Query 016262
Match_columns 392
No_of_seqs 262 out of 2445
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.3 1.3E-12 4.3E-17 101.9 5.5 62 88-150 12-83 (92)
2 3n71_A Histone lysine methyltr 99.3 1.2E-11 4.2E-16 125.2 12.7 140 242-392 320-461 (490)
3 1t1h_A Gspef-atpub14, armadill 99.3 1.7E-12 5.7E-17 98.0 2.9 61 88-149 7-74 (78)
4 2kr4_A Ubiquitin conjugation f 99.2 3.3E-12 1.1E-16 98.1 3.4 62 88-150 13-80 (85)
5 2kre_A Ubiquitin conjugation f 99.2 4.6E-12 1.6E-16 100.3 4.2 61 88-149 28-94 (100)
6 1wgm_A Ubiquitin conjugation f 99.2 2E-11 6.8E-16 96.2 7.4 62 88-150 21-89 (98)
7 1jm7_B BARD1, BRCA1-associated 99.2 5.2E-12 1.8E-16 103.1 3.5 63 88-151 21-88 (117)
8 3fl2_A E3 ubiquitin-protein li 99.2 8E-12 2.7E-16 103.0 2.9 61 88-149 51-119 (124)
9 2y43_A E3 ubiquitin-protein li 99.1 2.6E-11 8.8E-16 95.8 3.9 64 88-152 21-91 (99)
10 4ayc_A E3 ubiquitin-protein li 99.1 2.5E-11 8.6E-16 101.9 3.8 59 88-147 52-114 (138)
11 3qww_A SET and MYND domain-con 99.1 5.3E-10 1.8E-14 111.4 13.3 120 243-371 310-431 (433)
12 3lrq_A E3 ubiquitin-protein li 99.1 2.8E-11 9.7E-16 95.8 2.8 61 88-149 21-89 (100)
13 2yu4_A E3 SUMO-protein ligase 99.1 4.2E-11 1.4E-15 93.7 3.6 62 88-150 6-83 (94)
14 1z6u_A NP95-like ring finger p 99.1 5.5E-11 1.9E-15 101.2 3.7 60 88-148 77-144 (150)
15 2ckl_A Polycomb group ring fin 99.0 7E-11 2.4E-15 94.9 3.1 61 88-149 14-85 (108)
16 2csy_A Zinc finger protein 183 99.0 1.6E-10 5.5E-15 87.7 4.7 50 88-138 14-68 (81)
17 2egp_A Tripartite motif-contai 99.0 2.3E-11 7.9E-16 91.8 -0.4 52 88-140 11-75 (79)
18 3edt_B KLC 2, kinesin light ch 99.0 3.3E-09 1.1E-13 96.3 13.4 182 194-392 12-195 (283)
19 3l11_A E3 ubiquitin-protein li 99.0 1.6E-10 5.6E-15 93.7 3.5 61 88-149 14-88 (115)
20 2f42_A STIP1 homology and U-bo 99.0 1.9E-10 6.6E-15 100.0 3.2 61 88-149 105-172 (179)
21 3ulq_A Response regulator aspa 99.0 6E-09 2.1E-13 100.9 13.8 182 189-392 109-290 (383)
22 2c2l_A CHIP, carboxy terminus 99.0 2.9E-10 1E-14 106.4 4.2 61 88-149 207-274 (281)
23 3qwp_A SET and MYND domain-con 99.0 2.8E-09 9.4E-14 106.2 11.3 126 243-379 299-426 (429)
24 3qww_A SET and MYND domain-con 98.9 1.3E-09 4.4E-14 108.6 8.9 116 269-392 289-408 (433)
25 2ifu_A Gamma-SNAP; membrane fu 98.9 3.4E-09 1.2E-13 100.1 10.9 176 193-392 46-221 (307)
26 3hct_A TNF receptor-associated 98.9 4.5E-10 1.5E-14 91.6 3.8 58 88-146 17-81 (118)
27 2ifu_A Gamma-SNAP; membrane fu 98.9 1.1E-09 3.7E-14 103.5 7.1 181 193-392 1-181 (307)
28 2ysl_A Tripartite motif-contai 98.9 8.2E-10 2.8E-14 81.8 4.9 44 88-132 19-69 (73)
29 1jm7_A BRCA1, breast cancer ty 98.9 1.6E-10 5.4E-15 93.2 0.9 61 88-149 20-89 (112)
30 2ckl_B Ubiquitin ligase protei 98.9 3.9E-10 1.3E-14 97.5 3.5 60 88-148 53-121 (165)
31 3n71_A Histone lysine methyltr 98.9 2.6E-09 9E-14 108.0 8.8 114 271-392 302-419 (490)
32 2ecw_A Tripartite motif-contai 98.9 2.6E-10 8.9E-15 87.0 1.0 52 88-140 18-81 (85)
33 3nf1_A KLC 1, kinesin light ch 98.9 4E-08 1.4E-12 90.7 16.0 191 185-392 29-221 (311)
34 1bor_A Transcription factor PM 98.9 2.7E-10 9.2E-15 80.1 0.8 44 88-132 5-49 (56)
35 3q15_A PSP28, response regulat 98.9 5.8E-09 2E-13 101.0 10.6 183 187-392 105-287 (378)
36 2yur_A Retinoblastoma-binding 98.9 4.7E-10 1.6E-14 83.6 2.0 43 88-131 14-63 (74)
37 2djb_A Polycomb group ring fin 98.9 1.1E-09 3.6E-14 81.1 3.8 44 88-132 14-62 (72)
38 3gw4_A Uncharacterized protein 98.9 9.3E-09 3.2E-13 89.4 10.5 172 193-392 2-173 (203)
39 3u3w_A Transcriptional activat 98.9 3.2E-08 1.1E-12 92.4 14.9 181 190-392 82-263 (293)
40 2d8t_A Dactylidin, ring finger 98.9 9.2E-10 3.1E-14 81.3 3.4 44 88-132 14-61 (71)
41 2ecy_A TNF receptor-associated 98.9 8.9E-10 3E-14 80.1 3.2 44 88-132 14-62 (66)
42 3knv_A TNF receptor-associated 98.9 3E-10 1E-14 95.6 0.3 51 79-130 18-76 (141)
43 1qqe_A Vesicular transport pro 98.9 1.1E-08 3.8E-13 95.8 11.1 176 194-392 48-225 (292)
44 3edt_B KLC 2, kinesin light ch 98.9 2.4E-08 8.3E-13 90.5 13.1 190 186-392 46-278 (283)
45 2ecv_A Tripartite motif-contai 98.8 3.1E-10 1.1E-14 86.6 0.2 52 88-140 18-81 (85)
46 3ro3_A PINS homolog, G-protein 98.8 1.4E-08 4.7E-13 83.9 10.0 146 232-392 10-155 (164)
47 1qqe_A Vesicular transport pro 98.8 1.1E-08 3.9E-13 95.8 10.5 137 241-392 47-184 (292)
48 3htk_C E3 SUMO-protein ligase 98.8 3.1E-09 1.1E-13 96.9 6.0 62 88-150 180-252 (267)
49 4ic3_A E3 ubiquitin-protein li 98.8 8.6E-10 2.9E-14 82.2 1.5 44 88-132 23-67 (74)
50 1g25_A CDK-activating kinase a 98.8 1.5E-09 5.3E-14 78.5 2.3 44 88-132 2-55 (65)
51 2ct2_A Tripartite motif protei 98.8 9.9E-10 3.4E-14 84.4 1.3 44 88-132 14-68 (88)
52 1rmd_A RAG1; V(D)J recombinati 98.8 2.1E-09 7.3E-14 87.2 3.2 57 88-145 22-86 (116)
53 2ysj_A Tripartite motif-contai 98.8 1.7E-09 6E-14 77.7 2.0 38 88-126 19-63 (63)
54 4gcn_A Protein STI-1; structur 98.8 2.4E-08 8.1E-13 81.7 8.9 105 272-392 4-109 (127)
55 3nf1_A KLC 1, kinesin light ch 98.8 1E-07 3.6E-12 87.8 14.2 188 188-392 74-304 (311)
56 2ea6_A Ring finger protein 4; 98.8 3.4E-09 1.2E-13 77.4 3.1 43 88-131 14-67 (69)
57 3hcs_A TNF receptor-associated 98.7 2.7E-09 9.3E-14 92.6 2.5 58 88-146 17-81 (170)
58 3ng2_A RNF4, snurf, ring finge 98.7 2.5E-09 8.7E-14 78.6 1.5 44 88-132 9-63 (71)
59 3sf4_A G-protein-signaling mod 98.7 1.6E-07 5.6E-12 90.0 14.4 147 231-392 187-333 (406)
60 2ecj_A Tripartite motif-contai 98.7 7.7E-09 2.6E-13 72.8 3.7 38 88-126 14-58 (58)
61 3sf4_A G-protein-signaling mod 98.7 1.2E-07 4E-12 91.0 13.1 181 187-392 13-213 (406)
62 1x4j_A Ring finger protein 38; 98.7 5.8E-09 2E-13 77.7 3.0 45 86-131 20-71 (75)
63 4a1s_A PINS, partner of inscut 98.7 7.3E-08 2.5E-12 93.3 11.5 147 231-392 223-369 (411)
64 4a1s_A PINS, partner of inscut 98.7 6.7E-08 2.3E-12 93.5 11.2 146 232-392 167-329 (411)
65 2yho_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 80.1 1.4 43 89-132 18-61 (79)
66 3ulq_A Response regulator aspa 98.7 4.2E-08 1.5E-12 94.8 9.2 142 237-392 109-250 (383)
67 3qwp_A SET and MYND domain-con 98.7 1.3E-08 4.4E-13 101.3 5.6 112 272-392 284-397 (429)
68 2ecg_A Baculoviral IAP repeat- 98.7 6.3E-09 2.2E-13 77.6 2.3 44 88-132 24-68 (75)
69 3q15_A PSP28, response regulat 98.7 4E-08 1.4E-12 95.1 8.6 143 236-392 106-248 (378)
70 1e4u_A Transcriptional repress 98.7 7.5E-09 2.6E-13 77.8 2.6 45 88-132 10-62 (78)
71 2qfc_A PLCR protein; TPR, HTH, 98.7 1.7E-07 5.7E-12 87.5 12.3 179 192-392 84-263 (293)
72 2xeu_A Ring finger protein 4; 98.7 4.9E-09 1.7E-13 75.3 1.3 44 88-132 2-56 (64)
73 1chc_A Equine herpes virus-1 r 98.6 7E-09 2.4E-13 75.6 2.0 45 88-132 4-52 (68)
74 4gyw_A UDP-N-acetylglucosamine 98.6 4.3E-08 1.5E-12 103.8 8.6 133 226-391 4-136 (723)
75 3ro2_A PINS homolog, G-protein 98.6 1.7E-07 5.9E-12 86.7 11.5 146 232-392 184-329 (338)
76 3ro2_A PINS homolog, G-protein 98.6 1.7E-07 5.8E-12 86.7 11.3 182 187-391 47-248 (338)
77 2ecm_A Ring finger and CHY zin 98.6 1.2E-08 4E-13 71.1 2.0 44 88-131 4-54 (55)
78 2kiz_A E3 ubiquitin-protein li 98.6 2.2E-08 7.7E-13 73.1 3.7 45 88-132 13-63 (69)
79 3gw4_A Uncharacterized protein 98.6 1.7E-06 5.9E-11 74.7 16.0 166 185-370 28-193 (203)
80 1iym_A EL5; ring-H2 finger, ub 98.6 1.8E-08 6.2E-13 70.1 2.4 44 88-131 4-54 (55)
81 2ect_A Ring finger protein 126 98.6 1.7E-08 5.8E-13 75.7 2.2 45 88-132 14-64 (78)
82 3ro3_A PINS homolog, G-protein 98.6 2.9E-06 1E-10 69.6 15.9 148 189-357 15-162 (164)
83 2l0b_A E3 ubiquitin-protein li 98.6 1.9E-08 6.6E-13 77.9 2.2 43 88-131 39-88 (91)
84 2ecn_A Ring finger protein 141 98.5 8.8E-09 3E-13 75.6 -0.1 43 88-132 14-60 (70)
85 2ea5_A Cell growth regulator w 98.5 3.8E-08 1.3E-12 71.8 3.1 44 88-132 14-58 (68)
86 4g1t_A Interferon-induced prot 98.5 3.3E-07 1.1E-11 90.5 10.9 139 244-392 24-164 (472)
87 2hr2_A Hypothetical protein; a 98.5 4.3E-07 1.5E-11 77.6 9.6 114 275-392 10-128 (159)
88 4gyw_A UDP-N-acetylglucosamine 98.5 1.7E-07 5.8E-12 99.2 8.4 156 190-392 16-171 (723)
89 4gco_A Protein STI-1; structur 98.5 6.1E-07 2.1E-11 73.2 9.7 100 271-392 8-107 (126)
90 2ep4_A Ring finger protein 24; 98.5 5.8E-08 2E-12 71.9 3.2 44 88-132 14-64 (74)
91 4ap4_A E3 ubiquitin ligase RNF 98.5 2.6E-08 8.8E-13 82.3 0.9 44 88-132 6-60 (133)
92 1v87_A Deltex protein 2; ring- 98.5 4.2E-08 1.4E-12 79.2 1.9 43 89-132 25-94 (114)
93 4b4t_Q 26S proteasome regulato 98.4 3.8E-07 1.3E-11 89.0 8.2 189 189-392 10-201 (434)
94 3vtx_A MAMA; tetratricopeptide 98.4 6.9E-07 2.4E-11 76.6 8.5 154 192-392 14-167 (184)
95 4i17_A Hypothetical protein; T 98.4 1.7E-06 5.8E-11 76.9 11.0 158 186-382 10-169 (228)
96 1wim_A KIAA0161 protein; ring 98.3 8.1E-08 2.8E-12 74.8 0.9 60 88-148 4-83 (94)
97 2vje_B MDM4 protein; proto-onc 98.3 9.1E-08 3.1E-12 68.7 0.9 44 88-132 6-56 (63)
98 4gcn_A Protein STI-1; structur 98.3 2.7E-06 9.1E-11 69.3 9.8 102 233-352 10-111 (127)
99 3rkv_A Putative peptidylprolyl 98.3 4.4E-06 1.5E-10 70.3 11.5 111 274-392 9-123 (162)
100 3u3w_A Transcriptional activat 98.3 5.6E-06 1.9E-10 77.0 12.9 119 233-363 157-276 (293)
101 2ecl_A Ring-box protein 2; RNF 98.3 3.7E-07 1.3E-11 69.0 3.7 45 88-132 14-76 (81)
102 4g1t_A Interferon-induced prot 98.3 2E-06 6.9E-11 84.8 10.0 142 234-391 54-200 (472)
103 3t6p_A Baculoviral IAP repeat- 98.3 1.2E-07 4.1E-12 91.2 1.0 44 88-132 294-338 (345)
104 2pl2_A Hypothetical conserved 98.3 9.9E-07 3.4E-11 78.6 6.7 155 190-392 46-211 (217)
105 1hz4_A MALT regulatory protein 98.3 1.5E-05 5.2E-10 76.1 15.1 179 190-391 21-199 (373)
106 2vje_A E3 ubiquitin-protein li 98.3 1.2E-07 4.1E-12 68.3 0.2 44 88-132 7-57 (64)
107 4eqf_A PEX5-related protein; a 98.2 6.2E-06 2.1E-10 78.4 11.7 168 186-391 68-272 (365)
108 3uq3_A Heat shock protein STI1 98.2 2E-05 7E-10 70.1 13.7 168 190-391 12-198 (258)
109 2y1n_A E3 ubiquitin-protein li 98.2 4.3E-07 1.5E-11 87.9 2.3 43 89-132 332-379 (389)
110 4ap4_A E3 ubiquitin ligase RNF 98.2 4.3E-07 1.5E-11 74.8 1.6 45 87-132 70-125 (133)
111 4eqf_A PEX5-related protein; a 98.2 1.8E-05 6.1E-10 75.2 12.9 125 237-392 183-307 (365)
112 4ga2_A E3 SUMO-protein ligase 98.1 2.6E-06 9E-11 71.4 6.1 122 237-391 3-125 (150)
113 4gco_A Protein STI-1; structur 98.1 2.6E-05 8.9E-10 63.3 11.3 112 229-371 11-122 (126)
114 3gyz_A Chaperone protein IPGC; 98.1 1.2E-05 4.1E-10 67.9 9.1 98 273-392 33-130 (151)
115 2qfc_A PLCR protein; TPR, HTH, 98.1 2.2E-05 7.6E-10 72.9 11.9 116 232-359 156-272 (293)
116 2hr2_A Hypothetical protein; a 98.1 0.00011 3.9E-09 62.5 14.9 128 234-368 14-147 (159)
117 3upv_A Heat shock protein STI1 98.1 1.2E-05 4E-10 64.5 8.1 94 276-391 4-97 (126)
118 2pl2_A Hypothetical conserved 98.0 6.4E-05 2.2E-09 66.7 13.1 156 189-392 11-177 (217)
119 3hym_B Cell division cycle pro 98.0 1.6E-05 5.6E-10 73.5 9.4 132 237-392 165-296 (330)
120 4b4t_Q 26S proteasome regulato 98.0 8.3E-06 2.8E-10 79.4 7.3 184 185-391 57-241 (434)
121 3dpl_R Ring-box protein 1; ubi 98.0 1.9E-06 6.4E-11 68.5 2.1 44 88-131 36-100 (106)
122 1fch_A Peroxisomal targeting s 98.0 4.1E-05 1.4E-09 72.3 11.9 95 276-392 217-311 (368)
123 1p5q_A FKBP52, FK506-binding p 98.0 5.4E-05 1.9E-09 72.2 12.4 136 228-385 144-283 (336)
124 1wao_1 Serine/threonine protei 98.0 9.7E-05 3.3E-09 74.1 14.4 129 231-390 6-134 (477)
125 3sz7_A HSC70 cochaperone (SGT) 98.0 1.8E-05 6.3E-10 66.6 7.7 94 276-391 11-104 (164)
126 3uq3_A Heat shock protein STI1 97.9 2.8E-05 9.5E-10 69.2 9.1 139 233-392 7-165 (258)
127 2bay_A PRE-mRNA splicing facto 97.9 2.5E-06 8.7E-11 60.6 1.6 43 89-132 3-50 (61)
128 1hz4_A MALT regulatory protein 97.9 3.1E-05 1.1E-09 73.9 9.6 145 232-392 15-161 (373)
129 3rkv_A Putative peptidylprolyl 97.9 0.00014 4.6E-09 61.0 12.6 131 233-385 13-151 (162)
130 2l6j_A TPR repeat-containing p 97.9 0.00017 6E-09 55.4 11.9 93 277-391 5-103 (111)
131 2vq2_A PILW, putative fimbrial 97.9 5.3E-05 1.8E-09 65.8 9.8 157 190-391 15-172 (225)
132 3upv_A Heat shock protein STI1 97.9 0.00018 6.2E-09 57.3 12.3 114 234-372 7-120 (126)
133 1ihg_A Cyclophilin 40; ppiase 97.9 5.6E-05 1.9E-09 73.3 10.5 113 272-392 219-333 (370)
134 2ho1_A Type 4 fimbrial biogene 97.9 4.3E-05 1.5E-09 68.2 9.0 93 186-303 40-132 (252)
135 1w3b_A UDP-N-acetylglucosamine 97.9 2.2E-05 7.5E-10 75.3 7.3 60 325-392 136-195 (388)
136 3vtx_A MAMA; tetratricopeptide 97.8 9.2E-05 3.1E-09 63.0 10.3 101 276-392 5-133 (184)
137 1fch_A Peroxisomal targeting s 97.8 0.00011 3.7E-09 69.4 11.8 160 194-392 192-356 (368)
138 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00033 1.1E-08 60.7 13.8 134 231-386 38-176 (198)
139 3qky_A Outer membrane assembly 97.8 4.6E-05 1.6E-09 69.1 8.5 175 186-391 18-220 (261)
140 2h6f_A Protein farnesyltransfe 97.8 1.8E-05 6.2E-10 77.3 6.1 127 231-390 97-224 (382)
141 1p5q_A FKBP52, FK506-binding p 97.8 3.1E-05 1E-09 74.0 7.4 113 272-392 143-256 (336)
142 2vgx_A Chaperone SYCD; alterna 97.8 3.6E-05 1.2E-09 64.2 7.0 93 277-391 22-114 (148)
143 1a17_A Serine/threonine protei 97.8 0.00024 8.2E-09 58.7 12.1 130 231-391 13-142 (166)
144 3as5_A MAMA; tetratricopeptide 97.8 5.2E-05 1.8E-09 63.5 7.9 156 190-392 15-170 (186)
145 3u4t_A TPR repeat-containing p 97.8 1.4E-05 4.8E-10 72.3 4.4 128 188-351 8-135 (272)
146 2q7f_A YRRB protein; TPR, prot 97.8 5E-05 1.7E-09 67.1 7.9 154 192-392 66-219 (243)
147 2vsy_A XCC0866; transferase, g 97.8 3.8E-05 1.3E-09 78.3 8.1 127 233-392 25-154 (568)
148 4abn_A Tetratricopeptide repea 97.8 8.6E-05 2.9E-09 74.3 10.5 124 235-392 106-247 (474)
149 3hym_B Cell division cycle pro 97.8 1.7E-05 5.9E-10 73.4 5.0 128 238-392 132-262 (330)
150 3gyz_A Chaperone protein IPGC; 97.8 4.9E-05 1.7E-09 64.1 7.3 101 228-353 33-133 (151)
151 1w3b_A UDP-N-acetylglucosamine 97.8 8.9E-05 3E-09 71.0 10.0 91 278-390 171-261 (388)
152 4abn_A Tetratricopeptide repea 97.8 4.9E-05 1.7E-09 76.1 8.4 117 245-391 193-317 (474)
153 2y4t_A DNAJ homolog subfamily 97.8 0.00024 8.1E-09 69.1 12.9 137 234-392 214-355 (450)
154 3q49_B STIP1 homology and U bo 97.7 0.00015 5.1E-09 58.3 9.6 93 277-391 10-102 (137)
155 4i17_A Hypothetical protein; T 97.7 0.00018 6.2E-09 63.5 10.9 152 189-372 48-222 (228)
156 4a0k_B E3 ubiquitin-protein li 97.7 4.3E-06 1.5E-10 67.5 -0.0 44 88-131 47-111 (117)
157 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00015 5E-09 72.3 11.0 137 228-386 265-405 (457)
158 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00011 3.9E-09 63.7 9.0 109 272-392 34-148 (198)
159 2xpi_A Anaphase-promoting comp 97.7 0.00011 3.8E-09 74.4 10.0 98 278-391 443-541 (597)
160 2xcb_A PCRH, regulatory protei 97.7 7.1E-05 2.4E-09 61.5 7.1 93 277-391 19-111 (142)
161 3u4t_A TPR repeat-containing p 97.7 0.00011 3.8E-09 66.2 9.0 127 236-392 8-134 (272)
162 1elr_A TPR2A-domain of HOP; HO 97.7 0.00016 5.3E-09 56.9 8.8 101 276-392 4-105 (131)
163 3ieg_A DNAJ homolog subfamily 97.7 0.00019 6.5E-09 66.8 10.6 135 236-392 193-332 (359)
164 3urz_A Uncharacterized protein 97.7 0.00023 7.7E-09 62.6 10.5 93 243-353 16-117 (208)
165 1hxi_A PEX5, peroxisome target 97.7 0.00011 3.8E-09 58.9 7.8 92 279-392 20-111 (121)
166 2q7f_A YRRB protein; TPR, prot 97.7 2.7E-05 9.3E-10 68.8 4.3 153 192-391 32-184 (243)
167 2ho1_A Type 4 fimbrial biogene 97.7 0.00015 5.3E-09 64.5 9.2 159 188-391 76-234 (252)
168 2h6f_A Protein farnesyltransfe 97.7 1.7E-05 5.8E-10 77.5 2.9 145 194-385 108-254 (382)
169 2xpi_A Anaphase-promoting comp 97.6 0.00017 5.7E-09 73.0 10.3 129 238-392 448-576 (597)
170 3cv0_A Peroxisome targeting si 97.6 0.00035 1.2E-08 64.3 11.7 166 186-391 24-231 (327)
171 2vq2_A PILW, putative fimbrial 97.6 0.00026 9E-09 61.3 9.8 128 233-391 10-138 (225)
172 1ihg_A Cyclophilin 40; ppiase 97.6 0.00065 2.2E-08 65.7 13.5 133 232-386 224-361 (370)
173 4ga2_A E3 SUMO-protein ligase 97.6 1.5E-05 5.3E-10 66.6 1.6 90 281-392 2-91 (150)
174 1xnf_A Lipoprotein NLPI; TPR, 97.6 0.00039 1.3E-08 62.5 11.1 120 243-391 17-136 (275)
175 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.00012 3.9E-09 63.8 7.3 124 239-392 14-147 (213)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 8.1E-05 2.8E-09 74.2 7.0 113 272-392 264-377 (457)
177 3cv0_A Peroxisome targeting si 97.6 0.00011 3.8E-09 67.7 7.4 158 194-392 149-312 (327)
178 1a17_A Serine/threonine protei 97.6 0.0005 1.7E-08 56.7 10.7 97 274-392 11-107 (166)
179 2c2l_A CHIP, carboxy terminus 97.6 0.00023 7.8E-09 65.9 9.4 94 277-392 5-98 (281)
180 2vyi_A SGTA protein; chaperone 97.6 0.00066 2.3E-08 53.1 10.9 94 276-391 12-105 (131)
181 2y4t_A DNAJ homolog subfamily 97.6 0.00031 1E-08 68.3 10.7 165 186-390 29-201 (450)
182 2lni_A Stress-induced-phosphop 97.6 0.00022 7.4E-09 56.5 7.9 93 277-391 17-109 (133)
183 3fp2_A TPR repeat-containing p 97.6 0.00011 3.7E-09 73.2 7.4 130 236-392 349-488 (537)
184 3k9i_A BH0479 protein; putativ 97.5 4.6E-05 1.6E-09 60.4 3.6 85 289-392 3-87 (117)
185 3sz7_A HSC70 cochaperone (SGT) 97.5 0.00077 2.6E-08 56.3 11.4 97 233-354 13-109 (164)
186 1elw_A TPR1-domain of HOP; HOP 97.5 0.00024 8.1E-09 54.7 7.6 93 277-391 5-97 (118)
187 2pzi_A Probable serine/threoni 97.5 0.00014 4.9E-09 76.2 8.2 159 193-392 401-560 (681)
188 3fp2_A TPR repeat-containing p 97.5 0.00019 6.3E-09 71.5 8.6 94 277-392 311-404 (537)
