.5e-09 Score=99.57 Aligned_cols=61 Identities=30% Similarity=0.729 Sum_probs=54.4
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
..|.|.||.+||. .|+++||+|+||..||..+. .||.|...++- +..|+.|.++|..|...
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHhHHHHHhc-CceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 4589999999999 99999999999999999884 59999998886 89999999999887643
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.79 E-value=4.5e-09 Score=76.60 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=48.8
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHH
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~ 145 (392)
++.|+||.+++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..+++.++.
T Consensus 1 ~~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 478999999988 89999999999999999884 59999998865 8888888877753
No 8
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.78 E-value=5.5e-09 Score=100.18 Aligned_cols=32 Identities=31% Similarity=0.697 Sum_probs=28.9
Q ss_pred cCceeccccccccccCceecccCcHhHHHhHHh
Q 016262 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISR 119 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~ 119 (392)
.+++.|+||..+++ +|++++|+|+.|..|...
T Consensus 2 eeelkc~vc~~f~~-epiil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR-EPIILPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhcc-CceEeecccHHHHHHHHh
Confidence 36799999999999 999999999999999743
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.72 E-value=7.8e-09 Score=90.74 Aligned_cols=44 Identities=32% Similarity=0.915 Sum_probs=39.3
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC--------------------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--------------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------------------~CP~C~~~~~~ 132 (392)
+++.|+||++.+. +|++++|||.||+.||..|. .||.|+..+..
T Consensus 17 ~~~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4689999999988 99999999999999999872 49999998875
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=8.9e-09 Score=94.61 Aligned_cols=44 Identities=30% Similarity=0.843 Sum_probs=39.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
...+|.+|++... +|..+||||.||+.||..|- +||+||..+..
T Consensus 238 a~~kC~LCLe~~~-~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 238 ATRKCSLCLENRS-NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCceEEEecCCC-CCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 4589999999977 99999999999999999993 59999987765
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.65 E-value=1.7e-08 Score=75.91 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=50.3
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
+.|.|||+..++. +|+++++||+|++.+|..|. .||.|+..+.. +.+|..|++.|+.|...
T Consensus 3 ~~f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 3 DEFLCPITGELMR-DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp GGGB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred cccCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 5699999999999 99999999999999999993 39999998887 99999999999999864
No 12
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.63 E-value=1.4e-07 Score=91.01 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=108.2
Q ss_pred hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 016262 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl 327 (392)
..|+.+|++.+++.+.+++... .-....+||+.|+-+|+++.|+-++++-|.|.++-.++..+ ....
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~a-----qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--------RRA~ 238 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLA-----QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--------RRAH 238 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHh-----hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--------HHhh
Confidence 4567777777777777766333 34578899999999999999999999999999987766554 4456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+|+|..+..+|+++-|+++|..++.+-.++..+...|..-..++. .|..++++++||.|++.
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgN--tytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGN--TYTLLKEVQKAITYHQR 300 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhh--HHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999777777777777887 89999999999999974
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.62 E-value=4.2e-08 Score=98.55 Aligned_cols=135 Identities=19% Similarity=0.334 Sum_probs=107.7
Q ss_pred HHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 225 ~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
++|+.|...+.+++.+.+.+|....|+.+|+.+++... .++...++|+.++.++|+|++|+..|.++|.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-----------~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-----------EFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-----------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 48999999999999999888888999999987766543 3566889999999999999999999999987
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhc
Q 016262 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLN 384 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~ 384 (392)
|.= ..|.+++|+|.++..+|+.+.|+..|++||.+ .|.-|....++++ .+.+-++...
T Consensus 417 I~P--------------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLas--i~kDsGni~~ 474 (966)
T KOG4626|consen 417 IKP--------------TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLAS--IYKDSGNIPE 474 (966)
T ss_pred cCc--------------hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHH--HhhccCCcHH
Confidence 632 24788899999999999999999999888844 4555555666666 6666666666
Q ss_pred cccchhcC
Q 016262 385 QLPKFRSA 392 (392)
Q Consensus 385 ~l~~~~~~ 392 (392)
||..|++|
T Consensus 475 AI~sY~~a 482 (966)
T KOG4626|consen 475 AIQSYRTA 482 (966)
T ss_pred HHHHHHHH
Confidence 66666653
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.9e-08 Score=89.88 Aligned_cols=44 Identities=32% Similarity=0.850 Sum_probs=39.7
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
..|.|.||++... +|+++.|||.|||-||.+|. .||.|+..+..
T Consensus 46 ~~FdCNICLd~ak-dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAK-DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccC-CCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 4699999999988 99999999999999999993 49999988775
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7e-08 Score=82.60 Aligned_cols=47 Identities=36% Similarity=0.804 Sum_probs=38.1
Q ss_pred ccCceeccccccccccC-ceecccCcHhHHHhHHhc----CCCCCCCcCCcc
Q 016262 86 KIGPLSCMICQALLFEC-SKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+...+.||||++-+... |+.+.|||.||+.||... ..||+|++.++.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 33569999999987743 577999999999999877 359999986553
No 16
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.5e-07 Score=89.86 Aligned_cols=61 Identities=28% Similarity=0.704 Sum_probs=52.4
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcccchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||+++|. .|++++|+|+||..|+..+| .||.|+.....+.+|..+.+++..+...
T Consensus 12 ~~~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 12 EELTCPICLEYFR-EPVLLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQL 76 (386)
T ss_pred ccccChhhHHHhh-cCccccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhc
Confidence 6799999999999 77999999999999999876 5999996223377899999999998754
No 17
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.54 E-value=3.4e-08 Score=70.34 Aligned_cols=54 Identities=28% Similarity=0.713 Sum_probs=29.6
Q ss_pred ceeccccccccccCce-ecccCcHhHHHhHHhc--CCCCCCCcCCcc--cchhhHHHHHH
Q 016262 89 PLSCMICQALLFECSK-CTPCSHVYCKACISRF--KDCPLCGADIEK--IEADTTLQDVV 143 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~--~~CP~C~~~~~~--~~~n~~l~~~~ 143 (392)
.+.|++|.+++. .|+ +..|.|.||+.||.+. ..||.|+.+... +..|+.|.+|+
T Consensus 7 lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence 578999999999 887 4789999999999887 459999987743 88999888775
No 18
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.52 E-value=3.2e-08 Score=64.84 Aligned_cols=34 Identities=44% Similarity=1.163 Sum_probs=28.4
Q ss_pred ccccccccccCc-eecccCcHhHHHhHHhc----CCCCCC
Q 016262 92 CMICQALLFECS-KCTPCSHVYCKACISRF----KDCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~----~~CP~C 126 (392)
|+||++.+. +| +.++|||+||+.||.+| ..||.|
T Consensus 1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc-CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999 67 78999999999999988 358876
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.42 E-value=7.8e-08 Score=66.69 Aligned_cols=43 Identities=35% Similarity=0.830 Sum_probs=36.8
Q ss_pred ceeccccccccccCceecccCcH-hHHHhHHhc----CCCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHV-YCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+..|.||++... +++.+||||. ||..|+.+| ..||.||.++..
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 468999999988 8999999999 999999999 579999998753
No 20
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.41 E-value=2.9e-06 Score=82.04 Aligned_cols=145 Identities=18% Similarity=0.154 Sum_probs=121.2
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
|.-+..+|..++.+|++..++...++.+++.++.+++-. ...+..+||+.+.-+|+++.|+.+|..++.+..++.
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg 269 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG 269 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence 556677888888999999999999999999999987433 346789999999999999999999999999988877
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
++..+ |.+--.||.+|..+..+++||.|+++-++|-++|+..-.....-+.++. .+.-|++..+||.|-.
T Consensus 270 ~r~vE--------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgn--a~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 270 NRTVE--------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGN--AFNALGEHRKALYFAE 339 (639)
T ss_pred chhHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHhhhhHHHHHHHHH
Confidence 66554 5555678899999999999999999999999999777677666666666 7778888888887654
No 21
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.39 E-value=1.4e-07 Score=86.25 Aligned_cols=58 Identities=26% Similarity=0.630 Sum_probs=50.4
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHHHH
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFI 147 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~~~ 147 (392)
.+.|-||..+|. .|..++|||+||..||.++. .||.|+....- +..+..+.++++.|.
T Consensus 25 ~lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 25 MLRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred HHHhhhhhheee-cceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 489999999999 99999999999999999884 49999998765 777888888877664
No 22
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.36 E-value=1.3e-07 Score=86.57 Aligned_cols=50 Identities=26% Similarity=0.735 Sum_probs=40.2
Q ss_pred CceeccccccccccCc-------eecccCcHhHHHhHHhcC----CCCCCCcCCcccchhh
Q 016262 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEKIEADT 137 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~ 137 (392)
.+..|+||++.+.+++ ++++|+|.||..||.+|. .||+||..+..+.+++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r 233 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSR 233 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence 4579999999877443 567899999999999994 5999999887755443
No 23
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.36 E-value=3.4e-07 Score=69.37 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++..+.++|.++..+|++++|+.+|++++++.+.+ ..++..+.+..+++. ++..++++..|+.+|++|
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~--~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGE--CYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH--HHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 688999999999999999999999999999996667 566677889999999 999999999999999975
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.31 E-value=4.9e-07 Score=60.88 Aligned_cols=38 Identities=32% Similarity=0.981 Sum_probs=33.0
Q ss_pred ecccccccc--ccCceecccCcHhHHHhHHhcC----CCCCCCc
Q 016262 91 SCMICQALL--FECSKCTPCSHVYCKACISRFK----DCPLCGA 128 (392)
Q Consensus 91 ~C~iC~~~~--~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~ 128 (392)
.|++|...+ ...+++++|||+||..|+..+. .||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999988 3379999999999999999887 6999974
No 25
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.30 E-value=1.6e-07 Score=63.30 Aligned_cols=37 Identities=35% Similarity=0.912 Sum_probs=31.4
Q ss_pred eccccccccc--cCceecccCcHhHHHhHHhc----CCCCCCC
Q 016262 91 SCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~ 127 (392)
.|+||++.+. +.++.++|+|.||..||.+| ..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999984 36888999999999999999 3599996
No 26
>PHA02926 zinc finger-like protein; Provisional
Probab=98.27 E-value=3.5e-07 Score=81.27 Aligned_cols=51 Identities=24% Similarity=0.752 Sum_probs=40.1
Q ss_pred CceeccccccccccC--------ceecccCcHhHHHhHHhcC----------CCCCCCcCCcccchhhH
Q 016262 88 GPLSCMICQALLFEC--------SKCTPCSHVYCKACISRFK----------DCPLCGADIEKIEADTT 138 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~--------p~~~~C~h~fC~~Ci~~~~----------~CP~C~~~~~~~~~n~~ 138 (392)
.+..|+||++...+. ++..+|+|+||..||..|. .||.||..+..+.+..+
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence 468999999986522 4567999999999999994 29999998877555443
No 27
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.27 E-value=3.3e-07 Score=60.63 Aligned_cols=34 Identities=35% Similarity=1.061 Sum_probs=29.9
Q ss_pred ccccccccccCce-ecccCcHhHHHhHHhcC------CCCCC
Q 016262 92 CMICQALLFECSK-CTPCSHVYCKACISRFK------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~~------~CP~C 126 (392)
|+||++.+. .++ +++|||.||..||..|+ .||.|
T Consensus 1 C~iC~~~~~-~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc-CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988 666 99999999999998884 38877
No 28
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.25 E-value=4.2e-07 Score=85.21 Aligned_cols=63 Identities=38% Similarity=0.887 Sum_probs=54.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc----CCCCCCCcCCcc------cchhhHHHHHHHHHHhhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~------~~~n~~l~~~~~~~~~~~ 150 (392)
....|.+|.+||.|.-.+..|.|+||+.||..+ ..||.|...+.. +..+..|+.+|.++..+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl 86 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGL 86 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchH
Confidence 458999999999977788889999999999887 459999987765 888999999999886544
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.1e-06 Score=80.09 Aligned_cols=44 Identities=32% Similarity=0.942 Sum_probs=38.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHh-c----CC-CCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISR-F----KD-CPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~-~----~~-CP~C~~~~~~ 132 (392)
.++.|+||++... .|..++|||.||+.||.. | .. ||+||+.+..
T Consensus 214 ~d~kC~lC~e~~~-~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPE-VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccC-CcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 5799999999988 999999999999999998 5 23 9999986543
No 30
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.07 E-value=1.7e-05 Score=75.57 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=100.4
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..+++.+|...|..+.+...++.. .......+.+.+.++... ++++|+..|++++.+...... ...
T Consensus 47 ~~~~~~~A~~ay~kAa~~~~~~~~-----~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~--------~~~ 112 (282)
T PF14938_consen 47 LAKDWEKAAEAYEKAADCYEKLGD-----KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR--------FSQ 112 (282)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---------HHH
T ss_pred HHhccchhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc--------HHH
Confidence 566778888888888888877655 334456677788887665 999999999999998876322 224
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 323 VAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 323 la~sl~~l~~v~~~l-g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|..+.++|.++... |++++|+.+|++|+++++..............++. ++-.+++|.+|+.+|++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~--l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD--LYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH--HHHHhCCHHHHHHHHHH
Confidence 588899999999999 99999999999999999998533344455666666 88899999999999875
No 31
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=3.7e-05 Score=77.93 Aligned_cols=115 Identities=21% Similarity=0.321 Sum_probs=91.7
Q ss_pred cchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHH
Q 016262 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 324 (392)
Q Consensus 245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla 324 (392)
|+..+++.+|..++.. ...-+.+.++||+++..+|.++.|..+|.++|++.- +.|
T Consensus 334 G~V~ea~~cYnkaL~l-----------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p--------------~~a 388 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRL-----------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP--------------EFA 388 (966)
T ss_pred cchHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--------------hhh
Confidence 4445666666655433 222346789999999999999999999999887643 357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+|||.++.++|++++|+..|++++. ..|.-|..+.+++. +|..+++-+.||..|..|
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr------I~P~fAda~~NmGn--t~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR------IKPTFADALSNMGN--TYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh------cCchHHHHHHhcch--HHHHhhhHHHHHHHHHHH
Confidence 7889999999999999999999999984 46777788889998 999999888888887654
No 32
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.04 E-value=3.2e-06 Score=56.38 Aligned_cols=39 Identities=38% Similarity=1.001 Sum_probs=31.0
Q ss_pred eccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcC
Q 016262 91 SCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGAD 129 (392)
Q Consensus 91 ~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~ 129 (392)
.|+||.+.+.+...+.+|+|.||..|+..|. .||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4899999986344455599999999998773 49999875
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.01 E-value=1.5e-06 Score=57.82 Aligned_cols=27 Identities=37% Similarity=1.111 Sum_probs=18.5
Q ss_pred ccccccccccC----ceecccCcHhHHHhHHhc
Q 016262 92 CMICQALLFEC----SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 92 C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~ 120 (392)
||||.+ +. . |++++|||+||+.||.++
T Consensus 1 CpIc~e-~~-~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FS-TEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT------TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-cc-CCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 55 5 999999999999999876
No 34
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.6e-06 Score=85.78 Aligned_cols=43 Identities=30% Similarity=0.814 Sum_probs=37.8
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC---------CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~ 132 (392)
+..||||+.... -|+.+.|||.||..||..+| .||+|+..+..
T Consensus 186 ~~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 678999999977 77888899999999998875 39999988876
No 35
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.99 E-value=3.6e-06 Score=54.16 Aligned_cols=34 Identities=38% Similarity=1.115 Sum_probs=29.7
Q ss_pred ccccccccccCceecccCcHhHHHhHHhcC-----CCCCC
Q 016262 92 CMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C 126 (392)
|+||++... .++.++|+|.||..|+..|. .||.|
T Consensus 1 C~iC~~~~~-~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC-CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999966 99999999999999999874 38876
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.7e-06 Score=81.75 Aligned_cols=60 Identities=23% Similarity=0.629 Sum_probs=47.8
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc-----CCCCCCCcCCcc---cchhhHHHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK---IEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~---~~~n~~l~~~~~~~~ 147 (392)
.++.|+||+++|.....+..|+|.||..||... ..||.||+.+.+ +.++..+-.|+..+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 479999999999967777789999999999654 469999998776 666665556666554
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.89 E-value=1e-05 Score=76.42 Aligned_cols=44 Identities=25% Similarity=0.664 Sum_probs=34.1
Q ss_pred Cceecccccc--ccccCc---eecccCcHhHHHhHHhcC-----CCCCCCcCCcc
Q 016262 88 GPLSCMICQA--LLFECS---KCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~--~~~~~p---~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
++..||+|+. ++. +. .+.+|||+||..|+..+| .||.|+..+..
T Consensus 2 d~~~CP~Ck~~~y~n-p~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRN-PSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccC-cccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 3468999999 444 32 233799999999999975 49999988776
No 38
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=8.7e-05 Score=74.56 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..++.+|.+.+..+.+.+|+.+|+.+|...++...+.+ -..-.++|||.+++.++.+.+|+.+|++++
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL----- 482 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-------FWEPTLNNLGHAYRKLNKYEEAIDYYQKAL----- 482 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-------chhHHHHhHHHHHHHHhhHHHHHHHHHHHH-----
Confidence 46789999999999999999999999977776554433 235568999999999999999999999988
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...|.++...--++- +++-+++.++|+++|.+|
T Consensus 483 -~l~~k~~~~~asig~--iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 483 -LLSPKDASTHASIGY--IYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred -HcCCCchhHHHHHHH--HHHHhcChHHHHHHHHHH
Confidence 556677777777777 888999999999998764
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.74 E-value=0.00011 Score=77.55 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++..+|++++|+..|++++++... .......+...+......+...|++++|+..|++++++
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~-------~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--- 537 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKE-------TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--- 537 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc-------cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 35667788888888888888888888865322 11111122333334444555567777777777777643
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+|+.......++. ++..++++.+|+.+|++|
T Consensus 538 ---~p~~~~a~~~la~--~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 538 ---DPECDIAVATMAQ--LLLQQGDVDEALKLFERA 568 (615)
T ss_pred ---CCCcHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 5566555556666 777788888888887764
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.70 E-value=8.9e-05 Score=78.39 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=86.4
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
+.+....|++..|+.+++++.+. .+... ..+..+|.++..+|++++|+..|++++++. +.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------P~-- 431 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKL----NSEDP-------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------PD-- 431 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------cc--
Confidence 33444566777777777766433 22222 356778888888999999999998887652 22
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 318 ~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
....+.++|.++..+|++++|+..|++++. ..|..+.+...++. ++..++++.+|+.+|++|
T Consensus 432 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~------~~P~~~~~~~~lg~--~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 432 -----FIFSHIQLGVTQYKEGSIASSMATFRRCKK------NFPEAPDVYNYYGE--LLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCChHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 134456788888889999988888888874 35666777777777 777888888888888764
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.68 E-value=0.00012 Score=71.36 Aligned_cols=41 Identities=22% Similarity=0.648 Sum_probs=34.2
Q ss_pred CceeccccccccccCc---eecccCcHhHHHhHHhcCC--CCCCCc
Q 016262 88 GPLSCMICQALLFECS---KCTPCSHVYCKACISRFKD--CPLCGA 128 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~~~--CP~C~~ 128 (392)
+.-+||||++-+-... +++.|.|+|=..|+..||. ||.||.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~ 219 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRY 219 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhh
Confidence 3458999999876443 6889999999999999974 999986
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.00064 Score=59.33 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=84.4
Q ss_pred cccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016262 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~ 314 (392)
...+..+...|++..|+..++.+..... . ......++.++|.++...|++++|+.+|++++.+. +
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~---~-----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~ 103 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEI---D-----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------P 103 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccc---c-----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence 3444555567888888888887755421 1 11234578999999999999999999999999762 2
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 016262 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 363 (392)
Q Consensus 315 ~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~ 363 (392)
........++..+.++|.+...+|+++.|+..|++++.+++.. ...|.+
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2233344666677777777779999999999999999999998 666543
No 43
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.00052 Score=65.36 Aligned_cols=98 Identities=20% Similarity=0.338 Sum_probs=77.8
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~-g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~ 321 (392)
..++...|+.+++.+.+...+.+. ....+..+.+++.++... |++++|+.+|++++++.+... ...
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~-----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--------~~~ 152 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGR-----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--------SPH 152 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------HH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--------Chh
Confidence 455678899999999999888765 455678899999999998 999999999999999987732 112
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.....+.+++.++..+|++++|+..|++....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44667889999999999999999999987654
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=3.4e-05 Score=75.95 Aligned_cols=63 Identities=29% Similarity=0.841 Sum_probs=52.0
Q ss_pred cCceeccccccccccCceecccCcHhHHHhHHhc----CCCCCCCcCCcc-------cchhhHHHHHHHHHHhhh
Q 016262 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK-------IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~-------~~~n~~l~~~~~~~~~~~ 150 (392)
-.+|.|.||...|. +|+++||||+||..||.+. ..||.|+..+.. ..+|+.+..++..|....
T Consensus 82 ~sef~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 82 RSEFECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred cchhhhhhhHhhcC-CCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35799999999999 9999999999999998776 359999998875 334777778888887554
No 45
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.53 E-value=5.2e-05 Score=66.05 Aligned_cols=54 Identities=28% Similarity=0.612 Sum_probs=41.9
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc-cchhhHHHHHH
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTLQDVV 143 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l~~~~ 143 (392)
+|.|.||...+. .|+++.|||+||..|...-. .|-.|++.... +.....++.|+
T Consensus 196 PF~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhcc-chhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHHH
Confidence 689999999988 99999999999999975442 49999887665 44444444444
No 46
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.00092 Score=58.35 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
......+..++.++...|++++|+..|.+++.+.. .+ .+.+.++.++|.++..+|++++|+..|++++.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33567788999999999999999999999998731 11 13466889999999999999999999999997
Q ss_pred H
Q 016262 353 R 353 (392)
Q Consensus 353 i 353 (392)
+
T Consensus 101 ~ 101 (168)
T CHL00033 101 R 101 (168)
T ss_pred h
Confidence 6
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.001 Score=67.12 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=100.8
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+|+-++-+|++=|...+..+- . +||.-.-++.-+|.+.++.+++.+|..+++..++....+.....
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~-------a-------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQAL-------A-------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHH-------h-------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 455555566666655554221 1 22222234455666666788889999999999877766665444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
.|. -.+++||-++..++.+++|+.+|+++|.+... . +....-+|.++..+|+++.|+++|.+
T Consensus 453 ~w~----p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~--------~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 453 FWE----PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK------D--------ASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred chh----HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC------c--------hhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 443 46899999999999999999999999865332 1 56678899999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhc
Q 016262 350 AIKRLESLTLKPEEAGLEQRCW 371 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~ 371 (392)
|+ ...|.+......+.
T Consensus 515 aL------~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 515 AL------ALKPDNIFISELLK 530 (611)
T ss_pred HH------hcCCccHHHHHHHH
Confidence 88 44555544333333
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.45 E-value=0.00058 Score=61.07 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=51.1
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
....+.-.+..|++++|...+..... ..+.. ...+..++..+...|++..++.+++.+.+..
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~-------~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 95 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALE-------HDPDD-------YLAYLALALYYQQLGELEKAEDSFRRALTLN---- 95 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 34445556788899988888763321 11111 1222334444445666666666666554331
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
+... ....+++.++...|++++|+.+|++++.
T Consensus 96 ~~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 96 PNNG-------DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred CCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 1111 2445566666666666666666666654
No 49
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00076 Score=49.35 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKR 353 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg-~~~~A~~~~~~al~i 353 (392)
+..+..+|.++...|++++|+.+|.+++++- +. -+..+.++|.++..+| ++++|+..|++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~-------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PN-------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TT-------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CC-------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999862 22 2557889999999999 799999999999975
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=6.7e-05 Score=77.99 Aligned_cols=44 Identities=30% Similarity=0.775 Sum_probs=38.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc-----CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
+.+.||+|..-.. +.+++.|+|.||..|+... ..||.|+..|..
T Consensus 642 ~~LkCs~Cn~R~K-d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh-hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3699999998877 8999999999999999876 359999987764
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.31 E-value=0.0021 Score=56.31 Aligned_cols=115 Identities=21% Similarity=0.286 Sum_probs=83.0
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
+...+..+...|++.+|+.+++++......- ......+.++|.++...|++++|+..|.+++.+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 102 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDP--------NDRSYILYNMGIIYASNGEHDKALEYYHQALELN------- 102 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3444455557888999999998776543211 1123578899999999999999999999988752
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE 363 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~ 363 (392)
+........++..+..++.....+|+.+.|+..|+++++++++. ...|.+
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 23333334556666666666677788999999999999999998 666664
No 52
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.31 E-value=0.00052 Score=44.73 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCC
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPE 362 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~ 362 (392)
++.++++||.++..+|++++|+.++++++++.+.+ ..||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 36789999999999999999999999999999998 55553
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.31 E-value=0.00056 Score=58.36 Aligned_cols=91 Identities=11% Similarity=-0.004 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~ 359 (392)
...|.+....|++++|+.+|.+++.+ .+. -...+.++|.++..+|++++|+..|++++ ..
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al------~l 87 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMA-------QPW-------SWRAHIALAGTWMMLKEYTTAINFYGHAL------ML 87 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH------hc
Confidence 35688888899999999999887644 222 25567888999999999999999999888 45
Q ss_pred CCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 360 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 360 ~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|..+.....++. ++..++++..|+..|++|
T Consensus 88 ~p~~~~a~~~lg~--~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 88 DASHPEPVYQTGV--CLKMMGEPGLAREAFQTA 118 (144)
T ss_pred CCCCcHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 7888888888888 888889999988888764
No 54
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00019 Score=66.68 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=39.9
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhc-----CCCCCCCcCCcc-cchhhH
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK-IEADTT 138 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~-~~~n~~ 138 (392)
-.|+||+..-. .|+.++|+|.||..||... ..|++||.++.. +..+..
T Consensus 8 ~eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ps 61 (324)
T KOG0824|consen 8 KECLICYNTGN-CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPS 61 (324)
T ss_pred CcceeeeccCC-cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchh
Confidence 56999999977 8999999999999999765 249999999987 444433
No 55
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.12 E-value=0.00018 Score=53.97 Aligned_cols=37 Identities=38% Similarity=0.928 Sum_probs=28.7
Q ss_pred ecccccccccc------------CceecccCcHhHHHhHHhcC----CCCCCC
Q 016262 91 SCMICQALLFE------------CSKCTPCSHVYCKACISRFK----DCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~~~------------~p~~~~C~h~fC~~Ci~~~~----~CP~C~ 127 (392)
.|+||++.|.+ ..+..+|||.|...||.+|. .||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999999832 23455899999999999994 599997
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.12 E-value=0.0062 Score=53.36 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.-......+|.++...|++++|+.+|++++++.... . +.+..+.++|.++..+|++++|+..|++++.+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----N------DRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----c------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345577899999999999999999999998864321 1 23566789999999999999999999999875
No 57
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.11 E-value=0.00058 Score=63.23 Aligned_cols=60 Identities=27% Similarity=0.620 Sum_probs=47.8
Q ss_pred ceeccccccccccCceec-ccCcHhHHHhHHhc-----CCCCCCCc---CCcccchhhHHHHHHHHHHhh
Q 016262 89 PLSCMICQALLFECSKCT-PCSHVYCKACISRF-----KDCPLCGA---DIEKIEADTTLQDVVDRFIEG 149 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~-----~~CP~C~~---~~~~~~~n~~l~~~~~~~~~~ 149 (392)
.|.|++|..+++ .|+-+ .|+|.||..||... +.||.|.. .+..+.++...+..|+.+.+.
T Consensus 274 ~LkCplc~~Llr-np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 274 SLKCPLCHCLLR-NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred cccCcchhhhhh-CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 599999999999 55555 78999999999854 56999976 333488888888888887763
No 58
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0003 Score=65.29 Aligned_cols=50 Identities=24% Similarity=0.751 Sum_probs=41.2
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc-cchhhHH
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTL 139 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l 139 (392)
++.|.||..+|. .|+++.|+|.||..|..... .|++|.+.+.. +.+..-|
T Consensus 241 Pf~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL 295 (313)
T KOG1813|consen 241 PFKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKEL 295 (313)
T ss_pred Cccccccccccc-cchhhcCCceeehhhhccccccCCcceecccccccccchHHHH
Confidence 688999999999 99999999999999986553 49999998877 4444433
No 59
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.92 E-value=0.00026 Score=73.21 Aligned_cols=44 Identities=16% Similarity=0.497 Sum_probs=35.9
Q ss_pred ceeccccccccccC--ceecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.-+|++|+.-+.+. ..-.+|+|.||..||..|. .||.||..|..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 56899999987753 3345799999999999993 59999998776
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.92 E-value=0.0036 Score=71.12 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=86.2
Q ss_pred cccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------H--
Q 016262 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD-------A-- 309 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~-------~-- 309 (392)
......|++.+|+.+++++... .+.. ...+..++.++...|++++|+..|++++++.-. +
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~----~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQV----DNTD-------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3444567778888887766544 2222 245678999999999999999999999974211 0
Q ss_pred -hhc-CCCCCchhh------------HH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhh
Q 016262 310 -VKR-HSNVPSQVL------------DV-----AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC 370 (392)
Q Consensus 310 -~~~-~~~~~~~~~------------dl-----a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~ 370 (392)
... ..+.....+ ++ ...+..++.++...|++++|+..|+++++ ..|++..+...+
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~------~~P~~~~~~~~L 501 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA------LDPGSVWLTYRL 501 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHH
Confidence 000 000000000 00 12234567788888999999999988874 467777777677
Q ss_pred cchhHHHHHHhhhccccchhc
Q 016262 371 WNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 371 ~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+. ++..++++.+|+..|++
T Consensus 502 A~--~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 502 AQ--DLRQAGQRSQADALMRR 520 (1157)
T ss_pred HH--HHHHcCCHHHHHHHHHH
Confidence 66 77777777777777664
No 61
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00041 Score=66.79 Aligned_cols=43 Identities=33% Similarity=0.700 Sum_probs=36.9
Q ss_pred eecccccccccc--CceecccCcHhHHHhHHhcC-----CCCCCCcCCcc
Q 016262 90 LSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
..|.||++.+.+ .-+.|||.|.|=..||..|. .||.|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 499999999874 36789999999999999993 39999987665
No 62
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.88 E-value=0.003 Score=69.98 Aligned_cols=114 Identities=12% Similarity=0.046 Sum_probs=78.0
Q ss_pred cchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHH
Q 016262 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 324 (392)
Q Consensus 245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla 324 (392)
|++..|+..++++.+. .+. .....+++.++..+|++++|+..|++++++ .+.+ +
T Consensus 590 Gr~~eAl~~~~~AL~l----~P~--------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd~-------~ 643 (987)
T PRK09782 590 GQPELALNDLTRSLNI----APS--------ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPNN-------S 643 (987)
T ss_pred CCHHHHHHHHHHHHHh----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------H
Confidence 5666666665554322 111 134567788888888888888888776654 2332 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..+.++|.++..+|++++|+..|++++ ...|.++.+...++. .+..++++..++.+|++|
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL------~l~P~~~~a~~nLA~--al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAH------KGLPDDPALIRQLAY--VNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 456777778888888888888777776 456777777777777 778888888888777764
No 63
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0009 Score=61.54 Aligned_cols=46 Identities=30% Similarity=0.719 Sum_probs=36.0
Q ss_pred cCceeccccccccccCceecccCcHhHHHhHHhc------CCCCCCCcCCcc
Q 016262 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
.....|++|.+....+-+..+|+|.||..||... +.||.|+.....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3568999999998844445569999999999764 359999987654
No 64
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.0029 Score=64.96 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
++--||.++..+++++.|.-+|++|++| .+.+ .+.+..+|.++..+|+.++|+.+|++|+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~I-------NP~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~------ 550 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEI-------NPSN-------SVILCHIGRIQHQLKRKDKALQLYEKAI------ 550 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcC-------Cccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHH------
Confidence 4455677777777777777777776654 2221 2345677888888888888888888877
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
..+|.+.--.-..+. ++-.+++|.++|.-++
T Consensus 551 ~ld~kn~l~~~~~~~--il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRAS--ILFSLGRYVEALQELE 581 (638)
T ss_pred hcCCCCchhHHHHHH--HHHhhcchHHHHHHHH
Confidence 455555444444444 7777888877775544
No 65
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.78 E-value=0.012 Score=57.94 Aligned_cols=59 Identities=20% Similarity=0.054 Sum_probs=31.2
Q ss_pred cccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 235 ~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
..++..+...|++..|+.+++...+. .. .-......++.++...|++++|+..|.+.++
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~----~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDE----GD-------FAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcC----Cc-------chHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 33444444556666666665554321 11 1123455666666666777777666665543
No 66
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.74 E-value=0.0039 Score=39.65 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
++.+||.++..+|++++|+++|++++.+-+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999776543
No 67
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.73 E-value=0.0093 Score=63.66 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
.....++.++...|++++|+..|++++++ .+.+ .....+++.++..+|++++|+..|++++.