189 3ieg_A DNAJ homolog subfamily 97.5 0.00033 1.1E-08 65.2 9.8 160 192-391 46-213 (359)
190 2dba_A Smooth muscle cell asso 97.5 0.00022 7.5E-09 57.7 7.5 98 276-392 28-125 (148)
191 1ouv_A Conserved hypothetical 97.5 0.00034 1.2E-08 63.5 9.3 86 190-304 13-106 (273)
192 2gw1_A Mitochondrial precursor 97.5 0.00016 5.5E-09 71.3 7.0 130 236-392 343-475 (514)
193 1ouv_A Conserved hypothetical 97.5 0.00018 6.3E-09 65.3 6.9 91 233-352 8-106 (273)
194 3urz_A Uncharacterized protein 97.4 0.00051 1.7E-08 60.3 9.4 102 279-392 7-114 (208)
195 2vyi_A SGTA protein; chaperone 97.4 0.0029 9.9E-08 49.2 12.9 110 232-372 13-122 (131)
196 2fo7_A Synthetic consensus TPR 97.4 0.00083 2.8E-08 52.5 9.7 120 239-391 9-128 (136)
197 1na0_A Designed protein CTPR3; 97.4 0.0011 3.7E-08 51.3 10.1 93 277-391 10-102 (125)
198 2xev_A YBGF; tetratricopeptide 97.4 0.00052 1.8E-08 54.4 8.1 92 280-390 6-100 (129)
199 2vgx_A Chaperone SYCD; alterna 97.4 0.00045 1.5E-08 57.4 7.9 98 232-354 22-119 (148)
200 2xcb_A PCRH, regulatory protei 97.4 0.0011 3.8E-08 54.1 10.2 98 233-355 20-117 (142)
201 1zu2_A Mitochondrial import re 97.4 0.00037 1.2E-08 59.2 7.2 90 294-392 13-117 (158)
202 1elr_A TPR2A-domain of HOP; HO 97.3 0.0019 6.6E-08 50.4 10.8 101 235-353 8-108 (131)
203 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00058 2E-08 65.1 8.9 122 231-372 179-306 (338)
204 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00029 1E-08 67.1 6.8 112 273-392 176-290 (338)
205 3k9i_A BH0479 protein; putativ 97.3 0.0018 6.2E-08 50.9 10.5 89 243-353 2-90 (117)
206 2kck_A TPR repeat; tetratricop 97.3 0.00047 1.6E-08 52.5 6.7 92 278-391 8-102 (112)
207 1hh8_A P67PHOX, NCF-2, neutrop 97.3 0.00055 1.9E-08 59.4 7.8 91 277-392 7-97 (213)
208 1xnf_A Lipoprotein NLPI; TPR, 97.3 0.001 3.5E-08 59.6 9.6 123 196-353 18-140 (275)
209 3qky_A Outer membrane assembly 97.3 0.00039 1.3E-08 62.9 6.7 129 236-391 20-173 (261)
210 2d8s_A Cellular modulator of i 97.3 0.00012 4E-09 54.9 2.5 45 88-132 14-70 (80)
211 3qou_A Protein YBBN; thioredox 97.3 0.0014 4.7E-08 60.7 10.4 130 237-392 123-281 (287)
212 3vk6_A E3 ubiquitin-protein li 97.2 8.4E-05 2.9E-09 57.2 1.6 45 90-134 2-51 (101)
213 3mkr_A Coatomer subunit epsilo 97.2 0.0046 1.6E-07 57.4 14.0 81 289-391 179-260 (291)
214 1wao_1 Serine/threonine protei 97.2 0.00013 4.4E-09 73.2 3.1 94 277-392 7-100 (477)
215 2vsy_A XCC0866; transferase, g 97.2 0.00039 1.3E-08 70.7 6.6 94 277-392 24-117 (568)
216 3q49_B STIP1 homology and U bo 97.2 0.0014 4.9E-08 52.3 8.7 98 235-357 13-110 (137)
217 2lni_A Stress-induced-phosphop 97.2 0.0026 8.8E-08 50.0 10.1 96 233-353 18-113 (133)
218 2pzi_A Probable serine/threoni 97.2 0.0013 4.4E-08 68.8 10.1 93 277-392 434-526 (681)
219 2e2e_A Formate-dependent nitri 97.1 0.00098 3.3E-08 56.2 7.6 116 243-391 22-140 (177)
220 3ma5_A Tetratricopeptide repea 97.1 0.0015 5.2E-08 50.1 7.9 67 277-357 8-74 (100)
221 3as5_A MAMA; tetratricopeptide 97.1 0.0039 1.3E-07 51.7 11.0 120 239-391 16-135 (186)
222 1na3_A Designed protein CTPR2; 97.1 0.0085 2.9E-07 43.8 11.6 77 276-372 9-85 (91)
223 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0039 1.3E-07 48.4 10.0 80 279-371 8-87 (104)
224 2dba_A Smooth muscle cell asso 97.0 0.0037 1.3E-07 50.1 9.9 95 237-353 34-128 (148)
225 2xev_A YBGF; tetratricopeptide 97.0 0.0042 1.4E-07 48.9 9.7 95 240-353 11-105 (129)
226 2fo7_A Synthetic consensus TPR 97.0 0.0033 1.1E-07 49.0 9.0 92 278-391 3-94 (136)
227 2r5s_A Uncharacterized protein 97.0 0.0021 7.1E-08 54.5 8.3 131 243-392 18-170 (176)
228 1elw_A TPR1-domain of HOP; HOP 96.9 0.012 4E-07 44.8 11.5 91 237-352 10-100 (118)
229 2gw1_A Mitochondrial precursor 96.9 0.0029 1E-07 62.1 9.9 95 274-391 4-98 (514)
230 1na0_A Designed protein CTPR3; 96.9 0.015 5.2E-07 44.5 11.9 106 236-372 14-119 (125)
231 2kc7_A BFR218_protein; tetratr 96.8 0.0079 2.7E-07 45.2 9.5 59 281-353 5-64 (99)
232 2ct0_A Non-SMC element 1 homol 96.8 0.00076 2.6E-08 49.5 3.4 45 88-132 14-64 (74)
233 2kck_A TPR repeat; tetratricop 96.8 0.0057 1.9E-07 46.2 8.6 97 233-352 8-105 (112)
234 1hxi_A PEX5, peroxisome target 96.7 0.0016 5.6E-08 51.9 5.0 89 240-353 26-114 (121)
235 2kat_A Uncharacterized protein 96.6 0.0072 2.5E-07 46.9 8.2 67 277-357 20-86 (115)
236 2yhc_A BAMD, UPF0169 lipoprote 96.6 0.02 6.9E-07 50.3 12.1 170 188-391 9-209 (225)
237 3qou_A Protein YBBN; thioredox 96.6 0.0034 1.2E-07 58.0 7.2 99 277-391 118-244 (287)
238 2yhc_A BAMD, UPF0169 lipoprote 96.5 0.008 2.7E-07 53.0 8.6 129 240-391 13-172 (225)
239 3rjv_A Putative SEL1 repeat pr 96.5 0.002 6.7E-08 56.7 4.4 53 237-303 24-80 (212)
240 3mkr_A Coatomer subunit epsilo 96.3 0.003 1E-07 58.7 4.7 120 237-392 107-226 (291)
241 2r5s_A Uncharacterized protein 96.3 0.0045 1.6E-07 52.3 5.2 97 279-391 9-133 (176)
242 2e2e_A Formate-dependent nitri 96.2 0.031 1.1E-06 46.7 10.2 95 233-352 46-143 (177)
243 3rjv_A Putative SEL1 repeat pr 96.0 0.0072 2.5E-07 53.0 5.5 58 277-351 19-80 (212)
244 2l6j_A TPR repeat-containing p 96.0 0.0076 2.6E-07 45.9 4.7 61 324-392 4-64 (111)
245 1xi4_A Clathrin heavy chain; a 95.9 0.015 5E-07 64.9 8.4 132 239-392 1057-1221(1630)
246 3ma5_A Tetratricopeptide repea 95.9 0.0074 2.5E-07 46.1 4.2 61 324-392 7-67 (100)
247 2kat_A Uncharacterized protein 95.9 0.019 6.4E-07 44.5 6.7 61 324-392 19-79 (115)
248 2ond_A Cleavage stimulation fa 95.6 0.24 8.3E-06 45.5 14.4 119 248-391 33-159 (308)
249 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0044 1.5E-07 48.1 1.6 31 88-119 2-35 (101)
250 1na3_A Designed protein CTPR2; 95.4 0.022 7.5E-07 41.5 5.0 62 323-392 8-69 (91)
251 2xm6_A Protein corresponding t 95.2 0.036 1.2E-06 54.8 7.7 48 244-304 92-143 (490)
252 1zu2_A Mitochondrial import re 95.0 0.79 2.7E-05 38.5 14.2 80 277-369 37-130 (158)
253 3k1l_B Fancl; UBC, ring, RWD, 94.7 0.0045 1.5E-07 58.4 -0.6 45 88-132 307-373 (381)
254 1xi4_A Clathrin heavy chain; a 94.6 0.084 2.9E-06 59.0 9.1 169 190-392 1056-1247(1630)
255 1klx_A Cysteine rich protein B 94.5 0.059 2E-06 43.8 5.8 85 282-392 31-123 (138)
256 2ond_A Cleavage stimulation fa 94.4 0.64 2.2E-05 42.6 13.5 139 238-391 106-266 (308)
257 1vyx_A ORF K3, K3RING; zinc-bi 94.3 0.024 8.3E-07 39.6 2.6 43 88-131 5-58 (60)
258 4f3v_A ESX-1 secretion system 94.3 0.09 3.1E-06 48.7 7.2 128 190-352 109-236 (282)
259 2kc7_A BFR218_protein; tetratr 94.0 0.04 1.4E-06 41.1 3.6 56 329-392 5-61 (99)
260 2xm6_A Protein corresponding t 93.8 0.17 5.8E-06 49.9 8.7 48 244-304 56-107 (490)
261 3e4b_A ALGK; tetratricopeptide 93.7 0.13 4.5E-06 50.6 7.6 85 190-304 10-102 (452)
262 2v5f_A Prolyl 4-hydroxylase su 93.4 0.064 2.2E-06 41.3 3.8 63 328-392 9-72 (104)
263 4f3v_A ESX-1 secretion system 92.9 0.24 8.3E-06 45.8 7.6 97 278-392 137-234 (282)
264 1klx_A Cysteine rich protein B 92.1 0.56 1.9E-05 37.7 8.1 88 237-353 31-126 (138)
265 3ffl_A Anaphase-promoting comp 91.9 3.6 0.00012 34.7 12.9 101 243-346 32-144 (167)
266 3ffl_A Anaphase-promoting comp 90.8 2.1 7.3E-05 36.1 10.3 96 288-390 32-146 (167)
267 3m62_A Ubiquitin conjugation f 90.2 0.22 7.4E-06 53.3 4.6 64 88-152 890-960 (968)
268 2ooe_A Cleavage stimulation fa 89.6 3.8 0.00013 40.4 13.2 88 289-391 292-381 (530)
269 2ooe_A Cleavage stimulation fa 88.4 10 0.00034 37.3 15.3 53 242-304 332-384 (530)
270 3bee_A Putative YFRE protein; 88.1 1.2 4.2E-05 33.4 6.4 60 278-351 8-70 (93)
271 3nw0_A Non-structural maintena 87.0 0.28 9.6E-06 44.2 2.5 44 89-132 180-229 (238)
272 3e4b_A ALGK; tetratricopeptide 86.9 0.88 3E-05 44.5 6.3 104 278-392 178-313 (452)
273 2csv_A Tripartite motif protei 86.4 0.04 1.4E-06 39.8 -2.9 40 226-266 20-69 (72)
274 1b89_A Protein (clathrin heavy 85.9 4 0.00014 40.1 10.2 97 233-351 124-234 (449)
275 3txn_A 26S proteasome regulato 85.2 2.1 7.3E-05 41.3 7.9 102 278-389 101-204 (394)
276 2w2u_A Hypothetical P60 katani 84.6 5.1 0.00017 29.5 8.0 36 322-357 17-52 (83)
277 2cpt_A SKD1 protein, vacuolar 84.6 2.6 8.9E-05 33.3 6.8 41 320-360 14-55 (117)
278 3ly7_A Transcriptional activat 83.9 2.7 9.2E-05 40.3 7.8 61 278-353 279-339 (372)
279 2v6y_A AAA family ATPase, P60 82.1 7.6 0.00026 28.5 8.1 36 322-357 9-44 (83)
280 3i2d_A E3 SUMO-protein ligase 79.3 1.1 3.8E-05 42.7 3.2 57 89-145 249-315 (371)
281 1pc2_A Mitochondria fission pr 78.3 15 0.00053 30.2 9.6 29 324-352 71-99 (152)
282 3mkq_A Coatomer beta'-subunit; 77.4 25 0.00085 36.1 13.3 26 277-302 682-707 (814)
283 1wfd_A Hypothetical protein 15 77.4 7 0.00024 29.4 6.7 37 321-357 12-48 (93)
284 1dce_A Protein (RAB geranylger 76.3 4.1 0.00014 41.3 6.6 93 278-392 109-218 (567)
285 3bee_A Putative YFRE protein; 76.0 2.4 8.2E-05 31.7 3.7 58 326-391 8-68 (93)
286 4fo9_A E3 SUMO-protein ligase 75.4 1.6 5.6E-05 41.4 3.1 57 89-145 215-281 (360)
287 2ffw_A Midline-1; B-BOX, ring 74.8 0.77 2.6E-05 33.6 0.6 32 171-218 28-66 (78)
288 1b89_A Protein (clathrin heavy 74.1 1.6 5.4E-05 43.0 2.8 54 278-353 124-177 (449)
289 4a5x_A MITD1, MIT domain-conta 73.1 8.9 0.00031 28.4 6.1 34 324-357 16-49 (86)
290 1dce_A Protein (RAB geranylger 71.9 6.5 0.00022 39.7 6.9 79 299-392 89-170 (567)
291 2v6x_A Vacuolar protein sortin 71.3 10 0.00035 27.8 6.1 37 321-357 10-46 (85)
292 3mv2_B Coatomer subunit epsilo 70.6 10 0.00035 35.2 7.4 62 278-351 102-163 (310)
293 3txn_A 26S proteasome regulato 69.7 22 0.00075 34.2 9.7 105 237-354 105-211 (394)
294 2o8p_A 14-3-3 domain containin 69.4 40 0.0014 29.7 10.5 74 279-357 123-201 (227)
295 2rpa_A Katanin P60 ATPase-cont 68.9 9.3 0.00032 27.8 5.2 28 330-357 18-45 (78)
296 2d8u_A Ubiquitin ligase TRIM63 68.0 0.027 9.2E-07 39.7 -8.6 40 226-265 10-60 (64)
297 2cs3_A Protein C14ORF4, MY039 65.9 9.1 0.00031 27.9 4.5 32 88-120 14-49 (93)
298 2ko5_A Ring finger protein Z; 63.8 14 0.00049 27.7 5.4 42 88-132 27-73 (99)
299 3u64_A Protein TP_0956; tetrat 63.2 26 0.00088 32.3 8.3 63 277-352 200-268 (301)
300 3dss_A Geranylgeranyl transfer 56.9 67 0.0023 29.9 10.3 92 278-391 110-218 (331)
301 3dra_A Protein farnesyltransfe 56.8 39 0.0013 31.0 8.6 28 277-304 68-97 (306)
302 3mv2_B Coatomer subunit epsilo 55.8 91 0.0031 28.7 10.9 38 333-370 220-261 (310)
303 2jne_A Hypothetical protein YF 54.0 1.2 4.2E-05 33.7 -1.9 40 89-133 32-74 (101)
304 2did_A Tripartite motif protei 53.7 0.17 5.9E-06 34.0 -6.2 29 226-254 10-48 (53)
305 2cpt_A SKD1 protein, vacuolar 53.1 79 0.0027 24.6 9.0 28 287-314 29-56 (117)
306 1fre_A Nuclear factor XNF7; zi 52.8 0.42 1.4E-05 30.2 -4.1 14 226-239 5-18 (42)
307 1o9d_A 14-3-3-like protein C; 50.1 75 0.0026 28.5 8.9 74 293-371 152-231 (260)
308 2dja_A Midline-2; tripartite m 48.9 0.051 1.7E-06 40.5 -10.5 44 226-269 20-74 (84)
309 1deq_A Fibrinogen (alpha chain 46.9 54 0.0018 31.0 7.5 43 266-308 81-123 (390)
310 3q7a_A Farnesyltransferase alp 46.5 43 0.0015 31.5 7.1 84 278-383 90-176 (349)
311 2ff4_A Probable regulatory pro 46.5 8.1 0.00028 37.0 2.1 94 289-391 128-230 (388)
312 3dra_A Protein farnesyltransfe 44.9 88 0.003 28.6 8.9 29 324-352 67-97 (306)
313 2yvr_A Transcription intermedi 44.7 0.36 1.2E-05 31.8 -5.6 28 226-254 8-46 (50)
314 3q7a_A Farnesyltransferase alp 44.4 93 0.0032 29.2 9.1 13 327-339 162-174 (349)
315 1ya0_A SMG-7 transcript varian 42.3 58 0.002 32.2 7.6 67 272-352 148-214 (497)
316 1z60_A TFIIH basal transcripti 41.1 11 0.00036 25.9 1.4 37 90-126 16-58 (59)
317 2yrg_A Tripartite motif-contai 40.3 0.87 3E-05 31.3 -4.3 28 226-253 16-53 (59)
318 3rau_A Tyrosine-protein phosph 38.9 73 0.0025 30.0 7.5 88 270-357 111-226 (363)
319 3u64_A Protein TP_0956; tetrat 38.9 85 0.0029 28.8 7.5 56 295-355 175-235 (301)
320 2egm_A Tripartite motif-contai 38.8 0.66 2.3E-05 31.7 -5.1 14 226-239 20-33 (57)
321 1vh6_A Flagellar protein FLIS; 38.7 53 0.0018 26.7 5.6 51 329-382 38-90 (145)
322 2cup_A Skeletal muscle LIM-pro 38.4 15 0.00053 27.3 2.2 43 89-131 33-77 (101)
323 3efz_A 14-3-3 protein; 14-3-3, 38.1 79 0.0027 28.5 7.1 59 292-353 168-226 (268)
324 3mkq_A Coatomer beta'-subunit; 37.0 1.5E+02 0.0052 30.0 10.3 24 234-257 684-707 (814)
325 3ghg_A Fibrinogen alpha chain; 36.9 78 0.0027 31.3 7.2 10 376-385 178-187 (562)
326 2xqn_T Testin, TESS; metal-bin 36.8 16 0.00053 28.6 2.0 44 89-132 30-75 (126)
327 3iqc_A FLIS, flagellar protein 36.2 1.1E+02 0.0036 24.4 6.9 50 331-382 43-95 (131)
328 2jrp_A Putative cytoplasmic pr 35.2 4.2 0.00014 29.8 -1.5 38 90-132 3-43 (81)
329 1ya0_A SMG-7 transcript varian 35.2 53 0.0018 32.5 6.0 44 323-372 151-194 (497)
330 3ddt_A E3 ubiquitin-protein li 34.8 0.83 2.8E-05 29.8 -5.0 14 226-239 8-22 (48)
331 2lri_C Autoimmune regulator; Z 34.4 38 0.0013 23.5 3.5 39 90-129 13-59 (66)
332 2jmo_A Parkin; IBR, E3 ligase, 34.3 6.4 0.00022 28.7 -0.7 21 107-128 55-75 (80)
333 1pc2_A Mitochondria fission pr 33.4 57 0.0019 26.8 4.9 49 248-305 52-100 (152)
334 2lbm_A Transcriptional regulat 33.3 35 0.0012 27.8 3.6 39 89-128 63-116 (142)
335 4b4t_R RPN7, 26S proteasome re 33.3 18 0.00063 34.9 2.3 68 278-356 133-200 (429)
336 1orj_A Flagellar protein FLIS; 33.1 1.3E+02 0.0045 23.8 7.0 47 335-383 40-93 (130)
337 1wil_A KIAA1045 protein; ring 33.0 36 0.0012 25.0 3.2 31 88-120 14-47 (89)
338 3ly7_A Transcriptional activat 31.4 98 0.0034 29.3 6.9 54 330-392 283-336 (372)
339 2w2u_A Hypothetical P60 katani 30.3 1.5E+02 0.0053 21.3 9.1 29 287-315 30-58 (83)
340 2ff4_A Probable regulatory pro 30.3 3.2E+02 0.011 25.5 10.5 71 278-362 173-244 (388)
341 2v6y_A AAA family ATPase, P60 29.8 1.5E+02 0.0051 21.3 6.3 30 286-315 21-50 (83)
342 3vth_A Hydrogenase maturation 29.4 20 0.00067 37.7 1.8 44 88-131 110-194 (761)
343 2br9_A 14-3-3E, 14-3-3 protein 29.3 1.7E+02 0.0058 25.8 7.7 55 293-352 147-201 (234)
344 3mjh_B Early endosome antigen 29.2 11 0.00036 22.8 -0.2 12 89-100 5-16 (34)
345 3ttc_A HYPF, transcriptional r 28.8 14 0.00047 38.1 0.5 24 334-357 327-352 (657)
346 1y8m_A FIS1; mitochondria, unk 28.7 1.6E+02 0.0054 23.9 6.8 45 301-351 60-104 (144)
347 1nzn_A CGI-135 protein, fissio 28.4 1.6E+02 0.0054 23.2 6.6 46 301-351 56-101 (126)
348 2d8v_A Zinc finger FYVE domain 27.8 10 0.00035 26.5 -0.4 30 90-121 9-39 (67)
349 4g9i_A Hydrogenase maturation 27.5 21 0.00073 37.5 1.7 44 88-131 105-189 (772)
350 1weo_A Cellulose synthase, cat 27.4 41 0.0014 25.0 2.7 43 90-132 17-70 (93)
351 2npm_A 14-3-3 domain containin 27.1 2E+02 0.0067 25.8 7.8 54 293-352 173-226 (260)
352 1orj_A Flagellar protein FLIS; 26.6 2.4E+02 0.0081 22.3 8.7 67 289-357 42-113 (130)
353 2ct7_A Ring finger protein 31; 26.4 7.3 0.00025 28.8 -1.6 30 91-120 27-61 (86)
354 3dss_A Geranylgeranyl transfer 26.0 3.9E+02 0.013 24.5 13.4 82 295-391 86-170 (331)
355 2gmg_A Hypothetical protein PF 25.8 11 0.00037 29.0 -0.7 26 100-129 65-93 (105)
356 3iqu_A 14-3-3 protein sigma; s 25.3 2.4E+02 0.0083 24.8 7.9 55 292-351 149-203 (236)
357 1wd2_A Ariadne-1 protein homol 25.2 9.5 0.00032 26.2 -1.0 31 90-120 7-44 (60)
358 4g26_A Pentatricopeptide repea 24.7 3.4E+02 0.012 26.4 9.9 60 278-350 107-166 (501)
359 2a9u_A Ubiquitin carboxyl-term 24.2 1.1E+02 0.0039 24.7 5.2 43 322-364 40-82 (144)
360 2wb7_A PT26-6P; extra chromoso 23.7 2.4E+02 0.0083 27.7 8.1 20 292-311 448-467 (526)
361 1vh6_A Flagellar protein FLIS; 23.2 2.2E+02 0.0075 22.9 6.8 82 272-357 27-113 (145)
362 1joc_A EEA1, early endosomal a 23.0 19 0.00064 28.6 0.2 31 89-119 69-102 (125)
363 4ayb_P DNA-directed RNA polyme 22.9 11 0.00036 24.5 -1.0 28 104-131 5-34 (48)
364 1zb1_A BRO1 protein; AIP1, BRO 22.8 2.4E+02 0.0083 26.6 8.1 84 274-357 121-232 (392)
365 3mkq_B Coatomer subunit alpha; 22.7 1.6E+02 0.0055 24.7 6.0 91 193-302 15-115 (177)
366 3uzd_A 14-3-3 protein gamma; s 22.5 2.7E+02 0.0091 24.7 7.7 55 293-352 148-202 (248)
367 4b4t_P 26S proteasome regulato 21.8 2E+02 0.0068 27.7 7.4 68 277-352 138-205 (445)
368 3ubw_A 14-3-3E, 14-3-3 protein 21.8 2.6E+02 0.009 25.0 7.5 55 293-352 173-227 (261)
369 4a5x_A MITD1, MIT domain-conta 21.6 2.3E+02 0.008 20.4 9.4 29 287-315 27-55 (86)
370 2pv0_B DNA (cytosine-5)-methyl 21.5 61 0.0021 30.9 3.4 40 89-129 93-148 (386)
371 2o35_A Hypothetical protein DU 21.5 22 0.00077 26.9 0.3 10 111-120 42-51 (105)
372 2ymb_A MITD1, MIT domain-conta 21.4 20 0.00068 32.3 0.0 34 324-357 23-56 (257)
373 3fyb_A Protein of unknown func 21.4 23 0.00077 26.8 0.3 10 111-120 41-50 (104)
374 3ghg_C Fibrinogen gamma chain; 21.3 3.4E+02 0.012 26.0 8.6 13 227-239 8-20 (411)
375 3o48_A Mitochondria fission 1 21.1 2.1E+02 0.0073 22.8 6.1 36 324-365 78-113 (134)
376 6rxn_A Rubredoxin; electron tr 21.1 43 0.0015 21.6 1.6 36 89-129 4-39 (46)
377 2dl1_A Spartin; SPG20, MIT, st 20.6 2E+02 0.0068 22.4 5.6 21 337-357 35-55 (116)
378 1m1j_A Fibrinogen alpha subuni 20.1 5.7E+02 0.019 24.8 9.7 39 270-308 83-121 (491)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=101.93 Aligned_cols=62 Identities=27% Similarity=0.676 Sum_probs=55.4
Q ss_pred CceeccccccccccCceecc-cCcHhHHHhHHhcC------CCCCCCcCCcc---cchhhHHHHHHHHHHhhh
Q 016262 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIEK---IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~~---~~~n~~l~~~~~~~~~~~ 150 (392)
+.+.|+||++++. +|++++ |||+||..||..|+ .||.||..+.. +.+|..+.++++.++...
T Consensus 12 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 12 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp TTTEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred cCCCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 5799999999998 999999 99999999999884 69999999742 899999999999998653
No 2
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.30 E-value=1.2e-11 Score=125.17 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=123.5
Q ss_pred ccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh
Q 016262 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL 321 (392)
Q Consensus 242 ~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~ 321 (392)
..+|++.+|+.+++++++...++-+.. +..+..++++|+.++..+|+|++|+.+|+++|++++..+.....
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~---Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------ 390 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADT---NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA------ 390 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH------
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH------
Confidence 368889999999999988876654422 34567899999999999999999999999999999998766543
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++.+++|||.++..+|++++|+.+|++|++|++.. ..||..+.++.++.. .+..++.|..+..+|+.|
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~--~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQ--TEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999998 889999999988888 888999999999988764
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=1.7e-12 Score=97.99 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=55.0
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||+.||.+|+ .||.|+..+.. +.+|..|+++++.+...
T Consensus 7 ~~~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 7 EYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp SSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred ccCCCCCcccccc-CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 5799999999988 99999999999999999984 39999999875 88999999999999753
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=3.3e-12 Score=98.12 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=56.6
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHHHHhhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~~ 150 (392)
+.|.||||++++. +|++++|||+||+.||..|+ .||.|+..+.. +.+|..|+++++.+....
T Consensus 13 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 13 DEFRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hheECcccCchhc-CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 5799999999999 99999999999999999995 59999999876 899999999999998653
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.23 E-value=4.6e-12 Score=100.27 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=56.4
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcCC----CCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~----CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
+.|.||||++++. +|++++|||+||+.||..|+. ||.|+.++.. +.+|..|+++++.+...
T Consensus 28 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 28 DEFRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp TTTBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred HhhCCcCccCccc-CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 5799999999999 999999999999999999974 9999999886 99999999999999864
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.22 E-value=2e-11 Score=96.22 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=56.9
Q ss_pred CceeccccccccccCceecccC-cHhHHHhHHhcCC----CCCCCcCCcc--cchhhHHHHHHHHHHhhh
Q 016262 88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~~----CP~C~~~~~~--~~~n~~l~~~~~~~~~~~ 150 (392)
++|.||||++++. +|++++|| |+||+.||..|+. ||.|+.++.. +.+|..|+++|+.+....
T Consensus 21 ~~~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 21 DEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp TTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred HhcCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 5799999999999 99999999 9999999999974 9999999886 899999999999998653
No 7
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=5.2e-12 Score=103.07 Aligned_cols=63 Identities=22% Similarity=0.570 Sum_probs=56.0
Q ss_pred CceeccccccccccCceec-ccCcHhHHHhHHhcC--CCCCCCcCCcc--cchhhHHHHHHHHHHhhhh
Q 016262 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK--DCPLCGADIEK--IEADTTLQDVVDRFIEGHA 151 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~--~CP~C~~~~~~--~~~n~~l~~~~~~~~~~~~ 151 (392)
+.+.|+||++++. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.++++.+.....
T Consensus 21 ~~~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 21 KLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 4799999999998 89998 999999999999996 49999999865 8999999999998876543
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.17 E-value=8e-12 Score=103.01 Aligned_cols=61 Identities=33% Similarity=0.805 Sum_probs=55.1
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc---cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.++++.+..+
T Consensus 51 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 51 ETFQCICCQELVF-RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred cCCCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4689999999988 99999999999999999884 69999999976 89999999999998754
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=95.81 Aligned_cols=64 Identities=27% Similarity=0.647 Sum_probs=56.5
Q ss_pred CceeccccccccccCceec-ccCcHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHHHHhhhhh
Q 016262 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR 152 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~~~~ 152 (392)
+.+.|+||++.+. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.++++.+....+.
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 21 DLLRCGICFEYFN-IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCCCcccCChhhC-CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence 4689999999988 88887 899999999999984 49999999886 89999999999999876544
No 10
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=2.5e-11 Score=101.93 Aligned_cols=59 Identities=25% Similarity=0.796 Sum_probs=49.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcccchhhHHHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~~~~~~~ 147 (392)
+++.|+||++.+. +|++++|||+||..||..|+ .||.||..+.....+..+..++..+.
T Consensus 52 ~~~~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 52 NELQCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMV 114 (138)
T ss_dssp HHSBCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred ccCCCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence 3578999999988 99999999999999999995 49999999987555666666666554
No 11
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.10 E-value=5.3e-10 Score=111.43 Aligned_cols=120 Identities=14% Similarity=0.054 Sum_probs=102.5
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++.+|+.+++++++...++-+.. +..+..++++|+.++..+|+|++|+.+|+++|++++..+..... +
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~---Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------~ 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDS---NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL------N 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH------H
T ss_pred hccCHHHHHHHHHHHHHHhhCccChh---chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh------H
Confidence 34677889999999987776643322 34567899999999999999999999999999999998766543 8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhhc
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCW 371 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~ 371 (392)
++.+++|||.++..+|++++|+.+|++|++|++.. ..||..+.+.+++.
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 89999999999999999999999999999999998 88888887777654
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=2.8e-11 Score=95.83 Aligned_cols=61 Identities=25% Similarity=0.551 Sum_probs=53.3
Q ss_pred CceeccccccccccCcee-cccCcHhHHHhHHhc-----CCCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRF-----KDCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||++++. +|++ ++|||+||..||..| ..||.||..+.. +..+..+.++++.+...
T Consensus 21 ~~~~C~IC~~~~~-~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 21 EVFRCFICMEKLR-DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCccCCcccc-CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 4789999999998 8888 999999999999998 359999999876 78888888888887654
No 13
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.2e-11 Score=93.70 Aligned_cols=62 Identities=23% Similarity=0.458 Sum_probs=54.0
Q ss_pred CceeccccccccccCceecc-cCcHhHHHhHHhcC----------CCCC--CCcC-Ccc--cchhhHHHHHHHHHHhhh
Q 016262 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK----------DCPL--CGAD-IEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~----------~CP~--C~~~-~~~--~~~n~~l~~~~~~~~~~~ 150 (392)
..|.||||+++|. +|++++ |||+||+.||..|+ .||. |+.. +.. +.+|..|.++|..++...
T Consensus 6 ~~~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 6 SGFTCPITKEEMK-KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp SCCBCTTTCSBCS-SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred cEeECcCcCchhc-CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 5689999999999 999996 99999999999984 5999 8865 443 999999999999998653
No 14
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=5.5e-11 Score=101.23 Aligned_cols=60 Identities=32% Similarity=0.733 Sum_probs=54.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc---cchhhHHHHHHHHHHh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~~~~~~~ 148 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.+|..++++++.+..
T Consensus 77 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 77 QSFMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred cCCEeecCChhhc-CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 3589999999988 99999999999999999983 59999999885 7899999999999864
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=7e-11 Score=94.87 Aligned_cols=61 Identities=36% Similarity=0.892 Sum_probs=53.3
Q ss_pred CceeccccccccccCceec-ccCcHhHHHhHHhcC----CCCCCCcCCcc------cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK------IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~------~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||++++. +|+++ +|||+||..||..|+ .||.|+..+.. +.+|..+.++++.+...
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 14 PHLMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp GGTBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred CcCCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 5789999999998 88887 999999999999994 59999998874 67899999999988643
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.6e-10 Score=87.70 Aligned_cols=50 Identities=22% Similarity=0.624 Sum_probs=43.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc-cchhhH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTT 138 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~ 138 (392)
..+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +.+|..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 68 (81)
T 2csy_A 14 IPFRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE 68 (81)
T ss_dssp CCSBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHH
T ss_pred CCCCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHH
Confidence 4689999999988 89999999999999999984 49999999876 666643
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.02 E-value=2.3e-11 Score=91.79 Aligned_cols=52 Identities=33% Similarity=0.761 Sum_probs=44.0
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----------CCCCCCcCCcc--cchhhHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGADIEK--IEADTTLQ 140 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~--~~~n~~l~ 140 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +.+|..+.
T Consensus 11 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 11 EEVTCPICLELLT-EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCEETTTTEECS-SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred cCCCCcCCCcccC-CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 5689999999988 89999999999999999873 39999998875 66665544
No 18
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=3.3e-09 Score=96.33 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=139.8
Q ss_pred HhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHH
Q 016262 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~ 273 (392)
...|++++|...+..+.+.+...+... . +.....+..++..+...|++..|+.+++++.+...++.+.. ..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ 82 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHD--H----PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HP 82 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSS--S----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---ch
Confidence 345677778888876666555443211 1 23344556667777788999999999999987776653322 23
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.....+..++.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+.+|++++++
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999887654322 155778899999999999999999999999999
Q ss_pred HHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 354 LESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 354 le~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+.. ..+|....+...++. ++..++++.+|+.+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLAS--CYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 9887 456666777778887 888999999999998764
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=93.74 Aligned_cols=61 Identities=23% Similarity=0.595 Sum_probs=52.9
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc---------cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---------IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---------~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +..|..+.+++..+...
T Consensus 14 ~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 14 SECQCGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp HHHBCTTTCSBCS-SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCccCCcccC-ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 5799999999998 99999999999999999985 49999998863 56788888888887644
No 20
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.97 E-value=1.9e-10 Score=100.00 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.7
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
..|.||||++++. +|++++|||+||+.||..|+ .||.|+.++.. +.+|..|.++++.+...
T Consensus 105 ~~f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 105 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred HhhcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 5799999999999 99999999999999999984 39999999876 99999999999999754
No 21
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.96 E-value=6e-09 Score=100.86 Aligned_cols=182 Identities=10% Similarity=-0.020 Sum_probs=144.3
Q ss_pred HHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc
Q 016262 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.++-.+..|++++|...+..+...... .++ . ......+..++..+..+|++..|+.+++++.+...+...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~-~---~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIF----VKD-R---IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG----CCC-H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh----CCC-H---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--
Confidence 455678889999999888754322111 111 1 223455666777777899999999999999988888754
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016262 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~ 348 (392)
....+...+.++|.++..+|++++|+.+|++++++.+... ....++..+.++|.++..+|++++|+.+|+
T Consensus 179 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 179 --YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp --THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2345678899999999999999999999999999877631 123567889999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 349 EAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 349 ~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++++.+.....|..+.....++. ++..++++.+|+.+|++|
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQ--IHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 999999988665677888888888 899999999999999864
No 22
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=2.9e-10 Score=106.36 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=55.7
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
..+.||||++++. +|++++|||+||+.||.+|+ .||.|+.++.. +.+|..|.++|+.+...