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l-------~P~~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~---- 346 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLAT-------HPDL-------PYVRAMYARALRQVGQYTAASDEFVQLAR---- 346 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 45677788888888888888888887754 2221 33456788899999999999888877664
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+|..+.+...++. .+..++++..|+.+|++|
T Consensus 347 --~~P~~~~~~~~~a~--al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 347 --EKGVTSKWNRYAAA--ALLQAGKTSEAESVFEHY 378 (656)
T ss_pred --hCccchHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 45665544444444 667788888888888763
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.72 E-value=0.006 Score=58.48 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
..+..+|.++...|++++|+..|++++++ .+. -...+.++|.++..+|++++|+..|++++
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLEL-------DPT-------YNYAYLNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555555555554433 111 12334555555555666666666555555
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.71 E-value=0.0078 Score=53.65 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
......++.++...|++++|+.+|++++++. +.. ...+.+++.++..+|++++|+..|++++..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 128 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNN-------GDVLNNYGTFLCQQGKYEQAMQQFEQAIED-- 128 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--
Confidence 4566677778878888888888888777541 111 234567788888888888888888887752
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+....+...++. ++..++++..++.+|+++
T Consensus 129 --~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 129 --PLYPQPARSLENAGL--CALKAGDFDKAEKYLTRA 161 (234)
T ss_pred --cccccchHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 122334444555555 677778888888887653
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.63 E-value=0.0077 Score=44.68 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~ 358 (392)
+..++.++...|++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|++++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----- 63 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALEL----- 63 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 4567888888899999999888877642 111 145667888889999999999988887754
Q ss_pred cCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 359 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 359 ~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|....+...++. .+..++++..++.+++.
T Consensus 64 -~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 64 -DPDNAKAYYNLGL--AYYKLGKYEEALEAYEK 93 (100)
T ss_pred -CCcchhHHHHHHH--HHHHHHhHHHHHHHHHH
Confidence 3333344455555 66677777887777754
No 71
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.60 E-value=0.0052 Score=57.76 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---------HH-HhhcCCCCCc--------hhh--HHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------RD-AVKRHSNVPS--------QVL--DVAVSLAKVA 331 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~---------~~-~~~~~~~~~~--------~~~--dla~sl~~l~ 331 (392)
...+++.++.-|+=...-++|++|+..|.+++++- |. ++-+..+-.. ..+ .-..++..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45677888888888888899999999999998753 11 1111110000 001 1234455678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 332 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 332 ~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
.++..+|++++|++.|+++| +.+|.+..+...+..
T Consensus 157 ~A~~~~gk~~~A~~aykKaL------eldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKAL------ELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHccCcHHHHHHHHHhhh------ccCCCcHHHHHHHHH
Confidence 88888888888888888877 667777766655544
No 72
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.59 E-value=0.014 Score=49.61 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=75.6
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
+......|++.+|+.+++... .+.+.. ...+..+|.+...+|++++|+..|++++++ .+.+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al----~~~P~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-------~p~~- 91 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLV----MAQPWS-------WRAHIALAGTWMMLKEYTTAINFYGHALML-------DASH- 91 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HcCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCC-
Confidence 334447888888888877653 333333 346788999999999999999999998864 2322
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 318 ~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+..+.++|.++..+|++++|+..|+++++ ..|.++....+++.
T Consensus 92 ------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~------~~p~~~~~~~~~~~ 134 (144)
T PRK15359 92 ------PEPVYQTGVCLKMMGEPGLAREAFQTAIK------MSYADASWSEIRQN 134 (144)
T ss_pred ------cHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHH
Confidence 55678899999999999999999999984 45555544444333
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.58 E-value=0.0024 Score=72.58 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=85.6
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.++......|++..|+..++...+. .+... .....++.++...|++++|+..|++.++. .+.
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~----~P~~~-------~a~~~la~~~~~~g~~~eA~~~l~~ll~~-------~p~ 669 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTR----EPGNA-------DARLGLIEVDIAQGDLAAARAQLAKLPAT-------AND 669 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-------CCC
Confidence 3445555778888888888766543 23222 35678888888889999999888865542 222
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
. ...+..+|.++..+|++++|+..|++++.+...-......+.+...++. ++...++..+|+.+|++|
T Consensus 670 ~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~--~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 670 S-------LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR--FEAQTGQPQQALETYKDA 737 (1157)
T ss_pred C-------hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 1 3345567888888999999999888877543222111123344444555 777788888888888875
No 74
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.57 E-value=0.0058 Score=60.22 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~ 359 (392)
...+.-....|++++|+..|.++|++ .+.+ +..+.++|.++..+|++++|+..+++++. .
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~-------~P~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~------l 65 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL-------DPNN-------AELYADRAQANIKLGNFTEAVADANKAIE------L 65 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------h
Confidence 34456666677888888887777753 2221 33456677777777777777777777764 3
Q ss_pred CCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 360 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 360 ~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|..+....+++. ++..+++|..|+.+|++|
T Consensus 66 ~P~~~~a~~~lg~--~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 66 DPSLAKAYLRKGT--ACMKLEEYQTAKAALEKG 96 (356)
T ss_pred CcCCHHHHHHHHH--HHHHhCCHHHHHHHHHHH
Confidence 5556666666666 677777777777777653
No 75
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.50 E-value=0.0029 Score=46.19 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHH-hhhccccchhcC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK-NHLNQLPKFRSA 392 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~-~~~~~l~~~~~~ 392 (392)
+..+..+|.++..+|++++|+..|++++++ +|.++.+..+++. .+..++ ++.+++.+|++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~--~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGL--AYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHH--HHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHH--HHHHhCccHHHHHHHHHHH
Confidence 567888999999999999999999999954 6888888989998 888888 799999998874
No 76
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.47 E-value=0.0079 Score=38.23 Aligned_cols=31 Identities=35% Similarity=0.628 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~ 308 (392)
++.+||.++..+|++++|+.+|+++|.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999987765
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.45 E-value=0.0077 Score=43.41 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.++..+...|++++|+..|++.++ ..+. -...+..+|.++..+|++++|+..|++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~-------~~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK-------QDPD-------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC-------CSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH-------HCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357778888999988888887663 3333 3667788999999999999999999998854
No 78
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0013 Score=68.53 Aligned_cols=43 Identities=28% Similarity=0.768 Sum_probs=37.7
Q ss_pred CceeccccccccccC----ceecccCcHhHHHhHHhcC----CCCCCCcCC
Q 016262 88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK----DCPLCGADI 130 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~ 130 (392)
....|+||.+.+... |..++|+|.|+..|+..|. .||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 468999999999943 8999999999999999994 599999843
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.43 E-value=0.0096 Score=49.42 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
....++..+...|++++|+..|++.+.+ .+.+ ...+.++|.++..+|++++|+..|++++++
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY-------DPYN-------SRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3455666666666666666666554432 1111 233445566666666666666666655532
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|.+......++. .+..++++.+++++|+.
T Consensus 81 --~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 81 --DPDDPRPYFHAAE--CLLALGEPESALKALDL 110 (135)
T ss_pred --CCCChHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 3455555555555 55566666666666554
No 80
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.33 E-value=0.026 Score=61.03 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+.+++.++..+|+ .+|+.+|+++++ ..|.+..+...++. ++..++++.+|+.+|++|
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALK------LAPNIPAILDTLGW--LLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHh------hCCCCcHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 44555555556665 555555555543 34555666666666 677778888888887764
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.30 E-value=0.013 Score=52.88 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-DRSIGNE--DVAVDGFQEAIKR 353 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v-~~~lg~~--~~A~~~~~~al~i 353 (392)
..+..+|.++...|++++|+..|++++++. +.+ +..+..+|.+ +...|++ .+|+..+++++
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al-- 137 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLR-------GEN-------AELYAALATVLYYQAGQHMTPQTREMIDKAL-- 137 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH--
Confidence 467888999999999999999999888642 211 3334445554 2444542 44444444433
Q ss_pred HHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 354 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 354 le~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..+|.+...+.+++. .+..++++.+|+.+|++
T Consensus 138 ----~~dP~~~~al~~LA~--~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 138 ----ALDANEVTALMLLAS--DAFMQADYAQAIELWQK 169 (198)
T ss_pred ----HhCCCChhHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 555566556666666 55566666666666654
No 82
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.002 Score=59.99 Aligned_cols=42 Identities=26% Similarity=0.856 Sum_probs=35.8
Q ss_pred eecccccccccc--CceecccCcHhHHHhHHhcC-----CCCCCCcCCc
Q 016262 90 LSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~ 131 (392)
..|.||+.-+.. .-+++||.|.|-..|+..|. .||.||..+.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 689999997763 36789999999999999994 5999998764
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.18 E-value=0.024 Score=51.55 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~ 359 (392)
-.++--|...|++..|+..++++|++- +.. ..+..-++.++..+|..+.|-+.|++|+ ..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~-------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl------sl 98 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-------PSY-------YLAHLVRAHYYQKLGENDLADESYRKAL------SL 98 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-------ccc-------HHHHHHHHHHHHHcCChhhHHHHHHHHH------hc
Confidence 334444455566666666555555431 110 1112224555555555555555555555 44
Q ss_pred CCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 360 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 360 ~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+|.+..++|+.+. .+=-.+++..++.+|.+
T Consensus 99 ~p~~GdVLNNYG~--FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 99 APNNGDVLNNYGA--FLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCCccchhhhhhH--HHHhCCChHHHHHHHHH
Confidence 5555555555555 44444444444444443
No 84
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.018 Score=56.39 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~-dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
..+...+.-|+.++..|+|..|+..|++++...........+....+- .....+.|++.++..++++.+|+..-+++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL- 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL- 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH-
Confidence 345667788999999999999999999999876532222211111111 334456789999999999998888776665
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..+|.+...+-+.+. .+--+.+|..|++.||+|
T Consensus 285 -----e~~~~N~KALyRrG~--A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 285 -----ELDPNNVKALYRRGQ--ALLALGEYDLARDDFQKA 317 (397)
T ss_pred -----hcCCCchhHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 778888888888888 888888999888888865
No 85
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.15 E-value=0.0034 Score=62.53 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCceeccccccccccCceecccCcHhHHHhHHhc--------
Q 016262 49 NSAKPQAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-------- 120 (392)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-------- 120 (392)
..++|++.+-.+.+++-..+ ..+...|.+|.+.-. +++...|-|.||+.||.++
T Consensus 513 Q~aDHP~LVl~S~~~n~~~e-----------------nk~~~~C~lc~d~ae-d~i~s~ChH~FCrlCi~eyv~~f~~~~ 574 (791)
T KOG1002|consen 513 QAADHPDLVLYSANANLPDE-----------------NKGEVECGLCHDPAE-DYIESSCHHKFCRLCIKEYVESFMENN 574 (791)
T ss_pred HhccCcceeeehhhcCCCcc-----------------ccCceeecccCChhh-hhHhhhhhHHHHHHHHHHHHHhhhccc
Confidence 35678888777644322111 114678999999977 9999999999999999766
Q ss_pred -CCCCCCCcCCcc
Q 016262 121 -KDCPLCGADIEK 132 (392)
Q Consensus 121 -~~CP~C~~~~~~ 132 (392)
..||.|...+..
T Consensus 575 nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 575 NVTCPVCHIGLSI 587 (791)
T ss_pred CCCCccccccccc
Confidence 249999876654
No 86
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.12 E-value=0.021 Score=61.82 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
....+..+|..+...|++++|+..|++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 154 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAI 154 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456677888888889999999988887653
No 87
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.08 E-value=0.039 Score=55.20 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.........++|..+..+|++++|+..|+++|++. +.+. +...++.|+|.++..+|++++|+..|++|+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPD----EAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44456788999999999999999999999998773 2221 223568999999999999999999999999
Q ss_pred HH
Q 016262 352 KR 353 (392)
Q Consensus 352 ~i 353 (392)
++
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 97
No 88
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.07 E-value=0.0037 Score=62.23 Aligned_cols=44 Identities=30% Similarity=0.773 Sum_probs=37.9
Q ss_pred CceeccccccccccCcee-cccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
..+.|++|..++. +|+. +.|||.||..|+..|. .||.|+.....
T Consensus 20 ~~l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred ccccCcccccccc-CCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 5699999999999 7777 5999999999999884 59999877665
No 89
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.03 E-value=0.017 Score=37.28 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
..++++|+.++..+|++++|+.++++++++++...+.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999876553
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.00 E-value=0.066 Score=48.96 Aligned_cols=176 Identities=13% Similarity=-0.019 Sum_probs=107.7
Q ss_pred hHhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhC
Q 016262 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L 264 (392)
-++..+...+..|++++|...+.... ...+.+. .....+..++......|++..|+..++...+...
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~-------~~~p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-- 101 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALE-------SRYPFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-- 101 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--
Confidence 45666666788999999988876321 1122211 1112333445555577888889988887754332
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchh---hHH-------HHH
Q 016262 265 PMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQV---LDV-------AVS 326 (392)
Q Consensus 265 ~~~~~e~~~~l~~~l~~lg~l~~~~--------g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~---~dl-------a~s 326 (392)
....+ ...+..+|.++... |++++|+..|++.+.. .+.+.... ..+ ...
T Consensus 102 --~~~~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 102 --NHPDA----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred --CCCch----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHHH
Confidence 22211 23456667776654 5666777777666543 33322110 011 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.-.+|.++...|++.+|+..|+++++.. ...|..+.....++. .+..++++.++++++++
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l~~--~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENY---PDTPATEEALARLVE--AYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHC---CCCcchHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 1256888999999999999999877443 224555566777777 88889999999988764
No 91
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.95 E-value=0.064 Score=53.17 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=63.3
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
|.+-+..|++.+|...|.+++ .. .....+++-+||..+..+|++++|+.+|-+.-.|.+..
T Consensus 497 gn~~f~ngd~dka~~~ykeal------~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn-------- 557 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEAL------NN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-------- 557 (840)
T ss_pred CceeeecCcHHHHHHHHHHHH------cC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------
Confidence 334445666666655555442 22 12234678889999999999999999888877666542
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 318 ~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+..|-.++.+|+.+.+-..|++.|-|+- .+-|.++.++..++.
T Consensus 558 ------~evl~qianiye~led~aqaie~~~q~~------slip~dp~ilskl~d 600 (840)
T KOG2003|consen 558 ------AEVLVQIANIYELLEDPAQAIELLMQAN------SLIPNDPAILSKLAD 600 (840)
T ss_pred ------HHHHHHHHHHHHHhhCHHHHHHHHHHhc------ccCCCCHHHHHHHHH
Confidence 3445556666666666666666555543 333444444545444
No 92
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.95 E-value=0.19 Score=48.73 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=80.7
Q ss_pred ccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHH
Q 016262 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dl 323 (392)
+.|+.++.-+...+.+....+.-..-. ...-..++-.+...+..+|++-.|.++.+++.++.-...++...
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~-------- 245 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWS-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ-------- 245 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchh-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH--------
Confidence 345566666666666666665532211 22234456677777777888889999999999988776665554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~ 362 (392)
+..+--+|+||+..|+.+.|...|++|+.+...+.++-.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 777888999999999999999999999999988854433
No 93
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.94 E-value=0.031 Score=62.11 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=79.2
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
+..++.++...|++.+|+..++..... .+... ....++|.++...|++++|+..|++++++ .
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l----~Pd~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-------~ 673 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALEL----EPNNS-------NYQAALGYALWDSGDIAQSREMLERAHKG-------L 673 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------C
Confidence 344555666788888888877765433 34333 46788999999999999999999988764 3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+.+ +..+.++|.++..+|++++|+..|+++++ ..|+.+.+....+.
T Consensus 674 P~~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~------l~P~~a~i~~~~g~ 719 (987)
T PRK09782 674 PDD-------PALIRQLAYVNQRLDDMAATQHYARLVID------DIDNQALITPLTPE 719 (987)
T ss_pred CCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCCchhhhhhhH
Confidence 332 45678999999999999999999999984 44666655555554
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.93 E-value=0.06 Score=53.04 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=51.4
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..+++..|+.++++..+.. +. .......++.++...|++++|+..|+++++.- +. .
T Consensus 192 ~~~~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~------~ 247 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD----PQ-------CVRASILLGDLALAQGDYAAAIEALERVEEQD-------PE------Y 247 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC----cC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------hh------h
Confidence 4566666666666554321 11 12345567888888888888888888776531 11 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
....+..++.++..+|++++|+..++++++
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233345566666677777777766666554
No 95
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.91 E-value=0.064 Score=42.84 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..-.++......|++++|+..|.+.+.. .+... .....+-++|.++...|+++.|+..|++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 69 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-------YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--- 69 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---
Confidence 3456677777788888888888877643 12111 113445668888888888888888888877422
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..++........++. .+..++++.+++.+|++
T Consensus 70 p~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 70 PKSPKAPDALLKLGM--SLQELGDKEKAKATLQQ 101 (119)
T ss_pred CCCCcccHHHHHHHH--HHHHhCChHHHHHHHHH
Confidence 222223344445555 56667777777776654
No 96
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.003 Score=60.39 Aligned_cols=45 Identities=27% Similarity=0.746 Sum_probs=37.5
Q ss_pred ccCceeccccccccccCc------------eecccCcHhHHHhHHhcC----CCCCCCcCC
Q 016262 86 KIGPLSCMICQALLFECS------------KCTPCSHVYCKACISRFK----DCPLCGADI 130 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p------------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~ 130 (392)
.+++..|.||.+-+..++ +.+||||.|-..|+.-|. .||.||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 446789999999855444 899999999999998884 499999884
No 97
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0042 Score=60.17 Aligned_cols=46 Identities=26% Similarity=0.704 Sum_probs=36.9
Q ss_pred cCceeccccccccccCc-------eecccCcHhHHHhHHhcC-----------CCCCCCcCCcc
Q 016262 87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK-----------DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~ 132 (392)
..+..|.||++...+.+ ...+|.|.||..||..|. .||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999999977444 125699999999999994 39999987765
No 98
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.83 E-value=0.11 Score=42.79 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.-+++..+..+|+.++|+.+|+++++. .-... +....+-.+|.++..+|++++|+..+++++.-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-----GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677788889999999999998862 11111 22445668899999999999999999888753
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.82 E-value=0.047 Score=47.02 Aligned_cols=84 Identities=13% Similarity=0.004 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.+....-+-+||-+...+|++++|+..|..++.+. +++ ....-++|.++-.+|+.+.|...|+.++
T Consensus 65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~dd-------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDA-------PQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444556666666666666666666666655432 111 3345667777777777777777777777
Q ss_pred HHHHHhhcCCCchhHHHhhcc
Q 016262 352 KRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~ 372 (392)
.+.. .+|+.+.+.++...
T Consensus 131 ~~~~---~~~~~~~l~~~A~~ 148 (157)
T PRK15363 131 RICG---EVSEHQILRQRAEK 148 (157)
T ss_pred HHhc---cChhHHHHHHHHHH
Confidence 6652 44555555555444
No 100
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.78 E-value=0.0045 Score=43.90 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=25.7
Q ss_pred ceeccccccccccCcee-cccCcHhHHHhHHhcC------CCCC
Q 016262 89 PLSCMICQALLFECSKC-TPCSHVYCKACISRFK------DCPL 125 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~------~CP~ 125 (392)
.+.|||.+..|. +|+. ..|+|+|.+..|.++. .||.
T Consensus 11 ~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 589999999999 6655 6999999999999985 2888
No 101
>PRK12370 invasion protein regulator; Provisional
Probab=95.77 E-value=0.075 Score=55.59 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.+..+|.++...|++++|+..|++++++ .+.+ +..+..+|.++..+|++++|+..|++++
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~-------~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS-------ADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456677777778888888888877754 2221 3344556666666677776666666655
No 102
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.045 Score=54.22 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHH--------
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF-------- 347 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~-------- 347 (392)
.+.+-.|..+|..+.+-..|+..|.++..+. +.. -..|++|+++|.+.|+...|..++
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sli-------p~d-------p~ilskl~dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLI-------PND-------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-------CCC-------HHHHHHHHHHhhcccchhhhhhhhhhcccccC
Confidence 4566777888877788888888777765321 111 112444555555555544444322
Q ss_pred -------------------HHHHHHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 348 -------------------QEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 348 -------------------~~al~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
++++..++.- -..|....|.-.+.+ .+..-++|++++++|++
T Consensus 624 ~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias--c~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 624 CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS--CFRRSGNYQKAFDLYKD 685 (840)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH--HHHhcccHHHHHHHHHH
Confidence 3344444443 445666666667777 88999999999999975
No 103
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0046 Score=59.24 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=36.9
Q ss_pred ceeccccccccccCceecccCcHh-HHHhHHhc----CCCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVY-CKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~----~~CP~C~~~~~~ 132 (392)
...|-||+.-.+ +-+++||.|.. |..|.... ..||.||+++..
T Consensus 290 gkeCVIClse~r-dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR-DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc-ceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 468999999999 99999999976 99997655 459999998765
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.74 E-value=0.077 Score=58.61 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=76.9
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
+......|++..+..+++++.......+... .....+..++.++...|++++|..++++++++.+.......
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~-----~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~--- 569 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYH-----YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL--- 569 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc---
Confidence 3344457777777777777776666554322 23346788899999999999999999999988766431110
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 318 ~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
...+.....++.++...|++++|...+++++.+.+..
T Consensus 570 ---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 570 ---PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred ---cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 1112334567888888899999999999999887754
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.72 E-value=0.048 Score=58.35 Aligned_cols=126 Identities=13% Similarity=-0.008 Sum_probs=61.6
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+.+++++-...|.+.++..+++.. -++.+.+...+. +.+.+...++.+++|+..++++ +..
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~----~~~~Pd~~~a~~-------~~a~~L~~~~~~eeA~~~~~~~-------l~~ 149 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGI----HQRFPDSSEAFI-------LMLRGVKRQQGIEAGRAEIELY-------FSG 149 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH----HhhCCCcHHHHH-------HHHHHHHHhccHHHHHHHHHHH-------hhc
Confidence 3334444433445555554444333 334444444433 3333443444444444444433 334
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.+++ +..+..+|.++..+|++++|++.|++++. .+|+.+..+-.++. .+.-+++...|...|++
T Consensus 150 ~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~--~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 150 GSSS-------AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQ--SLTRRGALWRARDVLQA 213 (694)
T ss_pred CCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 4432 44556666677777777777777776663 44444444444444 44444454444444443
No 106
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.68 E-value=0.29 Score=44.73 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=84.0
Q ss_pred hHhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhC
Q 016262 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L 264 (392)
-.++.++.-+++|++..|+.-+...-+| .+.......... ..+...|++..|-..|+.+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-------DPs~~~a~~~~A-------~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-------DPSYYLAHLVRA-------HYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CcccHHHHHHHH-------HHHHHcCChhhHHHHHHHHHhc----
Confidence 3677888899999999999888644332 111111111001 1233566665555555544332
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHH
Q 016262 265 PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 265 ~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~ 344 (392)
.+.+- ..+||-|.+.-.+|++++|..+|+++++. +.- ...+.++.|+|.+-.+.|+...|.
T Consensus 99 ~p~~G-------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y----~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 99 APNNG-------DVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAY----GEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred CCCcc-------chhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCC----CCcchhhhhhHHHHhhcCCchhHH
Confidence 22222 46788888888888888888888877631 110 123667788888888888888888
Q ss_pred HHHHHHHHHHHH
Q 016262 345 DGFQEAIKRLES 356 (392)
Q Consensus 345 ~~~~~al~ile~ 356 (392)
.+|++++++..+
T Consensus 160 ~~l~raL~~dp~ 171 (250)
T COG3063 160 EYLKRALELDPQ 171 (250)
T ss_pred HHHHHHHHhCcC
Confidence 888888766544
No 107
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.65 E-value=0.012 Score=44.83 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~ 368 (392)
.|+++.|+.+|++.++.... .. + ...+-++|.++..+|++++|+..+++ + ...+.+....-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-------~~----~-~~~~~~la~~~~~~~~y~~A~~~~~~-~------~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-------NP----N-SAYLYNLAQCYFQQGKYEEAIELLQK-L------KLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-------TH----H-HHHHHHHHHHHHHTTHHHHHHHHHHC-H------THHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-------Ch----h-HHHHHHHHHHHHHCCCHHHHHHHHHH-h------CCCCCCHHHHH
Confidence 57888888888887765432 00 1 22344589999999999999998888 2 22223334444
Q ss_pred hhcchhHHHHHHhhhccccchhcC
Q 016262 369 RCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 369 ~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.++. .+-.|+++.+||+.|+.|
T Consensus 63 l~a~--~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLAR--CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHH--HHHHTT-HHHHHHHHHHH
T ss_pred HHHH--HHHHhCCHHHHHHHHhcC
Confidence 5555 788999999999998764
No 108
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.64 E-value=0.076 Score=52.34 Aligned_cols=99 Identities=9% Similarity=0.133 Sum_probs=72.7
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++..|+.+++++.+. ..... ..+.+++.++..+|++++|+..+++++++. +.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~----~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P~------- 68 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDL----DPNNA-------ELYADRAQANIKLGNFTEAVADANKAIELD-------PS------- 68 (356)
T ss_pred HcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cC-------
Confidence 677888888888777543 23222 356788999999999999999999988762 21
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
.+..+.++|.++..+|++++|+..|+++++ ..|.+..+...+..
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~------l~P~~~~~~~~l~~ 112 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGAS------LAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCCCCHHHHHHHHH
Confidence 245577889999999999999999999884 34454444444433
No 109
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=0.11 Score=53.22 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~-~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+-|..-++...|+|.+|+..+++++.+-++.+.....+ -....+|+.-.-.++.|+..+|+-++|...|...+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44555666677999999999999999988876655444 33344777777788999999999999999887754
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.61 E-value=0.087 Score=58.20 Aligned_cols=137 Identities=15% Similarity=0.041 Sum_probs=90.7
Q ss_pred cccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016262 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~ 318 (392)
..+...|++..+..+.+++... +.... ..........++.++...|++++|...|++++...+.....
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~---~~~~~---~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~------ 527 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAE---LPLTW---YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY------ 527 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhc---CCCcc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch------
Confidence 3444567777777777666543 22211 12233456789999999999999999999999876653211
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--CCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 319 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL--KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 319 ~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~--~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
...+..+.+++.++...|++..|...+++++.+.+.... .+....+...++. ++...+++..++.++++
T Consensus 528 --~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 528 --HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ--LLWEWARLDEAEQCARK 598 (903)
T ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH--HHHHhcCHHHHHHHHHH
Confidence 123557788999999999999999999999999887622 2222233333333 44555666666655544
No 111
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.60 E-value=0.059 Score=57.60 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQA----ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~----A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
....++.++...|++++ |+..|+++++ ..+. -+..+..+|.++..+|++++|+..|+++++
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-------l~P~-------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~- 312 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-------FNSD-------NVRIVTLYADALIRTGQNEKAIPLLQQSLA- 312 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-------hCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 44567777777777765 4455554443 2332 245677889999999999999999998885
Q ss_pred HHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 354 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 354 le~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..|........++. ++..++++..++..|++
T Consensus 313 -----l~P~~~~a~~~La~--~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 313 -----THPDLPYVRAMYAR--ALRQVGQYTAASDEFVQ 343 (656)
T ss_pred -----hCCCCHHHHHHHHH--HHHHCCCHHHHHHHHHH
Confidence 46777777777777 77788888888887765
No 112
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.54 E-value=0.048 Score=51.51 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------HHhhcCC--CCCchhhHHHH-----------HHHHHHHHHHh
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRR-------DAVKRHS--NVPSQVLDVAV-----------SLAKVADVDRS 336 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~-------~~~~~~~--~~~~~~~dla~-----------sl~~l~~v~~~ 336 (392)
..+..++.++...|+.++|+..|+++|+..- ..+--.. ........+.. .+..+|.++..
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 4567788999999999999999999997531 1110000 00000001111 12336788888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 337 IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 337 lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+|++++|+..|++++ ..+|.+..++..++. ++.-.+....|+.++++|
T Consensus 227 lg~~~~Al~~~~~~~------~~~p~d~~~~~~~a~--~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 227 LGRYEEALEYLEKAL------KLNPDDPLWLLAYAD--ALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HT-HHHHHHHHHHHH------HHSTT-HHHHHHHHH--HHT---------------
T ss_pred ccccccccccccccc------ccccccccccccccc--cccccccccccccccccc
Confidence 899988888888866 667888888877777 899999999999998875
No 113
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.15 Score=48.22 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
....+.++..||..+..+|++++|+..|.++|++
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 3445567777788888888888888877777654
No 114
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.43 E-value=0.056 Score=51.79 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=59.8
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.+|..+..+|++..|+..++.+.+. .+ .-...+.++|.++...|++++|+..|++++++ .+.
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l----~P-------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~ 164 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLEL----DP-------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPN 164 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC
Confidence 3444555666677666666555432 22 12457889999999999999999999998753 333
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+. ...-++ .+....+++++|+..|++++..
T Consensus 165 ~~-------~~~~~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 165 DP-------YRALWL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred CH-------HHHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence 22 111122 2344568899999999886644
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.42 E-value=0.13 Score=44.38 Aligned_cols=62 Identities=6% Similarity=-0.076 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.+-.++...+..|++++|...|+-...+- + ..+.-.-+||.+...+|++++|+..|..++.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p-------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-------A-------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------c-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46677888889999999999998776541 1 12445567899999999999999999999843
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.21 E-value=0.061 Score=54.76 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------Hhhc--CCCCCc----
Q 016262 253 YFADSVEFLMKLPM-DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD-------AVKR--HSNVPS---- 318 (392)
Q Consensus 253 ~~e~~~~~~~~L~~-~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~-------~~~~--~~~~~~---- 318 (392)
+.+..++...++.. .+.+ ...-||.|++..|++++|++.|+.+|.+.=. +... ...+..
T Consensus 413 i~~~fLeaa~~~~~~~Dpd-------vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPD-------VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHhCCCCCChh-------HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHH
Confidence 33344555555553 2333 3467899999999999999999999975311 0000 000000
Q ss_pred -------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHh
Q 016262 319 -------QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKN 381 (392)
Q Consensus 319 -------~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~ 381 (392)
.+...+.+..|||..+.++|.|++|+.+|-.||.|.++-..+.+...- +..+|.-|+.
T Consensus 486 AY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~-----se~iw~tLR~ 550 (579)
T KOG1125|consen 486 AYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMA-----SENIWQTLRL 550 (579)
T ss_pred HHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcc-----hHHHHHHHHH
Confidence 000122233456666777777777777777777666655554443222 3445555553
No 117
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.19 E-value=0.054 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
|..+.++|.++..+|++++|+..|++++++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4567889999999999999999999999863
No 118
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.0034 Score=43.18 Aligned_cols=42 Identities=38% Similarity=0.740 Sum_probs=34.3
Q ss_pred eeccccccccccCceecccCcH-hHHHhHHhcC-----CCCCCCcCCcc
Q 016262 90 LSCMICQALLFECSKCTPCSHV-YCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
-.|.||.+-.. +.+...|||. +|..|-.+.| .||.||.++..
T Consensus 8 dECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 57999999988 8999999994 5899976654 39999987654
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.10 E-value=0.037 Score=40.83 Aligned_cols=86 Identities=19% Similarity=0.345 Sum_probs=60.0
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++..++.+++...+. ..... .....++.++...+++++|+..|++++.+. +..
T Consensus 12 ~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------ 67 (100)
T cd00189 12 KLGDYDEALEYYEKALEL----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELD-------PDN------ 67 (100)
T ss_pred HHhcHHHHHHHHHHHHhc----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Ccc------
Confidence 456667777776655332 22111 456788888888899999999888877642 111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...+..++.++..+|++++|...+++++.+
T Consensus 68 -~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 68 -AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 145667788899999999999999887753
No 120
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.10 E-value=0.018 Score=43.96 Aligned_cols=42 Identities=26% Similarity=0.629 Sum_probs=29.7
Q ss_pred eeccccccccccCc-eecccCcHhHHHhHHhcC-------CCCCCCcCCc
Q 016262 90 LSCMICQALLFECS-KCTPCSHVYCKACISRFK-------DCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~ 131 (392)
-.||.|.---.+.| +.-.|+|.|-..||.+|. .||+||+...
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34666665433334 344699999999999993 3999998653
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.08 E-value=0.13 Score=42.52 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=65.5
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
++......|++.+|...++.... +.+... .....++.++...|++++|+..|++++++ .+.
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~p~- 83 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAA----YDPYNS-------RYWLGLAACCQMLKEYEEAIDAYALAAAL-------DPD- 83 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHH----hCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCC-
Confidence 33444467777777777655433 233222 45678888998889999999999887764 222
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
....+.++|.++..+|++++|+..|++++++
T Consensus 84 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 ------DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1445677899999999999999999888754
No 122
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.05 E-value=0.0095 Score=41.37 Aligned_cols=42 Identities=31% Similarity=0.912 Sum_probs=33.3
Q ss_pred eeccccccccccCceecccCcHhHHHhHH--hcCCCCCCCcCCcc
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACIS--RFKDCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~--~~~~CP~C~~~~~~ 132 (392)
..|-.|...-. ..++++|||..|..|.. ++..||.|..++..
T Consensus 8 ~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGT-KGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccccc-ccccccccceeeccccChhhccCCCCCCCcccC
Confidence 45667777645 78999999999999975 45789999987653
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.96 E-value=0.067 Score=57.23 Aligned_cols=95 Identities=2% Similarity=-0.188 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
......|+.+...+|.+++|...++.+++. .+.+ +..+.+++.+..+++++++|+..+++++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-------~Pd~-------~~a~~~~a~~L~~~~~~eeA~~~~~~~l---- 147 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR-------FPDS-------SEAFILMLRGVKRQQGIEAGRAEIELYF---- 147 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHh----
Confidence 467789999999999999999888876654 4443 4455667788899999999998888766
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...|+++..+..++. .+..+++|.+|+.+|+++
T Consensus 148 --~~~p~~~~~~~~~a~--~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 148 --SGGSSSAREILLEAK--SWDEIGQSEQADACFERL 180 (694)
T ss_pred --hcCCCCHHHHHHHHH--HHHHhcchHHHHHHHHHH
Confidence 778999999999999 999999999999999874
No 124
>PRK12370 invasion protein regulator; Provisional
Probab=94.95 E-value=0.073 Score=55.69 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHh
Q 016262 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQR 369 (392)
Q Consensus 290 g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~ 369 (392)
+++++|+..+++++++ ++.+ +..+..+|.++..+|++++|+..|+++++ ..|..+.....
T Consensus 318 ~~~~~A~~~~~~Al~l-------dP~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~------l~P~~~~a~~~ 377 (553)
T PRK12370 318 NAMIKAKEHAIKATEL-------DHNN-------PQALGLLGLINTIHSEYIVGSLLFKQANL------LSPISADIKYY 377 (553)
T ss_pred hHHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHH
Confidence 4466666666665543 4442 44566788999999999999999998874 46666666666
Q ss_pred hcchhHHHHHHhhhccccchhcC
Q 016262 370 CWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 370 ~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++. ++..++++.+|+..|++|
T Consensus 378 lg~--~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 378 YGW--NLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHH--HHHHCCCHHHHHHHHHHH
Confidence 666 666777777777776653
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.94 E-value=0.15 Score=46.55 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=74.8
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
.+..+...|++..|+..+++..... +.. .........++.++...|++++|+..|++.++.. +.+
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~----p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~ 103 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRY----PFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PNH 103 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cCC
Confidence 3444446777777777776553321 111 1223466888999999999999999999887532 222
Q ss_pred CchhhHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhh---------------cch
Q 016262 317 PSQVLDVAVSLAKVADVDRSI--------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRC---------------WNS 373 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~l--------g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~---------------~~~ 373 (392)
. ++...+..+|.++..+ |++++|+..|++++. .+|........+ ...
T Consensus 104 ~----~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 104 P----DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR------RYPNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred C----chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH------HCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233455556555544 666677776666653 333332111110 111
Q ss_pred hHHHHHHhhhccccchhc
Q 016262 374 STTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 374 ~~~~~l~~~~~~l~~~~~ 391 (392)
+.+...+++..|+.+|+.
T Consensus 174 ~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHcCChHHHHHHHHH
Confidence 245566777777777764
No 126
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.89 E-value=0.23 Score=48.21 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHH-----HHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV-----AVDGFQE 349 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~-----A~~~~~~ 349 (392)
-+..+.-+++||...|+++.|-..|++++.++..+.++..+ ...|..++..+..+.-..+ |+++-++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--------v~al~g~Akc~~~~r~~~k~~~Crale~n~r 316 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--------VEALDGAAKCLETLRLQNKICNCRALEFNTR 316 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34566778999999999999999999999999998777665 4445555555555544444 9999999
Q ss_pred HHHHHHHh
Q 016262 350 AIKRLESL 357 (392)
Q Consensus 350 al~ile~l 357 (392)
.+++-.++
T Consensus 317 ~levA~~I 324 (518)
T KOG1941|consen 317 LLEVASSI 324 (518)
T ss_pred HHHHHHHh
Confidence 99988887
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.88 E-value=0.025 Score=57.44 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=70.6
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
+|.++...|++.++++.|+.++... +.+ ...+|+||.....-.+.++|++.|.++|+++ +.=
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~----Pnd-------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------P~y 497 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK----PND-------YLLWNRLGATLANGNRSEEAISAYNRALQLQ-------PGY 497 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC----Cch-------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-------CCe
Confidence 3446667778889999888765432 212 2468999999988899999999999999864 222
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
+-..+.++.+--|+|.-....+++=.|+..-+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 223347888889999888888888888887665
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.86 E-value=0.28 Score=39.01 Aligned_cols=92 Identities=18% Similarity=0.240 Sum_probs=64.5
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++.+|+.+++...... +.. .........++.++...|+++.|+.+|++.+.. .+.+. .
T Consensus 14 ~~~~~~~A~~~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~ 74 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKY----PKS----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-------YPKSP----K 74 (119)
T ss_pred HcCCHHHHHHHHHHHHHHC----CCc----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-------CCCCC----c
Confidence 5677777887776664321 111 112345677999999999999999999987743 22211 2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...++..+|.++..+|++++|+..|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 2456788899999999999999999887754
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.79 E-value=0.29 Score=46.13 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.+.-++|.+++..|++++|+..|++.++. .+.+. .....+-++|.++..+|+.++|+..|++.++.
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-------yP~s~----~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKN-------YPKSP----KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCCc----chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999998876643 23322 23566788899999999999999999887643
No 130
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.72 E-value=0.014 Score=56.42 Aligned_cols=42 Identities=31% Similarity=0.847 Sum_probs=36.7
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhcC------CCCCCCcCCcc
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
-.|.||-+-=. +..+-||||..|..|+..|. .||.||..+..
T Consensus 370 eLCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 46999999855 89999999999999999994 39999998876
No 131
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.71 E-value=0.027 Score=40.48 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=46.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+|.++...|++++|+..|++++ ...|.+......++. ++..++++.+++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~lg~--~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLLGR--ILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHHHH--HHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 5677888899999888888876 777999999999999 999999999999999863
No 132
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.16 Score=48.60 Aligned_cols=57 Identities=23% Similarity=0.627 Sum_probs=44.6
Q ss_pred eecccccccccc-----CceecccCcHhHHHhHHhc-----CCCCCCCcCCcc-------cchhhHHHHHHHHH
Q 016262 90 LSCMICQALLFE-----CSKCTPCSHVYCKACISRF-----KDCPLCGADIEK-------IEADTTLQDVVDRF 146 (392)
Q Consensus 90 ~~C~iC~~~~~~-----~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~-------~~~n~~l~~~~~~~ 146 (392)
+.|-||-+.+.. .|+.+.|||+||..|+... +.||.||.+... +..|+.+...+...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 567788776553 4899999999999999876 359999998432 77788887777766
No 133
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.14 Score=52.89 Aligned_cols=90 Identities=22% Similarity=0.175 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
+.+--+|.++.++|+.++|+.+|++|+.+ ++.++-.. -+.+.++..++++.+|+. .||+
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~l-------d~kn~l~~-------~~~~~il~~~~~~~eal~-------~LEe 582 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHL-------DPKNPLCK-------YHRASILFSLGRYVEALQ-------ELEE 582 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhc-------CCCCchhH-------HHHHHHHHhhcchHHHHH-------HHHH
Confidence 34455677787777777777777776543 33333222 234566777777776665 4555
Q ss_pred h-hcCCCchhHHHhhcchhHHHHHHhhhccccch
Q 016262 357 L-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 389 (392)
Q Consensus 357 l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~ 389 (392)
| ..-|.++...-+++. ++..+++...||.-|
T Consensus 583 Lk~~vP~es~v~~llgk--i~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 583 LKELVPQESSVFALLGK--IYKRLGNTDLALLHF 614 (638)
T ss_pred HHHhCcchHHHHHHHHH--HHHHHccchHHHHhh
Confidence 5 667888888878888 777888777776544
No 134
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.37 E-value=0.29 Score=38.29 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 288 ~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~ 362 (392)
..|++.+|++.+.+..+.......... ...+...+-+++.+...+|+.++|+..+++++.+-++..+...
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~ 79 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRC 79 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 358899999988888877655332221 2245666778999999999999999999999999999855433
No 135
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.37 E-value=0.18 Score=45.34 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=66.9
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHHHHH
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGD--LQAARSYYVRSLNVRRD 308 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l-~~~~g~--l~~A~~~~e~aL~i~~~ 308 (392)
+.+..+|..+..+|++..|+..++.+.. +.+...+ .+..++.+ +...|+ .++|+..+++++
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~-------~~~~lA~aL~~~~g~~~~~~A~~~l~~al----- 137 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAE-------LYAALATVLYYQAGQHMTPQTREMIDKAL----- 137 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHH-------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH-----
Confidence 4455566677688899999888876643 4444443 44566664 455565 366666666555
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
..++.+ ...+..+|.++..+|++++|+.+|++++++
T Consensus 138 --~~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 138 --ALDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred --HhCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445543 456788999999999999999999998744
No 136
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.32 E-value=0.12 Score=31.81 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
..+..+|.++..+|++++|+.+|++++++-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456788999999999999999999999874
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.19 E-value=0.16 Score=42.98 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..-.++.++...|++++|+..|++.+... +.. ....+ ..-+++.++..+|++++|+..+++ +
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-------~d~--~l~~~--a~l~LA~~~~~~~~~d~Al~~L~~-------~ 111 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA-------PDP--ELKPL--ARLRLARILLQQGQYDEALATLQQ-------I 111 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CCH--HHHHH--HHHHHHHHHHHcCCHHHHHHHHHh-------c
Confidence 44557888888999999999999877532 110 11122 234678899999999988887644 3
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+-.+.....++. ++-..+++.+|+..|++|
T Consensus 112 ~~~~~~~~~~~~~Gd--i~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 112 PDEAFKALAAELLGD--IYLAQGDYDEARAAYQKA 144 (145)
T ss_pred cCcchHHHHHHHHHH--HHHHCCCHHHHHHHHHHh
Confidence 333334444555555 888899999999999876
No 138
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.17 E-value=0.14 Score=31.37 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
..+-.+|.++..+|++++|+..|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999976
No 139
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.13 E-value=0.41 Score=42.88 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
..-+..++.-|+-.+.-|+|++|.+.|..+|++.-..-.. .-+..+.|-|.....|+.++.|+..-.+||
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e---------~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE---------ERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH---------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 4556678888999999999999999999999875432211 113345556666666666666666555555
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.11 E-value=0.59 Score=35.35 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=54.5
Q ss_pred ccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHH
Q 016262 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dl 323 (392)
.|++..|+.+++...+.... . . -...+-.++..+...|++++|+..+++ +.+... .
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----~----~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-------------~- 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----N----P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-------------N- 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----T----H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-------------H-
T ss_pred CccHHHHHHHHHHHHHHCCC----C----h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-------------C-
Confidence 45667788887766544332 1 0 122455589999999999999999987 222111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
....--+|.++..+|++++|+..|+++
T Consensus 58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 112224489999999999999999875
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.07 E-value=0.31 Score=45.89 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~ 360 (392)
..-.+....|++++|+..|++.++ ..+... .....+-|+|.++..+|++++|+..|+..++.. ..+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~-------~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s 213 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVK-------KYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKS 213 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-------HCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCC
Confidence 333444445788888877766554 344432 234567899999999999999999988876433 344
Q ss_pred CCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 361 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 361 ~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+.....+..++. .+..++++.+++.+|++
T Consensus 214 ~~~~dAl~klg~--~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 214 PKAADAMFKVGV--IMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred cchhHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 555556666666 67778888888888864
No 142
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.97 E-value=0.16 Score=31.22 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~ 306 (392)
..+.++|.++..+|++++|+..|+++|++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467899999999999999999999999863
No 143
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.037 Score=53.82 Aligned_cols=50 Identities=28% Similarity=0.693 Sum_probs=37.5
Q ss_pred eecccccccccc----CceecccCcHhHHHhHHhc------CCCCCCCcCCcc--cchhhHH
Q 016262 90 LSCMICQALLFE----CSKCTPCSHVYCKACISRF------KDCPLCGADIEK--IEADTTL 139 (392)
Q Consensus 90 ~~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~--~~~n~~l 139 (392)
..||||++-+.. ..+.+.|||.|-..||++| +.||.|...... +.+...+
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYAL 66 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHH
Confidence 579999997663 2567889999999999999 359999865544 4444333
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.70 E-value=0.48 Score=40.04 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=59.6
Q ss_pred ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~ 319 (392)
.....|++.+|...++...... ....+. ....-.|+.++...|++++|+..+++.. ...
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L~~~~-----------~~~-- 115 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALANA-----PDPELK---PLARLRLARILLQQGQYDEALATLQQIP-----------DEA-- 115 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC-----CCHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhcc-----------Ccc--
Confidence 3346778888887777654421 112222 2345578899999999999998875410 101
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+ -......+|+++..+|+.++|+..|++|+
T Consensus 116 -~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 -F-KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -h-HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1 13344568999999999999999999875
No 145
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.68 E-value=1.8 Score=35.67 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~-~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
...+++...+.+++-.++-.|+++|.+.++........ ...++--+.+--||+..|+.+|+-+-.+.|++-|-+....|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 34567777778889999999999999998874333222 22223334566799999999999999999999888877777
Q ss_pred -hc--CCCchhHHHhhc--chhHHHHHHhhh
Q 016262 358 -TL--KPEEAGLEQRCW--NSSTTNFQKNHL 383 (392)
Q Consensus 358 -~~--~~~~a~l~~~~~--~~~~~~~l~~~~ 383 (392)
.. +++-..+-..++ ...+++|++++.
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F~KRHP 114 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDFMKRHP 114 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHHHHhCC
Confidence 11 122222222332 123677777653
No 146
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.56 E-value=0.26 Score=35.95 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
..++...+++++|+..+++++.+ .+.+ ...+...|.++..+|++++|+..|+++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-------DPDD-------PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-------Cccc-------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677889999999998888766 3332 33455678999999999999999999884
No 147
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.068 Score=49.26 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=35.3
Q ss_pred Cceecccccccccc---------CceecccCcHhHHHhHHhcC------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFE---------CSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---------~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
++..|.||-.-+.. ....+.|+|+|=..||..|. .||.|+..+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 35678888876542 34578999999999999993 49999987764
No 148
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.042 Score=52.38 Aligned_cols=51 Identities=27% Similarity=0.567 Sum_probs=39.8
Q ss_pred CCCCCCccCceeccccccccccCceecccCcHhHHHhHHhc----CCCCCCCcCCc
Q 016262 80 YDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 80 ~~~~~~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
++.+-...++..||||-.-.. ..+..||+|.-|+.||.++ +.|=.|+..+.
T Consensus 413 ~~~~lp~sEd~lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 413 FNKDLPDSEDNLCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred hcCCCCCcccccCcceecccc-hhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 333444557889999999877 8899999999999999987 34777776544
No 149
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.68 Score=46.38 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=78.5
Q ss_pred cchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----------------
Q 016262 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD---------------- 308 (392)
Q Consensus 245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~---------------- 308 (392)
++|.+|+.+|+.++.. .+....++.-||-=+..+.+-.+|+..|..|++|-..
T Consensus 344 ~eHEKAv~YFkRALkL-----------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKL-----------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred HhHHHHHHHHHHHHhc-----------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 4456677777665432 3334457788888888888999999999999986321
Q ss_pred -----------HhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHH
Q 016262 309 -----------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTN 377 (392)
Q Consensus 309 -----------~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~ 377 (392)
+..-.+.. ...+.-||+.|.++++.++|+.-|..|+.. ..-+...+..++. ++.
T Consensus 413 Mh~YaLyYfqkA~~~kPnD-------sRlw~aLG~CY~kl~~~~eAiKCykrai~~------~dte~~~l~~Lak--Lye 477 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPND-------SRLWVALGECYEKLNRLEEAIKCYKRAILL------GDTEGSALVRLAK--LYE 477 (559)
T ss_pred chHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHhc------cccchHHHHHHHH--HHH
Confidence 11112221 223445788888899988888888887732 1123345556666 777
Q ss_pred HHHhhhccccchhc
Q 016262 378 FQKNHLNQLPKFRS 391 (392)
Q Consensus 378 ~l~~~~~~l~~~~~ 391 (392)
.|+++.+|-.||.+
T Consensus 478 ~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEK 491 (559)
T ss_pred HHHhHHHHHHHHHH
Confidence 77777777666653
No 150
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=1.2 Score=41.01 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016262 340 EDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 340 ~~~A~~~~~~al~ile~l 357 (392)
+..-++.|.++++|++++
T Consensus 163 yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555555
No 151
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.31 E-value=0.84 Score=49.45 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+.-.++.++. +++.-.++.+|..++.+.......-+ ...|+|+|.....+|++.+|...|.+|+..+...
T Consensus 416 a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip---------~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 416 AWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIP---------PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCC---------HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 3444455543 35566669999999988877554422 5679999999999999999999999999997765
Q ss_pred -hcCC---CchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 358 -TLKP---EEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 358 -~~~~---~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+.+. -+-.+..+++. ++.-++++..|-.+|.
T Consensus 486 ~n~de~~~~~lt~~YNlar--l~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLAR--LLEELHDTEVAEEMYK 520 (1018)
T ss_pred cCccccccchhHHHHHHHH--HHHhhhhhhHHHHHHH
Confidence 2211 12223555555 5666655555555553
No 152
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.013 Score=54.54 Aligned_cols=41 Identities=32% Similarity=0.704 Sum_probs=35.7
Q ss_pred ceeccccccccccCceecccCc-HhHHHhHHhcCCCCCCCcCC
Q 016262 89 PLSCMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADI 130 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h-~fC~~Ci~~~~~CP~C~~~~ 130 (392)
...|.||.+..+ +=+.++||| .-|..|=.++..||.||+.+
T Consensus 300 ~~LC~ICmDaP~-DCvfLeCGHmVtCt~CGkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR-DCVFLECGHMVTCTKCGKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc-ceEEeecCcEEeehhhccccccCchHHHHH
Confidence 467999999988 889999999 45999988888999999744
No 153
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.22 E-value=0.059 Score=49.16 Aligned_cols=58 Identities=26% Similarity=0.623 Sum_probs=40.9
Q ss_pred eeccccccccccC-ceecccCcHhHHHhHHhc-C-CCCCCCcCCcccchhhHHHHHHHHHH
Q 016262 90 LSCMICQALLFEC-SKCTPCSHVYCKACISRF-K-DCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 90 ~~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~~-~-~CP~C~~~~~~~~~n~~l~~~~~~~~ 147 (392)
..|..|......+ =+++.|+|.||..|.... . .||+|+.++..+..|..|..-+..++
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~~ik~~F 64 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPTDIKSYF 64 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccchhHHHHc
Confidence 5677776653322 357789999999998755 3 69999999877666655555555554
No 154
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.20 E-value=0.54 Score=39.28 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.+..-|.....-|+++.|+..|.++|.+.-+ -+..++|-+..++.+|+-++|++-+++++++
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~--------------raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE--------------RASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc--------------chHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3344455555668888888888888765411 1344555555555555555555555555543
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.96 E-value=0.3 Score=29.77 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
..+..+|.++..+|++++|+..|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876
No 156
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.78 E-value=0.33 Score=45.81 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
...++.++..+|+.++|+.+|++++.. .+.+ ...+..+|+++...|+.++|...+++++..++
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~-------~p~d-------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKL-------NPDD-------PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHhccccccccccccccccccc-------cccc-------cccccccccccccccccccccccccccccccC
Confidence 356688888888888999888886643 3332 34566889999999999999999999987765
No 157
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.52 Score=47.80 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--H----------hhcCCCCCchhhHHHHHHHHHHHHHHhcCCHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--A----------VKRHSNVPSQVLDVAVSLAKVADVDRSIGNED 341 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~--~----------~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~ 341 (392)
.|+..+..+|..+...++++.++.+|+++|...|. . ..........-.+++...-.-|.-....|++.
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 37788888999999999999999999999985542 1 10000000111134444444577778889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 342 VAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 342 ~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+|+.+|.+||+. .|+++.+-.+++.
T Consensus 376 ~Av~~YteAIkr------~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 376 EAVKHYTEAIKR------DPEDARLYSNRAA 400 (539)
T ss_pred HHHHHHHHHHhc------CCchhHHHHHHHH
Confidence 999999997743 3555544444433
No 158
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.59 E-value=0.75 Score=40.49 Aligned_cols=74 Identities=11% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcc
Q 016262 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWN 372 (392)
Q Consensus 295 A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~ 372 (392)
.+-+|+++.+..+..+..++.....+...+..|-.|+. .....++...+++|+.-+++- ..+|..+..+..++.
T Consensus 3 rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAq----fk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 3 RLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQ----FKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45678888888888888888755444444444444433 244456777888888888886 888999888888887
No 159
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.89 Score=45.56 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=73.2
Q ss_pred HHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 227 C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~ 306 (392)
||.--+...-+|+.+-.++.|-=|+-+++.+ .++.+.++ ..+.-||+.+.+++++++|+..|..++..-
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA----~~~kPnDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKA----LELKPNDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHH----HhcCCCch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 3333333333445554445554455566554 33444333 357789999999999999999999887542
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
. ++ ...|..||++++.+++.++|..+|++-++.....
T Consensus 463 d------te--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 463 D------TE--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred c------cc--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 2 22 4567889999999999999999999999877444
No 160
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.48 E-value=0.36 Score=29.50 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~ 307 (392)
..+..+|.++..+|++++|+.+|++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577899999999999999999999998753
No 161
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.14 E-value=0.27 Score=47.71 Aligned_cols=97 Identities=11% Similarity=-0.082 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
......++.++...|++++|+..|++++++. +.+ ...+..++.++..+|++++|+..+++++....
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3456678888888899999999888887652 221 33456678888888888888888888765433
Q ss_pred HhhcCCCch-hHHHhhcchhHHHHHHhhhccccchhc
Q 016262 356 SLTLKPEEA-GLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 356 ~l~~~~~~a-~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
. .+... .....++. .+..++++.+++.+|++
T Consensus 180 ~---~~~~~~~~~~~la~--~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 180 C---SSMLRGHNWWHLAL--FYLERGDYEAALAIYDT 211 (355)
T ss_pred C---CcchhHHHHHHHHH--HHHHCCCHHHHHHHHHH
Confidence 2 11110 01112223 45566677777666654
No 162
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.99 E-value=0.1 Score=43.10 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=36.8
Q ss_pred ceeccccccccccCceecc---cCcHhHHHhHHhcC-------CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTP---CSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~---C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
-..|.||.+...++.+.-| ||-+.|..|-...| .||.|+.++.+
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4789999999886666665 99999999988766 39999987765
No 163
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.85 E-value=0.2 Score=50.16 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch---hHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA---GLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a---~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.+..+.|+|.++..+|++++|+..|+++++ ..|+.+ ....+++. .|..++++.+|+..|++|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAc--aya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKAC--CHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999999984 456665 34778888 888999999999888765
No 164
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.81 E-value=0.28 Score=46.11 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=37.6
Q ss_pred cCceecccccccccc---CceecccCcHhHHHhHHhcC---CCCCCCcCCcc
Q 016262 87 IGPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
...+.|||....|.. -..+.+|||+|+..+|.+.. .||.|..++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 357999999988742 13456999999999999886 69999999876
No 165
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=1.3 Score=45.04 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=85.1
Q ss_pred ccccccchhHHHhHHHHHHHHHHh------C---------CCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMK------L---------PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~------L---------~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
....++++..++.+++.++...+. + .....-+...++...+.-|+-....|+|.+|+..|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 344455566677777665333222 1 1111222334455666668888888999999999998653
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhc
Q 016262 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLN 384 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~ 384 (392)
. .++ -+..++|.+..|..+|++..|+.-.+.++++ +|.....-.+=+. .+.++++|.+
T Consensus 387 r-------~P~-------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~--al~~mk~ydk 444 (539)
T KOG0548|consen 387 R-------DPE-------DARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGA--ALRAMKEYDK 444 (539)
T ss_pred c-------CCc-------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHH--HHHHHHHHHH
Confidence 3 333 3778899999999999999999987777755 3333221111133 6788999999
Q ss_pred cccchhcC
Q 016262 385 QLPKFRSA 392 (392)
Q Consensus 385 ~l~~~~~~ 392 (392)
+++-|+.|
T Consensus 445 Aleay~ea 452 (539)
T KOG0548|consen 445 ALEAYQEA 452 (539)
T ss_pred HHHHHHHH
Confidence 99888764
No 166
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.52 E-value=5.3 Score=36.37 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=70.1
Q ss_pred hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 016262 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl 327 (392)
..|+..+.-+.-........ ...++...-+|.-++..+++-+....++.+|++...++.+....... ..+-+..+
T Consensus 94 ~~ai~~YkLAll~~~~~~~~----~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~~~l~ 168 (214)
T PF09986_consen 94 EEAIESYKLALLCAQIKKEK----PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-GMDEATLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-CchHHHHH
Confidence 44555554443333333222 22567777888889989999999999999999999998877654332 22334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
=-+|++...+|++++|+..|.+.+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567999999999999999998866
No 167
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.42 E-value=0.44 Score=30.72 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..+..||++...-+++..|+.-|+++++|.+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999986
No 168
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=0.61 Score=47.02 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+...+..+++.|+-.+..|.|++|+.||.++++.--. + .+-.+|.+..|..+|++++.++.-.+|+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------e--------piFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------E--------PIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------C--------chhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 3456778889999999999999999999999865322 1 3456788888888888888877766666
Q ss_pred HHHHHhhcCCCchhHHHhhcchhHHHHHHhhhcc
Q 016262 352 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~ 385 (392)
++.|+-...+.++.+ ...-|+++..+
T Consensus 177 ------El~P~Y~KAl~RRA~--A~E~lg~~~ea 202 (606)
T KOG0547|consen 177 ------ELNPDYVKALLRRAS--AHEQLGKFDEA 202 (606)
T ss_pred ------hcCcHHHHHHHHHHH--HHHhhccHHHH
Confidence 455555555545544 33444444433
No 169
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.28 E-value=2.7 Score=34.58 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCch--h
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA--G 365 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a--~ 365 (392)
.|.+++|...|.+++++.+..-.++.= .-.-|| |.-...|+.....||+|.+++.--+.++-.+... +++.+.- +
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaF-Dh~GFD-A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAF-DHDGFD-AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS----HHHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhc-ccccHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 478899999999999887653211100 001134 5667788999999999999999999999888877 5553322 2
Q ss_pred HHHhhcchhHHHHHHhhhccccchhcC
Q 016262 366 LEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 366 l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.-.+...-.++-++....+|++||.|
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 221111111367888899999988753
No 170
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.12 Score=48.70 Aligned_cols=43 Identities=30% Similarity=0.725 Sum_probs=32.0
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhc--CCCCCCCcCCc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
...|.-|---+..=-+.++|.|.||..|.... +.||.|...+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHH
Confidence 46788886544435688999999999997654 57999976443
No 171
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=1.2 Score=40.86 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
+..|.+--+++..+|++..|..++.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~ 118 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIE 118 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhh
Confidence 44555555666666666655444333
No 172
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.07 E-value=1.2 Score=48.84 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=8.5
Q ss_pred cccchhHHHhHHHHH
Q 016262 243 AMGDADAAVAYFADS 257 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~ 257 (392)
..|++..|+..+++.