T Consensus 207 ~~~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 207 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp STTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred cccCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 5689999999999 99999999999999999984 39999999986 89999999999999854
No 23
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.95 E-value=2.8e-09 Score=106.18 Aligned_cols=126 Identities=14% Similarity=-0.055 Sum_probs=102.5
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
.+|++.+|+.+++.+++...++-+ .-+..+..++++|+.++..+|+|++|+.+|+++|++++..+..... +
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg---~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~ 369 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLP---DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP------V 369 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCC---TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH------H
T ss_pred hhccHHHHHHHHHHHHHhccCcCC---ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh------H
Confidence 456666777777666555443322 2244577899999999999999999999999999999998765443 8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQ 379 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l 379 (392)
++.++++||.++..+|++++|+.+|++|++|++.. ..||..+.+++++.. ....+
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~--~~~e~ 426 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE--CDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--HHHHH
Confidence 89999999999999999999999999999999998 888988888877776 54444
No 24
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.95 E-value=1.3e-09 Score=108.61 Aligned_cols=116 Identities=10% Similarity=-0.078 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016262 269 LEIIHTLSVSLNKIGDLKY--YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~--~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~ 346 (392)
.+++..+..+...+..... ..|+|++|+..|+++|++++..+..... +++.++++||.++..+|++++|+.+
T Consensus 289 e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~ 362 (433)
T 3qww_A 289 EAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV------YMLHMMYQAMGVCLYMQDWEGALKY 362 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch------HHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 3345555555555655543 3589999999999999999886654432 7899999999999999999999999
Q ss_pred HHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 347 FQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 347 ~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
|++++++++.+ ..||..+..+++++. +|..+++|.+|+++|++|
T Consensus 363 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~--~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 363 GQKIIKPYSKHYPVYSLNVASMWLKLGR--LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHH--HHHhccCHHHHHHHHHHH
Confidence 99999999998 899999999999999 999999999999999986
No 25
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=3.4e-09 Score=100.09 Aligned_cols=176 Identities=14% Similarity=0.071 Sum_probs=126.8
Q ss_pred HHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHH
Q 016262 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
-...|++++|...+..+.+..... . .. ......+..++.++..+|++..|+.+++++.+...+++. .
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~----~-~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~ 112 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANN----R-SL---FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----P 112 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT----T-CH---HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----H
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHc----C-CH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----H
Confidence 345688888888776544332210 1 11 112334555666776789999999999999988877654 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
......+.++|.++.. |++++|+.+|++++++..... .....+..+.++|.++..+|++++|+.+|+++++
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456789999999998 999999999999999877521 1124577889999999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.......+........++. ++..++++.+|+.+|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVL--VQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 98877443333333444444 555668888888888763
No 26
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4.5e-10 Score=91.60 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=49.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc--cchhhHHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~~~~~ 146 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.++..+..++..+
T Consensus 17 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCcCChhhc-CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 5789999999988 89999999999999999983 69999998887 66777776666554
No 27
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=1.1e-09 Score=103.51 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=130.0
Q ss_pred HHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHH
Q 016262 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
++..|++++|...+......+...+......... -...+...+.++...|++..|+..+..+.+...++.. .
T Consensus 1 ~~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~---A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 72 (307)
T 2ifu_A 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDS---AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----L 72 (307)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----H
T ss_pred CCccchHHHHHHHHHHHHHHccccccCCCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----H
Confidence 3567889999888876654433111000011110 0111112233455678888999999988888877754 3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
......+.+++.++..+|++++|+.+|++++++.+... .....+..+.++|.++.. |++++|+.+|+++++
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999876421 122457889999999999 999999999999999
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.+........+....+++. ++..++++.+|+.+|++|
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 144 VFENEERLRQAAELIGKASR--LLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 99887444445567777888 888999999999999864
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=8.2e-10 Score=81.83 Aligned_cols=44 Identities=32% Similarity=0.831 Sum_probs=39.6
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||.||..||..|+ .||.||..+..
T Consensus 19 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 5689999999988 89999999999999999996 49999987754
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.6e-10 Score=93.21 Aligned_cols=61 Identities=33% Similarity=0.786 Sum_probs=50.8
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-------CCCCCCcCCcc--cchhhHHHHHHHHHHhh
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK--IEADTTLQDVVDRFIEG 149 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~--~~~n~~l~~~~~~~~~~ 149 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+.. +..|..+.++++.+...
T Consensus 20 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 20 KILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCCcccChhhc-CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3578999999988 89999999999999999883 59999998876 66676667777766643
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=3.9e-10 Score=97.52 Aligned_cols=60 Identities=25% Similarity=0.657 Sum_probs=52.2
Q ss_pred CceeccccccccccCceec-ccCcHhHHHhHHhcC-----CCCCCCcCCcc---cchhhHHHHHHHHHHh
Q 016262 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE 148 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~~~~~~~ 148 (392)
..+.|+||++++. +|+++ +|||+||..||..|+ .||.||..+.. +.+|..+.+++..+..
T Consensus 53 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDMLK-NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHhh-CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4689999999999 78776 999999999999983 39999998854 8899999999998864
No 31
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.89 E-value=2.6e-09 Score=108.04 Aligned_cols=114 Identities=10% Similarity=-0.044 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016262 271 IIHTLSVSLNKIGDL--KYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 271 ~~~~l~~~l~~lg~l--~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~ 348 (392)
+...++.....++.. +..+|++++|+..|+++|++++..+..... +++.++++||.++..+|++++|+.+|+
T Consensus 302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp------~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL------YVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444444333 346799999999999999999887654432 789999999999999999999999999
Q ss_pred HHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 349 EAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 349 ~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++++.+.+ ..||..+..+++++. +|..+++|.+|+++|++|
T Consensus 376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~--~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 376 RMVDGYMKLYHHNNAQLGMAVMRAGL--TNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 999999998 999999999999999 999999999999999986
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.89 E-value=2.6e-10 Score=86.98 Aligned_cols=52 Identities=27% Similarity=0.706 Sum_probs=43.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc----------CCCCCCCcCCcc--cchhhHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQ 140 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~ 140 (392)
+.+.|+||++.+. +|++++|||+||..||..| ..||.||..+.. +.+|..+.
T Consensus 18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 18 EEVTCPICLELLK-EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTTSCTTTCSCCS-SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred cCCCCcCCChhhC-cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 5689999999988 8999999999999999886 249999998875 56665543
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.88 E-value=4e-08 Score=90.67 Aligned_cols=191 Identities=16% Similarity=0.151 Sum_probs=145.1
Q ss_pred hHhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhC
Q 016262 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L 264 (392)
.+...+.-.+..|++++|...+..+.......... .. +.....+..++.++...|++..|+.+++.+.....++
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH--DH----PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS--SS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45555666788999999999998665544332210 11 2233455566667768899999999999887776654
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHH
Q 016262 265 PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 265 ~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~ 344 (392)
.+.. ..........++.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+
T Consensus 103 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 103 LGKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH------PDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HCTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred hCCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2211 2345678899999999999999999999999998877643322 255778889999999999999999
Q ss_pred HHHHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 345 DGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 345 ~~~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+|++++++.+.. ..++....+...++. ++..++++.+|+.+|++|
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLAS--CYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 9999999999887 556666777777777 888999999999998764
No 34
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=2.7e-10 Score=80.12 Aligned_cols=44 Identities=36% Similarity=0.792 Sum_probs=39.0
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc-CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||+||..||..| ..||.||..+..
T Consensus 5 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccC-CeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 5689999999988 8999999999999999886 369999987654
No 35
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.88 E-value=5.8e-09 Score=101.01 Aligned_cols=183 Identities=13% Similarity=0.035 Sum_probs=141.3
Q ss_pred hHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCC
Q 016262 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
+-.++-.+..|++++|...+..+...... ..+ . +.....+..++.++..+|++..|+.+++++.+.......
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~-~---~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPF----VSD-D---IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGG----CCC-H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhh----CCC-h---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 44455678899999999988754322111 111 1 234556667777777899999999999999888877644
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016262 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 267 ~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~ 346 (392)
....+...+.++|.++..+|++++|+.+|++++++.+.... ...++..+.++|.++..+|++++|+.+
T Consensus 177 ----~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 177 ----YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 13356788999999999999999999999999998765311 125678899999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 347 FQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 347 ~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
|++++++.+..... ..+.....++. ++..++++.+|+.+|++|
T Consensus 245 ~~~al~~~~~~~~~-~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 245 FQKAAKVSREKVPD-LLPKVLFGLSW--TLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHCGG-GHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCh-hHHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 99999998887332 33667777777 888999999999998864
No 36
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.88 E-value=4.7e-10 Score=83.56 Aligned_cols=43 Identities=30% Similarity=0.821 Sum_probs=38.5
Q ss_pred CceeccccccccccCceecc-cCcHhHHHhHHhcC------CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~ 131 (392)
+.+.|+||++++. +|++++ |||+||..||..|+ .||.||..+.
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 5689999999998 899999 99999999999983 5999998654
No 37
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.1e-09 Score=81.13 Aligned_cols=44 Identities=32% Similarity=0.810 Sum_probs=39.0
Q ss_pred CceeccccccccccCceec-ccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+++ +|||+||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI-DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS-SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH-CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 5689999999998 78876 999999999999984 59999998765
No 38
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.87 E-value=9.3e-09 Score=89.37 Aligned_cols=172 Identities=17% Similarity=0.122 Sum_probs=126.0
Q ss_pred HHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHH
Q 016262 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 193 ~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
++..|++++|...+.... ..+. .....+..++..+...|++..++.+++++......+.. .
T Consensus 2 ~~~~g~~~~A~~~~~~~~--------~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~ 62 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL--------AHPA------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----H 62 (203)
T ss_dssp -----CHHHHHHHHHHHH--------TSTT------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----H
T ss_pred ccccccHHHHHHHHHHhc--------CChH------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----c
Confidence 356788888888433221 1110 12334555666666789999999999999888887754 4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
......+.+++.++...|++++|+.+|++++++.+... . .....+..+.++|.++..+|++++|+.+|+++++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP----E---DPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----C---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----c---cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999877421 1 1124577889999999999999999999999999
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.+........+.....++. ++..++++.+++.+|++|
T Consensus 136 ~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 136 YAQQADDQVAIACAFRGLGD--LAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHH--HHHHCcCHHHHHHHHHHH
Confidence 98877544444555566666 788888999998888764
No 39
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=3.2e-08 Score=92.42 Aligned_cols=181 Identities=7% Similarity=-0.097 Sum_probs=132.4
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
....+..|++++|...+..... ........ ......+..++..+...+++..|+.+++.+.........
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~-------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~--- 150 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELK-------KEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID--- 150 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT-------TCCCCHHH-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC---
T ss_pred HHHHHHHhhHHHHHHHHHHHhc-------cccCChHH-HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc---
Confidence 3456788999999888863321 12222211 111112223444554667889999999888763332222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
. ......+++||.++..+|++++|+.+|++++++.+... .....++..+.++|.++..+|++++|+.+|++
T Consensus 151 -~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 151 -V-YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp -T-THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 23455789999999999999999999999999776531 12236678899999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHh-hhccccchhcC
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKN-HLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~-~~~~l~~~~~~ 392 (392)
++++.+........+.+...++. ++..+++ +.+|+.+|++|
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~--~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGE--CLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHH--HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH--HHHHhCCcHHHHHHHHHHH
Confidence 99999998777778888889998 8888994 69999999875
No 40
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=9.2e-10 Score=81.25 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=39.2
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 5689999999988 89999999999999999984 49999987654
No 41
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=8.9e-10 Score=80.07 Aligned_cols=44 Identities=30% Similarity=0.782 Sum_probs=39.3
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5699999999988 89999999999999999985 49999987653
No 42
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=3e-10 Score=95.63 Aligned_cols=51 Identities=22% Similarity=0.574 Sum_probs=42.8
Q ss_pred CCCCCCC---ccCceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCC
Q 016262 79 GYDAQSF---KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADI 130 (392)
Q Consensus 79 ~~~~~~~---~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~ 130 (392)
||+...+ ..+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+
T Consensus 18 g~~~~~~~~~l~~~~~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 18 GFSKTLLGTKLEAKYLCSACRNVLR-RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp SBCGGGTGGGCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcchhhhhccCCcCcCCCCCChhhc-CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 6665544 225799999999999 99999999999999999994 499999865
No 43
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=1.1e-08 Score=95.82 Aligned_cols=176 Identities=11% Similarity=0.031 Sum_probs=122.9
Q ss_pred HhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHH
Q 016262 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~ 273 (392)
...|++++|...+..+.+..... ... ......+..++.++..+|++.+|+.+++.+.+....++. ..
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~~-----~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~ 114 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKKA-----GNE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FR 114 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHHT-----TCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHh-----CCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence 35678888887776554332210 111 112345566677777889999999999999888877654 33
Q ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~-g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
.....+.++|.++... |++++|+.+|++++++..... .....+..+.++|.++..+|++++|+..|+++++
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567899999999996 999999999999999876421 1113466789999999999999999999999886
Q ss_pred HHHHhhc-CCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTL-KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~-~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+...... ..........++. ++..++++..|+.+|++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGL--CQLAATDAVAAARTLQEG 225 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHH--HHHHTTCHHHHHHHHHGG
T ss_pred HHhcCCcccHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 5322211 0111123445555 677788888888888764
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=2.4e-08 Score=90.54 Aligned_cols=190 Identities=15% Similarity=0.051 Sum_probs=138.5
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+.-.+..|++++|...+..+.......+. ... +.....+..++.++...|++..|+.+++.+.....++.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLG--KDH----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--TTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC--Ccc----hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 344455567889999999988766544333211 111 22344556667777788999999999999987766653
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~ 345 (392)
+.. .......+.+++.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+.
T Consensus 120 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 120 GKF---HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD------PNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp CTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 322 1334668899999999999999999999999998776543222 2557788899999999999999999
Q ss_pred HHHHHHHHHHHhh-------------------------------------------cCCCchhHHHhhcchhHHHHHHhh
Q 016262 346 GFQEAIKRLESLT-------------------------------------------LKPEEAGLEQRCWNSSTTNFQKNH 382 (392)
Q Consensus 346 ~~~~al~ile~l~-------------------------------------------~~~~~a~l~~~~~~~~~~~~l~~~ 382 (392)
.|++++++..... .+|........++. ++..++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~ 268 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA--LYRRQGKL 268 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH--HHHHTTCH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHcCCH
Confidence 9999999865521 23444555566666 78888999
Q ss_pred hccccchhcC
Q 016262 383 LNQLPKFRSA 392 (392)
Q Consensus 383 ~~~l~~~~~~ 392 (392)
.+|+.+|++|
T Consensus 269 ~~A~~~~~~a 278 (283)
T 3edt_B 269 EAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 45
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.1e-10 Score=86.55 Aligned_cols=52 Identities=27% Similarity=0.733 Sum_probs=43.6
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc----------CCCCCCCcCCcc--cchhhHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQ 140 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~ 140 (392)
+.+.|+||++.+. +|+.++|||+||..||..| ..||.||..+.. +.+|..+.
T Consensus 18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 18 EEVTCPICLELLT-QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCTTTCSCCS-SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred CCCCCCCCCcccC-CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 4689999999988 8999999999999999886 359999998875 55565443
No 46
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.84 E-value=1.4e-08 Score=83.90 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=117.0
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~ 311 (392)
..+..++..+...|++..++.+++++.+....... ...+......++.++...|++++|+.+|++++++......
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666788899999999999888776544 3455678899999999999999999999999998766311
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
....+..+.++|.++..+|++++|+.+|++++++.+.....+..+.....++. ++..++++.+++.+|++
T Consensus 85 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 85 --------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN--AYTALGNHDQAMHFAEK 154 (164)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH--HHHHccCHHHHHHHHHH
Confidence 12456778899999999999999999999999999888655555666667776 88889999999998876
Q ss_pred C
Q 016262 392 A 392 (392)
Q Consensus 392 ~ 392 (392)
|
T Consensus 155 a 155 (164)
T 3ro3_A 155 H 155 (164)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=1.1e-08 Score=95.76 Aligned_cols=137 Identities=9% Similarity=-0.008 Sum_probs=111.8
Q ss_pred cccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q 016262 241 CRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV 320 (392)
Q Consensus 241 C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~ 320 (392)
+...|++..|+..++.+.+...+++. .......+.++|.++..+|++++|+.+|++++++..... ..
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~ 113 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--------QF 113 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------CH
Confidence 34678889999999999888877754 344567899999999999999999999999999876532 12
Q ss_pred hHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 321 LDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 321 ~dla~sl~~l~~v~~~l-g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+..+.++|.++..+ |++++|+.+|++++++..........+.....++. ++..++++.+|+.+|++|
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD--LKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHH
Confidence 24577899999999995 99999999999999998876433333556677777 888999999999999864
No 48
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.83 E-value=3.1e-09 Score=96.89 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=54.4
Q ss_pred CceeccccccccccCcee-cccCcHhHHHhHHhcCC------CCC--CCcCCcc--cchhhHHHHHHHHHHhhh
Q 016262 88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFKD------CPL--CGADIEK--IEADTTLQDVVDRFIEGH 150 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~~------CP~--C~~~~~~--~~~n~~l~~~~~~~~~~~ 150 (392)
..+.||||+++|. +|++ +.|||+||+.||..||. ||. |+..+.. +.+|..|.++++.+....
T Consensus 180 ~el~CPIcl~~f~-DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 180 IELTCPITCKPYE-APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp CCSBCTTTSSBCS-SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred eeeECcCccCccc-CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence 4699999999999 8887 49999999999999863 999 9998776 999999999998886543
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.81 E-value=8.6e-10 Score=82.18 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=40.8
Q ss_pred CceeccccccccccCceecccCcH-hHHHhHHhcCCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +++.++|||. ||..|+..|..||.||..+..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 3689999999988 9999999999 999999999999999998876
No 50
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.5e-09 Score=78.53 Aligned_cols=44 Identities=25% Similarity=0.739 Sum_probs=37.7
Q ss_pred Cceecccccc-ccccCc----eecccCcHhHHHhHHhc-----CCCCCCCcCCcc
Q 016262 88 GPLSCMICQA-LLFECS----KCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~-~~~~~p----~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
+++.|+||++ ++. .| ++++|||+||..||.+| ..||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4688999999 877 66 57899999999999998 349999998765
No 51
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=9.9e-10 Score=84.43 Aligned_cols=44 Identities=27% Similarity=0.716 Sum_probs=39.0
Q ss_pred CceeccccccccccC----ceecccCcHhHHHhHHhc-------CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRF-------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. + |++++|||.||..||..| ..||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFT-EEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCC-TTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccc-ccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 5689999999988 6 999999999999999998 359999997754
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.79 E-value=2.1e-09 Score=87.23 Aligned_cols=57 Identities=26% Similarity=0.623 Sum_probs=46.0
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc---cchhhHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDR 145 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~~~~ 145 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. ..++..+.+++..
T Consensus 22 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 22 KSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 4689999999988 99999999999999999883 59999999876 3445555554443
No 53
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.7e-09 Score=77.71 Aligned_cols=38 Identities=34% Similarity=0.903 Sum_probs=34.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-------CCCCC
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C 126 (392)
+.+.|+||++.+. +|++++|||+||..||.+|+ .||.|
T Consensus 19 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5689999999988 89999999999999999984 49987
No 54
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=2.4e-08 Score=81.73 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
....+.+++++|..++..|++++|+.+|.+++++ .+. -+..+.++|.++..+|++++|+..|++++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------~p~-------~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------DPS-------NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4456778999999999999999999999999976 232 25678999999999999999999999999
Q ss_pred HHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 352 KRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 352 ~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++-... ...+..+.+..+++. .+..++++.+|+.+|++|
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~--~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGN--AFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 987765 333444556677777 888999999999999864
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.76 E-value=1e-07 Score=87.85 Aligned_cols=188 Identities=15% Similarity=0.088 Sum_probs=135.7
Q ss_pred HHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCC
Q 016262 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 188 c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+.-.+..|++++|...+..+.......+.. .. +.....+..++.++...|++..|+.+++++.+....+.+.