T Consensus 46 r~Gd~~~Al~~L~qa 60 (822)
T PRK14574 46 RAGDTAPVLDYLQEE 60 (822)
T ss_pred hCCCHHHHHHHHHHH
Confidence 556666555555544
No 173
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=1.3 Score=44.76 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=60.5
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc----hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~----~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~ 307 (392)
++..+|..+-..++++..|+..|+.+-+......... .-+.+.+- .+. . .+++..|+....+++
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~q------w-k~d~~~a~~Ll~KA~---- 530 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQ------W-KEDINQAENLLRKAI---- 530 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhc------h-hhhHHHHHHHHHHHH----
Confidence 4455566655467777888888876644332211111 11111111 111 1 145555555555544
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+-++. .|+| ...||.+..++|+.++|+++|++++.+-+..
T Consensus 531 ---e~Dpk-----ce~A--~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 531 ---ELDPK-----CEQA--YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred ---ccCch-----HHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 33433 1333 5778999999999999999999999887765
No 174
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=0.16 Score=46.24 Aligned_cols=44 Identities=18% Similarity=0.392 Sum_probs=36.7
Q ss_pred ceeccccccccccC---ceecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.+.||+|.+.|.+. .+..+|||+||..|++.+. .||.|..++..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 58899999998853 4567899999999999983 59999887654
No 175
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=90.46 E-value=0.043 Score=40.68 Aligned_cols=43 Identities=28% Similarity=0.801 Sum_probs=19.9
Q ss_pred ceeccccccccccC---c--eec--ccCcHhHHHhHHhcC---------------CCCCCCcCCc
Q 016262 89 PLSCMICQALLFEC---S--KCT--PCSHVYCKACISRFK---------------DCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~~---p--~~~--~C~h~fC~~Ci~~~~---------------~CP~C~~~~~ 131 (392)
++.|+||..++.+. | +.. .|+..|=..|+.+|. .||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999985512 2 222 688888889999882 2999998765
No 176
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.09 E-value=1.3 Score=33.14 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCch
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEA 364 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a 364 (392)
+.|..+...+.-....|++++|+.+|++++++|.++ ..-|++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 346667777777888999999999999999999998 6655554
No 177
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.95 E-value=0.78 Score=29.56 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
..+..||++-...++++.|+..|.++|++++...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999998865
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.90 E-value=0.13 Score=54.55 Aligned_cols=39 Identities=33% Similarity=0.738 Sum_probs=33.5
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhcC------CCCCCCcCC
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADI 130 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~ 130 (392)
+.|.+|.+ .. .++...|+|.||..|+...+ .||.|+..+
T Consensus 455 ~~c~ic~~-~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 79999999 45 99999999999999998774 399998643
No 179
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.85 E-value=1.1 Score=43.23 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
.+.||..+..+|-+.+|..+++++|+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q 252 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ 252 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc
Confidence 467899999999999999999988864
No 180
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.59 E-value=3.5 Score=44.31 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHhhhchhhHHHHhhhcHHHH--HHHHHhcC-CCh--HHHHHH-----HhhhcccccccccccchhHHHhHHHHHH----
Q 016262 193 AFRAQNVESAKSRLSLCTEDI--RDQIERMG-NTS--ELCSQL-----GAVLGMLGDCCRAMGDADAAVAYFADSV---- 258 (392)
Q Consensus 193 ~~~~g~~~~A~~~l~~c~~~~--~~~l~~~~-~~~--~~C~~h-----~~~L~~fC~~C~~~gdhh~a~~~~e~~~---- 258 (392)
|+.-|-+++|+..+..|..+- -..+...+ +.. ++-..| ......|-..-...+|-..|+.+|+.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 666777888888888887552 11222111 111 121211 1122222222224556677888888662
Q ss_pred HHHHhCCCCchHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------HhhcCCCCCch
Q 016262 259 EFLMKLPMDDLEIIHTL-----SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--------------AVKRHSNVPSQ 319 (392)
Q Consensus 259 ~~~~~L~~~~~e~~~~l-----~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~--------------~~~~~~~~~~~ 319 (392)
+.-+-|...-..+.+.+ ...+++.|......|+++.|+.+|+.+-+-.-- ...+...
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esg---- 965 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESG---- 965 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcc----
Confidence 22222222111222211 234566677778889999999999998764321 0111111
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|.|.. -.||-.|++.|+..+|+-+|.+|...---+
T Consensus 966 --d~AAc-YhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 966 --DKAAC-YHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred --cHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22322 257788888999999999888776654444
No 181
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.52 E-value=4.1 Score=31.72 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=55.3
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..+++..|+......-+....-..... ...+..++-+++.+....|++++|+..+++++++.++..+.. -
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~--~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~--------~ 79 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSS--NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR--------C 79 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchh--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH--------H
Confidence 456676666665555444333222111 345677788899999999999999999999999998854332 3
Q ss_pred HHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVD 334 (392)
Q Consensus 323 la~sl~~l~~v~ 334 (392)
++..+.++..+.
T Consensus 80 l~~al~~~~~l~ 91 (94)
T PF12862_consen 80 LAYALSWLANLL 91 (94)
T ss_pred HHHHHHHHHHHh
Confidence 566666666543
No 182
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.44 E-value=2.2 Score=46.55 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+..+|.++..+|+.++|+..|++++ ...|.+..+...++. .+...+...+||..++
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al------~~~P~~~~~~~~la~--~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQAL------PRAPQTQQYPTEYVQ--ALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHH--HHHHCCChHHHHHHHH
Confidence 4455666667777777777666666 345666555544444 4444444444555544
No 183
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.33 E-value=1.7 Score=47.39 Aligned_cols=54 Identities=7% Similarity=-0.044 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~ 348 (392)
.++.++...|++++|+..|++++++ .+.+ ...+..++.++...|..++|+..++
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~-------~P~~-------~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPR-------APQT-------QQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCChHHHHHHHH
Confidence 3444555555555555555544432 2221 2222345556666666666665443
No 184
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.31 E-value=1.4 Score=44.15 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+..+|.++...|++++|+.+|+++..... .+. ......+|.++..+|+.++|..+|++++..+--+
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKE-----QLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 455679999999999999999995332221 222 2224588999999999999999999998877665
Q ss_pred h
Q 016262 358 T 358 (392)
Q Consensus 358 ~ 358 (392)
+
T Consensus 404 ~ 404 (409)
T TIGR00540 404 Q 404 (409)
T ss_pred c
Confidence 3
No 185
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.00 E-value=4 Score=44.49 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=73.8
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
+-+++.+|..+|.+..|+..|+......- .....+ .+.-|+.+|+..|.|.+|+.+... +....
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~--~~~~~~-------vl~~Lara~y~~~~~~eak~~ll~-------a~~~~ 746 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFY--KKNRSE-------VLHYLARAWYEAGKLQEAKEALLK-------ARHLA 746 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHH-------HHHHHHHHHHHhhhHHHHHHHHHH-------HHHhC
Confidence 34455566667888888888876654433 233444 455666677666666666665544 34456
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHh
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSI-----GNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~l-----g~~~~A~~~~~~al~ile~l 357 (392)
+.++...|+++..+.+++....+. .....|+..++.++++++.+
T Consensus 747 p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~l 795 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTEL 795 (1018)
T ss_pred CccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999999988655444 34457888889999999998
No 186
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=0.23 Score=51.16 Aligned_cols=40 Identities=28% Similarity=0.605 Sum_probs=32.3
Q ss_pred Cceecccccccccc---CceecccCcHhHHHhHHhcC--CCCCCCc
Q 016262 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGA 128 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~ 128 (392)
+.+.|+||+..|.. .|+.+-|||+.|+.|+.... .|| |..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCc
Confidence 35789999887764 59999999999999998763 588 544
No 187
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.88 E-value=0.51 Score=45.14 Aligned_cols=44 Identities=39% Similarity=0.868 Sum_probs=36.3
Q ss_pred cCceeccccccccccCceecccCcHhHHHhHHhc------CCCCCCCcCCc
Q 016262 87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIE 131 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~ 131 (392)
.+.-.|.||..-+. =.-++||+|..|..|-.+. +.||.||....
T Consensus 59 Een~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 35678999999877 7889999999999997665 57999997543
No 188
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=88.76 E-value=4.1 Score=37.91 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
..++-+|..+.+.|+.+.|...|.+++++.-. . ...++|+|-.+...|+++.|..++..+.
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-------~-------p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPN-------E-------PSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccC-------C-------chhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999999876432 1 2346888888888888888887776654
No 189
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.70 E-value=2.8 Score=46.11 Aligned_cols=59 Identities=5% Similarity=0.140 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+|-.+|.+|..+|+.++|...|++++ ..+|.++..+++++- .|... +..+|+.||.+|
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L------~~D~~n~~aLNn~AY--~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLV------KADRDNPEIVKKLAT--SYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH------hcCcccHHHHHHHHH--HHHHh-hHHHHHHHHHHH
Confidence 456678999999999999999999887 556999999999998 77777 999999999875
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.57 E-value=1.5 Score=28.76 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhc
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCW 371 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~ 371 (392)
.+..+|.++..+|++++|+..|++++ ..+|++......++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l------~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL------ALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH------HHCcCCHHHHHHhh
Confidence 34578999999999999999999987 56777766554443
No 191
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=88.54 E-value=1.2 Score=41.33 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+...|......|++..|+..+.+++.. .+.+ ...++-+|-++.++|+...|...|.|++++
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-------~p~d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L---- 163 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-------APTD-------WEAWNLLGAALDQLGRFDEARRAYRQALEL---- 163 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-------CCCC-------hhhhhHHHHHHHHccChhHHHHHHHHHHHh----
Confidence 3444777787778877777766655433 3332 556677899999999999999999998854
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhcccc
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLP 387 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~ 387 (392)
.+.++...++++. .+-.-+++..|-.
T Consensus 164 --~~~~p~~~nNlgm--s~~L~gd~~~A~~ 189 (257)
T COG5010 164 --APNEPSIANNLGM--SLLLRGDLEDAET 189 (257)
T ss_pred --ccCCchhhhhHHH--HHHHcCCHHHHHH
Confidence 4455555666665 3333344444333
No 192
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.45 E-value=0.32 Score=47.62 Aligned_cols=33 Identities=39% Similarity=1.020 Sum_probs=26.7
Q ss_pred Cceecccccccccc--CceecccCcHhHHHhHHhc
Q 016262 88 GPLSCMICQALLFE--CSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~ 120 (392)
.-+.|.||.+...- .-+-+||+|.||+.|+..+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence 35889999987541 4677899999999999776
No 193
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=88.41 E-value=9 Score=37.78 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
..+.-+|-++...+.+.+|..+|+.+++.+.+ +...+.+|+++.++|+...|-+.+++++-+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS---------------ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 35677899999999999999999988765544 6667899999999999999999999999444
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.23 E-value=4.3 Score=33.36 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=58.7
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
.+|++.+|+++|+++... -|.+.. ....+-.++..+..+|++++|+..+++.+. ..+... . .
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~--gL~~~~------~~~a~i~lastlr~LG~~deA~~~L~~~~~-------~~p~~~-~--~ 74 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAA--GLSGAD------RRRALIQLASTLRNLGRYDEALALLEEALE-------EFPDDE-L--N 74 (120)
T ss_pred hcCCHHHHHHHHHHHHHc--CCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCcc-c--c
Confidence 578889999999988552 333211 123555788888899999999998877653 222210 0 0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
...-..++.+...+|++++|+..+-+++
T Consensus 75 -~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 -AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111235678899999999998666544
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.18 E-value=2.4 Score=39.73 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
+..+.-+||+.++.+|+++.|...|...++ +.+.+. -.-..|=+||.+...+|+.++|...|++.++.+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-------~~P~s~----KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVK-------DYPKSP----KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHH-------hCCCCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 456788999999999999999999986554 333322 113678899999999999999999999877543
No 196
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=88.08 E-value=3.3 Score=41.46 Aligned_cols=106 Identities=8% Similarity=-0.011 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH-----------HHHhhcCCCCCchhhH-----------HH--HHHHHHHHHHH
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLNVR-----------RDAVKRHSNVPSQVLD-----------VA--VSLAKVADVDR 335 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~i~-----------~~~~~~~~~~~~~~~d-----------la--~sl~~l~~v~~ 335 (392)
-.++.++...|++++|...++++++.. +....-.+.+...... -. ..+..+|-++.
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 344566777788899988888888732 1111111222111111 12 44556788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 336 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 336 ~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+|++.+|.++|+.+.. +..+|+..... .++. ++..+++...+..+|+++
T Consensus 347 ~~~~~~~A~~~le~a~a----~~~~p~~~~~~-~La~--ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAA----CKEQLDANDLA-MAAD--AFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HcccHHHHHHHHHHhHH----hhcCCCHHHHH-HHHH--HHHHcCCHHHHHHHHHHH
Confidence 99999999999984321 13355554433 5555 888888888888888864
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.06 E-value=0.49 Score=34.47 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=43.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 331 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..++...+++++|+..+++++ ..+|.+..+....+. .+..++++..++..|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l------~~~p~~~~~~~~~a~--~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERAL------ELDPDDPELWLQRAR--CLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHH------HhCcccchhhHHHHH--HHHHhccHHHHHHHHHH
Confidence 457778889988888888877 457888888888888 88899999999888765
No 198
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=87.90 E-value=3.7 Score=44.29 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=59.2
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
|-..|-+|++++|...+. +.++. . +.+-.....++.++..+|++.++.-.+= ....|.+...
T Consensus 146 AN~lfarg~~eeA~~i~~---EvIkq----d-------p~~~~ay~tL~~IyEqrGd~eK~l~~~l----lAAHL~p~d~ 207 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILM---EVIKQ----D-------PRNPIAYYTLGEIYEQRGDIEKALNFWL----LAAHLNPKDY 207 (895)
T ss_pred HHHHHHhCCHHHHHHHHH---HHHHh----C-------ccchhhHHHHHHHHHHcccHHHHHHHHH----HHHhcCCCCh
Confidence 435788899999887764 22111 1 2234456667777767888766554432 2245555444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
..+..++++..++|.++.|+-+|.++++.
T Consensus 208 -------e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 208 -------ELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred -------HHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 34677888888888999999999988864
No 199
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.85 E-value=0.57 Score=44.85 Aligned_cols=62 Identities=21% Similarity=0.491 Sum_probs=44.2
Q ss_pred CccCceeccccccccccCceecccCcHhHHHhHHhc-CCCCCCCcCCcccchhhHHHHHHHHHH
Q 016262 85 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 85 ~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~~~~n~~l~~~~~~~~ 147 (392)
...+.+.||||.+.+..+...=+=||.-|..|-.+. ..||.|+.++..+ .+..+..+++...
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~-R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI-RCRAMEKVAEAVL 106 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccH-HHHHHHHHHHhce
Confidence 344678999999998734444445899999998544 6799999988854 4555555555543
No 200
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.73 E-value=6.5 Score=37.94 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=8.5
Q ss_pred hhhchhhHHHHhh
Q 016262 195 RAQNVESAKSRLS 207 (392)
Q Consensus 195 ~~g~~~~A~~~l~ 207 (392)
+||.++-|+..++
T Consensus 81 sRGEvDRAIRiHQ 93 (389)
T COG2956 81 SRGEVDRAIRIHQ 93 (389)
T ss_pred hcchHHHHHHHHH
Confidence 4677777776663
No 201
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.64 E-value=9.3 Score=35.52 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.++-+...+..|.++..+|+++..+..+....+++ +..|.+-+.+.+. .+-+.|+..|++++.++++-
T Consensus 76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtA--------AmaleKAak~len-v~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA--------AMALEKAAKALEN-VKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH--------HHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc
Confidence 33344444445556666666666665554433333 4445555544433 24456666777666666654
No 202
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=87.26 E-value=2.1 Score=41.49 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=61.5
Q ss_pred ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~ 319 (392)
+....|++..+...+++..+. .+.. ......++.+++..|++++|+.+|++.+..... .+.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~----~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~---- 183 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALEL----NPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSM---- 183 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhh----CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----Ccc----
Confidence 333456666666666555432 2222 245678899999999999999999988765322 111
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
-.....-.++.++..+|++++|+..|++++
T Consensus 184 --~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 184 --LRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred --hhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 012223457889999999999999999985
No 203
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=0.29 Score=47.17 Aligned_cols=44 Identities=30% Similarity=0.767 Sum_probs=33.5
Q ss_pred CceeccccccccccCceecccCcHhH-HHhHHhcCCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYC-KACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC-~~Ci~~~~~CP~C~~~~~~ 132 (392)
.+..|.||++-.. +.+-+||||..| -.|-.....||.||..+..
T Consensus 304 ~p~lcVVcl~e~~-~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK-SAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCcc-ceeeecCCcEEEchHHHhhCCCCchhHHHHHH
Confidence 4678999999988 789999999876 2233333569999986654
No 204
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=0.31 Score=47.32 Aligned_cols=41 Identities=22% Similarity=0.691 Sum_probs=29.3
Q ss_pred eeccccccccccCc---eecccCcHhHHHhHHhcC-------CCCCCCcCC
Q 016262 90 LSCMICQALLFECS---KCTPCSHVYCKACISRFK-------DCPLCGADI 130 (392)
Q Consensus 90 ~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~ 130 (392)
-.|.||.+.+.... -+-.|||.|=..|+..|+ .||.|+-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 47999976644221 122499999999999994 499998433
No 205
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.03 E-value=0.37 Score=48.22 Aligned_cols=44 Identities=25% Similarity=0.711 Sum_probs=32.8
Q ss_pred Cceecccccccccc----------------CceecccCcHhHHHhHHhcC-----CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFE----------------CSKCTPCSHVYCKACISRFK-----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~----------------~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~ 131 (392)
....|+||...+.- .-..+||-|.|-..|+.+|. .||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 35679999865221 12355999999999999994 5999998765
No 206
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=86.87 E-value=0.59 Score=31.74 Aligned_cols=39 Identities=26% Similarity=0.624 Sum_probs=17.3
Q ss_pred cccccccccc-Cceec--ccCcHhHHHhHHhcC-----CCCCCCcCC
Q 016262 92 CMICQALLFE-CSKCT--PCSHVYCKACISRFK-----DCPLCGADI 130 (392)
Q Consensus 92 C~iC~~~~~~-~p~~~--~C~h~fC~~Ci~~~~-----~CP~C~~~~ 130 (392)
||+|.+.+-. +.... +|++..|..|+.+.. .||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 6778777621 22333 578899999987764 399999764
No 207
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=86.10 E-value=2.2 Score=44.26 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
..-++.+....|++++|...|++++++.. . +.++..+|.++...|+.++|++.|++|+
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p-------s--------~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEM-------S--------WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455666667999999999999887651 1 4567889999999999999999999998
No 208
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.95 E-value=5.6 Score=42.85 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----HHHHHhhcCCCCCchhh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 283 GDLKYYGGDLQAARSYYVRSLN----VRRDAVKRHSNVPSQVL---DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~~e~aL~----i~~~~~~~~~~~~~~~~---dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
..-....+|.+.|++||+++=. +.|-+ .+.+....+-+ ---..+.|-|.-.+..|+.+.|+.+|..|.+.+-
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs 943 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFS 943 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhh
Confidence 3444466889999999999643 33222 22221111111 0135577889999999999999999999999887
Q ss_pred Hh------hcCCCchhHHHhhcchh-------HHHHHHhhhccccchhc
Q 016262 356 SL------TLKPEEAGLEQRCWNSS-------TTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 356 ~l------~~~~~~a~l~~~~~~~~-------~~~~l~~~~~~l~~~~~ 391 (392)
.+ ..-...+.+.+-.+... .|...++..+|+.+|-.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 76 11112222332222221 46677777788877754
No 209
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.78 E-value=0.32 Score=52.32 Aligned_cols=43 Identities=28% Similarity=0.861 Sum_probs=34.4
Q ss_pred ceeccccccccc------cCceecccCcHhHHHhHHhcC------CCCCCCcCCc
Q 016262 89 PLSCMICQALLF------ECSKCTPCSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~------~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
.-.|+||-.++. ...++..|.|.|-..|+-.|+ .||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 467999998765 135667799999999999994 4999997654
No 210
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=85.66 E-value=0.88 Score=31.08 Aligned_cols=37 Identities=24% Similarity=0.644 Sum_probs=27.6
Q ss_pred ecccccccc-ccCceecccC-----cHhHHHhHHhcC------CCCCCC
Q 016262 91 SCMICQALL-FECSKCTPCS-----HVYCKACISRFK------DCPLCG 127 (392)
Q Consensus 91 ~C~iC~~~~-~~~p~~~~C~-----h~fC~~Ci~~~~------~CP~C~ 127 (392)
.|.||++.. .+.+.+.||. |.+=..|+.+|. .||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 488999721 2268889985 677889999993 499985
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.62 E-value=25 Score=31.11 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGG---DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 277 ~~l~~lg~l~~~~g---~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+.+.+-|.....+. .-.+++..|++++...++++.-.+..-.....+++.+..+|. ...+..+|.++|++|..-
T Consensus 26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~---l~~d~~~A~~~F~kA~~~ 102 (186)
T PF06552_consen 26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF---LTPDTAEAEEYFEKATEY 102 (186)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHH
Confidence 34555555555543 345677888888888888877777654444444444444443 124456888888888888
Q ss_pred HHHh-hcCCCchhHHHhhcchh
Q 016262 354 LESL-TLKPEEAGLEQRCWNSS 374 (392)
Q Consensus 354 le~l-~~~~~~a~l~~~~~~~~ 374 (392)
++.- ..+|.+......+...+
T Consensus 103 FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 103 FQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHH
Confidence 8887 78888877666665543
No 212
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.21 E-value=0.77 Score=43.04 Aligned_cols=42 Identities=26% Similarity=0.706 Sum_probs=29.7
Q ss_pred eccccccccccCc----eecccCcHhHHHhHHhcC-----CCCCCCcCCcc
Q 016262 91 SCMICQALLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 91 ~C~iC~~~~~~~p----~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
.||+|.-.-.-.| .+-+|+|..|.+|+...+ .||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 4888875322222 233899999999998875 49999876654
No 213
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.10 E-value=1.2 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.+.++|.++..+|++++|+..|++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4567899999999999999999998865
No 214
>PLN02789 farnesyltranstransferase
Probab=84.94 E-value=4.1 Score=39.50 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
.+.+.+...+|.+++|+++++++| ..++.+...-..++.
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I------~~d~~N~sAW~~R~~ 184 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLL------EEDVRNNSAWNQRYF 184 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH------HHCCCchhHHHHHHH
Confidence 335566677777777777777665 334555444433433
No 215
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.87 E-value=3.3 Score=45.52 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
.++..++..|..+|+.++|...|++.|++- +++ +..|+++|..+... ++++|+.++.+|+.++=.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n-------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDN-------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 367788899999999999999999988764 222 67799999999999 999999999999887543
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=13 Score=36.87 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=75.7
Q ss_pred cccccccccccchhHHHhHHHHHHHHHHhCCCCc----hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 235 ~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~----~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
+..|...+..|++..|...|+.+...+.--.... .......-....||...+..++++.+|+....+.|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 3344444577788777777776644443221111 2223334456778888888889999999888887754
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
.+.+ ...|=.-|.++..+|+++.|+..|++++ ...|.+..+..-+..
T Consensus 287 --~~~N-------~KALyRrG~A~l~~~e~~~A~~df~ka~------k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 287 --DPNN-------VKALYRRGQALLALGEYDLARDDFQKAL------KLEPSNKAARAELIK 333 (397)
T ss_pred --CCCc-------hhHHHHHHHHHHhhccHHHHHHHHHHHH------HhCCCcHHHHHHHHH
Confidence 3333 3445566788888999999999998887 455665554444433
No 217
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=0.75 Score=43.81 Aligned_cols=42 Identities=21% Similarity=0.507 Sum_probs=32.0
Q ss_pred CceeccccccccccCceecc-cCcHhHHHhHHhc----CCCCCCCcCC
Q 016262 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRF----KDCPLCGADI 130 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~----~~CP~C~~~~ 130 (392)
+.-.||+|+.--. .|.++. -|.+||..||-.+ ..||.-+.+.
T Consensus 299 ~~~~CpvClk~r~-Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQ-NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccC-CCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 4578999999966 555555 5999999999776 4599866543
No 218
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.00 E-value=10 Score=34.46 Aligned_cols=93 Identities=17% Similarity=0.028 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hcC----CC
Q 016262 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL---TLK----PE 362 (392)
Q Consensus 290 g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l---~~~----~~ 362 (392)
..++.|+..|.-||-......+. . ..+|...-+++=+++.+|+.+....++++|++.+++. ... -.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~-~------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEK-P------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC-H------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 46788888888777654332211 1 1556667788889999999999999999999999987 222 23
Q ss_pred chhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 363 EAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 363 ~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
...++-+++. +.-.++++.+|+.+|..
T Consensus 164 ~~~l~YLige--L~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 164 EATLLYLIGE--LNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHH--HHHHhCCHHHHHHHHHH
Confidence 3456777777 77899999999988753
No 219
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=0.44 Score=35.38 Aligned_cols=42 Identities=24% Similarity=0.605 Sum_probs=29.6
Q ss_pred eeccccccccccCceec-ccCcHhHHHhHHhcC-------CCCCCCcCCc
Q 016262 90 LSCMICQALLFECSKCT-PCSHVYCKACISRFK-------DCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-------~CP~C~~~~~ 131 (392)
-.||-|.-.=-|.|.++ -|.|.|=..||.+|. .||.||+.+.
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 35666665433335544 499999999999994 3999998653
No 220
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.93 E-value=3.9 Score=29.83 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
-|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35556667777788999999999999999999998
No 221
>PRK14574 hmsH outer membrane protein; Provisional
Probab=83.90 E-value=16 Score=40.27 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCCh-HHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTS-ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~-~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
++..++.|+++.|...|..+.+ ..+.+. .+- .+...+. ..|+...|+.+.+.+. ....
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~-------~~P~~~~av~-dll~l~~-------~~G~~~~A~~~~eka~------~p~n 99 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESK-------AGPLQSGQVD-DWLQIAG-------WAGRDQEVIDVYERYQ------SSMN 99 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh-------hCccchhhHH-HHHHHHH-------HcCCcHHHHHHHHHhc------cCCC
Confidence 5678999999999888875532 222221 111 2222211 3466677777776554 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
.. ...+..++.++...|++++|+..|+++++
T Consensus 100 ~~-----~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 100 IS-----SRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 12344557788888888888888887664
No 222
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=83.65 E-value=5.1 Score=43.32 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+.++.+++...|.+.+|+.+|...+ .....+. +...-++|..+..+|.++.|++.|+.++
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~-------~~~~~~~------~~vw~~~a~c~~~l~e~e~A~e~y~kvl----- 476 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPIT-------NREGYQN------AFVWYKLARCYMELGEYEEAIEFYEKVL----- 476 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHh-------cCccccc------hhhhHHHHHHHHHHhhHHHHHHHHHHHH-----
Confidence 445566667777777778887776543 2222221 4445567778888888888888887766
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhcccc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLP 387 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~ 387 (392)
.+.|+.-..+-.+++ ++.-+++..+|++
T Consensus 477 -~~~p~~~D~Ri~Las--l~~~~g~~EkalE 504 (895)
T KOG2076|consen 477 -ILAPDNLDARITLAS--LYQQLGNHEKALE 504 (895)
T ss_pred -hcCCCchhhhhhHHH--HHHhcCCHHHHHH
Confidence 455555555555555 6666666666654
No 223
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=83.49 E-value=4.1 Score=40.69 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
..--+|.+....+++++|+.+|++++++. +. ....-.++.++..+|+.++|..+|++++.+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~-------P~--------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQR-------PD--------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34456888888999999999999988652 22 2234578999999999999999999998754
No 224
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.09 E-value=2.4 Score=47.49 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
.++..+...+..|..+++.+|++++|+.+-.++.-+.+.....+.. +......+++......++...|+.-+..
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~------~t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP------NTKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH------HHHHHhhHHHHHHHhccCccchhhhHHH
Confidence 4566777788889999999999999999888888777766555544 3466667778777777888888888888
Q ss_pred HHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++.+.--. +.||.-+.+-.++.. +++.++++.-+|.|-++|
T Consensus 1041 a~~l~~Ls~ge~hP~~a~~~~nle~--l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLEL--LLLGVEEADTALRYLESA 1083 (1236)
T ss_pred HHHhhccccCCCCCchhhhhhHHHH--HHhhHHHHHHHHHHHHHH
Confidence 88777665 778998888888888 888999999999888765
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=82.84 E-value=4.1 Score=34.10 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--------VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 286 ~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d--------la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
....++.+.++..+++++.+.+.-.=.......+... ....+..++..+...|++++|+..+++++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l------ 89 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL------ 89 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH------
Confidence 3445677888888888888765422111111223322 23334445666667777777777666555
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..+|-+..+-..+.. .+...+++..|+..|++
T Consensus 90 ~~dP~~E~~~~~lm~--~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMR--ALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHSTT-HHHHHHHHH--HHHHTT-HHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHH--HHHHCcCHHHHHHHHHH
Confidence 677888777777777 78888888888888874
No 226
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.24 E-value=3.7 Score=29.14 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 288 ~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
..|++++|+..|+++++. .+.+ ....-.++.++..+|++++|...+++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-------NPDN-------PEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-------TTTS-------HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357777777777766643 4443 3344578899999999998887666544
No 227
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=81.95 E-value=34 Score=34.75 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCH
Q 016262 213 IRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL 292 (392)
Q Consensus 213 ~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l 292 (392)
+.+++...+++..+-...++++. ..++.++|...++.+. .+.+...-++ -+++..+...|+.
T Consensus 329 l~~L~~~~P~N~~~~~~~~~i~~-------~~nk~~~A~e~~~kal----~l~P~~~~l~-------~~~a~all~~g~~ 390 (484)
T COG4783 329 LQPLIAAQPDNPYYLELAGDILL-------EANKAKEAIERLKKAL----ALDPNSPLLQ-------LNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCChHHHHHHHHHHH----hcCCCccHHH-------HHHHHHHHhcCCh
Confidence 34456666666654444444332 4555567766655442 3333333333 4556666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK----------VADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 293 ~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~----------l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
.+|+ .+........++.+..-.-+|.+... .++.+...|++++|+.++..+.+..
T Consensus 391 ~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 391 QEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6544 44445555666665444344444433 3456666788888888777776554
No 228
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=81.33 E-value=1.6 Score=31.14 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 336 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 336 ~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..|++++|+..|++++ ...|.+..+.-.++. ++-..+++.+|..++++
T Consensus 3 ~~~~~~~A~~~~~~~l------~~~p~~~~~~~~la~--~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 3 KQGDYDEAIELLEKAL------QRNPDNPEARLLLAQ--CYLKQGQYDEAEELLER 50 (68)
T ss_dssp HTTHHHHHHHHHHHHH------HHTTTSHHHHHHHHH--HHHHTT-HHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHH------HHCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 3566667766666655 567788877777777 78888888888777664
No 229
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.07 E-value=0.42 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=19.8
Q ss_pred eeccccccccccCceecccCcHhHHHhH--------HhcCCCCCCCcC
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACI--------SRFKDCPLCGAD 129 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci--------~~~~~CP~C~~~ 129 (392)
|.||+-...+..+.+...|.|.-|..=. ...|.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 7899999988866777889998664221 112789999763
No 230
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.88 E-value=21 Score=31.42 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
....+...+..+++.+...|++++|+..|.++.+- ...+...+|+.. ++-.|.-.+|++..+..+.+++
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~--------~~~~~~~id~~l---~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDY--------CTSPGHKIDMCL---NVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------cCCHHHHHHHHH---HHHHHHHHhCCHHHHHHHHHHH
Confidence 46677889999999999999999999999875542 112222334332 3334455668888888888888
Q ss_pred HHHHHHh
Q 016262 351 IKRLESL 357 (392)
Q Consensus 351 l~ile~l 357 (392)
..+++.-
T Consensus 100 ~~~~~~~ 106 (177)
T PF10602_consen 100 ESLIEKG 106 (177)
T ss_pred HHHHhcc
Confidence 7777763
No 231
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.78 E-value=3 Score=24.80 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
++=++|.++..+|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 355788999999999999999998775
No 232
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=79.73 E-value=1.2 Score=38.14 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.7
Q ss_pred ceeccccccccccCceecccC
Q 016262 89 PLSCMICQALLFECSKCTPCS 109 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~ 109 (392)
+..||||++... ..|.|-|.
T Consensus 2 d~~CpICme~PH-NAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPH-NAVLLLCS 21 (162)
T ss_pred CccCceeccCCC-ceEEEEec
Confidence 578999999988 77777543
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.69 E-value=13 Score=34.49 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
++...++-...|..-|..+.|...+++|-++++++
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv 124 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENV 124 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC
Confidence 34444444455555666666666666666555554
No 234
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.59 E-value=1.2 Score=43.57 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=32.6
Q ss_pred ceecccccccccc--CceecccCcHhHHHhHHhc-------CCCCCCCcC
Q 016262 89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRF-------KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~ 129 (392)
.|.|||=.+--.+ +|+.+.|||..|+.-+.+. +.||.|...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4889986664433 7999999999999999886 349999753
No 235
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.98 E-value=0.71 Score=48.51 Aligned_cols=43 Identities=35% Similarity=0.784 Sum_probs=37.1
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC-------CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
.+.|+||..... .|..+.|-|.||..|+...+ .||+|+..+..
T Consensus 21 ~lEc~ic~~~~~-~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVK-EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEee-ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 689999999988 88999999999999987642 49999877665
No 236
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.92 E-value=4.3 Score=40.37 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
...+.+|...-|.++.+++.+++.|.+.-+ .+...+||++......+++|+++|..|+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D---------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPD---------------VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccc---------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344555555555555555555555544322 34456789999999999999999977764
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=78.64 E-value=39 Score=30.14 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=75.6
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+...+..|++.+|...|..-... -+... .-.+.+.+++..++..|++..|+..++......-.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-- 74 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-- 74 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--
Confidence 445567789999999999999633211 11111 01223345555666788888888777765443222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcC-CH---HHHHHHHHHHHHHHHHHhhcCCCCCchh------hHHHHHHH----HHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGG-DL---QAARSYYVRSLNVRRDAVKRHSNVPSQV------LDVAVSLA----KVA 331 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g-~l---~~A~~~~e~aL~i~~~~~~~~~~~~~~~------~dla~sl~----~l~ 331 (392)
+. .+..++-.+|.....+. .. +.-.....+++...+..+.+-|+..-.. .++...|. .+|
T Consensus 75 --~~----~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 75 --SP----KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp ---T----THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --Cc----chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12333344444332221 11 1112233344444445555555433211 11222222 257
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 332 DVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 332 ~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+...|.+..|+..|+..++..-.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC
Confidence 7888899999999999887755443
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.48 E-value=60 Score=30.56 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=70.0
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g-~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~ 321 (392)
..|++.-|..++......... ..++....++...-++|.-....+ +++.|..+++++.++.....+.....+...-
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~---~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNS---LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhc---CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 567778888888877666653 334556789999999999999999 9999999999999997653222222221111
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
=-...|.-++.++-..+..+ +++++..+++.+
T Consensus 82 lr~~iL~~La~~~l~~~~~~----~~~ka~~~l~~l 113 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYE----SVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHH
Confidence 12333455666776666553 333444444444
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.42 E-value=5.5 Score=25.99 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
.+..++.++..+|++++|+..|+++|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999988754
No 240
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=2 Score=42.85 Aligned_cols=59 Identities=22% Similarity=0.550 Sum_probs=38.3
Q ss_pred ceeccccccccccC---ceecccCcHhHHHhHHhcC----------CCCC--CCcCCcc-----cchhhHHHHHHHHHHh
Q 016262 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----------DCPL--CGADIEK-----IEADTTLQDVVDRFIE 148 (392)
Q Consensus 89 ~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----------~CP~--C~~~~~~-----~~~n~~l~~~~~~~~~ 148 (392)
...|.||..-.... -.+..|+|.||..|+.++. .||. |...++. +.++ .+.++++.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 56899999432322 2256799999999998773 2766 6665554 3333 56666666654
No 241
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.16 E-value=3.3 Score=37.44 Aligned_cols=43 Identities=23% Similarity=0.595 Sum_probs=33.7
Q ss_pred eecccccccccc-CceecccCcHhHHHhHHhc------------CCCCCCCcCCcc
Q 016262 90 LSCMICQALLFE-CSKCTPCSHVYCKACISRF------------KDCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~------------~~CP~C~~~~~~ 132 (392)
--|.+|.-.|.. +-+.+-|-|.|=+.|+.+| ..||.|...+-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 458888877663 4677889999999999988 249999886544
No 242
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.96 E-value=7.9 Score=41.24 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH------HHHHHHHHhhcCCCCCchhhHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVR------SLNVRRDAVKRHSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~------aL~i~~~~~~~~~~~~~~~~dla~sl~-~l~~v~~~lg~~~~A~~~~~~al 351 (392)
..+.|+++..+.++++|+.+|.+ ++++.|-+. + +-++.|. .-|+-...+|++..|++.|-++-
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p-------~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---P-------EEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---c-------HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 34557777777777777776654 333333211 1 2234444 34889999999999999998887
Q ss_pred HHHHHh
Q 016262 352 KRLESL 357 (392)
Q Consensus 352 ~ile~l 357 (392)
.+.+-+
T Consensus 734 ~~~kai 739 (1636)
T KOG3616|consen 734 CLIKAI 739 (1636)
T ss_pred hHHHHH
Confidence 777766
No 243
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=77.90 E-value=0.27 Score=36.08 Aligned_cols=40 Identities=35% Similarity=0.677 Sum_probs=22.5
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC---CCCCCCcCCccc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEKI 133 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~~ 133 (392)
++.||.|...|.-.- ++-+|..|-..+. .||.|..++..+
T Consensus 1 e~~CP~C~~~L~~~~-----~~~~C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG-----GHYHCEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp --B-SSS-SBEEEET-----TEEEETTT--EEEEEEE-TTT-SB-EEE
T ss_pred CCcCCCCCCccEEeC-----CEEECccccccceecccCCCcccHHHHH
Confidence 468999999866211 7788888987774 499999866543
No 244
>PHA03096 p28-like protein; Provisional
Probab=77.81 E-value=1.1 Score=42.48 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=24.8
Q ss_pred eeccccccccccCc-------eecccCcHhHHHhHHhcC
Q 016262 90 LSCMICQALLFECS-------KCTPCSHVYCKACISRFK 121 (392)
Q Consensus 90 ~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~ 121 (392)
-.|.||++.....+ ....|.|.||..|+..|.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr 217 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWM 217 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHH
Confidence 56999998766332 244799999999999983
No 245
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.64 E-value=7.9 Score=29.11 Aligned_cols=38 Identities=24% Similarity=0.074 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 361 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~ 361 (392)
|..+...|.-....|++++|+..|.++++.+... ...|
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~ 44 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTK 44 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4455566667788899999999999999999997 4444
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.58 E-value=4.2 Score=22.82 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
....++.++...+++++|+..|.+++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4568899999999999999999988764
No 247
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.90 E-value=4.8 Score=38.91 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~ 319 (392)
+|.-.+.++-+++-++.++....+- ..-+..+-|||.+....||+.-|...|.-+|. .+.+
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~--------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-------~d~~---- 427 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQP--------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-------SDAQ---- 427 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCc--------chhhhhhhccceeEEeccchHHHHHHHHHHhc-------cCcc----
Confidence 5655556677777777665444331 22356778888888888999888888765542 2222
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
-+.+|+||+.+..+-|+...|..+|+-|-..
T Consensus 428 ---h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 ---HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ---hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 2778999999999999999999998877643
No 248
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=76.87 E-value=19 Score=34.83 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccc
Q 016262 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 388 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~ 388 (392)
+|++....|++++|+..++..++ .++.-...++..+.. .|+-|++-...+.+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~e-----Qn~~yl~evl~~L~~--~Y~~lg~~~~~~~f 271 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLE-----QNPEYLSEVLEMLYE--CYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHH-----hChHHHHHHHHHHHH--HHHHhCCHHHHHHH
Confidence 45666666666666655544332 222233345566666 77777776555544
No 249
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=75.88 E-value=11 Score=37.59 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=54.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~ 362 (392)
.......|+++.|..+|+++.+.. +.. .++..+- .+.++...|++++|+..+++.. ...|.
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~-------~~~-----~~~~~l~-~a~l~l~~g~~~~Al~~l~~~~------~~~P~ 185 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELA-------DND-----QLPVEIT-RVRIQLARNENHAARHGVDKLL------EVAPR 185 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-------Ccc-----hHHHHHH-HHHHHHHCCCHHHHHHHHHHHH------hcCCC
Confidence 444467789999999888876332 111 1122111 2677788888888777666543 55677
Q ss_pred chhHHHhhcchhHHHHHHhhhccccch
Q 016262 363 EAGLEQRCWNSSTTNFQKNHLNQLPKF 389 (392)
Q Consensus 363 ~a~l~~~~~~~~~~~~l~~~~~~l~~~ 389 (392)
+...+..+.. ++...++...++.++
T Consensus 186 ~~~al~ll~~--~~~~~gdw~~a~~~l 210 (398)
T PRK10747 186 HPEVLRLAEQ--AYIRTGAWSSLLDIL 210 (398)
T ss_pred CHHHHHHHHH--HHHHHHhHHHHHHHH
Confidence 7776666666 666666666666444
No 250
>PLN03218 maturation of RBCL 1; Provisional
Probab=75.86 E-value=20 Score=40.65 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=10.0
Q ss_pred HhhhchhhHHHHhh
Q 016262 194 FRAQNVESAKSRLS 207 (392)
Q Consensus 194 ~~~g~~~~A~~~l~ 207 (392)
.+.|++++|...+.
T Consensus 553 ~k~G~~deA~~lf~ 566 (1060)
T PLN03218 553 GQSGAVDRAFDVLA 566 (1060)
T ss_pred HHCCCHHHHHHHHH
Confidence 35677888877775
No 251
>PRK15331 chaperone protein SicA; Provisional
Probab=75.56 E-value=41 Score=29.28 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=71.9
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++.+|..+|. .+..+..-.. .-+-.|+.++..++++++|+..|.-+..+..+ ++. +
T Consensus 49 ~~Gk~~eA~~~F~----~L~~~d~~n~-------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~----dp~-p----- 107 (165)
T PRK15331 49 NQGRLDEAETFFR----FLCIYDFYNP-------DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN----DYR-P----- 107 (165)
T ss_pred HCCCHHHHHHHHH----HHHHhCcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC----CCC-c-----
Confidence 7888888888885 2233333332 23678899999999999999999877654321 111 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHh
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKN 381 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~ 381 (392)
.=..|..+..+|+.+.|...|+.++. +|..+.|..+... .+.-|.+
T Consensus 108 ----~f~agqC~l~l~~~~~A~~~f~~a~~-------~~~~~~l~~~A~~--~L~~l~~ 153 (165)
T PRK15331 108 ----VFFTGQCQLLMRKAAKARQCFELVNE-------RTEDESLRAKALV--YLEALKT 153 (165)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHHHHh-------CcchHHHHHHHHH--HHHHHHc
Confidence 23467888999999999999998886 4666666666555 4444443
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.06 E-value=5.6 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
++-++|.++...|++++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788999899999999999987664
No 253
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.00 E-value=19 Score=26.61 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..+.+.|.-....|++++|+..|.++++.+...
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4445555666667799999999999999999997
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=74.93 E-value=33 Score=28.48 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+.........+.......|++++|+..+.+.+.+ ++-+ -.....+-.++..+|+..+|+..|++..
T Consensus 58 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-------dP~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 58 RELYLDALERLAEALLEAGDYEEALRLLQRALAL-------DPYD-------EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344456777888888888888888887776643 3321 2233456688899999999999999999
Q ss_pred HHHHHh-hcCCC
Q 016262 352 KRLESL-TLKPE 362 (392)
Q Consensus 352 ~ile~l-~~~~~ 362 (392)
.++.+. ...|.
T Consensus 124 ~~l~~elg~~Ps 135 (146)
T PF03704_consen 124 RRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHS----
T ss_pred HHHHHHhCcCcC
Confidence 999864 55544
No 255
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.45 E-value=1.1 Score=40.61 Aligned_cols=40 Identities=25% Similarity=0.653 Sum_probs=33.1
Q ss_pred ccccccccccCceecccCc-HhHHHhHHhcCCCCCCCcCCcc
Q 016262 92 CMICQALLFECSKCTPCSH-VYCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 92 C~iC~~~~~~~p~~~~C~h-~fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
|-.|..--. ....+||.| .+|..|=.....||.|+.....
T Consensus 161 Cr~C~~~~~-~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREA-TVLLLPCRHLCLCGICDESLRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCc-eEEeecccceEecccccccCccCCCCcChhhc
Confidence 999999866 788999998 6799998767779999876543
No 256
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=73.79 E-value=6.5 Score=42.30 Aligned_cols=45 Identities=29% Similarity=0.750 Sum_probs=33.6
Q ss_pred cCceeccccccccccCce---ecccCcHhHHHhHHhc-----------CCCCCCCcCCc
Q 016262 87 IGPLSCMICQALLFECSK---CTPCSHVYCKACISRF-----------KDCPLCGADIE 131 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~---~~~C~h~fC~~Ci~~~-----------~~CP~C~~~~~ 131 (392)
...+.|.||.+.+...-- ...|-|.|=..||..| |.||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 346899999998663222 2347799999999999 78999985433
No 257
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=73.69 E-value=0.93 Score=42.63 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=25.2
Q ss_pred eeccccccccccCc--eecccCcHhHHHhHHhc
Q 016262 90 LSCMICQALLFECS--KCTPCSHVYCKACISRF 120 (392)
Q Consensus 90 ~~C~iC~~~~~~~p--~~~~C~h~fC~~Ci~~~ 120 (392)
-.|.||+.-|.+.| ..++|.|-|=..|+.++
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARY 148 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence 56999998877655 67899999988998776
No 258
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.63 E-value=31 Score=34.53 Aligned_cols=28 Identities=21% Similarity=0.123 Sum_probs=17.0
Q ss_pred HHhhhcccccccccccchhHHHhHHHHH
Q 016262 230 LGAVLGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 230 h~~~L~~fC~~C~~~gdhh~a~~~~e~~ 257 (392)
|.+.|.+-|..-..++.|..|+=.|.++
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHH
Confidence 4445556666666777776655555544
No 259
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=73.46 E-value=23 Score=35.40 Aligned_cols=55 Identities=18% Similarity=0.032 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccc
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL 386 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l 386 (392)
+..|...+..+...++++.|+...+++. ...|.+-..-..+.. +|-.++++.+||
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av------~lsP~~f~~W~~La~--~Yi~~~d~e~AL 288 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAV------ELSPSEFETWYQLAE--CYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH------HhCchhHHHHHHHHH--HHHhcCCHHHHH
Confidence 4445556666677777766666665555 344444443334444 555566655554
No 260
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.32 E-value=16 Score=27.50 Aligned_cols=34 Identities=29% Similarity=0.190 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..+...+.-....|++++|+.+|.++++.+...
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 5556666777788899999999999999999884
No 261
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=18 Score=34.40 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH------------------------------HHHhhcCCCCCchhhHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVR------------------------------RDAVKRHSNVPSQVLDVAVSL 327 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~------------------------------~~~~~~~~~~~~~~~dla~sl 327 (392)
-+--||.++..+|++..|...|.+++++. ++++..++.+ ..++
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-------iral 230 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-------IRAL 230 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-------HHHH
Confidence 45678999999999999999999998753 1122222221 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.-||......|++++|+..++.-+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 567888999999999999887744
No 262
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.30 E-value=2.8 Score=39.95 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
|..+++.|=+.-+-|++++|+..|+.|++
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHh
Confidence 55667777777777888888877777663
No 263
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=71.27 E-value=79 Score=29.42 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHh--hcCCCchh
Q 016262 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD----GFQEAIKRLESL--TLKPEEAG 365 (392)
Q Consensus 292 l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~----~~~~al~ile~l--~~~~~~a~ 365 (392)
.+.|...|++|+++.... -.+.++ +.|...||--.+.+..+++.++|+. .|++|+..+..+ ..-.+...
T Consensus 144 ~~~a~~aY~~A~e~a~~~--L~pt~P---irLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstl 218 (244)
T smart00101 144 AENTLVAYKSAQDIALAE--LPPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTL 218 (244)
T ss_pred HHHHHHHHHHHHHHHHcc--CCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHH
Confidence 457788888888875541 122222 4667778888899999999998885 666777777766 22233344
Q ss_pred HHHhhc
Q 016262 366 LEQRCW 371 (392)
Q Consensus 366 l~~~~~ 371 (392)
+++++.
T Consensus 219 ImqLLr 224 (244)
T smart00101 219 IMQLLR 224 (244)
T ss_pred HHHHHH
Confidence 444443
No 264
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=71.16 E-value=1.2e+02 Score=31.59 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=78.4
Q ss_pred hhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHH
Q 016262 195 RAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHT 274 (392)
Q Consensus 195 ~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ 274 (392)
..|++++|+.....+-+| .+...++--.-+++|+ ..|+...|....+.+ ++|...+.
T Consensus 206 ~~g~~~~Al~~Id~aI~h-------tPt~~ely~~KarilK-------h~G~~~~Aa~~~~~A----r~LD~~DR----- 262 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH-------TPTLVELYMTKARILK-------HAGDLKEAAEAMDEA----RELDLADR----- 262 (517)
T ss_pred HhCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHH-------HCCCHHHHHHHHHHH----HhCChhhH-----
Confidence 567788887777655433 2333334344455555 667776766665554 45544333
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA--VSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla--~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
...++.......-|++++|..... + -..........+.++. +-+...|..+..+|++-.|+..|....+
T Consensus 263 --yiNsK~aKy~LRa~~~e~A~~~~~----~---Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 263 --YINSKCAKYLLRAGRIEEAEKTAS----L---FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHH----h---hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 233444555555577777765432 1 1122222233334433 3344568999999999999999999999
Q ss_pred HHHHh
Q 016262 353 RLESL 357 (392)
Q Consensus 353 ile~l 357 (392)
++...
T Consensus 334 ~f~~~ 338 (517)
T PF12569_consen 334 HFDDF 338 (517)
T ss_pred HHHHH
Confidence 99998
No 265
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=12 Score=34.93 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhh
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRC 370 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~ 370 (392)
|-.-|.-...+|++++|...|.+|+.++++| ...|....+.++-
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLd 226 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELD 226 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4455777788999999999999999999999 7778877766543
No 266
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.03 E-value=1.8 Score=39.64 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=27.9
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
.--|.+|+..++ +|++.+=||.||+.||.++
T Consensus 43 FdcCsLtLqPc~-dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 43 FDCCSLTLQPCR-DPVITPDGYLFDREAILEY 73 (303)
T ss_pred cceeeeeccccc-CCccCCCCeeeeHHHHHHH
Confidence 346799999999 9999999999999999875
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.01 E-value=2.8 Score=44.98 Aligned_cols=43 Identities=23% Similarity=0.513 Sum_probs=36.1
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc-CCCCCCCcCC
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADI 130 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~ 130 (392)
+.-.|..|-..|.-+-|...|||+|=..|+++- ..||.|+...
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhccCcccCCccchhh
Confidence 456899999998877888999999999999854 5699998643
No 268
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=70.59 E-value=39 Score=31.30 Aligned_cols=77 Identities=10% Similarity=-0.091 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~ 360 (392)
..+......|++++|+..|++.+.. .+... ....++-++|.++-.+|++++|+..|++.++.. ..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~ 102 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR-------YPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTH 102 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCC
Confidence 4455556679999999998876642 33221 223345689999999999999999999876332 444
Q ss_pred CCchhHHHhhc
Q 016262 361 PEEAGLEQRCW 371 (392)
Q Consensus 361 ~~~a~l~~~~~ 371 (392)
|......-.++
T Consensus 103 ~~~~~a~Y~~g 113 (243)
T PRK10866 103 PNIDYVLYMRG 113 (243)
T ss_pred CchHHHHHHHH
Confidence 45544444443
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=70.49 E-value=20 Score=30.15 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=70.8
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|+...++..|.++....-+ -..++|+-...+.-+|+-++|++.++++|++.-.. +. .
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~-----------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~----tr------t 113 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPE-----------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ----TR------T 113 (175)
T ss_pred hccchHHHHHHHHHHHHhccc-----------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc----ch------H
Confidence 455667777777666544311 13467788888888899999999999999763221 11 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----h-hcCCCchhHHHhh
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES-----L-TLKPEEAGLEQRC 370 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~-----l-~~~~~~a~l~~~~ 370 (392)
.-.+.-.-|.+|+.+|+.++|..-|+.+-++--. | .+.|..+--.+.+
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 1334455689999999999999999998765322 2 5555544433333
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.11 E-value=41 Score=31.68 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=49.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q 016262 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg-~~~~A~~~~~~al~ile~ 356 (392)
...|+++.|..+|.++-.+.. .-.+.....++..+-++|.-....+ +++.|+..+++|.++++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 357899999999998766544 1223333467777888887777777 999999999999999977
No 271
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.09 E-value=28 Score=32.58 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhH---HHHHHhhhccccchhc
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSST---TNFQKNHLNQLPKFRS 391 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~---~~~l~~~~~~l~~~~~ 391 (392)
-.++++|..+|.+++|.--|++.+ -..|-++..-.+++. + ..-+.++.-+.+||.+
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~l------l~~P~n~l~f~rlae--~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELL------LIQPFNPLYFQRLAE--VLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHH------HcCCCcHHHHHHHHH--HHHHHhhHHHHHHHHHHHHH
Confidence 346777888888888777777654 445666655555554 3 2234455555555544
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.59 E-value=47 Score=29.83 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKV-ADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l-~~v~~~lg~~~~A~~~~~~al~il 354 (392)
.--+|+.++..+|.+++|+..+..- . +. ..+..+..+ ||++..+|+-++|+..|++++++.
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~-------~----~~-----~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTI-------K----EE-----SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc-------c----cc-----cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3456677777777777666644321 1 10 223334444 999999999999999999999764
No 273
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=68.60 E-value=3.2 Score=31.22 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=21.4
Q ss_pred ccCcHhHHHhHHhcC----CCCCCCcCCc
Q 016262 107 PCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
-|-|.|=..||.+|. .||++++.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 499999999999994 4999998654
No 274
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=68.50 E-value=2.2 Score=38.93 Aligned_cols=44 Identities=32% Similarity=0.768 Sum_probs=30.4
Q ss_pred Cceeccccccc--cccCce--ecc-cCcHhHHHhHHhcC-----CCC--CCCcCCc
Q 016262 88 GPLSCMICQAL--LFECSK--CTP-CSHVYCKACISRFK-----DCP--LCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~--~~~~p~--~~~-C~h~fC~~Ci~~~~-----~CP--~C~~~~~ 131 (392)
.+-.||||... |..+.+ +-| |-|.+|.+|+.+.+ .|| -|..-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 45789999873 332222 224 99999999999885 399 4866444
No 275
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=68.09 E-value=36 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 361 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~ 361 (392)
|..+...|.-....|++++|+.+|.++++.+... ...|
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~ 46 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVES 46 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444445555666899999999999999999996 4433
No 276
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.91 E-value=40 Score=30.57 Aligned_cols=92 Identities=10% Similarity=0.115 Sum_probs=62.0
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
.-|++..|..-|..+++.-..+.. ..-+..+.+-+.....++.++.|+....+++++--.
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~------e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-------------- 166 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTST------EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-------------- 166 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccH------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--------------
Confidence 778887777777777665444322 223445566677777788889999988888865211
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
-...|..-+.+|.++..++.|++-|.+.+++.
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 02234466788888888899998888766543
No 277
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=10 Score=37.83 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
..++-|+-.+..|.|..|...|..+|.|--+ +. --++..+-|.+.|...+|+..+|+.--+++++|
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-------n~---~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPS-------NK---KTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCcc-------cc---chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 3455566777789999999988888865322 11 023555556667777777777777666666544
No 278
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=66.90 E-value=4.6 Score=38.72 Aligned_cols=44 Identities=20% Similarity=0.532 Sum_probs=30.2
Q ss_pred ceeccccccccccC---ceecccCcHhHHHhHHhcC-----CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+-.||+|.+.+-.. -+--+||...|.-|+.-.. .||.||.....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 34499999864321 2234689988999976552 49999986654
No 279
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.63 E-value=7.5 Score=36.47 Aligned_cols=34 Identities=29% Similarity=0.699 Sum_probs=26.2
Q ss_pred ccCceeccccccccccCceeccc----CcHhHHHhHHhc
Q 016262 86 KIGPLSCMICQALLFECSKCTPC----SHVYCKACISRF 120 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p~~~~C----~h~fC~~Ci~~~ 120 (392)
.+..|.|.+|.+-|.|..++ .| .|.||.-|-.+.
T Consensus 265 ~~apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSRes 302 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRES 302 (352)
T ss_pred CCCceeehhhhhhhccCcee-ecCCCcccceecccCHHH
Confidence 34679999999999955443 44 699999997665
No 280
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=66.22 E-value=41 Score=34.95 Aligned_cols=57 Identities=12% Similarity=-0.048 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..-+|.+....|++++|...|++|+++- | .+.....++. ++...++...|++.|++|
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~------p-s~~a~~~lG~--~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE------M-SWLNYVLLGK--VYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------C-CHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 3445666677899999999999998543 4 3555666677 888899999999999875
No 281
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=66.17 E-value=35 Score=25.26 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP 361 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~ 361 (392)
|..|...|.-....|++++|+.+|.++++.+... ...|
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~ 44 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK 44 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4445555666677899999999999999999997 4433
No 282
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=65.96 E-value=35 Score=36.61 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------HHHHh---hc--CCCCCch---hhH-------HHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNV-------RRDAV---KR--HSNVPSQ---VLD-------VAVSLAKVAD 332 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i-------~~~~~---~~--~~~~~~~---~~d-------la~sl~~l~~ 332 (392)
........|.++...|.+++|+..|..+|.+ +.... .+ .+..+.. +.| .-...-.+|.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 3445566677777888888888888777753 11110 00 0111111 011 1112234789
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHH
Q 016262 333 VDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 333 v~~~lg~~~~A~~~~~~al~ile 355 (392)
|...+|+.++|.+.|+-++++=+
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhcc
Confidence 99999999999999999886543
No 283
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=64.29 E-value=3.7 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=25.1
Q ss_pred ceecccccccccc--CceecccC------cHhHHHhHHhc
Q 016262 89 PLSCMICQALLFE--CSKCTPCS------HVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~--~p~~~~C~------h~fC~~Ci~~~ 120 (392)
...|.||++.+.+ -.+.++|+ |.||..|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 5789999998775 24445554 78999999999
No 284
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=64.00 E-value=35 Score=30.55 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----hcCCCchhHHHhhcchhHHHHHHhhhccccch
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESL----TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 389 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l----~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~ 389 (392)
++..+-.....|++++|...++++.+.+++| ...|+ ...+..+-+-+|+|..|.-+|
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe------l~~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE------LYFAGFVTTALQEYVEATLLY 92 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH------HHHHHhhcchHHHHHHHHHHH
Confidence 3444444455677888888888888888887 33333 222222555677777766554
No 285
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.87 E-value=38 Score=25.39 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..|-+-|......|++++|++.|.++++.+...