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 74 ILALVYRDQNKYKDAANLLNDALAIREKTLGK--DH----PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 33444667889999998887655443332211 11 2223445556666668899999999999987776654221
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016262 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 268 ~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~ 347 (392)
. .......+..++.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+..|
T Consensus 148 ~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 148 D---HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD------PNVAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp T---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred C---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 2345678899999999999999999999999998766432211 245677889999999999999999999
Q ss_pred HHHHHHHHHh-------------------------------------------hcCCCchhHHHhhcchhHHHHHHhhhc
Q 016262 348 QEAIKRLESL-------------------------------------------TLKPEEAGLEQRCWNSSTTNFQKNHLN 384 (392)
Q Consensus 348 ~~al~ile~l-------------------------------------------~~~~~~a~l~~~~~~~~~~~~l~~~~~ 384 (392)
++++++.... ..+|..+.+...++. .+..++++.+
T Consensus 219 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 296 (311)
T 3nf1_A 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA--LYRRQGKFEA 296 (311)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH--HHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH--HHHHCCCHHH
Confidence 9999986542 145666666667777 8888999999
Q ss_pred cccchhcC
Q 016262 385 QLPKFRSA 392 (392)
Q Consensus 385 ~l~~~~~~ 392 (392)
|+.+|++|
T Consensus 297 A~~~~~~a 304 (311)
T 3nf1_A 297 AETLEEAA 304 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 56
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.4e-09 Score=77.40 Aligned_cols=43 Identities=35% Similarity=0.794 Sum_probs=37.9
Q ss_pred CceeccccccccccCc-------eecccCcHhHHHhHHhcC----CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+.+.|+||++.+. ++ ++++|||.||..||..|. .||.||..+.
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHH-HHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCcccc-ccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 5689999999988 55 899999999999999993 6999998765
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.74 E-value=2.7e-09 Score=92.63 Aligned_cols=58 Identities=28% Similarity=0.534 Sum_probs=49.6
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-----CCCCCCcCCcc--cchhhHHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF 146 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~~~~~ 146 (392)
+.+.|+||++++. +|++++|||+||..||..|+ .||.||..+.. +.++..+..++..+
T Consensus 17 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCChhhc-CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 5799999999998 89999999999999999983 69999998887 56777776666554
No 58
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.72 E-value=2.5e-09 Score=78.64 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=38.9
Q ss_pred CceeccccccccccCc-------eecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +| +.++|||.||..||..|. .||.||..+..
T Consensus 9 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHH-HHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhh-ccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 5689999999988 66 899999999999999984 69999998765
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.71 E-value=1.6e-07 Score=89.96 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=119.6
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
...+..++.++..+|++..|+.+++++.+....... ...+...+..++.++...|++++|+.+|++++++.....
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 445566677777889999999999999888777644 345567899999999999999999999999998876531
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
.....+..+.++|.++..+|++++|+.+|++++++.......+..+.....++. ++..++++.+|+.+|+
T Consensus 262 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 262 --------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN--AYTALGNHDQAMHFAE 331 (406)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred --------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 123457788899999999999999999999999999888655566667777777 8888999999999887
Q ss_pred cC
Q 016262 391 SA 392 (392)
Q Consensus 391 ~~ 392 (392)
+|
T Consensus 332 ~a 333 (406)
T 3sf4_A 332 KH 333 (406)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 60
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=7.7e-09 Score=72.80 Aligned_cols=38 Identities=39% Similarity=0.928 Sum_probs=34.1
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC-------CCCCC
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C 126 (392)
+.+.|+||++.+. +|++++|||+||..||..|+ .||.|
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK-EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS-SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC-ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4689999999988 89999999999999999992 48887
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.70 E-value=1.2e-07 Score=90.98 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=141.1
Q ss_pred hHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCC
Q 016262 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
.-.+...+..|++++|...+...... .+.... .....+..++..+...|++..|+.+++++......+..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~-------~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLK---TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------CCSCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-------CcccHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 44455688899999999988754322 222221 12334555666666889999999999999888777654
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCC-------
Q 016262 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN------- 339 (392)
Q Consensus 267 ~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~------- 339 (392)
.......+..++.++...|++++|+.+|++++++....... ..++..+.++|.++..+|+
T Consensus 83 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~~~~~ 149 (406)
T 3sf4_A 83 -----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------VGEARALYNLGNVYHAKGKSFGCPGP 149 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHHHHHHHHHHHTCC----
T ss_pred -----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------cchHHHHHHHHHHHHHcCCccccccc
Confidence 34556788999999999999999999999999988764211 2457788999999999999
Q ss_pred -------------HHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 340 -------------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 340 -------------~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++|+.+|++++++.+.....+..+.....++. ++..++++.+++.+|++|
T Consensus 150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN--THYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTBHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 999999999999999988666667777777877 888899999999988764
No 62
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=5.8e-09 Score=77.74 Aligned_cols=45 Identities=24% Similarity=0.785 Sum_probs=38.1
Q ss_pred ccCceeccccccccccCc---eecccCcHhHHHhHHhc----CCCCCCCcCCc
Q 016262 86 KIGPLSCMICQALLFECS---KCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 86 ~~~~~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
..+...|+||++.+. .+ +.++|+|.||..||..| ..||.||..+.
T Consensus 20 ~~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 335689999999987 54 78899999999999999 35999998765
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=7.3e-08 Score=93.30 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=119.6
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
...+..++.++...|++..|+.+++++.+....... .......+..++.++..+|++++|+.+|++++++.....
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 345556677777889999999999999887776543 344567889999999999999999999999999876531
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
.....+..+..+|.++..+|++++|+.+|++++++.......+..+.+...++. ++..++++.+|+.+|+
T Consensus 298 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 298 --------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN--AHSAIGGHERALKYAE 367 (411)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HHHHhccHHHHHHHHH
Confidence 122457788899999999999999999999999999998655566666777777 8889999999999988
Q ss_pred cC
Q 016262 391 SA 392 (392)
Q Consensus 391 ~~ 392 (392)
+|
T Consensus 368 ~a 369 (411)
T 4a1s_A 368 QH 369 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=6.7e-08 Score=93.54 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=115.7
Q ss_pred hhhcccccccccccc-----------------hhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHH
Q 016262 232 AVLGMLGDCCRAMGD-----------------ADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQA 294 (392)
Q Consensus 232 ~~L~~fC~~C~~~gd-----------------hh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~ 294 (392)
..+..++.++...|+ +..|+.+++++.+....+.. .......+..++.++...|++++
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~ 241 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD-----RGAQGRACGNLGNTYYLLGDFQA 241 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHcCChHH
Confidence 345556666667778 77888888887777666543 34566789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchh
Q 016262 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSS 374 (392)
Q Consensus 295 A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~ 374 (392)
|+.+|++++++...... ...++..+.++|.++..+|++++|+.+|++++++..........+.+...++.
T Consensus 242 A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-- 311 (411)
T 4a1s_A 242 AIEHHQERLRIAREFGD--------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN-- 311 (411)
T ss_dssp HHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 99999999998776321 12456788899999999999999999999999999987555555666677777
Q ss_pred HHHHHHhhhccccchhcC
Q 016262 375 TTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 375 ~~~~l~~~~~~l~~~~~~ 392 (392)
++..++++.+|+.+|++|
T Consensus 312 ~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 888889999999988764
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.70 E-value=3.2e-09 Score=80.06 Aligned_cols=43 Identities=30% Similarity=0.923 Sum_probs=40.4
Q ss_pred ceeccccccccccCceecccCcH-hHHHhHHhcCCCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
...|+||++.+. +++.+||||. ||..|+..++.||.||..+..
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CCEeEEeCcccC-cEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 578999999988 9999999999 999999999999999998886
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.68 E-value=4.2e-08 Score=94.83 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=119.5
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
.|..+...|++..|+.+++++......+.. .......+.++|.++..+|++++|+.+|.+++++.+....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKD-----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA----- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST-----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc-----
Confidence 455666788999999999998877666654 3345678999999999999999999999999998766311
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
....++..+.++|.++..+|++++|+.+|++++++.+.....+..+....+++. ++..++++.+|+.+|++|
T Consensus 179 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~--~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 179 --YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL--CKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp --THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 123578889999999999999999999999999999998666677778888888 999999999999999874
No 67
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.68 E-value=1.3e-08 Score=101.31 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.......++.+..++ .+|++++|+..|+++|++++..+.... .+++.++++++.++..+|++++|+.+|++++
T Consensus 284 ~~~~~~ll~~ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 284 WKEVQESLKKIEELK-AHWKWEQVLAMCQAIISSNSERLPDIN------IYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTS------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhccCcCCccc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344556666676666 568999999999999987765443322 3789999999999999999999999999999
Q ss_pred HHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 352 KRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 352 ~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++++.+ ..||..+..+++++. +|..++++.+|+++|++|
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~--~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGK--LQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Confidence 999998 999999999999999 999999999999999986
No 68
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=6.3e-09 Score=77.62 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=40.4
Q ss_pred CceeccccccccccCceecccCcH-hHHHhHHhcCCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.++|||. ||..|+.....||.||..+..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 3578999999988 9999999999 999999999999999998776
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.67 E-value=4e-08 Score=95.07 Aligned_cols=143 Identities=12% Similarity=0.015 Sum_probs=119.3
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
+.|..+...|++..|+.+++++......+.. .........++|.++..+|+++.|+.+|++++++......
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---- 176 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSD-----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL---- 176 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT----
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC----
Confidence 3455566788999999999999887777654 3456788999999999999999999999999998765221
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
....++..+.++|.++..+|++++|+.+|++++++.+.....+..+....+++. ++..++++.+|+.+|++|
T Consensus 177 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~--~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 177 ---YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN--SYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 122578889999999999999999999999999999988555566777888888 999999999999999874
No 70
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.66 E-value=7.5e-09 Score=77.76 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=37.5
Q ss_pred Cceecccccccccc-Cceecc--cCcHhHHHhHHhcC-----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFE-CSKCTP--CSHVYCKACISRFK-----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~-~p~~~~--C~h~fC~~Ci~~~~-----~CP~C~~~~~~ 132 (392)
+++.|+||++.+.. +++.++ |||+||..|+..+| .||.||..+..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 56899999998742 456665 99999999999886 49999998765
No 71
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=1.7e-07 Score=87.49 Aligned_cols=179 Identities=7% Similarity=-0.094 Sum_probs=124.2
Q ss_pred HHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHH
Q 016262 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+... +......... .........++......|++..|+.+++.+.........
T Consensus 84 ~~~~~~~y~~A~~~~~~~-------l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----- 150 (293)
T 2qfc_A 84 MLCKQKRYKEIYNKVWNE-------LKKEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----- 150 (293)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HHTCCCCHHH-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-----
T ss_pred HHHHhhhHHHHHHHHHHH-------hccccCChhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-----
Confidence 356778888887776522 1111111111 111122233445554677888899888877654333222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.......++++|.++..+|++++|+.+|++++++.+... ... .-.+..+.++|.++..+|++++|+.+|++++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----ccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 112456899999999999999999999999998876521 111 1123678899999999999999999999999
Q ss_pred HHHHHhhcCCCchhHHHhhcchhHHHHHHhhhcc-ccchhcC
Q 016262 352 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ-LPKFRSA 392 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~-l~~~~~~ 392 (392)
++..........+.+...++. ++..++++.+| +.||++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~--~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGE--CLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHH--HHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHH--HHHHcCCcHHHHHHHHHHH
Confidence 999776666666777788888 88899999999 7777764
No 72
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.66 E-value=4.9e-09 Score=75.34 Aligned_cols=44 Identities=32% Similarity=0.715 Sum_probs=38.2
Q ss_pred CceeccccccccccCc-------eecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. ++ +.++|||.||..||..|. .||.||..+..
T Consensus 2 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHH-HHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhh-CccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4578999999987 55 889999999999999984 59999998764
No 73
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.65 E-value=7e-09 Score=75.63 Aligned_cols=45 Identities=36% Similarity=0.817 Sum_probs=38.8
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhc----CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+.++++.++|||.||..|+..| ..||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999998844589999999999999988 359999998765
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.64 E-value=4.3e-08 Score=103.78 Aligned_cols=133 Identities=16% Similarity=0.246 Sum_probs=84.4
Q ss_pred HHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 226 ~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
.||.|.+.+.++|.++..+|++.+|+.+++++.+. .+.. ..++.++|.++..+|++++|+..|+++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777788888888877888888888888777544 2222 245677788888888888888888877764
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhcc
Q 016262 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~ 385 (392)
. +. .+..+.++|.++..+|++++|+..|+++++ .+|..+....+++. ++..++++.+|
T Consensus 73 ~-------P~-------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~------l~P~~~~a~~~Lg~--~~~~~g~~~eA 130 (723)
T 4gyw_A 73 S-------PT-------FADAYSNMGNTLKEMQDVQGALQCYTRAIQ------INPAFADAHSNLAS--IHKDSGNIPEA 130 (723)
T ss_dssp C-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHH--HHHHTTCHHHH
T ss_pred C-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHH--HHHHcCCHHHH
Confidence 2 11 144555666666666666666666666553 24555555555555 55555555666
Q ss_pred ccchhc
Q 016262 386 LPKFRS 391 (392)
Q Consensus 386 l~~~~~ 391 (392)
+.+|++
T Consensus 131 i~~~~~ 136 (723)
T 4gyw_A 131 IASYRT 136 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.63 E-value=1.7e-07 Score=86.70 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=118.2
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~ 311 (392)
..+..++.++...|++..|+.+++++.+....... ...+...+..++.++...|++++|+.+|++++++.....
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~- 257 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK- 257 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-
Confidence 34555666666788999999999998877766543 344567889999999999999999999999998876531
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.....+..+..+|.++..+|++++|+.+|++++++.......+........++. ++..++++.+|+.+|++
T Consensus 258 -------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 258 -------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN--AYTALGNHDQAMHFAEK 328 (338)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH--HHHHcCChHHHHHHHHH
Confidence 123457778899999999999999999999999999988655566666677777 88899999999999886
Q ss_pred C
Q 016262 392 A 392 (392)
Q Consensus 392 ~ 392 (392)
|
T Consensus 329 a 329 (338)
T 3ro2_A 329 H 329 (338)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.62 E-value=1.7e-07 Score=86.72 Aligned_cols=182 Identities=16% Similarity=0.114 Sum_probs=123.8
Q ss_pred hHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCC
Q 016262 187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 187 ~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~ 266 (392)
...+.-.+..|++++|...+..+....... .. -+.....+..++..+...|++..|+.+++++.+.......
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 47 SQLGNAYFYLHDYAKALEYHHHDLTLARTI----GD----QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----cc----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence 334444677888888888886554433221 11 1222344555666666789999999999999888777654
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 016262 267 DDLEIIHTLSVSLNKIGDLKYYGGD--------------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVS 326 (392)
Q Consensus 267 ~~~e~~~~l~~~l~~lg~l~~~~g~--------------------l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~s 326 (392)
..........++.++...|+ +++|+.+|++++.+.+.... ....+..
T Consensus 119 -----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~ 185 (338)
T 3ro2_A 119 -----KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------RAAQGRA 185 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHH
Confidence 34456788999999999999 99999999988887655321 1244566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+.++|.++..+|++++|+.+|++++++.......+..+.....++. ++..++++.+++.+|++
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN--AYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 7777888888888888888888888777766443344445555555 66666677777666654
No 77
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.60 E-value=1.2e-08 Score=71.08 Aligned_cols=44 Identities=27% Similarity=0.760 Sum_probs=37.7
Q ss_pred Cceecccccccccc---CceecccCcHhHHHhHHhc----CCCCCCCcCCc
Q 016262 88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~ 131 (392)
....|+||++.+.+ .++.++|+|.||..||..| ..||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35789999999863 3889999999999999999 46999998764
No 78
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=2.2e-08 Score=73.15 Aligned_cols=45 Identities=36% Similarity=0.905 Sum_probs=38.2
Q ss_pred Cceeccccccccc--cCceecccCcHhHHHhHHhc----CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
....|+||++.+. +.++.++|+|.||..||..| ..||.||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4578999999875 25788999999999999998 359999998765
No 79
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=1.7e-06 Score=74.72 Aligned_cols=166 Identities=20% Similarity=0.182 Sum_probs=122.0
Q ss_pred hHhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhC
Q 016262 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L 264 (392)
.+...+.-.+..|++++|...+..+....... . .. +.....+..++.++..+|++..++.+++++.+.....
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKS----G-DH---TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----C-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----C-Cc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 34445555678899999998887554433221 1 11 2223455566777778899999999999998888877
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHH
Q 016262 265 PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 265 ~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~ 344 (392)
+.. .......+.+++.++..+|++++|+.+|++++++.+... .....+..+.++|.++..+|++++|+
T Consensus 100 ~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~ 167 (203)
T 3gw4_A 100 PED----PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------DQVAIACAFRGLGDLAQQEKNLLEAQ 167 (203)
T ss_dssp CCC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Ccc----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 632 224567889999999999999999999999999865521 12345777899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchhHHHhh
Q 016262 345 DGFQEAIKRLESLTLKPEEAGLEQRC 370 (392)
Q Consensus 345 ~~~~~al~ile~l~~~~~~a~l~~~~ 370 (392)
.+|++++++.+.+......+.++..+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~~ 193 (203)
T 3gw4_A 168 QHWLRARDIFAELEDSEAVNELMTRL 193 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 99999999999985544444444433
No 80
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.58 E-value=1.8e-08 Score=70.11 Aligned_cols=44 Identities=27% Similarity=0.754 Sum_probs=36.7
Q ss_pred Cceecccccccccc--Cceecc-cCcHhHHHhHHhcC----CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFE--CSKCTP-CSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~--~p~~~~-C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.+.+ .++.++ |+|.||..||..|. .||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45789999999873 167776 99999999999994 4999998764
No 81
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.57 E-value=1.7e-08 Score=75.71 Aligned_cols=45 Identities=24% Similarity=0.719 Sum_probs=37.4
Q ss_pred CceeccccccccccC--ceecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
..+.|+||++.+.+. .+.++|+|.||..||.+|+ .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 468999999998732 3567999999999999994 59999998765
No 82
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.56 E-value=2.9e-06 Score=69.55 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=111.7
Q ss_pred HHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc
Q 016262 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.+.-.+..|++++|...+..+.+...... .. ......+..++..+...|++..|+.+++.+.........
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-- 84 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFG----DK----AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-- 84 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhC----Cc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Confidence 34445778899999988876554433211 10 111335556667776889999999999999888777644
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016262 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~ 348 (392)
..........++.++...|++++|+.+|++++++.+... .....+..+.++|.++..+|++++|+.+|+
T Consensus 85 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 85 ---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------DRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------chHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 334567788999999999999999999999999876532 123557778899999999999999999999
Q ss_pred HHHHHHHHh
Q 016262 349 EAIKRLESL 357 (392)
Q Consensus 349 ~al~ile~l 357 (392)
+++++.+.+
T Consensus 154 ~a~~~~~~~ 162 (164)
T 3ro3_A 154 KHLEISREV 162 (164)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999987654
No 83
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=77.91 Aligned_cols=43 Identities=28% Similarity=0.717 Sum_probs=37.3
Q ss_pred CceeccccccccccC---ceecccCcHhHHHhHHhcC----CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.+. . ++.++|+|.||..||..|. .||.||..+.
T Consensus 39 ~~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYV-KGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECC-TTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhc-CCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 5688999999877 4 7789999999999999994 4999998765
No 84
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.8e-09 Score=75.58 Aligned_cols=43 Identities=28% Similarity=0.822 Sum_probs=37.9
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. + ++++|||.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRA-D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCC-S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCcc-C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 4689999999988 5 999999999999999994 49999987764
No 85
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.8e-08 Score=71.84 Aligned_cols=44 Identities=27% Similarity=0.814 Sum_probs=40.6
Q ss_pred CceeccccccccccCceecccCcH-hHHHhHHhcCCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+...|.||++... +++.+||||. ||..|+...+.||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV-NWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC-CCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC-CEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 4678999999988 9999999999 999999999999999998876
No 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.53 E-value=3.3e-07 Score=90.48 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=96.1
Q ss_pred ccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHH
Q 016262 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV 323 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dl 323 (392)
+++...++...++......++.+. .......+.||.++..+|++++|+.+|++++++.+.......+ ...
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~-----~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-----~~~ 93 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNR-----EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-----IRS 93 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC--------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-----TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-----hHH
Confidence 444444455555544433333321 2234578999999999999999999999999998876543322 145
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.++.++|.++..+|++++|+.+|++++++.+.+ ..++..+.+....+..-+....++|.+|+.+|++|
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka 164 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 7889999999999999999999999999999988 44555555555544311111234677888888764
No 87
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=4.3e-07 Score=77.56 Aligned_cols=114 Identities=12% Similarity=0.062 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 275 l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
.+..+.++|......|++++|+..|.++|++.-...... .......-+..+.|+|.++..+|++++|+..|+++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 467788999999999999999999999998865411111 000111124578999999999999999999999999996
Q ss_pred HHh-hcCCCchhHH----HhhcchhHHHHHHhhhccccchhcC
Q 016262 355 ESL-TLKPEEAGLE----QRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 355 e~l-~~~~~~a~l~----~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
... +.+|+.+... .+++. .+..|+++..||..|++|
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~--aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRAL--ALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHH--HHHHCCCHHHHHHHHHHH
Confidence 665 8899999888 89999 999999999999999875
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.50 E-value=1.7e-07 Score=99.21 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=121.6
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+.-....|++++|...+..+- ...+.. ...+..++.++..+|++.+|+..++++.+. .+..