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 3344455556677899999999999999999885
No 286
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=63.68 E-value=86 Score=31.26 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=58.6
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHH
Q 016262 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 263 ~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~ 342 (392)
+|-....+++..-..++..+.++-.....|+-|+.....++.+.+.+. =+..++..|.... ..++|.+
T Consensus 68 ~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~-----------MLv~a~~qL~~~~-~~r~Y~e 135 (383)
T PF04100_consen 68 ELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQ-----------MLVTAVEQLKELA-KKRQYKE 135 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-HcCCHHH
Confidence 333334445555666677777777777778888888877777766642 2233344443322 2467777
Q ss_pred HHHHHHHHHHHHHHh---hcCCCchhHHHhhcc
Q 016262 343 AVDGFQEAIKRLESL---TLKPEEAGLEQRCWN 372 (392)
Q Consensus 343 A~~~~~~al~ile~l---~~~~~~a~l~~~~~~ 372 (392)
+...++-..++++.. ..-|.++.|...+..
T Consensus 136 ~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~ 168 (383)
T PF04100_consen 136 IASLLQAVKELLEHFKPYKSIPQIAELSKRIDQ 168 (383)
T ss_pred HHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHH
Confidence 777777777777665 444555555544443
No 287
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=63.48 E-value=2.5 Score=47.41 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=38.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc----CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
+...|.+|+++++..-.+.-|||.+|..|+..| ..||.|......
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 467999999999978899999999999999988 359999865444
No 288
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=63.02 E-value=35 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..|...|.-....|++++|+..|.++++.+...
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~ 39 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA 39 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3444455556677899999999999999999996
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=62.06 E-value=13 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~ 344 (392)
+.++.++|.++...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 677899999999999999986
No 290
>PLN03218 maturation of RBCL 1; Provisional
Probab=61.83 E-value=50 Score=37.57 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
.+.|-..+...|++++|+..|++..+. +-.+ + ..+++.|-..+...|+.++|++.|++.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~-----g~~P-------d-vvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSI-----KLRP-------T-VSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344445555555555555555543211 0111 1 334566666677777777777766654
No 291
>PLN02789 farnesyltranstransferase
Probab=61.31 E-value=38 Score=32.84 Aligned_cols=127 Identities=7% Similarity=-0.063 Sum_probs=73.5
Q ss_pred ccchhHHHhHHHHHHHHHHhCCCCc------hHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 244 MGDADAAVAYFADSVEFLMKLPMDD------LEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~------~e~~~~l~~~l~~lg~l~~~~g-~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
.++++++..++.+............ -++...-..+.+.-+.+...+| ++++++.++++++. ..+.+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~-------~npkn 105 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE-------DNPKN 105 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-------HCCcc
Confidence 3556788888776643322110000 0111122234445555665555 45556555555443 34432
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNE--DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~--~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.....+.+.+...+|.. +++++++++++ ..+|.+...-..++- ++..++.+.++|.+|.++
T Consensus 106 -------yqaW~~R~~~l~~l~~~~~~~el~~~~kal------~~dpkNy~AW~~R~w--~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 106 -------YQIWHHRRWLAEKLGPDAANKELEFTRKIL------SLDAKNYHAWSHRQW--VLRTLGGWEDELEYCHQL 168 (320)
T ss_pred -------hHHhHHHHHHHHHcCchhhHHHHHHHHHHH------HhCcccHHHHHHHHH--HHHHhhhHHHHHHHHHHH
Confidence 23467778788888863 44455444443 777888877777777 888999999999998763
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.26 E-value=20 Score=38.77 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------H----------------HhhcCCCCCchhhHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR------D----------------AVKRHSNVPSQVLDVAVSLAKV 330 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~------~----------------~~~~~~~~~~~~~dla~sl~~l 330 (392)
..++....+-|+-.+..|++++|..+|.+++...+ . +.+...++.....-|-
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLL------ 438 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLL------ 438 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHH------
Confidence 34566778889999999999999999999875321 1 1111111111111122
Q ss_pred HHHHHhcCCHHHHHH------------HHHHHHHHHHHhhcCCCchhHHHhhcch-h----HHHHHHhhhccccchhc
Q 016262 331 ADVDRSIGNEDVAVD------------GFQEAIKRLESLTLKPEEAGLEQRCWNS-S----TTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~------------~~~~al~ile~l~~~~~~a~l~~~~~~~-~----~~~~l~~~~~~l~~~~~ 391 (392)
.+|..+++-++..+ .++.|++|++.-+-....-.|..+...+ . +++.+++|.+||.|++.
T Consensus 439 -ncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 439 -NCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred -HHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc
Confidence 33444444443332 2577777777753322222222333321 1 57899999999999864
No 293
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=61.19 E-value=24 Score=26.70 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+.|....+.|.-....|+.+.|+.+|++++.++++=
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 334444444444455599999999999999999885
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.55 E-value=40 Score=32.99 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH---------HH-h--hcCCCCCchhhHHHHHHHHH-HHHHHhcCCHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRR---------DA-V--KRHSNVPSQVLDVAVSLAKV-ADVDRSIGNEDVAVD 345 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~---------~~-~--~~~~~~~~~~~dla~sl~~l-~~v~~~lg~~~~A~~ 345 (392)
+..-|+-+..+|.|++|++.|.+++++.- .. + -..-+..+.-...|..|+.+ ..+|..-|.-..++.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999876421 00 0 00000011111344445543 344444444444444
Q ss_pred HHHHHHHHHHHh-hcCCCchhHHHhhc
Q 016262 346 GFQEAIKRLESL-TLKPEEAGLEQRCW 371 (392)
Q Consensus 346 ~~~~al~ile~l-~~~~~~a~l~~~~~ 371 (392)
..++|-+=.+.+ .+.|....|...++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 445554444444 66666655554443
No 295
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.40 E-value=1.4e+02 Score=27.53 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=61.5
Q ss_pred ch-hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHH
Q 016262 246 DA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA 324 (392)
Q Consensus 246 dh-h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla 324 (392)
+| ...+.+.+.+.+....-+. .+......-.|+..+...|++++|+.+|+..+...+. ..+..=+.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~-----~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--------egW~~l~~ 218 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQ-----NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--------EGWWSLLT 218 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--------CCcHHHHH
Confidence 45 4567777766555555433 4556667779999999999999999999998666553 11222234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~ 347 (392)
..|..+-.....+|+.+..+..-
T Consensus 219 ~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 219 EVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 55667778888889888776643
No 296
>PLN03077 Protein ECB2; Provisional
Probab=60.22 E-value=1.1e+02 Score=33.94 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 016262 280 NKIGDLKYYGGDLQAARSYYV 300 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e 300 (392)
+.|-+.+...|++++|...|+
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 344455555566666666554
No 297
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.07 E-value=27 Score=32.84 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchh
Q 016262 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG 365 (392)
Q Consensus 286 ~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~ 365 (392)
.+..|+|..|...|..- +...+... -...+.=|||.++-.+|+++.|...|....+ ....+|..+.
T Consensus 151 ~~ksgdy~~A~~~F~~f-------i~~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApd 216 (262)
T COG1729 151 LYKSGDYAEAEQAFQAF-------IKKYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPD 216 (262)
T ss_pred HHHcCCHHHHHHHHHHH-------HHcCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChH
Confidence 33456677776666543 34455543 4577788999999999999999998877664 4456666666
Q ss_pred HHHhhcchhHHHHHHhhhccccchhc
Q 016262 366 LEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 366 l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.+-.++. ....|++...|=..|+|
T Consensus 217 allKlg~--~~~~l~~~d~A~atl~q 240 (262)
T COG1729 217 ALLKLGV--SLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHH--HHHHhcCHHHHHHHHHH
Confidence 6666666 66677776666555554
No 298
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.54 E-value=88 Score=27.83 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+-..|......|++.+|+..|++.+.. .+... -...++-++|.++-..|++..|+..|++-++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--- 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--- 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 34556677777889999999998865543 22221 22445567899999999999999888775522
Q ss_pred hhcCCCchhHHHhhc
Q 016262 357 LTLKPEEAGLEQRCW 371 (392)
Q Consensus 357 l~~~~~~a~l~~~~~ 371 (392)
-..+|.....+-.++
T Consensus 72 yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 72 YPNSPKADYALYMLG 86 (203)
T ss_dssp -TT-TTHHHHHHHHH
T ss_pred CCCCcchhhHHHHHH
Confidence 144444444443333
No 299
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.23 E-value=13 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
....+|.++..+|+.++|...+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456789999999999999987763
No 300
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=58.79 E-value=25 Score=35.24 Aligned_cols=55 Identities=20% Similarity=0.077 Sum_probs=37.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++.++...++..+|+..+++++ ...|.++.++..-.. .+-..+++..||+..++|
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL------~~~p~d~~LL~~Qa~--fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEAL------KENPQDSELLNLQAE--FLLSKKKYELALEIAKKA 260 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHH------HhCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Confidence 5667777888888888888777 555666666655444 555556667777766653
No 301
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=58.69 E-value=5.4 Score=37.95 Aligned_cols=40 Identities=25% Similarity=0.514 Sum_probs=30.8
Q ss_pred ceecccccccccc--CceecccCcHhHHHhHHhc-------CCCCCCCc
Q 016262 89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRF-------KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~ 128 (392)
-|.||+=.+.-.+ +|+.+.|||..-+.-+.+. +.||.|..
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4889976665443 7999999999988877665 34999964
No 302
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=1.1e+02 Score=32.00 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---------HHHH-----------HhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHH
Q 016262 283 GDLKYYGGDLQAARSYYVRSLN---------VRRD-----------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~~e~aL~---------i~~~-----------~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~ 342 (392)
+.+.|.+|+|++|.+-|+..+. ++-. ..+..++.+..-++ .+-|.+-++...|+|.+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sye---l~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYE---LLYNTACILIENGKYNQ 193 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHH---HHHHHHHHHHhcccHHH
Confidence 4555677888888887765532 1100 12223333322222 34577888899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 016262 343 AVDGFQEAIKRLESL 357 (392)
Q Consensus 343 A~~~~~~al~ile~l 357 (392)
|++.++.|+.+.++-
T Consensus 194 A~elL~kA~~~~~e~ 208 (652)
T KOG2376|consen 194 AIELLEKALRICREK 208 (652)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998774
No 303
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.05 E-value=39 Score=33.80 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
....+..+-+.+.+...+|++.+|++....++.|--.. ...|-.-|..+..++.+++|++.|++++
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--------------ikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--------------IKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888999999999999888763331 2233344778888899999999999988
Q ss_pred HHHH
Q 016262 352 KRLE 355 (392)
Q Consensus 352 ~ile 355 (392)
+.-.
T Consensus 349 q~~~ 352 (486)
T KOG0550|consen 349 QLEK 352 (486)
T ss_pred hhcc
Confidence 6543
No 304
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=58.05 E-value=30 Score=33.09 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
++-.|+.-|+++.++.+...-...++. +..+++|. .-.+..+++++++..||+.|
T Consensus 177 elrqA~eKfEESkE~aE~sM~nlle~d------~eqvsqL~------~Li~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 177 ELRQALEKFEESKELAEDSMFNLLEND------VEQVSQLS------ALIQAQLDFHRQSTQILQEL 231 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 456777788888776655321111111 11222221 11235677778888888777
No 305
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.01 E-value=4.3 Score=43.82 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=25.9
Q ss_pred ceeccccccccccCce-ecccCcHhHHHhHHhc
Q 016262 89 PLSCMICQALLFECSK-CTPCSHVYCKACISRF 120 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~ 120 (392)
.-.|.+|...|...|+ +.+|||.|=+.||.+.
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 4679999987665655 6699999999999765
No 306
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=57.07 E-value=7.6 Score=36.65 Aligned_cols=40 Identities=28% Similarity=0.770 Sum_probs=32.2
Q ss_pred ceecccccccccc---CceecccCcHhHHHhHHhc----CCCCCCCc
Q 016262 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~ 128 (392)
..-||||...+++ .+..++|||..=..|++.. ..||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4569999998774 5778899998778888766 46999987
No 307
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=56.89 E-value=8.4 Score=30.49 Aligned_cols=23 Identities=39% Similarity=0.869 Sum_probs=19.7
Q ss_pred ccCcHhHHHhHHhcC----CCCCCCcC
Q 016262 107 PCSHVYCKACISRFK----DCPLCGAD 129 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~----~CP~C~~~ 129 (392)
.|-|.|=.-||.+|. .||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999993 59999763
No 308
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=56.37 E-value=86 Score=28.20 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=44.4
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|+||++++.|++++. -+-..+..+ +-.+...+...++..+|...++ .+.+..++..+ .|
T Consensus 101 elGr~~EA~~hy~qals---G~fA~d~a~-------lLglA~Aqfa~~~~A~a~~tLe-------~l~e~~pa~r~--pd 161 (251)
T COG4700 101 ELGRYHEAVPHYQQALS---GIFAHDAAM-------LLGLAQAQFAIQEFAAAQQTLE-------DLMEYNPAFRS--PD 161 (251)
T ss_pred HhhhhhhhHHHHHHHhc---cccCCCHHH-------HHHHHHHHHhhccHHHHHHHHH-------HHhhcCCccCC--CC
Confidence 67899999999887632 222222322 2223333444445445544443 33333322111 01
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
..--++-++..+|.+..|...|+.++..
T Consensus 162 ---~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 ---GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred ---chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 1112355666677777666666666654
No 309
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=55.17 E-value=32 Score=36.96 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---HHHHHhh--cCCCCCchhhHHHHHHH------HHHHHHHhcCCHHHHHHHHH
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLN---VRRDAVK--RHSNVPSQVLDVAVSLA------KVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~---i~~~~~~--~~~~~~~~~~dla~sl~------~l~~v~~~lg~~~~A~~~~~ 348 (392)
.+.++++...|+--.|+..|-++=. ..+.+.. ...++...+..|+.+|. +-|+++.++.++++|+++|.
T Consensus 606 ~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fk 685 (1636)
T KOG3616|consen 606 EKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFK 685 (1636)
T ss_pred hhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHH
Confidence 3557888888988889998887522 1121111 11222222234555544 45899999999999999987
Q ss_pred HHHHHHHHh-----hcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 349 EAIKRLESL-----TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 349 ~al~ile~l-----~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+.-..-+-+ ....+...|++.-+. ++..++.+..++.-|-
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~--hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGD--HLEQIGQLDAAINHFI 730 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhH--HHHHHHhHHHHHHHHH
Confidence 654443333 222233345555555 6666777666665553
No 310
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.04 E-value=65 Score=24.44 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=41.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016262 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 288 ~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~ 358 (392)
...+.++|+....++|+. .+... +.=..|..+..++...|++++.+.+--+.+++-++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k-------~~~~~----~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK-------ITDRE----DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred ccchHHHHHHHHHHHHhh-------cCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445555666655555544 33322 2233467778899999999999999999999988874
No 311
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=54.92 E-value=3.9 Score=32.35 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=24.5
Q ss_pred CceeccccccccccC-ceecccCcHhHHHhHH
Q 016262 88 GPLSCMICQALLFEC-SKCTPCSHVYCKACIS 118 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~ 118 (392)
..-.|++|...|... -++.||||.|-..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456799999988854 3466999999998875
No 312
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=54.73 E-value=72 Score=35.57 Aligned_cols=95 Identities=15% Similarity=0.039 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..-.+..+....|+|.+|++.++..+..+.. ....+.+++.++-.++..+...|-+.+|+++++.+++++...
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~-------e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSL-------ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3344455555667777888877765554332 122334788888888888889999999999999999999887
Q ss_pred hcCC-CchhHHHhhcchhHHHHH
Q 016262 358 TLKP-EEAGLEQRCWNSSTTNFQ 379 (392)
Q Consensus 358 ~~~~-~~a~l~~~~~~~~~~~~l 379 (392)
-.|. ....+...+.++..+-|.
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHH
Confidence 2222 333344444444333333
No 313
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.39 E-value=1.7e+02 Score=27.85 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 294 ~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
-....|.-++++..+..+..++.. -..++.+|.+..+.|+.+.|--+|+...+.-..|
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQE------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 334456667777777776664432 3456789999999999999999999777665555
No 314
>PLN03077 Protein ECB2; Provisional
Probab=53.80 E-value=87 Score=34.59 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=28.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
.....|.+++|..+|++..+. ..-.+. ...++.+.+++...|++++|.+.+++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~----~gi~P~--------~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEK----YSITPN--------LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHH----hCCCCc--------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344456666666666543311 111111 23456666677777777777666655
No 315
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=52.74 E-value=88 Score=34.92 Aligned_cols=121 Identities=16% Similarity=0.052 Sum_probs=70.9
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..++||.++.-++.+ |...-.+. .....+|+.|...|++..|+.-|.++..++=. +
T Consensus 574 ea~n~h~aV~~fQsA------LR~dPkD~-----n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-------s------ 629 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSA------LRTDPKDY-----NLWLGLGEAYPESGRYSHALKVFTKASLLRPL-------S------ 629 (1238)
T ss_pred CccchhhHHHHHHHH------hcCCchhH-----HHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-------h------
Confidence 445557766655433 32222222 35678899999999999999988876654322 1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
-.+.=+.+.+..-+|.|++|++.++..+.-...- ....+-+...-+... .++.-+=+.++..+++
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ak--d~~~~gf~~kavd~~e 695 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAK--DSAITGFQKKAVDFFE 695 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHhhhhhHHHH
Confidence 1122345667788899999999998877766554 222233333334444 2333333444555544
No 316
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=52.73 E-value=2.4e+02 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=12.5
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHHH
Q 016262 261 LMKLPMDDLEIIHTLSVSLNKIGDLK 286 (392)
Q Consensus 261 ~~~L~~~~~e~~~~l~~~l~~lg~l~ 286 (392)
..+|.....+..-.++..+-.+|++.
T Consensus 215 askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 215 ASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHhccccchHHHHHHHHHHHhhhhHH
Confidence 35555555555444444444444444
No 317
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=51.17 E-value=66 Score=32.75 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+.-.++++...++.++|.+.+.++|.. .+.. ...--++|.++.+.|+.++|+..++..+
T Consensus 342 ~~~~~~~i~~~~nk~~~A~e~~~kal~l-------~P~~-------~~l~~~~a~all~~g~~~eai~~L~~~~------ 401 (484)
T COG4783 342 YLELAGDILLEANKAKEAIERLKKALAL-------DPNS-------PLLQLNLAQALLKGGKPQEAIRILNRYL------ 401 (484)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCc-------cHHHHHHHHHHHhcCChHHHHHHHHHHh------
Confidence 4455677777778888888877776643 3332 2223467888999999986666444432
Q ss_pred hcCCCchhHHHhhcchhHHHHHHh
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKN 381 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~ 381 (392)
...|+++..-+.++- .|..+++
T Consensus 402 ~~~p~dp~~w~~LAq--ay~~~g~ 423 (484)
T COG4783 402 FNDPEDPNGWDLLAQ--AYAELGN 423 (484)
T ss_pred hcCCCCchHHHHHHH--HHHHhCc
Confidence 666677665555555 4444443
No 318
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=50.75 E-value=47 Score=35.04 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=44.5
Q ss_pred HHHHHHhhhccccc-ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 226 LCSQLGAVLGMLGD-CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 226 ~C~~h~~~L~~fC~-~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
.-+.||+.|-+.|- +| .+|+-.+|..+-..... ..+.. . +=+.-+|.++....+|++|+..|..||.
T Consensus 36 k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr--~d~~S---~------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLR--NDLKS---H------VCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred hCCccchhHHhccchhh-cccchHHHHHHHHHHhc--cCccc---c------hhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 34678999888886 34 57776666555433322 12211 1 2356678888888899999999988886
Q ss_pred H
Q 016262 305 V 305 (392)
Q Consensus 305 i 305 (392)
+
T Consensus 104 ~ 104 (700)
T KOG1156|consen 104 I 104 (700)
T ss_pred c
Confidence 4
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.81 E-value=93 Score=28.01 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 016262 329 KVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 329 ~l~~v~~~lg~~~~A~~~~ 347 (392)
+|+.|...+|.+++|+..+
T Consensus 131 RLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 131 RLARVQLQQKKADAALKTL 149 (207)
T ss_pred HHHHHHHHhhhHHHHHHHH
Confidence 5677888888877776644
No 320
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=11 Score=38.43 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=27.9
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~ 120 (392)
....|.||.+-+......+.|||.||..|+..+
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~y 101 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGY 101 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHH
Confidence 468899999986634778899999999999886
No 321
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=48.46 E-value=10 Score=37.28 Aligned_cols=25 Identities=28% Similarity=0.921 Sum_probs=18.9
Q ss_pred cCcHhHHHhHHhcC-----------------CCCCCCcCCcc
Q 016262 108 CSHVYCKACISRFK-----------------DCPLCGADIEK 132 (392)
Q Consensus 108 C~h~fC~~Ci~~~~-----------------~CP~C~~~~~~ 132 (392)
|....|..|+.+|+ .||+||+.|-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 34566999999983 29999997643
No 322
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.53 E-value=15 Score=32.01 Aligned_cols=43 Identities=23% Similarity=0.661 Sum_probs=29.7
Q ss_pred eecccccccccc----Cce--ecccCcHhHHHhHHhcC---------------CCCCCCcCCcc
Q 016262 90 LSCMICQALLFE----CSK--CTPCSHVYCKACISRFK---------------DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~----~p~--~~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~ 132 (392)
--|.||..+--+ +-+ ...||..|-.-|+..|. .||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 347777765432 111 23699999999999882 39999987764
No 323
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=47.16 E-value=1.4e+02 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
.+.-+|+..++..+++++|+..|++-++
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567889999999999999998886554
No 324
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.09 E-value=54 Score=24.44 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..+-..|.-....|++++|+..|.++++.+...
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444555566699999999999999999986
No 325
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=46.09 E-value=6.7 Score=42.38 Aligned_cols=61 Identities=26% Similarity=0.654 Sum_probs=0.0
Q ss_pred CccCceeccccccccccCceecccCcH-----hHHHhHHhcC--CCCCCCcCCcc-cchhhHHHHHHHHH
Q 016262 85 FKIGPLSCMICQALLFECSKCTPCSHV-----YCKACISRFK--DCPLCGADIEK-IEADTTLQDVVDRF 146 (392)
Q Consensus 85 ~~~~~~~C~iC~~~~~~~p~~~~C~h~-----fC~~Ci~~~~--~CP~C~~~~~~-~~~n~~l~~~~~~~ 146 (392)
+......|+-|-.... ..++..||.. +|..|-.... .||.|+..... ...+..+..++...
T Consensus 651 vei~~r~Cp~Cg~~t~-~~~Cp~CG~~T~~~~~Cp~C~~~~~~~~C~~C~~~~~~~~~~~i~l~~~~~~A 719 (900)
T PF03833_consen 651 VEIGRRRCPKCGKETF-YNRCPECGSHTEPVYVCPDCGIEVEEDECPKCGRETTSYSKQKIDLKEEYDRA 719 (900)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EeeecccCcccCCcch-hhcCcccCCccccceeccccccccCccccccccccCcccceeecCHHHHHHHH
Confidence 3345789999999877 7888889854 6999987663 59999887665 33333344444433
No 326
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=45.96 E-value=44 Score=27.91 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
++...|+++.|...|.+++..... ....+..+...+..+...++++.|+..+.+++.+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE-----------LNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-----------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 777888999999988888442110 0112333333444466667777777777766655554
No 327
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=45.51 E-value=1.2e+02 Score=24.64 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHHhhcchhHHHHHHhhh
Q 016262 331 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~-a~l~~~~~~~~~~~~l~~~~ 383 (392)
+......|+++.+.....+++.|+..| .++++. ..+-..+.. +|.|+....
T Consensus 36 a~~a~~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~--lY~y~~~~L 89 (122)
T PF02561_consen 36 AKEAIEQGDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFR--LYDYMIRQL 89 (122)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH--HHHHHHHHH
Confidence 344556788899999999999999999 666653 356666766 777775543
No 328
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=45.34 E-value=1e+02 Score=33.15 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=12.7
Q ss_pred cccccchhHHHhHHHHHH
Q 016262 241 CRAMGDADAAVAYFADSV 258 (392)
Q Consensus 241 C~~~gdhh~a~~~~e~~~ 258 (392)
+...|+..+|+.++++-.
T Consensus 401 y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 436677788888887653
No 329
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=45.01 E-value=21 Score=30.71 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=30.7
Q ss_pred cCceeccccccccccCceecccCcH-----hHHHhHHhcC------CCCCCCcCCcc
Q 016262 87 IGPLSCMICQALLFECSKCTPCSHV-----YCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p~~~~C~h~-----fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
...-.|.||.+--. +...||.-. -=..|+.+|. .|+.|+..+..
T Consensus 6 ~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 35678999998733 345676532 1578999993 49999987654
No 330
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=44.81 E-value=2.5e+02 Score=25.81 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016262 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 268 ~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~ 347 (392)
...++..|+..+-.|+.++...|.+..|+..|+..++ +-+... .....|--+...+..+|..++|....
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~-------~Yp~t~----~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR-------DYPDTQ----ATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH-------HCCCCc----hHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3456778888888899999999999888887776554 333332 34566778889999999998876643
No 331
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=44.03 E-value=1e+02 Score=35.30 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+...+.+..+++.+....++++.|+.+.+.++++.........- ..+.+...++.+...+|.+..|+.......
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l------~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL------ETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch------hhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 44455677889999888899999999999999977666543332 346666677999999999999999999999
Q ss_pred HHHHHh
Q 016262 352 KRLESL 357 (392)
Q Consensus 352 ~ile~l 357 (392)
.|+...
T Consensus 1127 ~iy~~q 1132 (1236)
T KOG1839|consen 1127 GIYKEQ 1132 (1236)
T ss_pred HHHHHh
Confidence 999997
No 332
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=1.6e+02 Score=27.68 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh-hcCCCCCchhh-H--HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV-KRHSNVPSQVL-D--VAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~-~~~~~~~~~~~-d--la~sl~~l~~v~~~lg~~~~A~~~~~ 348 (392)
..+..-|+-.+.+|++.+|.+.|..++...+.+. .+.+..++++- | +...|-|....+-..|++-++++.-.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 3556667888899999999999999999887764 44566666552 2 33345565666655566655555433
No 333
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.00 E-value=1.1e+02 Score=29.11 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~a 302 (392)
..+.+|.+..+.||.+.|..+|+..
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4678999999999999999999843
No 334
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.19 E-value=1.1e+02 Score=28.23 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 292 l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
.+.|...|++|+++....+ .+.++ .-|+..||.-.+.+..+|+.++|+...++|++-.-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L--~~~~p---~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKEL--PPTHP---LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHS--CTTSH---HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhccc--CCCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 3678889999998877642 22222 356667777789999999999999877666655443
No 335
>PRK15331 chaperone protein SicA; Provisional
Probab=42.11 E-value=27 Score=30.40 Aligned_cols=56 Identities=13% Similarity=-0.068 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+-..|.-.-..|++++|...|+=.. ..++.+......++. +++.+++|.+||..|-
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~------~~d~~n~~Y~~GLaa--~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLC------IYDFYNPDYTMGLAA--VCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------HhCcCcHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3344555667798888777665422 455566666667777 9999999999999884
No 336
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.80 E-value=2.8e+02 Score=28.87 Aligned_cols=119 Identities=9% Similarity=0.129 Sum_probs=56.7
Q ss_pred cccccc-cccccchhHHHhHHHHH--------HHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 235 GMLGDC-CRAMGDADAAVAYFADS--------VEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 235 ~~fC~~-C~~~gdhh~a~~~~e~~--------~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
.+||+- ...++++...+..|+.- ..+.+.+.-..+-+++.++...+.+.++.....++..+...+......
T Consensus 84 n~fG~yss~rmk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~ 163 (507)
T PF05600_consen 84 NIFGRYSSQRMKDWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKK 163 (507)
T ss_pred ceeccccchhHHHHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 567753 33467777777776644 233333444455566666666666666665544444333322222221
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 306 RRDAVKRHSNVPSQVLDVAVSLAKV----ADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l----~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
.-..++=...+. ..+|...+..| ..+...+.+...|+++|..-....-
T Consensus 164 ~c~~lGI~G~ni--r~ELl~l~~~LP~~~~~i~~~i~~l~~aie~Y~~f~~~~~ 215 (507)
T PF05600_consen 164 ACKQLGIKGENI--REELLELVKELPSLFDEIVEAISDLQEAIEYYQAFVEFVH 215 (507)
T ss_pred HHHHhCCccchh--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 11222222221 3344444568888888887766433
No 337
>PRK04023 DNA polymerase II large subunit; Validated
Probab=41.79 E-value=22 Score=39.45 Aligned_cols=46 Identities=26% Similarity=0.671 Sum_probs=35.5
Q ss_pred ccCceeccccccccccCceecccCc-----HhHHHhHHhc--CCCCCCCcCCcc
Q 016262 86 KIGPLSCMICQALLFECSKCTPCSH-----VYCKACISRF--KDCPLCGADIEK 132 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~--~~CP~C~~~~~~ 132 (392)
......|+-|-.... ..++..||. .||..|-... ..||.|+.....
T Consensus 623 EVg~RfCpsCG~~t~-~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 623 EIGRRKCPSCGKETF-YRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTP 675 (1121)
T ss_pred cccCccCCCCCCcCC-cccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCc
Confidence 335678999998876 778888984 5899996544 359999988776
No 338
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=41.45 E-value=3.3e+02 Score=26.99 Aligned_cols=16 Identities=6% Similarity=0.055 Sum_probs=8.8
Q ss_pred chhhHHHHhhhcHHHH
Q 016262 198 NVESAKSRLSLCTEDI 213 (392)
Q Consensus 198 ~~~~A~~~l~~c~~~~ 213 (392)
++++|+..|......+
T Consensus 139 ~f~dAr~vF~~~~~~l 154 (371)
T PF12309_consen 139 DFDDAREVFLNGQKWL 154 (371)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 4556666665444444
No 339
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=40.89 E-value=13 Score=21.77 Aligned_cols=7 Identities=43% Similarity=0.785 Sum_probs=3.4
Q ss_pred ccccccc
Q 016262 92 CMICQAL 98 (392)
Q Consensus 92 C~iC~~~ 98 (392)
||-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4555444
No 340
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=40.72 E-value=20 Score=38.34 Aligned_cols=60 Identities=17% Similarity=0.381 Sum_probs=40.4
Q ss_pred ceeccccccccccCceecccCcHhHHHhHH--------hcCCCCCCCcCCcc--cchhhHHHHHHHHHHh
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACIS--------RFKDCPLCGADIEK--IEADTTLQDVVDRFIE 148 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~--------~~~~CP~C~~~~~~--~~~n~~l~~~~~~~~~ 148 (392)
.|.|+|+.--+.-+.+...|.|.-|..=.. ..|.||.|.+.... +..+..+.+++.....
T Consensus 306 SL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred EecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 589999887666566666777755543321 11779999876654 7778777777766543
No 341
>PRK05685 fliS flagellar protein FliS; Validated
Probab=40.25 E-value=1.8e+02 Score=24.13 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHHhhcchhHHHHHHhhh
Q 016262 331 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~-a~l~~~~~~~~~~~~l~~~~ 383 (392)
+......|+++++-....+++.|+.+| .++.+. ..+-..+.+ +|.|+....
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~--LY~y~~~~L 95 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSA--LYDYMIRRL 95 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHH--HHHHHHHHH
Confidence 444445599999999999999999999 665543 356667777 777766544
No 342
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.91 E-value=2.2e+02 Score=23.67 Aligned_cols=76 Identities=14% Similarity=0.040 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.-.|......+|+|++++..-+.+|-..-.-.+-+.+.- ..=|+ .+-+-+.....+|+.++|+..|+.+-+|+.+.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG--klWIa-aVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG--KLWIA-AVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH--HHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc--hhHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 344555666778888888877777765544332222211 01122 22334567788999999999999999999886
No 343
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=39.42 E-value=3.1e+02 Score=25.32 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Q 016262 319 QVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 319 ~~~dla~sl~~l~~v~~~lg-~~~~A~~~~~~al~ile~l 357 (392)
..+|-|.-+.+-|-+.+..| +.......|..|+-+|+.|
T Consensus 160 LiYdrALemsr~AA~~El~g~~~~~ce~~Y~tA~~lLe~L 199 (238)
T PF12063_consen 160 LIYDRALEMSRTAAVDELFGENLEGCEQRYETAIWLLEAL 199 (238)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHH
Confidence 34688888999999999999 9999999999999999999
No 344
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=39.33 E-value=20 Score=34.26 Aligned_cols=9 Identities=33% Similarity=1.383 Sum_probs=6.8
Q ss_pred CCCCCcCCc
Q 016262 123 CPLCGADIE 131 (392)
Q Consensus 123 CP~C~~~~~ 131 (392)
||.|...+.
T Consensus 406 CPFC~~~L~ 414 (429)
T KOG3842|consen 406 CPFCATQLA 414 (429)
T ss_pred Ccchhhhhc
Confidence 999976554
No 345
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.18 E-value=1.6e+02 Score=21.98 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
-....|++++|+.+|.++++....+....++..
T Consensus 15 e~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 15 KAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 345579999999999999999988887777643
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=38.89 E-value=2.8e+02 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHh
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIER 219 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~ 219 (392)
.+..++.+++.++++++...+..+...+...+..
T Consensus 32 ~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~ 65 (352)
T PF02259_consen 32 SFYRALLALRQGDYDEAKKYIEKARQLLLDELSA 65 (352)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3555777889999999999998888777666643
No 347
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.74 E-value=95 Score=30.63 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL-AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 367 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl-~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~ 367 (392)
..++..|+++++-.+..-++ .+ .++ -|+|..+..+|+|++|++.|+-++. .+...+.+-
T Consensus 35 ~rDytGAislLefk~~~~~E-----EE---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~------~~~~~~el~ 94 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDRE-----EE---------DSLQLWIAHCYFHLGDYEEALNVYTFLMN------KDDAPAELG 94 (557)
T ss_pred cccchhHHHHHHHhhccchh-----hh---------HHHHHHHHHHHHhhccHHHHHHHHHHHhc------cCCCCcccc
Confidence 35778888777655432211 11 233 4899999999999999998876542 222223333
Q ss_pred HhhcchhHHHHHHhhhcc
Q 016262 368 QRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~ 385 (392)
-+++- .+-+|+.|.+|
T Consensus 95 vnLAc--c~FyLg~Y~eA 110 (557)
T KOG3785|consen 95 VNLAC--CKFYLGQYIEA 110 (557)
T ss_pred hhHHH--HHHHHHHHHHH
Confidence 34444 55566666554
No 348
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.64 E-value=1.6e+02 Score=21.58 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016262 287 YYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~aL~i~~~~~~~~~ 314 (392)
...|++++|+.+|.++++.........+
T Consensus 19 d~~g~~~eAl~~Y~~a~e~l~~~~~~~~ 46 (77)
T smart00745 19 DEAGDYEEALELYKKAIEYLLEGIKVES 46 (77)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 4469999999999999998887665544
No 349
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=38.43 E-value=30 Score=36.89 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
|=+.+.||++..+..+|..++|...+++|++--
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 346778888888888998888888888887543
No 350
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=37.73 E-value=98 Score=32.22 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccch
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 389 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~ 389 (392)
.+.+++--++..+..+|++++|+.+.+++|++ .|....+--.-+. ++.-.|++.+|....
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~Kar--ilKh~G~~~~Aa~~~ 251 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKAR--ILKHAGDLKEAAEAM 251 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHH--HHHHCCCHHHHHHHH
Confidence 35567777899999999999999999999854 3343333333333 445555555554443
No 351
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=37.71 E-value=1.4e+02 Score=32.92 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH----------HHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYV----------RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV 342 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e----------~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~ 342 (392)
...+.++..++.+...-.+..-|+.+-. +++.+.+. ......+ | -.+|+-+..+++.+|++++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~~-----D-~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLKGT-----D-DLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCCCC-----c-hHHHHHHHHHHHHHhhhhH
Confidence 3455677778888877766554444211 12222222 1222222 2 4567888899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHhhcchh-HHHHHHhhhccccchh
Q 016262 343 AVDGFQEAIKRLESLTLKPEEAGLEQRCWNSS-TTNFQKNHLNQLPKFR 390 (392)
Q Consensus 343 A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~-~~~~l~~~~~~l~~~~ 390 (392)
|+..|+.++ ...|....+...+.... +..+.+.|+-+|.+|.
T Consensus 96 ~~~~Ye~~~------~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 96 AVHLYERAN------QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHH------hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988866 56666444444443321 2445666666677764
No 352
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=1.3e+02 Score=28.31 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
+++..+.++|...|++++|.-.|++.|= ..|-++..+..++..+--+| ...+++-|..+|++++++-.
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll-------~~P~n~l~f~rlae~~Yt~g----g~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLL-------IQPFNPLYFQRLAEVLYTQG----GAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHhCh
Confidence 3556778888888888888888887552 23443322223333332222 23566788889999988766
No 353
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.30 E-value=34 Score=27.76 Aligned_cols=38 Identities=29% Similarity=0.699 Sum_probs=25.8
Q ss_pred eeccccccccccCce-------------ecccCcHhHHHhHH----hcCCCCCCC
Q 016262 90 LSCMICQALLFECSK-------------CTPCSHVYCKACIS----RFKDCPLCG 127 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~-------------~~~C~h~fC~~Ci~----~~~~CP~C~ 127 (392)
..|--|+..|.+.+. ...|.+.||..|=. ....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 348888887663322 66789999998842 225699885
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.27 E-value=61 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 016262 329 KVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 329 ~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.++.+|..+|+.+.|.+.+++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 46778899999999988777765
No 355
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=37.02 E-value=1.5e+02 Score=24.76 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHHhhcchhHHHHHHh
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKN 381 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~-a~l~~~~~~~~~~~~l~~ 381 (392)
|=+..--..+...-..+++.++...+.+++.|+.+| .++.+. -.+-.++.. +|.++-+
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~--LY~y~~~ 89 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDA--LYDYMVR 89 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHH--HHHHHHH
Confidence 333333344555666788889999999999999998 555443 244555555 5555433
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.90 E-value=2.5e+02 Score=26.73 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=41.7
Q ss_pred hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
.+|++-|+..+++ .+...+|-- .+++.+-.+.+.+++|++-..+|.+.|...+.++-+.
T Consensus 44 ~~Al~sF~kVlel----EgEKgeWGF---KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 44 KEALSSFQKVLEL----EGEKGEWGF---KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred HHHHHHHHHHHhc----ccccchhHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666666655443 344444421 3567777889999999999999999999888876554
No 357
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=36.86 E-value=2.8e+02 Score=29.78 Aligned_cols=27 Identities=19% Similarity=0.035 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL 303 (392)
.+++.|-..+...|+.++|+..|++..
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467888888888999999999988764
No 358
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.79 E-value=28 Score=25.70 Aligned_cols=30 Identities=23% Similarity=0.675 Sum_probs=21.1
Q ss_pred CcHhHHHhHHhc--CCCCCCCcCCcc--cchhhH
Q 016262 109 SHVYCKACISRF--KDCPLCGADIEK--IEADTT 138 (392)
Q Consensus 109 ~h~fC~~Ci~~~--~~CP~C~~~~~~--~~~n~~ 138 (392)
.++||..|.+.. ..||.|+..+.. +.+...
T Consensus 28 EcTFCadCae~~l~g~CPnCGGelv~RP~RPaa~ 61 (84)
T COG3813 28 ECTFCADCAENRLHGLCPNCGGELVARPIRPAAK 61 (84)
T ss_pred eeehhHhHHHHhhcCcCCCCCchhhcCcCChHHH
Confidence 368999999854 359999987654 444433
No 359
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.44 E-value=23 Score=24.85 Aligned_cols=22 Identities=27% Similarity=0.927 Sum_probs=17.9
Q ss_pred cHhHHHhHHhc--CCCCCCCcCCc
Q 016262 110 HVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 110 h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
.+||..|.... ..||-|+..+.
T Consensus 29 CTFC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHhcCcCcCCCCccc
Confidence 37999999887 57999987554
No 360
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=36.42 E-value=23 Score=24.40 Aligned_cols=24 Identities=29% Similarity=1.046 Sum_probs=12.0
Q ss_pred eecccCcHhHHHhHH----hcCCCCCCC
Q 016262 104 KCTPCSHVYCKACIS----RFKDCPLCG 127 (392)
Q Consensus 104 ~~~~C~h~fC~~Ci~----~~~~CP~C~ 127 (392)
....|++.||..|=. ....||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 345688899999942 234698873
No 361
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.33 E-value=17 Score=34.35 Aligned_cols=25 Identities=24% Similarity=0.971 Sum_probs=19.2
Q ss_pred cCcHhHHHhHHhcC-----------------CCCCCCcCCcc
Q 016262 108 CSHVYCKACISRFK-----------------DCPLCGADIEK 132 (392)
Q Consensus 108 C~h~fC~~Ci~~~~-----------------~CP~C~~~~~~ 132 (392)
|....|..|+.+|+ .||.||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 45567999998883 39999987654
No 362
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=36.32 E-value=1.8e+02 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
...|++++|...|.++|+.........++
T Consensus 17 d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33489999999999999988877665543
No 363
>PF15556 Zwint: ZW10 interactor
Probab=36.05 E-value=3.2e+02 Score=24.65 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=36.5
Q ss_pred hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR 301 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~ 301 (392)
.+++...+++.+.+..-..-..-+...+..++-.+.+.......+.+|+..+..
T Consensus 59 qkai~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqa 112 (252)
T PF15556_consen 59 QKAIEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQA 112 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776666554444445666777777777777777777777776654
No 364
>PF03491 5HT_transporter: Serotonin (5-HT) neurotransmitter transporter, N-terminus; InterPro: IPR013086 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters []. The serotonin (5-HT) neurotransmitter transporter is known to be expressed in the brain and also in the periphery: on platelet, placental and pulmonary cell membranes. The brain 5-HT transporter is thought to be the principal site of action of therapeutic anti-depressants (which inhibit this transporter), and it may also mediate the behavioural effects of cocaine and amphetamines []. The human form (630 amino acids) is 92% identical to the rat brain 5-HT transporter, and shares the same predicted topology and conserved sites for post-translational modification. This domain is found at the N-terminal region of some 5-HT neurotransmitters.; GO: 0005335 serotonin:sodium symporter activity, 0006836 neurotransmitter transport, 0005887 integral to plasma membrane
Probab=35.41 E-value=29 Score=22.47 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 016262 9 KARPDDASPRKPGENSNKYPA 29 (392)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (392)
|--|+..+.--+|.+||+|.+
T Consensus 7 Kg~p~~gdk~E~gqISNGYSa 27 (42)
T PF03491_consen 7 KGVPTPGDKAESGQISNGYSA 27 (42)
T ss_pred cccCCCCCccccceeccCccc
Confidence 344555666778999999943
No 365
>PHA02862 5L protein; Provisional
Probab=35.31 E-value=27 Score=29.54 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=28.7
Q ss_pred eeccccccccccCceecccCcH-----hHHHhHHhcC------CCCCCCcCCcc
Q 016262 90 LSCMICQALLFECSKCTPCSHV-----YCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~-----fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
-.|.||.+- . +...-||..+ -=..|+.+|. .||+|+..+..
T Consensus 3 diCWIC~~~-~-~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDV-C-DERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCc-C-CCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 369999998 3 3335676532 2478999993 49999987764
No 366
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.28 E-value=1.8e+02 Score=23.52 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHHHHH-HHHHHHHhc----CCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcc
Q 016262 299 YVRSLNVRRDAVKRHSNVPSQVLDVAVSLA-KVADVDRSI----GNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWN 372 (392)
Q Consensus 299 ~e~aL~i~~~~~~~~~~~~~~~~dla~sl~-~l~~v~~~l----g~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~ 372 (392)
+.+||+++++......+.... ..+. ..|.|...+ .+-..-..++.-+++-..+- .+.|..|.++-.++.
T Consensus 12 hiKAL~iied~i~~h~~~~~~-----~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 12 HIKALEIIEDLISRHGEDESS-----WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HHHHHHHHHHHHHHccCCCch-----HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 345667777766555544321 1111 123333332 34444455556666555554 777777777766666
Q ss_pred hhHHHHHHhhhccccc
Q 016262 373 SSTTNFQKNHLNQLPK 388 (392)
Q Consensus 373 ~~~~~~l~~~~~~l~~ 388 (392)
.+.....|.+++..
T Consensus 87 --~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 87 --QLGSVKYYKKAVKK 100 (111)
T ss_pred --HhhhHHHHHHHHHH
Confidence 55556666655544
No 367
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=35.10 E-value=2.9e+02 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL 303 (392)
...+..+.++||+....+..+++|..||.+.-
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566788999999999999999999998754
No 368
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=34.84 E-value=69 Score=22.13 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE 367 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~ 367 (392)
=.++..+.++|++++|..+.+..+ ..+|++....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL------~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALL------EIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH------HHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH------hhCCCcHHHH
Confidence 346677889999999999888766 4455554433
No 369
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=34.53 E-value=2.5e+02 Score=22.70 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHH
Q 016262 297 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA 343 (392)
Q Consensus 297 ~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A 343 (392)
+.|.++|+......+.++++...-.+-+..+.++-.+++.--...+|
T Consensus 12 ~dy~~Al~eV~~lfd~dpE~~~~e~dr~~Ilatl~eAyE~kh~~i~a 58 (120)
T COG5499 12 ADYRWALAEVDKLFDNDPENPLLELDRADILATLIEAYEFKHYPIAA 58 (120)
T ss_pred HHHHHHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhhhhhhchhhc
Confidence 46778888888888888888877777777788877777765544333
No 370
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.99 E-value=1.1e+02 Score=29.98 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~ 345 (392)
.+.++.-.++-|+-++.-.+|..|+..|.+.|+..-. +... .++.++|-+...-.+|||..|++
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~--D~dl--------navLY~NRAAa~~~l~NyRs~l~ 140 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA--DPDL--------NAVLYTNRAAAQLYLGNYRSALN 140 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC--CccH--------HHHHHhhHHHHHHHHHHHHHHHH
Confidence 3447777888899999999999999999988865321 1111 14445555555555555555544
No 371
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=33.77 E-value=1.9e+02 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=24.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
-....|++++|+.+|.++++.........+.
T Consensus 15 ~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 15 EEDNAGNYEEALRLYQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3455699999999999999988877666554
No 372
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=33.18 E-value=2.7e+02 Score=22.81 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=55.4
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..+++..+...++.... +... ...........+......++++.++..+.+++......
T Consensus 142 ~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------- 200 (291)
T COG0457 142 ELGDYEEALELYEKALE----LDPE----LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD------------- 200 (291)
T ss_pred HcCCHHHHHHHHHHHHh----cCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------------
Confidence 45666666666665521 1110 01112233333444566678888888888777665442
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
....+..++..+...+.+..|+..+..++.....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 2344566777888888888888888887766553
No 373
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=33.04 E-value=1.7e+02 Score=26.60 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 016262 342 VAVDGFQEAIKRLESL 357 (392)
Q Consensus 342 ~A~~~~~~al~ile~l 357 (392)
.-++||+++.++++.|
T Consensus 189 AQl~Yh~q~~e~L~~l 204 (215)
T cd07593 189 AELDYHQQSLDVLREV 204 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4488999999999988
No 374
>PF12854 PPR_1: PPR repeat
Probab=32.80 E-value=99 Score=18.82 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
..+++-|-..+.+.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45677788899999999999998875
No 375
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.67 E-value=20 Score=25.99 Aligned_cols=10 Identities=30% Similarity=1.281 Sum_probs=6.5
Q ss_pred HhHHHhHHhc
Q 016262 111 VYCKACISRF 120 (392)
Q Consensus 111 ~fC~~Ci~~~ 120 (392)
-||+.|+..|
T Consensus 11 gFCRNCLskW 20 (68)
T PF06844_consen 11 GFCRNCLSKW 20 (68)
T ss_dssp S--HHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999887
No 376
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.55 E-value=2.1e+02 Score=21.22 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 286 ~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
....|++++|+..|.++|+.........++
T Consensus 16 ~D~~g~y~eA~~lY~~ale~~~~~~k~e~~ 45 (75)
T cd02684 16 KDQRGDAAAALSLYCSALQYFVPALHYETD 45 (75)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 445689999999999999988776655544
No 377
>PRK10941 hypothetical protein; Provisional
Probab=32.47 E-value=3.5e+02 Score=25.55 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
...+...++++..++...++++.|+...+..|.+ .++.+....| -|.++.++|.+..|+.-++.-+
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-------~P~dp~e~RD-------RGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQF-------DPEDPYEIRD-------RGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-------CCCCHHHHHH-------HHHHHHHcCCcHHHHHHHHHHH
Confidence 6678888999999998888888888777665543 4554433333 4788999999999998776644
No 378
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=31.72 E-value=1.4e+02 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016262 340 EDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 340 ~~~A~~~~~~al~ile~l 357 (392)
.+.|.+.|+++.++...+
T Consensus 151 lr~Ae~kfees~E~a~~~ 168 (215)
T cd07593 151 LRRAKAKYEESSEDVEAR 168 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777776666654
No 379
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.70 E-value=39 Score=20.72 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=7.8
Q ss_pred hcCCCCCCCcC
Q 016262 119 RFKDCPLCGAD 129 (392)
Q Consensus 119 ~~~~CP~C~~~ 129 (392)
.-|.||.|+..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44678999764
No 380
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.63 E-value=63 Score=34.90 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=28.0
Q ss_pred ceecccccccccc---Cceecc---cCcHhHHHhHHhcC----------CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFE---CSKCTP---CSHVYCKACISRFK----------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~---~p~~~~---C~h~fC~~Ci~~~~----------~CP~C~~~~~~ 132 (392)
..+|.+|.--+.+ ---+.+ |+|.||..||..|. .|+.|..-|..
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3455555554442 122334 99999999999883 27888765544
No 381
>PF06600 DUF1140: Protein of unknown function (DUF1140); InterPro: IPR009520 This entry is represented by Bacteriophage bIL286, Orf36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short, hypothetical phage and bacterial proteins. The function of this family is unknown.
Probab=31.49 E-value=44 Score=26.25 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=31.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 333 VDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 333 v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
-|...|+.+.-+ .+....+..| +.+ ....+..+++. +-+.|+.+|.+.|..|+||
T Consensus 51 yWKs~~n~efyi---~E~~~~l~~l~e~D-r~~~Ws~kLHQ-dr~kFV~kY~~vle~yr~~ 106 (107)
T PF06600_consen 51 YWKSVGNAEFYI---KEIYQKLSQLAEID-RLFHWSSKLHQ-DRYKFVSKYPKVLEKYRQA 106 (107)
T ss_pred HHHHhhcHHHHH---HHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHHHHHHHHHHcc
Confidence 455666655333 3333333333 222 22223334443 4788999999999999987
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=31.26 E-value=3.7e+02 Score=28.44 Aligned_cols=100 Identities=8% Similarity=-0.037 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHh-hcCCCCCchhhHHHHHHHH-----------HHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAK-----------VADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~-~~~~~~~~~~~dla~sl~~-----------l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
.+..++|..++++++.+.+... .........+.++.....| ++.....+|++..|....++..+....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 4555699999999999988877 3333333322233333333 234455568888888888887777766
Q ss_pred hhc---CCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 357 LTL---KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 357 l~~---~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
... ..-...+....+. .++..++...|+.+|+
T Consensus 394 ~~~~~~~~~~~~~~yL~gl--~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 394 SPSKLYESLYPLLHYLLGL--YYQSTGDLEAALYQYQ 428 (608)
T ss_pred CccchhhhhhHHHHHHHHH--HHHHcCCHHHHHHHHh
Confidence 522 2233445555666 6777888888998887
No 383
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=31.18 E-value=5.2e+02 Score=25.42 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLE 367 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~ 367 (392)
.+|.++|+.+.++..+..+.. ..+ ..+......++.++-.+|+.+++...+.+..+++.++ .-.+..+.--
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~--~e~------~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEY--KEP------DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhh--ccc------hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 357888998888776655442 122 1345555566777779999999999999999999998 3333233322
Q ss_pred HhhcchhHHHHHHhh
Q 016262 368 QRCWNSSTTNFQKNH 382 (392)
Q Consensus 368 ~~~~~~~~~~~l~~~ 382 (392)
..+.+ ..|...+++
T Consensus 160 Y~lss-qYyk~~~d~ 173 (380)
T KOG2908|consen 160 YSLSS-QYYKKIGDF 173 (380)
T ss_pred HHHHH-HHHHHHHhH
Confidence 22222 345555554
No 384
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.89 E-value=5.4e+02 Score=27.83 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHh---hcCCCchhHHHhh
Q 016262 334 DRSIGNEDVAVDGFQEAIKRLESL---TLKPEEAGLEQRC 370 (392)
Q Consensus 334 ~~~lg~~~~A~~~~~~al~ile~l---~~~~~~a~l~~~~ 370 (392)
+...+.|.+|+..++-.+++++.. ..-++++.|...+
T Consensus 142 l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si 181 (793)
T KOG2180|consen 142 LLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESI 181 (793)
T ss_pred HHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455688889999998888888876 4445555555433
No 385
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=30.81 E-value=8.9e+02 Score=27.98 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH--hhcCCCCCchhh----HHHHHHHHHH-------HHHHhcCCHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDA--VKRHSNVPSQVL----DVAVSLAKVA-------DVDRSIGNEDVAVD 345 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~--~~~~~~~~~~~~----dla~sl~~l~-------~v~~~lg~~~~A~~ 345 (392)
.++.+..|...|++++|+..|..+..-++.+ +........++. +++..|...+ .+..-+++.++|+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ 1034 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVA 1034 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHH
Confidence 3455677778899999999998887765532 222222222222 3444444321 34555688888888
Q ss_pred HHHHHHHHHHHh
Q 016262 346 GFQEAIKRLESL 357 (392)
Q Consensus 346 ~~~~al~ile~l 357 (392)
.|=+|-+..+-+
T Consensus 1035 ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 1035 LLCKAKEWEEAL 1046 (1265)
T ss_pred HHhhHhHHHHHH
Confidence 777776666665
No 386
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=30.76 E-value=4e+02 Score=26.57 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHHhhcCCCCCc--hhhHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGD---------LQAARSYYVRSLNVRRDAVKRHSNVPS--QVLDVAVSLAKV 330 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~---------l~~A~~~~e~aL~i~~~~~~~~~~~~~--~~~dla~sl~~l 330 (392)
.+.-...-.+-|||.++..+|. +..|..+|++|--+..-+.+.....++ ...+....|.+|
T Consensus 100 sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~Ps~Dms~~~L~~L~~L 171 (384)
T cd09248 100 ALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLLRENFSNAPSPDMSTASLSMLEQL 171 (384)
T ss_pred cHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCHHHHHHHHHH
Confidence 3455556677888888877653 788999999987766555443322222 122455555554
No 387
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.67 E-value=46 Score=35.57 Aligned_cols=45 Identities=29% Similarity=0.787 Sum_probs=32.6
Q ss_pred CceeccccccccccC---------ceecccCcHh--------------------HHHhHHhcC------------CCCCC
Q 016262 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C 126 (392)
+.-.|+-|+..++|+ ..++.||..| |..|..++. .||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 446788888877742 2366788887 999988873 29999
Q ss_pred CcCCcc
Q 016262 127 GADIEK 132 (392)
Q Consensus 127 ~~~~~~ 132 (392)
+-.+..
T Consensus 180 GP~~~l 185 (750)
T COG0068 180 GPHLFL 185 (750)
T ss_pred CCCeEE
Confidence 876554
No 388
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=30.50 E-value=1e+02 Score=32.60 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=19.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcc
Q 016262 334 DRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWN 372 (392)
Q Consensus 334 ~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~ 372 (392)
|..+|-+..+-.-|.+|++-+++- ...|++-.++..+..
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 444444444444455555555553 566666555544433
No 389
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=30.18 E-value=4.1e+02 Score=26.22 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHhhcCCCCC---chhhHHHHHHHHHHHHHHhc-
Q 016262 271 IIHTLSVSLNKIGDLKYYGG---------DLQAARSYYVRSLNVRRDAVKRHSNVP---SQVLDVAVSLAKVADVDRSI- 337 (392)
Q Consensus 271 ~~~~l~~~l~~lg~l~~~~g---------~l~~A~~~~e~aL~i~~~~~~~~~~~~---~~~~dla~sl~~l~~v~~~l- 337 (392)
+.-+..-.+-|||-++.++| .+..|..+|+++--+..-+.+...... ....++...|..+.....+.
T Consensus 109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc 188 (361)
T cd09239 109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQEC 188 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 44455556677777776553 277888899988766655444322221 22224555566543221111
Q ss_pred --------C-------CH-HHHHHHHHHHHHHHHHh
Q 016262 338 --------G-------NE-DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 338 --------g-------~~-~~A~~~~~~al~ile~l 357 (392)
+ ++ .++..+|+++.+.+.+.
T Consensus 189 ~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~ 224 (361)
T cd09239 189 LLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENW 224 (361)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11 25677899999888764
No 390
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=29.82 E-value=77 Score=30.22 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
...++.++.+...+|++++|...+++++ ..+|.++.++-++..
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al------~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEAL------EKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHC------CC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH------HhccCCHHHHHHHHH
Confidence 3457788999999999999999888765 455666666555544
No 391
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.65 E-value=2.4e+02 Score=29.14 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=55.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~ 362 (392)
|-+.+.++++.+|+.+..+.|++... . ....-.+.+|--++.|.-.+|+..++.+...-++++-.++.+++-
T Consensus 452 glfaf~qn~lnEaK~~l~e~Lkmana-e-------d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 452 GLFAFKQNDLNEAKRFLRETLKMANA-E-------DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHhccHHHHHHHHHHHHhhcch-h-------hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 55666779999999999998887521 1 011134777888899999999999999998888888877755555
Q ss_pred chh
Q 016262 363 EAG 365 (392)
Q Consensus 363 ~a~ 365 (392)
+-+
T Consensus 524 qLw 526 (629)
T KOG2300|consen 524 QLW 526 (629)
T ss_pred HHH
Confidence 433
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.56 E-value=1.6e+02 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 329 ~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+|..+..+|++++|+.+|+.+...++.-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e 211 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRRE 211 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 67999999999999999999998777765
No 393
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=29.55 E-value=64 Score=37.56 Aligned_cols=45 Identities=29% Similarity=0.653 Sum_probs=31.8
Q ss_pred Cceecccccccc--ccCceecccCcHhHHHhHHh-----cC---------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALL--FECSKCTPCSHVYCKACISR-----FK---------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~--~~~p~~~~C~h~fC~~Ci~~-----~~---------~CP~C~~~~~~ 132 (392)
.+-.|.||.-.- .-+-..+.|+|.|-..|..+ |. .||.|..++.-
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 356899997531 21457889999997777643 31 49999998775
No 394
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=29.37 E-value=23 Score=27.54 Aligned_cols=36 Identities=28% Similarity=0.707 Sum_probs=28.9
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhcCCCCCCCcCCc
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIE 131 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~CP~C~~~~~ 131 (392)
-.|-||..-+. . =||.||..|--.-..|..|+..+.
T Consensus 45 ~~C~~CK~~v~-q-----~g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVH-Q-----PGAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred ccccccccccc-c-----CCCccChhhhcccCcccccCCeec
Confidence 57999988766 2 277899999877788999998763
No 395
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=29.11 E-value=3.2e+02 Score=22.35 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHHhhcchhHHHHHHhhh
Q 016262 331 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~-a~l~~~~~~~~~~~~l~~~~ 383 (392)
+...-..|+++++-....+++.|+..| .++.+. -.+-.++.. +|.|+....