T Consensus 16 G~~~~~~G~~~eAi~~~~kAl-------~l~P~~-------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~~- 76 (723)
T 4gyw_A 16 ANIKREQGNIEEAVRLYRKAL-------EVFPEF-------AAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTF- 76 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-------HHCSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------HhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-
Confidence 334678899999998887442 222332 334455666666889999999999887654 2322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
...+.++|.++..+|++++|+..|+++|++ .+. .+..+.++|.++..+|++++|+..|++
T Consensus 77 ------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-------~P~-------~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 77 ------ADAYSNMGNTLKEMQDVQGALQCYTRAIQI-------NPA-------FADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357899999999999999999999999876 222 266789999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++ ..|+.+....+++. ++..++++.+++..|++|
T Consensus 137 Al~------l~P~~~~a~~~L~~--~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 137 ALK------LKPDFPDAYCNLAH--CLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHH------HCSCCHHHHHHHHH--HHHHTTCCTTHHHHHHHH
T ss_pred HHH------hCCCChHHHhhhhh--HHHhcccHHHHHHHHHHH
Confidence 985 47888888888888 899999999998888753
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.49 E-value=6.1e-07 Score=73.20 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 271 ~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
+....+...++.|..+...|++++|+..|++++++ .+. -+..+.++|.++..+|++++|+..|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPE-------NAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 45667888999999999999999999999999865 222 1567789999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 351 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 351 l~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++ .+|........++. ++..++++.+|+..|++|
T Consensus 74 l~------~~p~~~~a~~~lg~--~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 74 IR------LDSKFIKGYIRKAA--CLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HH------HCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HH------hhhhhhHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 85 47788888888888 899999999999999864
No 90
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=5.8e-08 Score=71.93 Aligned_cols=44 Identities=23% Similarity=0.639 Sum_probs=36.4
Q ss_pred CceeccccccccccCce---ecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSK---CTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~---~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
....|+||++.+. .+. +++|+|.||..||..|. .||.||..+..
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFK-PRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCC-SSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccC-CCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4578999999987 443 34999999999999983 59999998765
No 91
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.47 E-value=2.6e-08 Score=82.33 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=39.3
Q ss_pred CceeccccccccccCc-------eecccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +| ++++|||+||..||.+|+ .||.||..+..
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHH-HHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhh-CccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 5689999999988 66 999999999999999994 59999998765
No 92
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.46 E-value=4.2e-08 Score=79.19 Aligned_cols=43 Identities=28% Similarity=0.644 Sum_probs=36.3
Q ss_pred ceeccccccccccCce------------------ecccCcHhHHHhHHhcC---------CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSK------------------CTPCSHVYCKACISRFK---------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~------------------~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~ 132 (392)
+..|+||++.|. .+. .++|+|.||..||..|. .||+||..+..
T Consensus 25 ~~~C~ICl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLA-VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETT-SCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhc-CcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999986 433 78999999999999985 49999987754
No 93
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.8e-07 Score=89.01 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=138.3
Q ss_pred HHHHHHhhhchhhHHHHhhhcHHHHHHHHHhc---CCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERM---GNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 189 ~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~---~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
.+.+.+..|++++|...+..........-... ......-....+.+..++.+|...|++.+++.++.........+.
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34467888999999888753221100000000 000112233345677788888899999999999998888887764
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~ 345 (392)
. ........+.++.++...|++++|+.+|.+++.+....... +..+....++|.++..+|++.+|+.
T Consensus 90 ~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 90 K-----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------FLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp H-----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------SSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred c-----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHccChHHHHH
Confidence 3 23345667889999999999999999999999887653211 2347778899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 346 GFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 346 ~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+++++........++..+.+....+. ++..++++.++..+|++|
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESK--VYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHH--HHHHhCcHHHHHHHHHHH
Confidence 999999888888777777777777777 888999999999988764
No 94
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.40 E-value=6.9e-07 Score=76.58 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=103.3
Q ss_pred HHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHH
Q 016262 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
-.+..|++++|...+..+-+ ..+.+. ..+..++.++...|++..++..++..... ....
T Consensus 14 ~~~~~g~~~~A~~~~~~al~-------~~p~~~-------~~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~~--- 72 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKVLK-------ADPNNV-------ETLLKLGKTYMDIGLPNDAIESLKKFVVL----DTTS--- 72 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-------HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCC---
T ss_pred HHHHcCCHHHHHHHHHHHHH-------hCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----Cchh---
Confidence 45678999999998874432 222222 33444455555677777777776655332 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
......++.+....++++.|+..+.+++.+ .+.. ...+..+|.++..+|++++|+..|++++
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 73 ----AEAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 234566777787888888888888777654 1211 3455677888888888888888888877
Q ss_pred HHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 352 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+ .+|.++.....++. ++..++++.+|+.+|++|
T Consensus 135 ~------~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 135 S------IKPGFIRAYQSIGL--AYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp H------HCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred H------hcchhhhHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 4 36777777777877 888888888888888764
No 95
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.39 E-value=1.7e-06 Score=76.91 Aligned_cols=158 Identities=13% Similarity=0.031 Sum_probs=109.8
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+...+..|++++|...+....+. .+.... ..+.+++.++..+|++..|+.+++.+.+ +.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~ 72 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKL------TNNQDS-------VTAYNCGVCADNIKKYKEAADYFDIAIK----KN 72 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------TTTCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc------cCCCCc-------HHHHHHHHHHHHhhcHHHHHHHHHHHHH----hC
Confidence 344455678899999999988744321 110121 2333455566678899999988887753 22
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~ 345 (392)
+. ....+..+|.++..+|++++|+..|++++++ .+.+......++..+.++|.++..+|++++|+.
T Consensus 73 p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 73 YN-------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp CS-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cc-------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH
Confidence 32 2356788999999999999999999988865 334443444677888999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC--chhHHHhhcchhHHHHHHhh
Q 016262 346 GFQEAIKRLESLTLKPE--EAGLEQRCWNSSTTNFQKNH 382 (392)
Q Consensus 346 ~~~~al~ile~l~~~~~--~a~l~~~~~~~~~~~~l~~~ 382 (392)
.|+++++ .+|. .+.....++. ++..+++.
T Consensus 139 ~~~~al~------~~p~~~~~~~~~~l~~--~~~~~~~~ 169 (228)
T 4i17_A 139 NYKHATD------VTSKKWKTDALYSLGV--LFYNNGAD 169 (228)
T ss_dssp HHHHHTT------SSCHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHh------cCCCcccHHHHHHHHH--HHHHHHHH
Confidence 9999884 4566 5555555555 55444444
No 96
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=8.1e-08 Score=74.79 Aligned_cols=60 Identities=18% Similarity=0.621 Sum_probs=42.6
Q ss_pred CceeccccccccccCceec---ccCcHhHHHhHHhcC------------CCCC--CCcC--Ccc-cchhhHHHHHHHHHH
Q 016262 88 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK------------DCPL--CGAD--IEK-IEADTTLQDVVDRFI 147 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~~~------------~CP~--C~~~--~~~-~~~n~~l~~~~~~~~ 147 (392)
+.+.|+||++.+. .+.++ +|||.||..||..++ .||. |+.. +.. ...+....+++++|.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence 4688999999987 55543 799999999998763 3999 9988 554 222233345666665
Q ss_pred h
Q 016262 148 E 148 (392)
Q Consensus 148 ~ 148 (392)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 97
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.33 E-value=9.1e-08 Score=68.73 Aligned_cols=44 Identities=25% Similarity=0.586 Sum_probs=38.6
Q ss_pred CceeccccccccccCceec--ccCcH-hHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
....|+||++... +++.+ ||||. ||..|+..++ .||.||.++..
T Consensus 6 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3568999999987 77777 99998 9999999987 79999998875
No 98
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=2.7e-06 Score=69.27 Aligned_cols=102 Identities=12% Similarity=0.195 Sum_probs=82.3
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
..+.+|..++..|++.+|+.+++++.+. .+.. ...+.++|.++..+|++++|+..|++++++.....
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-- 76 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-- 76 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--
Confidence 3445677777899999999999988654 3322 34688999999999999999999999998865521
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
.....++..+.++|.++..+|++++|+..|+++++
T Consensus 77 -----~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 77 -----ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22335788899999999999999999999999985
No 99
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=4.4e-06 Score=70.34 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch----hhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ----VLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~----~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
.....+..+|..+...|++++|+..|.+++.+.............. ....+..+.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3467889999999999999999999999999876654322211111 123466788999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++++ +|..+....+++. ++..++++..|+.+|++|
T Consensus 89 al~~------~p~~~~a~~~~g~--~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 89 VLKR------EETNEKALFRRAK--ARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHH------STTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHhc------CCcchHHHHHHHH--HHHHHhcHHHHHHHHHHH
Confidence 9865 6788888888888 899999999999988764
No 100
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.31 E-value=5.6e-06 Score=76.98 Aligned_cols=119 Identities=8% Similarity=0.038 Sum_probs=98.2
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..+|.++..+|++..|+.+++.+.+....+.. ........+.++|.++..+|++++|+.+|++++++.....
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-- 230 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-- 230 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--
Confidence 4566777777899999999999999988887743 2445677899999999999999999999999999876631
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhcCCCc
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRLESLTLKPEE 363 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~-~~~A~~~~~~al~ile~l~~~~~~ 363 (392)
....++..+.++|.++..+|+ +++|+.+|++|+.+.+.+....-.
T Consensus 231 ------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~ 276 (293)
T 3u3w_A 231 ------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp ------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGG
T ss_pred ------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 122568889999999999995 699999999999999988554333
No 101
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.7e-07 Score=68.96 Aligned_cols=45 Identities=27% Similarity=0.671 Sum_probs=35.1
Q ss_pred CceeccccccccccC-------------ceec-ccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFEC-------------SKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-------------p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+...|+||++.|.+. ++.+ +|+|.|+..||.+|. .||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 456788888887631 4455 499999999999994 49999987653
No 102
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.30 E-value=2e-06 Score=84.75 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=98.9
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
+..++.+....|++.+|+..++++.+.......... .......+.++|.++..+|++++|+.+|++++++.+......
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 345566666889999999999999887766544222 233456789999999999999999999999999988754332
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHH---HHHhhhccccc
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSI--GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTN---FQKNHLNQLPK 388 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~l--g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~---~l~~~~~~l~~ 388 (392)
.. +.+..+.++|.++..+ +++++|+..|++++++ +|.++.+...++. ++. .++++.++|.+
T Consensus 132 ~~------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~--~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 132 RI------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAI--ASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp CC------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHH--HHHHHHHSCCCCCTHHH
T ss_pred ch------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHH--HHHHhcCchHHHHHHHH
Confidence 22 3356677777665555 5688999999998854 5666655555544 322 33344556666
Q ss_pred hhc
Q 016262 389 FRS 391 (392)
Q Consensus 389 ~~~ 391 (392)
|++
T Consensus 198 ~~~ 200 (472)
T 4g1t_A 198 LRQ 200 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 103
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.29 E-value=1.2e-07 Score=91.15 Aligned_cols=44 Identities=25% Similarity=0.766 Sum_probs=41.1
Q ss_pred CceeccccccccccCceecccCcH-hHHHhHHhcCCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~ 132 (392)
+.+.|+||++.+. +|+.+||||. ||..|+..|..||.||..+..
T Consensus 294 ~~~~C~IC~~~~~-~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVFIPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-CEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-ceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 4689999999988 9999999999 999999999999999998876
No 104
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.28 E-value=9.9e-07 Score=78.62 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=99.2
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccc-----------cchhHHHhHHHHHH
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAM-----------GDADAAVAYFADSV 258 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~-----------gdhh~a~~~~e~~~ 258 (392)
+.-.++.|++++|...+.... ...+.... .+..++.++..+ |++.+|+..++.+.
T Consensus 46 g~~~~~~g~~~~A~~~~~~al-------~~~P~~~~-------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 111 (217)
T 2pl2_A 46 ARTQLKLGLVNPALENGKTLV-------ARTPRYLG-------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-------HHCTTCHH-------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------HhCCCcHH-------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence 333566777777777765332 22232222 222333333345 77777777776664
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC
Q 016262 259 EFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG 338 (392)
Q Consensus 259 ~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg 338 (392)
+. .+... .....+|.++..+|++++|+..|++++++. . . ...+.++|.++..+|
T Consensus 112 ~~----~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------~--------~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 112 RV----NPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE-D------T--------PEIRSALAELYLSMG 165 (217)
T ss_dssp HH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------C--------HHHHHHHHHHHHHHT
T ss_pred Hh----CcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c------c--------hHHHHHHHHHHHHcC
Confidence 43 33332 456789999999999999999999998773 1 1 455678999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 339 ~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++++|+..|+++++ ..|.+..+...++. ++..++++.+++.+|+++
T Consensus 166 ~~~~A~~~~~~al~------~~P~~~~~~~~la~--~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 166 RLDEALAQYAKALE------QAPKDLDLRVRYAS--ALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHH------HSTTCHHHHHHHHH--HHTC--------------
T ss_pred CHHHHHHHHHHHHH------hCCCChHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 99999999999885 47888888888888 888999999999999864
No 105
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.26 E-value=1.5e-05 Score=76.12 Aligned_cols=179 Identities=13% Similarity=0.052 Sum_probs=124.1
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+..... ..+.... ......+..++..+...|++..+..+++++.......+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~-------~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 88 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALE-------ELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV--- 88 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------TCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-------cCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---
Confidence 4446778999988887753321 1111110 111223445555555788999999999998887777544
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
.......+..++.++...|++++|+.+|++++++.+....... ...+..+.++|.++..+|++++|+.+|++
T Consensus 89 --~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 89 --WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2334567889999999999999999999999998776432211 14566778899999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
++++.+..... ........++. ++...+++.+++.+|++
T Consensus 161 al~~~~~~~~~-~~~~~~~~la~--~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 161 GIEVLSSYQPQ-QQLQCLAMLIQ--CSLARGDLDNARSQLNR 199 (373)
T ss_dssp HHHHTTTSCGG-GGHHHHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred HHHHhhccCcH-HHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 99887665221 12333444555 67777888888877765
No 106
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.26 E-value=1.2e-07 Score=68.30 Aligned_cols=44 Identities=27% Similarity=0.612 Sum_probs=38.2
Q ss_pred CceeccccccccccCceec--ccCcH-hHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+...|.||++.+. +++.+ ||||. ||..|+..|+ .||.||..+..
T Consensus 7 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4578999999988 77776 99999 8999999885 49999998875
No 107
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.24 E-value=6.2e-06 Score=78.41 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=107.6
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
++-.+...++.|++++|...+..... ..+.. ...+..++..+...|++..|+.+++.+.+. .
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~-------~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~ 129 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAIL-------QDPGD-------AEAWQFLGITQAENENEQAAIVALQRCLEL----Q 129 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-------HCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----C
Confidence 45556668889999999998874422 12222 334455566666788888999888877554 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh----------------------------------
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK---------------------------------- 311 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~---------------------------------- 311 (392)
+.. ...+..++.++...|++++|+..|++++++......
T Consensus 130 p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 130 PNN-------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 222 346788899999999999999999988875433211
Q ss_pred ---cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccc
Q 016262 312 ---RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 388 (392)
Q Consensus 312 ---~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~ 388 (392)
..+... .+..+.++|.++..+|++++|+..|++++++ .|..+.+...++. ++..++++.+|+.+
T Consensus 203 al~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~--~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 203 AAHQNGDMI-----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGA--TLANGDRSEEAVEA 269 (365)
T ss_dssp HHHHSCSSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHH
T ss_pred HHHhCcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH--HHHHcCCHHHHHHH
Confidence 111100 1445667788888888888888888777643 3444445555555 55555555555555
Q ss_pred hhc
Q 016262 389 FRS 391 (392)
Q Consensus 389 ~~~ 391 (392)
|++
T Consensus 270 ~~~ 272 (365)
T 4eqf_A 270 YTR 272 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 108
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2e-05 Score=70.09 Aligned_cols=168 Identities=18% Similarity=0.157 Sum_probs=107.9
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+...... . .. ...+..++..+..+|++..|+.+++.+.+........
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~-------~-~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-- 74 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWEL-------H-KD-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD-- 74 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------S-CC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-------h-cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--
Confidence 44567889999999988744321 1 11 1233445555557889999999999887776654332
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------------HHHhhcCCCCCchhhHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-------------------RDAVKRHSNVPSQVLDVAVSLAKV 330 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~-------------------~~~~~~~~~~~~~~~dla~sl~~l 330 (392)
...+......++.++...|++++|+.+|++++++. +.+.... .+....+.++
T Consensus 75 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 145 (258)
T 3uq3_A 75 --YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLE 145 (258)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHH
Confidence 22346788999999999999999999999999841 1111111 1334556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 331 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
|.++..+|++++|+..|++++++ .|....+...++. .+..++++..|+.+|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAA--ALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHH--HHHHhCCHHHHHHHHHH
Confidence 77777778887777777776643 3344444444444 45555555555555543
No 109
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.19 E-value=4.3e-07 Score=87.93 Aligned_cols=43 Identities=30% Similarity=0.813 Sum_probs=38.6
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhc-----CCCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
...|+||++.+. +|+.++|||.||..|+..| ..||.||..+..
T Consensus 332 ~~~C~ICle~~~-~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 378999999988 9999999999999999987 359999998775
No 110
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.17 E-value=4.3e-07 Score=74.82 Aligned_cols=45 Identities=33% Similarity=0.771 Sum_probs=39.0
Q ss_pred cCceeccccccccccCc-------eecccCcHhHHHhHHhc----CCCCCCCcCCcc
Q 016262 87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIEK 132 (392)
Q Consensus 87 ~~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~ 132 (392)
.+.+.|+||++.+. .+ +.++|||.||..||.+| ..||.||..+..
T Consensus 70 ~~~~~C~iC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHH-HHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccc-cccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 35689999999987 55 89999999999999998 469999998765
No 111
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.15 E-value=1.8e-05 Score=75.16 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=94.9
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
++..+...|++.+|+.+++++.+.. +... -...+..+|.++...|++++|+..|++++++. +.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~----p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~- 245 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQN----GDMI-----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-------PE- 245 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHS----CSSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhC----cCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC-
Confidence 3566667788888888888776542 2200 12357789999999999999999999998762 22
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
....+.++|.++..+|++++|+..|++++++ +|..+.....++. ++..++++.+|+.+|++|
T Consensus 246 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 246 ------DYSLWNRLGATLANGDRSEEAVEAYTRALEI------QPGFIRSRYNLGI--SCINLGAYREAVSNFLTA 307 (365)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHHTCCHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 1557789999999999999999999998865 6777888888888 889999999999998864
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.15 E-value=2.6e-06 Score=71.37 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=86.1
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
+|.+.+..|+..+++..++.+ +.. ...-....-.++.++...|++++|+.+|++++++ .+.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a------~~~-----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-------~p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGS------TPS-----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-------QERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHH------SCS-----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC
T ss_pred hHHHHHHcChHHHHHHHHHHh------ccc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Confidence 344444556666666555433 211 2223345568999999999999999999999876 2221
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccch-hc
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF-RS 391 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~-~~ 391 (392)
...+.++|.++..+|++++|+..|+++++ ..|.+......++. ++..++++.+++.+| ++
T Consensus 65 -------~~a~~~lg~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~--~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 65 -------PKAHRFLGLLYELEENTDKAVECYRRSVE------LNPTQKDLVLKIAE--LLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHH--HHHHHCSSSSHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCchHHHHHHHHHHHH------hCCCCHHHHHHHHH--HHHHcCChHHHHHHHHHH
Confidence 56678899999999999999999999884 47788888888887 777788777766654 44
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.11 E-value=2.6e-05 Score=63.29 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=86.2
Q ss_pred HHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 229 ~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~ 308 (392)
...+.+...|..+...|++..|+..++++.+. .+.. ...+.++|.++..+|++++|+..|++++++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 34445556677777899999999999887643 2322 346789999999999999999999999875
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhc
Q 016262 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCW 371 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~ 371 (392)
.+. -...+.++|.++..+|++++|+..|+++++ ..|.+......++
T Consensus 77 ----~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~------l~P~~~~a~~~l~ 122 (126)
T 4gco_A 77 ----DSK-------FIKGYIRKAACLVAMREWSKAQRAYEDALQ------VDPSNEEAREGVR 122 (126)
T ss_dssp ----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHH
T ss_pred ----hhh-------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HCcCCHHHHHHHH
Confidence 222 155678899999999999999999999985 4677766655544
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.09 E-value=1.2e-05 Score=67.92 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
..-...+..+|.++...|++++|+..|++++++ .+.+ ...+.++|.++..+|++++|+..|++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al- 97 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFYN-------VDYIMGLAAIYQIKEQFQQAADLYAVAF- 97 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHHccHHHHHHHHHHHH-
Confidence 344567889999999999999999999988765 3332 4567889999999999999999999988
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...|.++.....++. ++..++++.+|+..|++|
T Consensus 98 -----~l~P~~~~~~~~lg~--~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 98 -----ALGKNDYTPVFHTGQ--CQLRLKAPLKAKECFELV 130 (151)
T ss_dssp -----HHSSSCCHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred -----hhCCCCcHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 457888888888888 999999999999998864
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.09 E-value=2.2e-05 Score=72.86 Aligned_cols=116 Identities=9% Similarity=0.087 Sum_probs=93.1
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~ 311 (392)
..+..+|.++...|++..|+.+++++.+......... ......+.++|.++..+|++++|+.+|++++++....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-- 229 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-- 229 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--
Confidence 3555677777789999999999999988877765421 1122688999999999999999999999999987431
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhc
Q 016262 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA-VDGFQEAIKRLESLTL 359 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A-~~~~~~al~ile~l~~ 359 (392)
.. ...++..+.++|.++..+|++++| ..+|++|+.+.+.+..
T Consensus 230 ~~------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 230 NS------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp TB------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred Cc------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 11 124578889999999999999999 8889999999988743
No 116
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=0.00011 Score=62.47 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=94.2
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCch-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~-e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
+...|......|++..|+..|+.+.+.......... .....-...+.++|.++..+|++++|+..|+++|++.....+-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344455555789999999999999888766322110 1122334589999999999999999999999999986665544
Q ss_pred CCCCCchhhHHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHH
Q 016262 313 HSNVPSQVLDVAVSL----AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQ 368 (392)
Q Consensus 313 ~~~~~~~~~dla~sl----~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~ 368 (392)
.+. -+..+ .+.|.++..+|++++|+..|++++++--+- ..-++...+.+
T Consensus 94 ~pd-------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 94 NQD-------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp TST-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred CCc-------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 443 35566 999999999999999999999999887665 33344444443
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.2e-05 Score=64.47 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
+..+.++|..+...|++++|+..|++++++. +.. ...+.++|.++..+|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 3456777777778888888888887777542 211 455667777777888888887777777743
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. ++..++++.+|+.+|++
T Consensus 68 ----~p~~~~~~~~lg~--~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 68 ----DPNFVRAYIRKAT--AQIAVKEYASALETLDA 97 (126)
T ss_dssp ----CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHH--HHHHHhCHHHHHHHHHH
Confidence 5666666666666 77777777777777765
No 118
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.03 E-value=6.4e-05 Score=66.67 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=112.0
Q ss_pred HHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc
Q 016262 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.+.-.+..|++++|...+... +...+.+.. .+..++.++...|++.+|+..++...+. .+..
T Consensus 11 lg~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~ 72 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERA-------LKENPQDPE-------ALYWLARTQLKLGLVNPALENGKTLVAR----TPRY 72 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------HTTSSSCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCc
Confidence 344467888999988887622 223333332 3344555555788888898888776543 3333
Q ss_pred hHHHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhc
Q 016262 269 LEIIHTLSVSLNKIGDLKYYG-----------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI 337 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~~~-----------g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~l 337 (392)
. .....+|.++..+ |++++|+..|++++++ .+.. ...+.++|.++..+
T Consensus 73 ~-------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 73 L-------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY-------APLHLQRGLVYALL 131 (217)
T ss_dssp H-------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHT
T ss_pred H-------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc-------HHHHHHHHHHHHHc
Confidence 3 3567778888877 8888898888888765 3321 45677899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 338 GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 338 g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
|++++|+..|++++++- ..+.+...++. ++..++++..++..|++|
T Consensus 132 g~~~~A~~~~~~al~~~-------~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-------DTPEIRSALAE--LYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-------CCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcc-------cchHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 99999999999998763 45566677777 888999999999888764
No 119
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.02 E-value=1.6e-05 Score=73.53 Aligned_cols=132 Identities=15% Similarity=0.227 Sum_probs=97.3
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
++..+...|++..|+.+++++.+. .+.. ...+..++.++...|++++|+..|++++++..........
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~- 232 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSI----APED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV- 232 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc-
Confidence 444555667777777776655332 2222 2467889999999999999999999999876543222110
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+..+.++|.++..+|++++|+..|++++++ .|........++. .+..++++.+|+.+|++|
T Consensus 233 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 233 ----DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL------IPQNASTYSAIGY--IHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp ----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCSHHHHHHHH--HHHHHTCHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------CccchHHHHHHHH--HHHHhccHHHHHHHHHHH
Confidence 122456788999999999999999999999865 5667777777887 888999999999999875
No 120
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=8.3e-06 Score=79.37 Aligned_cols=184 Identities=11% Similarity=0.019 Sum_probs=123.4
Q ss_pred hHhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhC
Q 016262 185 FLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL 264 (392)
Q Consensus 185 cl~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L 264 (392)
++...+---+..|++++|...+......... ... . .........++.+....|++..++.+++.+.......
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~----~~~-~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQ----FAK-S---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT----SCH-H---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----ccc-h---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 3444443456788999888887654432211 000 0 1112233444555556778899999999998887776
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHH
Q 016262 265 PMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 344 (392)
Q Consensus 265 ~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~ 344 (392)
..... ......+++.++...|++++|+..+.+++....... .. ..++..+..++.++..+|++.+|.
T Consensus 129 ~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~A~ 195 (434)
T 4b4t_Q 129 KRVFL-----KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD----DK----PSLVDVHLLESKVYHKLRNLAKSK 195 (434)
T ss_dssp SCCSS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS----CS----THHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHH-----HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc----cc----hhHHHHHHHHHHHHHHhCcHHHHH
Confidence 55332 245788999999999999999999999876654321 11 256788899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC-chhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 345 DGFQEAIKRLESLTLKPE-EAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 345 ~~~~~al~ile~l~~~~~-~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..|++++.+...+...+. .+.+...++. ++...++|..+..+|.+
T Consensus 196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 196 ASLTAARTAANSIYCPTQTVAELDLMSGI--LHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHH--HTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHH--HHHHHHhHHHHHHHHHH
Confidence 999999998887743322 2344444444 44555666666666654
No 121
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.99 E-value=1.9e-06 Score=68.48 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=35.6
Q ss_pred CceeccccccccccC-----------------ceecccCcHhHHHhHHhcC----CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
+...|+||++.|.+. .+.++|+|.|+..||..|. .||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456799999987732 2557999999999999993 5999998754
No 122
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.99 E-value=4.1e-05 Score=72.30 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
...+..++.++...|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 280 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL-- 280 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 356788999999999999999999998876 122 1456788999999999999999999998864
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|........++. ++..++++.+|+.+|++|
T Consensus 281 ----~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 281 ----QPGYIRSRYNLGI--SCINLGAHREAVEHFLEA 311 (368)
T ss_dssp ----CTTCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 5777777788888 888999999999998764
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.98 E-value=5.4e-05 Score=72.21 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=104.7
Q ss_pred HHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCC----chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD----DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 228 ~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~----~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL 303 (392)
+.....+..++..+...|++..|+..++.+.......... ..++.......+.+++.++..+|++++|+.+|+++|
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444556667777778899999999999887665443211 123345556789999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhh
Q 016262 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~ 383 (392)
++. +. .+..+.++|.++..+|++++|+..|++++++ .|.+......++. ++..++++.
T Consensus 224 ~~~-------p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~--~~~~~~~~~ 281 (336)
T 1p5q_A 224 ELD-------SN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAV--CQQRIRRQL 281 (336)
T ss_dssp HHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHH--HHHHHHHHH
T ss_pred HhC-------CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHH--HHHHHHHHH
Confidence 762 22 2567789999999999999999999999854 6777777777777 777788777
Q ss_pred cc
Q 016262 384 NQ 385 (392)
Q Consensus 384 ~~ 385 (392)
++
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 124
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=9.7e-05 Score=74.13 Aligned_cols=129 Identities=11% Similarity=0.117 Sum_probs=97.4
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
...+..++..+...|++.+|+.+++++.+. .+.. ...+.+++.++..+|++++|+.+|++++++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 455677788877889999999999888665 2222 457889999999999999999999999876
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
.+. .+..+.++|.++..+|++++|+..|++++++ .|........++.-..+..++++.+|+.+|+
T Consensus 70 --~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 --DKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 222 2567889999999999999999999999865 5666666666666223667799999999988
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.95 E-value=1.8e-05 Score=66.59 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
...+..+|.++...|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PA-------NPIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------Cc-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 4556777777777777777777777776542 11 1445666777777777777777777777643
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. ++..++++.+|+.+|++
T Consensus 75 ----~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGL--ARFDMADYKGAKEAYEK 104 (164)
T ss_dssp ----CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHH--HHHHccCHHHHHHHHHH
Confidence 4566666666666 66677777777777664
No 126
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.8e-05 Score=69.22 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=105.9
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++..+...|++..|+.+++.+.+.. .. ...+..++.++...|++++|+..|++++++.....
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-- 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-----KD-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-- 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc--
Confidence 44455566667888999999998876553 11 24678899999999999999999999998765421
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------HHHh-hcCCCchhHHHhhcc
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR-------------------LESL-TLKPEEAGLEQRCWN 372 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i-------------------le~l-~~~~~~a~l~~~~~~ 372 (392)
.....++..+..+|.++..+|++++|+..|++++++ ++.. ...|....+...++.
T Consensus 73 -----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 73 -----ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 111234677889999999999999999999999983 3333 466777777777777
Q ss_pred hhHHHHHHhhhccccchhcC
Q 016262 373 SSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 373 ~~~~~~l~~~~~~l~~~~~~ 392 (392)
++..++++.+++.+|++|
T Consensus 148 --~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 148 --EYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp --HHHHTTCHHHHHHHHHHH
T ss_pred --HHHHhcCHHHHHHHHHHH
Confidence 788888999999888763
No 127
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.93 E-value=2.5e-06 Score=60.62 Aligned_cols=43 Identities=9% Similarity=0.236 Sum_probs=38.2
Q ss_pred ceeccccccccccCceec-ccCcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
.+.|+|+++++. +|+++ ++||+|++.||.+|. .||..+.++..
T Consensus 3 ~~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 478999999999 99999 999999999999993 59999988765
No 128
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.92 E-value=3.1e-05 Score=73.93 Aligned_cols=145 Identities=14% Similarity=0.036 Sum_probs=108.5
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~ 311 (392)
+.+...+.+....|++..++.+++++.... .... .......+..++.++...|++++|+..|++++++.....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~- 87 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEEL---PPGW---FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCc---hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence 333444445556788888888887775432 2211 123455788999999999999999999999999876621
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--CCCchhHHHhhcchhHHHHHHhhhccccch
Q 016262 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL--KPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 389 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~--~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~ 389 (392)
.....+..+.++|.++..+|++.+|+.+|++++++.+.... +|........++. ++..++++..++.+|
T Consensus 88 -------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 88 -------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ--LLWAWARLDEAEASA 158 (373)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH--HHHHTTCHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH--HHHHhcCHHHHHHHH
Confidence 12245677889999999999999999999999999998733 2556666667777 788889999998888
Q ss_pred hcC
Q 016262 390 RSA 392 (392)
Q Consensus 390 ~~~ 392 (392)
++|
T Consensus 159 ~~a 161 (373)
T 1hz4_A 159 RSG 161 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 129
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00014 Score=60.97 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=94.9
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCC----CCch---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP----MDDL---EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~----~~~~---e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
.+...|..+...|++..|+..+..+........ .... .+.......+.+++.++..+|++++|+.+|+++|.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 344455555578999999999998877654431 1111 124445678899999999999999999999999977
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch-hHHHhhcchhHHHHHHhhhc
Q 016262 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GLEQRCWNSSTTNFQKNHLN 384 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a-~l~~~~~~~~~~~~l~~~~~ 384 (392)
.+. -+..+-++|.++..+|++++|+..|++++++ .|.+. .+...+.. +...++++.+
T Consensus 93 -------~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~--~~~~~~~~~~ 150 (162)
T 3rkv_A 93 -------EET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKI--VTERRAEKKA 150 (162)
T ss_dssp -------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHH--HHHHHHHHTT
T ss_pred -------CCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHH--HHHHHHHHHH
Confidence 222 1566788999999999999999999999855 66766 55655555 5555555544
Q ss_pred c
Q 016262 385 Q 385 (392)
Q Consensus 385 ~ 385 (392)
+
T Consensus 151 ~ 151 (162)
T 3rkv_A 151 D 151 (162)
T ss_dssp S
T ss_pred H
Confidence 4
No 130
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00017 Score=55.45 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+..|++++++ .+.. ...+.++|.++..+|++++|+..|++++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al----- 65 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-------QPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGL----- 65 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHH-----
Confidence 46788999999999999999999999876 2221 4567899999999999999999999988
Q ss_pred hhcCCCc------hhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEE------AGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~------a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
...|.. ..+...++. .+..++.+..++..|++
T Consensus 66 -~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 66 -RYTSTAEHVAIRSKLQYRLEL--AQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp -TSCSSTTSHHHHHHHHHHHHH--HHHHHHCCCCCSSSSSS
T ss_pred -HhCCCccHHHHHHHHHHHHHH--HHHHHHhHhhhHhHHHH
Confidence 445555 555666666 77788888888887765
No 131
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.89 E-value=5.3e-05 Score=65.80 Aligned_cols=157 Identities=12% Similarity=0.078 Sum_probs=92.5
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+..... ..+.. ...+..++.++...|++..|+.+++...+. .+..
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~-------~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~- 75 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALK-------SDPKN-------ELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDS- 75 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-------hCccc-------hHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCC-
Confidence 4446778899999888863321 11111 123333444454667777777777666443 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~-g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~ 348 (392)
......++.++... |++++|+..|+++++ .+..+ +....+..+|.++..+|++++|+..|+
T Consensus 76 ------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 76 ------AEINNNYGWFLCGRLNRPAESMAYFDKALA--------DPTYP----TPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp ------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--------STTCS----CHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--------CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23456777777778 888888888777664 01111 224455667777777777777777777
Q ss_pred HHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 349 EAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 349 ~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+++++ .|........++. .+..++++.+++.+|++
T Consensus 138 ~~~~~------~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 138 RSLAA------QPQFPPAFKELAR--TKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHH------STTCHHHHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred HHHHh------CCCCchHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 76643 3444444555555 55566666666666654
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00018 Score=57.26 Aligned_cols=114 Identities=10% Similarity=0.063 Sum_probs=86.8
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
+...|..+...|++..|+.+++++.+.. +.. ...+.++|.++..+|++++|+..|++++++ .
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~ 68 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA----PED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-------D 68 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------C
Confidence 3444555557888999999988775542 222 357889999999999999999999999876 2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+. ....+.++|.++..+|++++|+..|++++++-......|.+..+...+..
T Consensus 69 p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 69 PN-------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CC-------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 22 14567889999999999999999999999988666555666655554443
No 133
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=5.6e-05 Score=73.34 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC-C-CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN-V-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~-~-~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
.......+..+|..+...|++++|+..|++++++.......... . .......+..+.++|.++..+|++++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34456678999999999999999999999999976553211000 0 001124577888999999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++ ..|..+....+++. .+..++++.+|+.+|++|
T Consensus 299 al~------~~p~~~~a~~~lg~--~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 299 ALE------IDPSNTKALYRRAQ--GWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHT------TCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHH------hCchhHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 884 56788888888888 888999999999998864
No 134
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.87 E-value=4.3e-05 Score=68.24 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=45.5
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+.-.+..|++++|...+...... .+... ..+..++.++...|++..|+.++++..+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~-------~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---- 101 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEI-------DPSSA-------DAHAALAVVFQTEMEPKLADEEYRKALASD---- 101 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHH-------CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc-------CCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence 344454567888999988888643221 11111 122223333334555555555555443321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL 303 (392)
... ......++.++...|++++|+.+|++++
T Consensus 102 ~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 102 SRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 1234455555555555555555555544
No 135
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.86 E-value=2.2e-05 Score=75.32 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 325 ~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..+..+|.++..+|++++|+..|+++++ ..|..+.....++. ++...+++..++.+|++|
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGC--VFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH------HCTTCHHHHHHHHH--HHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 3455677777777888877777777664 36777777777777 777888888888888764
No 136
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.84 E-value=9.2e-05 Score=63.01 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK--- 352 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~--- 352 (392)
.....+||.++..+|++++|+..|+++|++ .+.+ ...+.++|.++..+|++++|+..+++++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-------DPNN-------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 456789999999999999999999999865 2222 34455666666666666666665544432
Q ss_pred ------------------------HHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 ------------------------RLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ------------------------ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.++.. ...|........++. ++..++++.+|+.+|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~--~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL--VYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH--HHHHhCCchhHHHHHHHH
Confidence 12222 446666666667777 788888899999888763
No 137
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.84 E-value=0.00011 Score=69.36 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=113.2
Q ss_pred HhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHH
Q 016262 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~ 273 (392)
+..|++++|...+.... ...+... ....+..++.++...|++..|+.+++++... .+..
T Consensus 192 ~~~~~~~~A~~~~~~a~-------~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~----- 250 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAV-------RLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPND----- 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----
T ss_pred hhcccHHHHHHHHHHHH-------HhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCC-----
Confidence 46677888877775332 1122200 1123344555555788889999988877554 2222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...+..++.++...|++++|+..|++++++. +. ....+.++|.++..+|++++|+..|++++++
T Consensus 251 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 251 --YLLWNKLGATLANGNQSEEAVAAYRRALELQ-------PG-------YIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2467899999999999999999999998762 21 2556788999999999999999999999988
Q ss_pred HHHh-----hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 354 LESL-----TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 354 le~l-----~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.... ..++........++. ++..++++..+...++.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRL--ALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHH--HHHHHTCGGGHHHHHTTC
T ss_pred CCCCCCccccccchhhHHHHHHHH--HHHHhCChHhHHHhHHHH
Confidence 7655 233445666667777 888888888887777653
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.83 E-value=0.00033 Score=60.67 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=96.5
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc-----hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD-----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~-----~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
...+...+..+...|++..|+.+++.+........... ..........+.+++.++..+|++++|+.+|++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666688999999999988865433321100 0111122467889999999999999999999999976
Q ss_pred HHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhcc
Q 016262 306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 306 ~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~ 385 (392)
.+. ....+.++|.++..+|++++|+..|++++++ .|.+..+...++. ++..++++.++
T Consensus 118 -------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~--~~~~~~~~~~~ 175 (198)
T 2fbn_A 118 -------DKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYEL--CVNKLKEARKK 175 (198)
T ss_dssp -------STT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHH--HHHHHHHHHC-
T ss_pred -------Ccc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHH--HHHHHHHHHHH
Confidence 222 2456788999999999999999999998854 6777777777777 77777777766
Q ss_pred c
Q 016262 386 L 386 (392)
Q Consensus 386 l 386 (392)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 6
No 139
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.82 E-value=4.6e-05 Score=69.13 Aligned_cols=175 Identities=8% Similarity=-0.049 Sum_probs=114.2
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
++-.+...+..|++++|...+.... ...+... .....+.+++.++..+|++..|+..++......
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l-------~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---- 82 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVF-------TYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY---- 82 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHG-------GGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-------HhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence 4555667889999999999886331 2222221 012345556666668899999999888775542
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchh----------hHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYY--------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----------LDVAVSL 327 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~--------~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~----------~dla~sl 327 (392)
+... ....++..+|.++.. .|++++|+..|+++++.. +.+.... -.++...