T Consensus 38 a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~--LY~y~~~~L 91 (124)
T TIGR00208 38 AAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIELSASLGA--LYDYMYRRL 91 (124)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHH--HHHHHHHHH
Confidence 334445599999999999999999998 555443 356667777 777766544
No 396
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=29.00 E-value=1.1e+02 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE 363 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~ 363 (392)
..|..|-..|.++...|+.+.|--+|-+.+.+++.+..||+-
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~~Hpdy 77 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIPKHPDY 77 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHCCSCCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcCccc
Confidence 456777778999999999999999999999999666777664
No 397
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=28.90 E-value=1.5e+02 Score=28.41 Aligned_cols=9 Identities=11% Similarity=0.652 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 016262 292 LQAARSYYV 300 (392)
Q Consensus 292 l~~A~~~~e 300 (392)
+++++.||+
T Consensus 65 I~ksrpf~e 73 (426)
T KOG2008|consen 65 IEKSRPFWE 73 (426)
T ss_pred HhhcccHHH
Confidence 344444554
No 398
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.48 E-value=2.5e+02 Score=26.80 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 326 SLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 326 sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
..--||.+|..+|++..|+..|.+|+.+
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 3444688888888888888888777643
No 399
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.38 E-value=3.3e+02 Score=26.88 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHH-----HHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 291 DLQAARSYYVRSLNVR-----RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 291 ~l~~A~~~~e~aL~i~-----~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.|.++...|..++++. ...+...+-| +.+|-.+++|...+|+++.|.+..++|+=.++..
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyH-------idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~ 73 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYH-------IDTLLQLSEVYRQQGDHAQANDLLERALFAFERA 73 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3455666666666532 2334445544 4577789999999999999999999999999965
No 400
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=28.35 E-value=3.5e+02 Score=29.27 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+|-+.-++++++.|+..|.... .+.|+.+..=+++..
T Consensus 525 ~G~~ALqlek~q~av~aF~rcv------tL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 525 LGCAALQLEKEQAAVKAFHRCV------TLEPDNAEAWNNLST 561 (777)
T ss_pred ccHHHHHHhhhHHHHHHHHHHh------hcCCCchhhhhhhhH
Confidence 3455556677777777776544 777887776666665
No 401
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=28.34 E-value=2.4e+02 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 284 DLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 284 ~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.-....|++++|+.+|.++++.........+.
T Consensus 14 v~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 14 VKEDEDGNYEEALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33445699999999999999988776655543
No 402
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.25 E-value=98 Score=27.03 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=41.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh-hHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV-LDVAVSLAKV-ADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 288 ~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~-~dla~sl~~l-~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..|+|+.++..|.++..+........+ .-..+ .++-..++.+ ..+|..+.+.....+.+.+.+..|-.|
T Consensus 98 ~~~dy~~~i~dY~kak~l~~~~~~~~~-vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L 168 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLFEKYKQQVP-VFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLEL 168 (182)
T ss_pred HcCcHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 358999999999988887766432000 00001 1333334444 367777777776666677777666666
No 403
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.18 E-value=1.8e+02 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=22.7
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
.+..++..+.+. ...-.++..+...|++++|++.+-+.
T Consensus 11 l~~~~a~~P~D~-------~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 11 LEAALAANPDDL-------DARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHSTT-H-------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455566533 33445667788889999988866443
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.07 E-value=88 Score=32.19 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=69.6
Q ss_pred ccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC-CCCCchh
Q 016262 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH-SNVPSQV 320 (392)
Q Consensus 242 ~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~-~~~~~~~ 320 (392)
+.+|+|..|+.+.-.+......=...-.++. --...|++|-|.+.+|-|..+..+|.++|+-.-..+... .......
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~--~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLS--SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhh--hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4667776666655433333222111112221 223569999999999999999999999996222222111 1111111
Q ss_pred h---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 321 L---DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 321 ~---dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
. ---..+-|.|..+--+|+-..|.+-|.++...+..
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 1 01223557899999999999999999999887764
No 405
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.87 E-value=38 Score=27.12 Aligned_cols=20 Identities=25% Similarity=0.815 Sum_probs=15.5
Q ss_pred CcHhHHHhHHhc-------------CCCCCCCc
Q 016262 109 SHVYCKACISRF-------------KDCPLCGA 128 (392)
Q Consensus 109 ~h~fC~~Ci~~~-------------~~CP~C~~ 128 (392)
.-.||..||... |.||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999997543 56999976
No 406
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=27.78 E-value=2.3e+02 Score=27.93 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
+.-+--.-|.+...+|+|++|...|.+.|+
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 333444557888889999999999987765
No 407
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=27.67 E-value=2.4e+02 Score=24.58 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
++...+..+|+.+...|+++.|+..|.++.+-
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 45777888999999999999999999886654
No 408
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=27.48 E-value=29 Score=31.57 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=13.8
Q ss_pred CceeccccccccccCceec
Q 016262 88 GPLSCMICQALLFECSKCT 106 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~ 106 (392)
--|.|++|+.+|. +|+..
T Consensus 259 ~GfvCsVCLsvfc-~p~~~ 276 (296)
T COG5242 259 LGFVCSVCLSVFC-RPVPV 276 (296)
T ss_pred Eeeehhhhheeec-CCcCc
Confidence 4588999999987 66554
No 409
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=27.16 E-value=2e+02 Score=30.06 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=16.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCC
Q 016262 315 NVPSQVLDVAVSLAKVADVDRSIGN 339 (392)
Q Consensus 315 ~~~~~~~dla~sl~~l~~v~~~lg~ 339 (392)
.+....+|.+..|+++||+-+.+..
T Consensus 400 ~r~~~iid~a~~lE~IgDiie~l~~ 424 (533)
T COG1283 400 RRWAEIIDAAINLEHIGDIIERLLE 424 (533)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333445888888888887666543
No 410
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.00 E-value=1.6e+02 Score=33.49 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 288 ~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..|++..|....+.+...+..+.+-... .-.....|......+|.-+.|+......+...+++
T Consensus 1537 T~~di~ra~~L~s~A~~a~~~A~~v~~~-------ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~ 1599 (1758)
T KOG0994|consen 1537 TKGDIARAENLQSEAERARSRAEDVKGQ-------AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQL 1599 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3466666666665555544443211111 11122345556666666666666554444444443
No 411
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=26.87 E-value=2.9e+02 Score=21.01 Aligned_cols=55 Identities=7% Similarity=0.040 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 016262 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 291 ~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~ 345 (392)
.++.-.......|+...+..+..+.++..+.++...+++.......+.+.-+++.
T Consensus 15 ~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQSn~iKa~K 69 (80)
T PRK15326 15 KFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNTVKVFK 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666666666778888886666666666666555555555555544
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.27 E-value=5.1e+02 Score=23.75 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhH--HHHHHhhhccccchhc
Q 016262 341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSST--TNFQKNHLNQLPKFRS 391 (392)
Q Consensus 341 ~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~--~~~l~~~~~~l~~~~~ 391 (392)
+.|...|++|+++.+.- +.|-++.-+....+-+| |..+++..+|+.+-++
T Consensus 143 ~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 68999999999999884 44455554555554333 3445666666655443
No 413
>PLN03223 Polycystin cation channel protein; Provisional
Probab=26.26 E-value=3.9e+02 Score=31.32 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh------h-HHHHHHHHH-HHHHHhcCCHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV------L-DVAVSLAKV-ADVDRSIGNEDVA 343 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~------~-dla~sl~~l-~~v~~~lg~~~~A 343 (392)
...|...+..+|.+...++-++.++.......+..-...+...+..... + |+...-..+ +.+.+-+|+.+.|
T Consensus 777 ~~~l~~~~~~v~~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~~~~~i~~g~~d~~~~~~~~~~~~~~il~kq~~a 856 (1634)
T PLN03223 777 AATLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNSLETLINAGFTDIKAGQAALEAKLDEILGKQQQA 856 (1634)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHhchhHHHhHHHHHHhHHHHHHHHHHHH
Confidence 4556777788888888888888888777665554333222222211100 1 222222223 3567778999999
Q ss_pred HHHHHHHHHHHHHh
Q 016262 344 VDGFQEAIKRLESL 357 (392)
Q Consensus 344 ~~~~~~al~ile~l 357 (392)
+..-++++.+++..
T Consensus 857 l~~~~~~~~~~~~~ 870 (1634)
T PLN03223 857 LAAAQESLAIQQRT 870 (1634)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 414
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=26.22 E-value=1.5e+02 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
-.+|+.-.+.++.=.++-.|++|+.+.+++
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~ 34 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEI 34 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 346777788889999999999999999999
No 415
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.10 E-value=58 Score=30.25 Aligned_cols=45 Identities=18% Similarity=0.438 Sum_probs=33.0
Q ss_pred Cceecccccccccc---CceecccCcHhHHHhHHhcC--CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~~ 132 (392)
-.|.|||=.-.+.. =-+..+|||.|-..-+.++. .|++|++.+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 36888876544331 13566899999998888775 59999998875
No 416
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=26.05 E-value=5.2e+02 Score=24.23 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhcc
Q 016262 339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 339 ~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~ 385 (392)
+.+.+++..+++++.+++. ..|........+.. .++.|++..++
T Consensus 240 ~l~~~l~~l~~~l~~~~~~-~~~~~~~~~~~l~~--l~~~l~~i~~q 283 (284)
T PF12805_consen 240 RLKRALEALEESLEFLRQQ-DQPENREALLALRN--LLDNLRNIDRQ 283 (284)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCccCHHHHHHHHH--HHHHHHHHHhh
Confidence 3456666666666665555 34444444444444 66666665544
No 417
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.53 E-value=2.5e+02 Score=19.98 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016262 283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 283 g~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~ 314 (392)
+.-....|++++|+.+|.++++....+....+
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 33445579999999999999998877766553
No 418
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=25.19 E-value=51 Score=21.67 Aligned_cols=35 Identities=23% Similarity=0.871 Sum_probs=14.8
Q ss_pred ccccccccccCceec--ccCcHhHHHhHHhcC------CCCCC
Q 016262 92 CMICQALLFECSKCT--PCSHVYCKACISRFK------DCPLC 126 (392)
Q Consensus 92 C~iC~~~~~~~p~~~--~C~h~fC~~Ci~~~~------~CP~C 126 (392)
|.+|.++...--... .|+-.+=..|+..++ .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777766333333 365444455666653 28876
No 419
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.86 E-value=3.6e+02 Score=28.87 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 016262 329 KVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 329 ~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+++-.|-.+.++++|+++|++|.
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 44555555555555555555554
No 420
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.62 E-value=5.8e+02 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHh--hcCCCchhHHHhhcc
Q 016262 341 DVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWN 372 (392)
Q Consensus 341 ~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~~ 372 (392)
..++......+..+..+ ...+....++..+..
T Consensus 233 ~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~~ 266 (291)
T TIGR00996 233 DDALAALSGASAQVRDLLAENRPNLPQALANLAP 266 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34444444433333333 233333344444443
No 421
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.54 E-value=7.7e+02 Score=27.44 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+.-..|++++|.+.-+.++... +... ..+. +..++.++.+....|++.+|+.+..++.++.+..
T Consensus 467 val~~~~~e~a~~lar~al~~L-------~~~~-~~~r-~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 467 VALNRGDPEEAEDLARLALVQL-------PEAA-YRSR-IVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHhc-------cccc-chhh-hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 3344566666666665555432 2211 1112 4456778899999999999999999999887764
No 422
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=24.51 E-value=1.1e+02 Score=27.58 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 016262 330 VADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al 351 (392)
|+.....+|++.+|...|+|++
T Consensus 95 La~al~elGr~~EA~~hy~qal 116 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQAL 116 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHh
Confidence 5566677777777777777765
No 423
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=24.40 E-value=3e+02 Score=20.47 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 285 l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
-....|++++|+.+|.++++.........++
T Consensus 15 e~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 15 ELDQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3445699999999999999988887766654
No 424
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=24.34 E-value=6.5e+02 Score=25.03 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHH------------HhhcCCCCCchhhHHHHHHHH-------------------HHHHHHhcCC
Q 016262 291 DLQAARSYYVRSLNVRRD------------AVKRHSNVPSQVLDVAVSLAK-------------------VADVDRSIGN 339 (392)
Q Consensus 291 ~l~~A~~~~e~aL~i~~~------------~~~~~~~~~~~~~dla~sl~~-------------------l~~v~~~lg~ 339 (392)
.+++|+..|.++-++... +.+...........++..|+. +..+....|+
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d 320 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD 320 (374)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC
Confidence 488999999988765432 122222222222233433332 3456667788
Q ss_pred HHHHHHHHHHHHH
Q 016262 340 EDVAVDGFQEAIK 352 (392)
Q Consensus 340 ~~~A~~~~~~al~ 352 (392)
+++|+..++++.+
T Consensus 321 ~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 321 YEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887763
No 425
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=24.32 E-value=3.5e+02 Score=25.41 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 016262 338 GNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 338 g~~~~A~~~~~~al~ile~l 357 (392)
+..+.|-..|++--+-++++
T Consensus 257 ~~le~aq~~~q~hkekYeKl 276 (341)
T KOG3876|consen 257 NLLEGAQEKFQAHKEKYEKL 276 (341)
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 45566667777766666666
No 426
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=24.20 E-value=3.3e+02 Score=26.72 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH---HHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLNVR---RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~i~---~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
-.+.++..++...+..+.+|.+-++.. +.++ +.....+..+|..+|.|..|.+..+-|..+.+.
T Consensus 37 VwvSEiMLQQT~v~~Vi~yy~~fl~rfPti~~LA-------------~A~~~evl~~W~gLGYysRArnL~~~A~~v~~~ 103 (342)
T COG1194 37 VWVSEIMLQQTQVATVIPYYERFLERFPTIKALA-------------AAPEDEVLKAWEGLGYYSRARNLHKAAQEVVER 103 (342)
T ss_pred ehhHHHHhhhccHhhhhhhHHHHHHhCCCHHHHh-------------cCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345667777788888899999887643 2221 112346778999999999999998888888888
Q ss_pred h-hcCCCchh
Q 016262 357 L-TLKPEEAG 365 (392)
Q Consensus 357 l-~~~~~~a~ 365 (392)
- ..-|++..
T Consensus 104 ~~G~~P~~~~ 113 (342)
T COG1194 104 HGGEFPDDEE 113 (342)
T ss_pred cCCCCCCCHH
Confidence 6 44455543
No 427
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.13 E-value=3.8e+02 Score=21.52 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=30.1
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 263 ~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~ 308 (392)
.|.....+++..++.....|...+...+.|.+-...+..++...+.
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA 51 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 3444556778888888889999998888888777777776665444
No 428
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=24.12 E-value=5.9e+02 Score=24.90 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHHhhcCCCC----CchhhHHHHHHHHHHHHHHhc-
Q 016262 272 IHTLSVSLNKIGDLKYYG---------GDLQAARSYYVRSLNVRRDAVKRHSNV----PSQVLDVAVSLAKVADVDRSI- 337 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~---------g~l~~A~~~~e~aL~i~~~~~~~~~~~----~~~~~dla~sl~~l~~v~~~l- 337 (392)
.-+..-.+-|+|-++..+ ..+.+|..+|++|--+..-+.+..... .....++...|..+...+.+.
T Consensus 102 ~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE~ 181 (355)
T cd09241 102 KFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQEC 181 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444556666666554 337888899999887776655543222 222235566666653322221
Q ss_pred --------C-------CH-HHHHHHHHHHHHHHH
Q 016262 338 --------G-------NE-DVAVDGFQEAIKRLE 355 (392)
Q Consensus 338 --------g-------~~-~~A~~~~~~al~ile 355 (392)
| ++ .++..+|+++.+.++
T Consensus 182 ~~~Kai~~~~k~sliAKLa~qv~~~Y~~a~~~l~ 215 (355)
T cd09241 182 FWQKAISDGTKDSLIAKLAAQVSDYYQEALKYAN 215 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11 266778888888887
No 429
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.08 E-value=51 Score=31.59 Aligned_cols=17 Identities=24% Similarity=1.185 Sum_probs=14.3
Q ss_pred cCcHhHHHhHHhcC--CCC
Q 016262 108 CSHVYCKACISRFK--DCP 124 (392)
Q Consensus 108 C~h~fC~~Ci~~~~--~CP 124 (392)
||..||+.|.+.+. .|.
T Consensus 342 Cgf~FCR~C~e~yh~geC~ 360 (446)
T KOG0006|consen 342 CGFAFCRECKEAYHEGECS 360 (446)
T ss_pred chhHhHHHHHhhhccccce
Confidence 99999999999874 365
No 430
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.82 E-value=45 Score=32.10 Aligned_cols=39 Identities=31% Similarity=0.902 Sum_probs=26.5
Q ss_pred ceeccccccccccC--ceecccCcHhHHHhHH----hcCCCCCCC
Q 016262 89 PLSCMICQALLFEC--SKCTPCSHVYCKACIS----RFKDCPLCG 127 (392)
Q Consensus 89 ~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~----~~~~CP~C~ 127 (392)
...|-.|++-+... -++-.|.+.||..|=. ....||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 44599996654432 3456799999999942 235699986
No 431
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.79 E-value=33 Score=32.15 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=16.1
Q ss_pred eeccccccccccCceeccc--CcHh
Q 016262 90 LSCMICQALLFECSKCTPC--SHVY 112 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C--~h~f 112 (392)
|.||+|..-|......+-| +|+|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 7899999988644455554 4655
No 432
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.62 E-value=3.9e+02 Score=24.06 Aligned_cols=31 Identities=3% Similarity=0.036 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~ 306 (392)
.-....|+.++.....++++...|+++|.-.
T Consensus 94 ~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~ 124 (200)
T cd07639 94 LLVKEDLRGFRDARKEFERGAESLEAALQHN 124 (200)
T ss_pred HHHHhhhHHHHHHhhhHhhcchhHHHHHHHH
Confidence 3445566777777788888888888876543
No 433
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.55 E-value=2.5e+02 Score=30.10 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=61.6
Q ss_pred hHHHhHHHHH--------HHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 016262 248 DAAVAYFADS--------VEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 248 h~a~~~~e~~--------~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~ 319 (392)
|+-+++++.. .+....+.+... ...+....-..+++|..-|+++.|...|++++.+--..
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~---------- 420 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT---------- 420 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc----------
Confidence 6666666642 223334444333 45566677888999999999999999999988652221
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+-||+....+-|+..-.-.+++.|+...+.|..+
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 1256666666677776667777777766666543
No 434
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=23.41 E-value=4e+02 Score=24.41 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 016262 342 VAVDGFQEAIKRLESL 357 (392)
Q Consensus 342 ~A~~~~~~al~ile~l 357 (392)
.-++||+++-++++.|
T Consensus 201 AQl~Yh~q~~e~L~~l 216 (220)
T cd07617 201 AQATYYAQCYRHMLDL 216 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5577888888888776
No 435
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.39 E-value=39 Score=23.19 Aligned_cols=29 Identities=31% Similarity=0.852 Sum_probs=19.2
Q ss_pred eccccccccc---cCceecccCcHhHHHhHHh
Q 016262 91 SCMICQALLF---ECSKCTPCSHVYCKACISR 119 (392)
Q Consensus 91 ~C~iC~~~~~---~~p~~~~C~h~fC~~Ci~~ 119 (392)
.|.+|...|. -......||+.||..|...
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~ 35 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSN 35 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCC
Confidence 4666654332 2455678999999988753
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=23.03 E-value=8.9e+02 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Q 016262 322 DVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg-~~~~A~~~~~~al~ile~l 357 (392)
.+-..|..+..+.++-| ..+..+.++++..+-++.+
T Consensus 300 ~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 300 ELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555 5566666666666666665
No 437
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.00 E-value=66 Score=36.78 Aligned_cols=58 Identities=19% Similarity=0.620 Sum_probs=39.6
Q ss_pred CceeccccccccccCceecccCcHh-----HHHhHHhc-------CCCCCCCcCCcc-----cchhhHHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVY-----CKACISRF-------KDCPLCGADIEK-----IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~f-----C~~Ci~~~-------~~CP~C~~~~~~-----~~~n~~l~~~~~~~ 146 (392)
..+.||-|-.... ..++..||... |..|=... ..||.|+.++.. +.....+....+++
T Consensus 666 ~~rkCPkCG~~t~-~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 666 GRRRCPSCGTETY-ENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEEECCCCCCccc-cccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 4688999998866 66888898654 88885432 259999987765 44444444444444
No 438
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.74 E-value=41 Score=35.64 Aligned_cols=38 Identities=29% Similarity=0.726 Sum_probs=30.0
Q ss_pred eecccccccccc----CceecccCcHhHHHhHHhcCC-CCCCCc
Q 016262 90 LSCMICQALLFE----CSKCTPCSHVYCKACISRFKD-CPLCGA 128 (392)
Q Consensus 90 ~~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~~~-CP~C~~ 128 (392)
-.|.+|+.. .| -+.++.|+..||..|...... ||.|.-
T Consensus 655 r~C~vcq~p-edse~~v~rt~~C~~~~C~~c~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLP-EDSETDVCRTTFCYTPYCVACSLDYASISEVCGP 697 (717)
T ss_pred HHHHHhcCC-cCccccccCccccCCcchHhhhhhhhccCcccCc
Confidence 468899886 53 256778999999999988865 999964
No 439
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.40 E-value=67 Score=22.01 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=19.4
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhc------CCCCCCCc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~ 128 (392)
.|.||.|...+. .. .++.-|.... ..||.|..
T Consensus 2 ~f~CP~C~~~~~-~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFS-ES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccC-HH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 578999998533 21 2334454443 34999975
No 440
>PRK10869 recombination and repair protein; Provisional
Probab=22.01 E-value=7.5e+02 Score=25.95 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
+...+..+..+...-..+.+..+.++++...++.
T Consensus 246 l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~ 279 (553)
T PRK10869 246 LYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQE 279 (553)
T ss_pred HHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHH
Confidence 3333344433333333344444444444444444
No 441
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.92 E-value=18 Score=34.44 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=18.8
Q ss_pred ceeccccccccccCceeccc-----CcHhHHHhHHhc----CCCCCCCcC
Q 016262 89 PLSCMICQALLFECSKCTPC-----SHVYCKACISRF----KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C-----~h~fC~~Ci~~~----~~CP~C~~~ 129 (392)
.-.||||-.... -.++..= .+.+|..|-.+| ..||.|+..
T Consensus 172 ~g~CPvCGs~P~-~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPV-LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EE-EEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCc-eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 368999998754 3333322 356799999998 359999864
No 442
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=21.90 E-value=6.7e+02 Score=27.91 Aligned_cols=77 Identities=18% Similarity=0.067 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcchhHH
Q 016262 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTT 376 (392)
Q Consensus 298 ~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~~~~~ 376 (392)
.|.++++....+..+.++.. ....--|.+..++|.+.+|...+ +.+ ...+.+..+++-++. +|
T Consensus 24 qfkkal~~~~kllkk~Pn~~-------~a~vLkaLsl~r~gk~~ea~~~L-------e~~~~~~~~D~~tLq~l~~--~y 87 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNAL-------YAKVLKALSLFRLGKGDEALKLL-------EALYGLKGTDDLTLQFLQN--VY 87 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHHHhcCchhHHHHH-------hhhccCCCCchHHHHHHHH--HH
Confidence 45566666666666666532 11222356778888888888533 233 344446667777777 88
Q ss_pred HHHHhhhccccchh
Q 016262 377 NFQKNHLNQLPKFR 390 (392)
Q Consensus 377 ~~l~~~~~~l~~~~ 390 (392)
..++.+.++...|+
T Consensus 88 ~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYE 101 (932)
T ss_pred HHHhhhhHHHHHHH
Confidence 88888888887774
No 443
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=21.83 E-value=2.2e+02 Score=26.23 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchh
Q 016262 322 DVAVSLAK-VADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAG 365 (392)
Q Consensus 322 dla~sl~~-l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~ 365 (392)
+|.+.+++ +.|++..+..++.|.--|....--++++ +..|..+.
T Consensus 120 ~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~ 166 (229)
T PF06456_consen 120 DLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAK 166 (229)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhc
Confidence 44444443 4677777777777777777777777776 35555443
No 444
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.76 E-value=8.4e+02 Score=28.25 Aligned_cols=13 Identities=23% Similarity=0.033 Sum_probs=5.7
Q ss_pred cCCHHHHHHHHHH
Q 016262 337 IGNEDVAVDGFQE 349 (392)
Q Consensus 337 lg~~~~A~~~~~~ 349 (392)
.|+...|.....+
T Consensus 1538 ~~di~ra~~L~s~ 1550 (1758)
T KOG0994|consen 1538 KGDIARAENLQSE 1550 (1758)
T ss_pred hhhHHHHHHHHHH
Confidence 3555444444333
No 445
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13041 PPR_2: PPR repeat family
Probab=21.66 E-value=2.1e+02 Score=18.61 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.+.+-+=..+.+.|+.++|+..|++..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456667778888999999999888754
No 447
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.32 E-value=5.9e+02 Score=22.87 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~ 306 (392)
.......|+.++.....++++...|++++.-.
T Consensus 95 ~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~ 126 (202)
T cd07606 95 AQFADTDLQEVKDARRRFDKASLDYEQARSKF 126 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777788888888888877643
No 448
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=21.32 E-value=2.3e+02 Score=29.26 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCchhhHHHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016262 292 LQAARSYYVRSLNVRRDAVKRHS--NVPSQVLDVAVSL---------AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 292 l~~A~~~~e~aL~i~~~~~~~~~--~~~~~~~dla~sl---------~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~ 360 (392)
..+|..+|.++++.-+....... ++.....+..... -.++.....+|+.++|+..|++.++..-.+..-
T Consensus 216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l 295 (539)
T PF04184_consen 216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNL 295 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchh
Q ss_pred CCchhHHHhhcchhHHHHHHhhhcc
Q 016262 361 PEEAGLEQRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 361 ~~~a~l~~~~~~~~~~~~l~~~~~~ 385 (392)
--...|..-+.....|..++.....
T Consensus 296 ~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 296 NIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
No 449
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=21.28 E-value=2.9e+02 Score=27.60 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 294 ~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.|+..+.+|++-.+.+.. ...+...++||.++..||.++......+ -..|.+|.+|+++-
T Consensus 329 ~a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQ--e~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQ--EKAYKEAEKILKKA 388 (404)
T ss_dssp THHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHH--HHHHHHHHHHHHHH
Confidence 355566666665555444 3334555677777777776655443322 46788888888886
No 450
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.11 E-value=6.7e+02 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.089 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhc
Q 016262 338 GNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 338 g~~~~A~~~~~~al~ile~l~~ 359 (392)
.+...|...|++|...+++.+.
T Consensus 570 ~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 570 ENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred hHHHHHHHHHHHHHHHHHhcCc
Confidence 3667888899999888888744
No 451
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.04 E-value=70 Score=21.93 Aligned_cols=11 Identities=45% Similarity=1.313 Sum_probs=5.4
Q ss_pred CCCCCCcCCcc
Q 016262 122 DCPLCGADIEK 132 (392)
Q Consensus 122 ~CP~C~~~~~~ 132 (392)
.||+|+.++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 49999987665
No 452
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.72 E-value=9.9e+02 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+|+..|.+--.....-++|++|++....|++.
T Consensus 514 ~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~ 545 (560)
T PF06160_consen 514 EVDEALTEAEDLFRNEYDYEKALETIATALEK 545 (560)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 56666666666667678888888766666543
No 453
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=20.67 E-value=9.1e+02 Score=24.64 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh--c-CCCCCchhhHHHHHHH-HHHHHHHhcCCHHHHH
Q 016262 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK--R-HSNVPSQVLDVAVSLA-KVADVDRSIGNEDVAV 344 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~--~-~~~~~~~~~dla~sl~-~l~~v~~~lg~~~~A~ 344 (392)
+++.+-+..++..... .+.++.|..|...|..+|+....... . ........+-|+.-+. +|...|-.+++-.-|+
T Consensus 170 PqiDkwl~vAL~das~-~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 170 PQIDKWLQVALKDASS-CYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred hhHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 3344445555555443 45778999999999999997655322 2 2333444445555555 5788899999999999
Q ss_pred HHHHHHH
Q 016262 345 DGFQEAI 351 (392)
Q Consensus 345 ~~~~~al 351 (392)
+.-.++|
T Consensus 249 nh~hrsI 255 (569)
T PF15015_consen 249 NHSHRSI 255 (569)
T ss_pred HHHhhhh
Confidence 9766655
No 454
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=20.25 E-value=40 Score=22.82 Aligned_cols=30 Identities=30% Similarity=0.846 Sum_probs=18.6
Q ss_pred CceecccC-cHhHHHhHHhcC----CCCCCCcCCc
Q 016262 102 CSKCTPCS-HVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 102 ~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
..-.+.|. |-.|..|+.... .||.|+.++.
T Consensus 12 ~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 12 NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp -SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 44566776 666999998774 3999988664
No 455
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=20.17 E-value=1.5e+02 Score=29.10 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
|..-|..+..+|.|++|++-|..++ ...|.++.+.-++++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~i------a~~P~NpV~~~NRA~ 139 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAI------AVYPHNPVYHINRAL 139 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhh------ccCCCCccchhhHHH
Confidence 4456889999999999999998877 444555544444444
No 456
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=20.15 E-value=3.2e+02 Score=24.96 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
...|......+..+-....++..+...|..++.+
T Consensus 37 ~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~ 70 (219)
T cd07621 37 HNRIKDATAKADKMTRKHKDVADSYIKISAALTQ 70 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555543
No 457
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=20.02 E-value=1.5e+02 Score=27.33 Aligned_cols=75 Identities=21% Similarity=0.150 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+-+-|.++..+|=..-|+..|.++|.|+= +++...|-+|.-+..-|+++.|.+.|.-.+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P--------------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~----- 126 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRP--------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVL----- 126 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCC--------------CcHHHHHHHHHHHHhcccchHHHHHhhhHh-----
Confidence 3455668888888888888888888887632 346678888999999999999988777654
Q ss_pred hhcCCCchhHHHhhc
Q 016262 357 LTLKPEEAGLEQRCW 371 (392)
Q Consensus 357 l~~~~~~a~l~~~~~ 371 (392)
+++|.......+++
T Consensus 127 -ELDp~y~Ya~lNRg 140 (297)
T COG4785 127 -ELDPTYNYAHLNRG 140 (297)
T ss_pred -ccCCcchHHHhccc
Confidence 56666655444443
Done!