T Consensus 83 p~~~----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 83 QIDP----RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp TTCT----THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc----hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHHHHHHHHHHHHHH
Confidence 2111 234578889999998 999999999999887642 2221110 0123333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHH----------Hhhhccccchhc
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ----------KNHLNQLPKFRS 391 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l----------~~~~~~l~~~~~ 391 (392)
-++|.++..+|++++|+..|+++++.. ...+........++. .+..+ +++.+|+.+|++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~--~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMR--AYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHH--HHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHH--HHHHhcccchhhcccchHHHHHHHHHH
Confidence 678999999999999999999988532 122223445555555 66655 778888888875
No 140
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.82 E-value=1.8e-05 Score=77.28 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=66.0
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD-LQAARSYYVRSLNVRRDA 309 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~-l~~A~~~~e~aL~i~~~~ 309 (392)
...+.+++.+....|++.+|+..++.+... .+.. ...+..+|.++..+|+ +++|+..|++++++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~-------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAAN-------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccC-------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---
Confidence 334444454444566667777776655432 2222 2356677777777775 777777777766531
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccch
Q 016262 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKF 389 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~ 389 (392)
+. -...+.++|.++..+|++++|+..|++++ ..+|.+......++. ++..++++.++|.+|
T Consensus 163 ----P~-------~~~a~~~~g~~~~~~g~~~eAl~~~~kal------~ldP~~~~a~~~lg~--~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 163 ----PK-------NYQVWHHRRVLVEWLRDPSQELEFIADIL------NQDAKNYHAWQHRQW--VIQEFKLWDNELQYV 223 (382)
T ss_dssp ----TT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHH------HHCTTCHHHHHHHHH--HHHHHTCCTTHHHHH
T ss_pred ----CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHH------HhCccCHHHHHHHHH--HHHHcCChHHHHHHH
Confidence 11 13334445555555555555555555544 233444444444444 444444444444444
Q ss_pred h
Q 016262 390 R 390 (392)
Q Consensus 390 ~ 390 (392)
+
T Consensus 224 ~ 224 (382)
T 2h6f_A 224 D 224 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.81 E-value=3.1e-05 Score=73.97 Aligned_cols=113 Identities=10% Similarity=0.006 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc-hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~-~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
.......+.++|.++...|++++|+..|++++++.........+... .....+..+.++|.++..+|++++|+..|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556788999999999999999999999999874321100000000 01123677889999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 351 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 351 l~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++ .|.++....+++. ++..++++.+|+.+|++|
T Consensus 223 l~~------~p~~~~a~~~lg~--~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 223 LEL------DSNNEKGLSRRGE--AHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHh------CCCcHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 864 6788888888888 899999999999999864
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.81 E-value=3.6e-05 Score=64.22 Aligned_cols=93 Identities=9% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+..|++++.+ .+.+ ...+.++|.++..+|++++|+..|++++.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 83 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHYD-------SRFFLGLGACRQAMGQYDLAIHSYSYGAV---- 83 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-------Cccc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----
Confidence 34566677777777777777777666543 2221 33445667777777777777777776663
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..|.++.....++. ++..++++.+|+.+|++
T Consensus 84 --l~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 84 --MDIXEPRFPFHAAE--CLLQXGELAEAESGLFL 114 (148)
T ss_dssp --HSTTCTHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred --cCCCCchHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 34555555666666 66666666666666654
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.80 E-value=0.00024 Score=58.68 Aligned_cols=130 Identities=11% Similarity=0.109 Sum_probs=93.3
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
...+..++..+...|++..|+.+++.+.... +.. ...+..++.++...|++++|+.+|++++++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---- 77 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN----PSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD---- 77 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 4455556666667888899998888775532 212 3467889999999999999999999988762
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+. ....+.++|.++..+|++++|+..|++++++ .|........+.....+..++++.+++.+|+
T Consensus 78 ---~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 78 ---KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 22 1456778999999999999999999998854 4444444433333223556788888888776
Q ss_pred c
Q 016262 391 S 391 (392)
Q Consensus 391 ~ 391 (392)
+
T Consensus 142 ~ 142 (166)
T 1a17_A 142 H 142 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 144
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.79 E-value=5.2e-05 Score=63.53 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=107.7
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+.-.+..|++++|...+..... ..+... ..+..++..+...|++..|+.+++..... .+..
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~- 75 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYD-------ADAFDV-------DVALHLGIAYVKTGAVDRGTELLERSLAD----APDN- 75 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCC-------TTSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-------hCccCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-
Confidence 3345678888888888863321 111121 22333444555678888888888776544 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
......++.++...|++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|++
T Consensus 76 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 76 ------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-------PIN-------FNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------cHh-------HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 2456788899999999999999999888651 211 34567789999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++++ .|........++. ++..++++.+++.+|+++
T Consensus 136 ~~~~------~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 136 ALGL------RPNEGKVHRAIAF--SYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHhc------CccchHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 8754 4556666666666 777888888888888753
No 145
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.78 E-value=1.4e-05 Score=72.28 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=82.7
Q ss_pred HHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCC
Q 016262 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 188 c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+.-.+..|++++|...+.... ...+... ..+..++.++...|++..|+.+++.+.+ . ..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l-------~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~---~~- 68 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLE-------AKKYNSP-------YIYNRRAVCYYELAKYDLAQKDIETYFS-K---VN- 68 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH-------HTTCCCS-------TTHHHHHHHHHHTTCHHHHHHHHHHHHT-T---SC-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-------HhCCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHh-c---cC-
Confidence 34445788899999998886432 1122211 2333444455577888888888876654 1 11
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016262 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 268 ~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~ 347 (392)
... .....+..+|.++...|++++|+.+|++++++. +.. ...+..+|.++..+|++++|+..|
T Consensus 69 ~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 69 ATK---AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR-------LDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp TTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC-------THHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chh---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHccCHHHHHHHH
Confidence 111 134567889999999999999999999888741 211 235667777777778877777777
Q ss_pred HHHH
Q 016262 348 QEAI 351 (392)
Q Consensus 348 ~~al 351 (392)
++++
T Consensus 132 ~~al 135 (272)
T 3u4t_A 132 EKQI 135 (272)
T ss_dssp GGGC
T ss_pred HHHh
Confidence 6654
No 146
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.78 E-value=5e-05 Score=67.10 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=104.4
Q ss_pred HHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHH
Q 016262 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
-.+..|++++|...+..... ..+.. ...+..++.++...|++..|+.+++...+.. +..
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~-------~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~--- 124 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALE-------LDSSA-------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG----MEN--- 124 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----CCS---
T ss_pred HHHHcCCHHHHHHHHHHHHH-------cCCcc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCC---
Confidence 35667777777777653321 11112 2223334445556788888888887765432 222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
......++.++...|++++|+.+|++++++. +. -...+..+|.++..+|++++|+..|++++
T Consensus 125 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 125 ----GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------EN-------DTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp ----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------Cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2356778889999999999999999888652 11 13456778899999999999999988887
Q ss_pred HHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 352 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++ .|....+...++. ++..++++.+++.+|+++
T Consensus 187 ~~------~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 187 EQ------DPGHADAFYNAGV--TYAYKENREKALEMLDKA 219 (243)
T ss_dssp HH------CTTCHHHHHHHHH--HHHHTTCTTHHHHHHHHH
T ss_pred Hh------CcccHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 54 4566666666776 777888888888888753
No 147
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.78 E-value=3.8e-05 Score=78.30 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=97.5
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++..+...|++.+|+.+++++.+. .+.. ...+.++|.++..+|++++|+.+|++++++.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 87 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLAL----HPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA------ 87 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 4445555655778888888888776542 2322 3467899999999999999999999998752
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHH---Hhhhccccch
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ---KNHLNQLPKF 389 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l---~~~~~~l~~~ 389 (392)
+. -...+.++|.++..+|++++|+..|++++++ .|........++. ++..+ +++.+++.+|
T Consensus 88 -p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~--~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 88 -PE-------HPGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLN--WRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp -TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCCTTHHHHHHHH
T ss_pred -CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH--HHHHhhccccHHHHHHHH
Confidence 22 1556788999999999999999999998854 6677777777777 77788 8888888888
Q ss_pred hcC
Q 016262 390 RSA 392 (392)
Q Consensus 390 ~~~ 392 (392)
++|
T Consensus 152 ~~a 154 (568)
T 2vsy_A 152 RAA 154 (568)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 148
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.78 E-value=8.6e-05 Score=74.30 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=96.9
Q ss_pred cccccccccccch-hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 235 GMLGDCCRAMGDA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 235 ~~fC~~C~~~gdh-h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
..++..+...|++ .+|+.+++++.+. .+.. ...+..+|.++...|++++|+.+|++++++.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 167 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKL----EPEL-------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------- 167 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhh----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Confidence 3444555578888 9999999877654 2222 3478899999999999999999999988652
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHH-----
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSI---------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQ----- 379 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~l---------g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l----- 379 (392)
+. ...+.++|.++..+ |++++|+..|+++++ ..|.+......++. ++..+
T Consensus 168 p~--------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~--~~~~~~~~~~ 231 (474)
T 4abn_A 168 KN--------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------MDVLDGRSWYILGN--AYLSLYFNTG 231 (474)
T ss_dssp CC--------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHH--HHHHHHHHTT
T ss_pred CC--------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------hCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 22 36678899999999 888888877777774 47888888888888 88888
Q ss_pred ---HhhhccccchhcC
Q 016262 380 ---KNHLNQLPKFRSA 392 (392)
Q Consensus 380 ---~~~~~~l~~~~~~ 392 (392)
+++.+|+.+|++|
T Consensus 232 ~~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 232 QNPKISQQALSAYAQA 247 (474)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHH
Confidence 9999999999874
No 149
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.78 E-value=1.7e-05 Score=73.36 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=87.9
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
+..+...|++..|+.+++.+.+.... .. .....++.++...|++++|+..|++++++ .+.
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~----~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~-- 191 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQLMKG----CH-------LPMLYIGLEYGLTNNSKLAERFFSQALSI-------APE-- 191 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTT----CS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTT--
T ss_pred HHHHHHccCHHHHHHHHHHHHHhccc----cH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------CCC--
Confidence 33444555666666666555433211 11 23444777777777777777777766643 222
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc---CCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL---KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 318 ~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~---~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
-...+..+|.++..+|++++|+..|++++++...... .+..+.+...++. ++..++++.+|+.+|++|
T Consensus 192 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 192 -----DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH--VCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred -----ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH--HHHHhcCHHHHHHHHHHH
Confidence 1456788999999999999999999999999887722 2555667777777 888899999999988763
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.77 E-value=4.9e-05 Score=64.06 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=79.6
Q ss_pred HHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 228 ~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~ 307 (392)
|.+...+..++......|++.+|+.+++..... .+... ..+.++|.++..+|++++|+..|++++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~-------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNV-------DYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 455556666677666889999999999876543 33333 46789999999999999999999999876
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.+.+ ...+.++|.++..+|++++|+..|++++++
T Consensus 100 -----~P~~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 -----GKND-------YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -----SSSC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333 345778999999999999999999999965
No 151
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=8.9e-05 Score=71.00 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+..++.++...|++++|+..|++++++ .+. ....+.++|.++..+|++++|+..|++++.+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 232 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL-------DPN-------FLDAYINLGNVLKEARIFDRAVAAYLRALSL---- 232 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 4555666666666666666666665543 121 1445667777777888887777777666543
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
.|....+...++. ++..++++..++.+|+
T Consensus 233 --~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 233 --SPNHAVVHGNLAC--VYYEQGLIDLAIDTYR 261 (388)
T ss_dssp --CTTCHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred --CcCCHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 3344444444443 4444444444444443
No 152
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.77 E-value=4.9e-05 Score=76.08 Aligned_cols=117 Identities=19% Similarity=0.087 Sum_probs=90.5
Q ss_pred cchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~--------g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
|++.+|+.+++++.+. .+.. ...+.++|.++..+ |++++|+.+|++++++.-.
T Consensus 193 g~~~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------- 253 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQM----DVLD-------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-------- 253 (474)
T ss_dssp HHHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG--------
T ss_pred hhHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC--------
Confidence 7777788877776553 2322 24677888888888 8999999999999876210
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..+.+..+.++|.++..+|++++|+..|+++++ ..|........++. ++..++++.+++..|++
T Consensus 254 ---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------l~p~~~~a~~~l~~--~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 254 ---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAA------LDPAWPEPQQREQQ--LLEFLSRLTSLLESKGK 317 (474)
T ss_dssp ---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHH--HHHHHHHHHHHHHHTTT
T ss_pred ---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 112266788999999999999999999999985 46777777777777 88899999999887764
No 153
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.75 E-value=0.00024 Score=69.06 Aligned_cols=137 Identities=9% Similarity=0.091 Sum_probs=93.2
Q ss_pred hcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL-----SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l-----~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~ 308 (392)
+..++.++...|++..|+.+++..... .+........+ ......++.++...|++++|+..|++++++.
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-- 287 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-- 287 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 344455555678888888888766532 23332222211 1123445888889999999999999988642
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccc
Q 016262 309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 388 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~ 388 (392)
+.+. ......+..+|.++..+|++++|+..|++++++ .|..+.+...++. .+..++++.+|+.+
T Consensus 288 -----p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~--~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 288 -----PSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNALKDRAE--AYLIEEMYDEAIQD 351 (450)
T ss_dssp -----CSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHH
T ss_pred -----Ccch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHH--HHHHhcCHHHHHHH
Confidence 2211 122456778899999999999999999888754 5666777777777 77788888888888
Q ss_pred hhcC
Q 016262 389 FRSA 392 (392)
Q Consensus 389 ~~~~ 392 (392)
|++|
T Consensus 352 ~~~a 355 (450)
T 2y4t_A 352 YETA 355 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.75 E-value=0.00015 Score=58.29 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+..|.+++.+. +. ....+.++|.++..+|++++|+..|++++++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--- 72 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-------PL-------VAVYYTNRALCYLKMQQPEQALADCRRALEL--- 72 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 456677777777888888888887777641 11 1345667777777788887777777777643
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. ++..++++..++.+|++
T Consensus 73 ---~p~~~~~~~~l~~--~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 73 ---DGQSVKAHFFLGQ--CQLEMESYDEAIANLQR 102 (137)
T ss_dssp ---CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 4556666666666 67777777777777765
No 155
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.74 E-value=0.00018 Score=63.50 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=103.7
Q ss_pred HHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCc
Q 016262 189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD 268 (392)
Q Consensus 189 ~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~ 268 (392)
.+.-.+..|++++|...+..+. ...+. ....+..++.++..+|++..|+..++.+.+. .+..
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al-------~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~ 109 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAI-------KKNYN-------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA----VPGN 109 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-------HTTCS-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC
T ss_pred HHHHHHHhhcHHHHHHHHHHHH-------HhCcc-------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCc
Confidence 3444677888888888876332 11121 2334455666666889999999888877543 4555
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH--HHHHHHHHHHHHHhcCCH------
Q 016262 269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--VAVSLAKVADVDRSIGNE------ 340 (392)
Q Consensus 269 ~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d--la~sl~~l~~v~~~lg~~------ 340 (392)
..+...+...+..+|.++...|++++|+..|++++++ .+ + .+..+.++|.++..+|+.
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p-------~~~~~~~~~~l~~~~~~~~~~~~~~a~ 175 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TS-------KKWKTDALYSLGVLFYNNGADVLRKAT 175 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CC-------CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778889999999999999999999999998864 12 2 244555666666655555
Q ss_pred --------------HHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcc
Q 016262 341 --------------DVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWN 372 (392)
Q Consensus 341 --------------~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~ 372 (392)
..+...|++|+..+++. ...|.+..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 176 PLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp GGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 45556667777777776 777887766655443
No 156
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.73 E-value=4.3e-06 Score=67.45 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=0.9
Q ss_pred CceeccccccccccC-----------------ceecccCcHhHHHhHHhcC----CCCCCCcCCc
Q 016262 88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~ 131 (392)
..-.|+||++.|.+. .+.++|+|.|+..||.+|. .||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456899999998631 1235899999999999994 4999998643
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.72 E-value=0.00015 Score=72.31 Aligned_cols=137 Identities=12% Similarity=0.053 Sum_probs=100.2
Q ss_pred HHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCC----chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD----DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL 303 (392)
Q Consensus 228 ~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~----~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL 303 (392)
+.....+..++..+...|++..|+..++++.+........ ..++.......+.+++.++..+|++++|+.+|.++|
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4445556667777768999999999999887765543211 122344556788999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhh
Q 016262 304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~ 383 (392)
++. +. -+..+.++|.++..+|++++|+..|+++++ ..|.+......++. ++..++++.
T Consensus 345 ~~~-------p~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~------l~P~~~~a~~~l~~--~~~~~~~~~ 402 (457)
T 1kt0_A 345 GLD-------SA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLE------VNPQNKAARLQISM--CQKKAKEHN 402 (457)
T ss_dssp HHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TC----CHHHHHHH--HHHHHHHHH
T ss_pred hcC-------Cc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHH--HHHHHHHHH
Confidence 752 22 156788999999999999999999999884 46666666767776 666676665
Q ss_pred ccc
Q 016262 384 NQL 386 (392)
Q Consensus 384 ~~l 386 (392)
++.
T Consensus 403 ~a~ 405 (457)
T 1kt0_A 403 ERD 405 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.72 E-value=0.00011 Score=63.67 Aligned_cols=109 Identities=9% Similarity=-0.016 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch-h-----hHHHHHHHHHHHHHHhcCCHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ-V-----LDVAVSLAKVADVDRSIGNEDVAVD 345 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~-~-----~dla~sl~~l~~v~~~lg~~~~A~~ 345 (392)
.......+..+|..+...|++++|+..|.+++++... .+..... . .-.+..+.++|.++..+|++++|+.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 109 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH----TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3445667889999999999999999999999875322 1110000 0 0023667889999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 346 GFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 346 ~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|++++++ .|........++. ++..++++.+|+.+|++|
T Consensus 110 ~~~~al~~------~p~~~~~~~~lg~--~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 110 HASKVLKI------DKNNVKALYKLGV--ANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHH------STTCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHh------CcccHHHHHHHHH--HHHHcccHHHHHHHHHHH
Confidence 99999865 6777777778888 889999999999998864
No 159
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.70 E-value=0.00011 Score=74.36 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
....++.++...|++++|+..|++++++ .+.+ ...+..++.++...|++++|+..|++++++....
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL-------FQYD-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 4556666676777777777777766643 1221 3557889999999999999999999999987776
Q ss_pred hcCCCc-hhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 358 TLKPEE-AGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 358 ~~~~~~-a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
...|.. ......++. .+..++++.+|+.+|++
T Consensus 509 ~~~p~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 509 QSNEKPWAATWANLGH--AYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp CCCSGGGHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH--HHHHhcCHHHHHHHHHH
Confidence 556664 455666666 67777888888777765
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.70 E-value=7.1e-05 Score=61.49 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..++..+...|++++|+..|++++.+ .+.+ ...+.++|.++..+|++++|+..|++++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 80 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML-------DHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGAL---- 80 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----
Confidence 34455566666666666666666655532 1211 23344556666666666666666666553
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..|.+......++. ++..++++.+|+.+|++
T Consensus 81 --~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 81 --MDINEPRFPFHAAE--CHLQLGDLDGAESGFYS 111 (142)
T ss_dssp --HCTTCTHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred --cCCCCcHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 24455555555555 55556666666555543
No 161
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.70 E-value=0.00011 Score=66.19 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=96.4
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.++......|++..|+.++++..+. .+... ..+..++.++...|++++|+..|+++++.- ..+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~ 71 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAK----KYNSP-------YIYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATK 71 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHT----TCCCS-------TTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----Cchh
Confidence 3444445778888899888877543 22222 256788899999999999999999887521 1111
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
-++..+..+|.++..+|++++|+..|+++++ ..|....+...++. ++..++++.+|+.+|++|
T Consensus 72 ------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 72 ------AKSADFEYYGKILMKKGQDSLAIQQYQAAVD------RDTTRLDMYGQIGS--YFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCTHHHHHHHH--HHHHTTCHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh------cCcccHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 1256678899999999999999999999886 45667777778888 888999999999998864
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.69 E-value=0.00016 Score=56.93 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
...+..+|.++...|++++|+.+|+++++.. +. ....+.++|.++..+|++++|+..|++++++..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 4577889999999999999999999998752 21 145677889999999999999999999998776
Q ss_pred Hh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 356 SL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 356 ~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.. ...+....+...++. .+..++++.+++.+|+++
T Consensus 70 ~~~~~~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGN--SYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HSTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHH--HHHHhccHHHHHHHHHHH
Confidence 53 221112445556666 777888888888888753
No 163
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.68 E-value=0.00019 Score=66.81 Aligned_cols=135 Identities=10% Similarity=0.094 Sum_probs=93.5
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL-----SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV 310 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l-----~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~ 310 (392)
.++.++...|++..|+.+++...+. .+........+ ....-.++.++...|++++|+..|++++++.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 264 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---- 264 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence 3444555677777777777766433 22222211111 1123345888889999999999999888642
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 311 ~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+... ......+..+|.++..+|++++|+..|++++++ .|....+...++. ++..++++.+|+.+|+
T Consensus 265 ---~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 265 ---PSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDRAE--AYLIEEMYDEAIQDYE 330 (359)
T ss_dssp ---CSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred ---CCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 2211 123344667899999999999999999998865 6777777778888 8888999999999887
Q ss_pred cC
Q 016262 391 SA 392 (392)
Q Consensus 391 ~~ 392 (392)
+|
T Consensus 331 ~a 332 (359)
T 3ieg_A 331 AA 332 (359)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 164
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.68 E-value=0.00023 Score=62.59 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=66.6
Q ss_pred cccchhHHHhHHHHHHHHHH---------hCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC
Q 016262 243 AMGDADAAVAYFADSVEFLM---------KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH 313 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~---------~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~ 313 (392)
..|++..|+.+++++.+... .+.... ........++|.++...|++++|+..|++++++ .
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~ 84 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS----EISSKLATELALAYKKNRNYDKAYLFYKELLQK-------A 84 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchh----hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------C
Confidence 67788888888877644311 111100 011222345999999999999999999998865 2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 314 ~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+.+ ...+.++|.++..+|++++|+..|++++++
T Consensus 85 p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 85 PNN-------VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 322 566788999999999999999999998864
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.68 E-value=0.00011 Score=58.94 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~ 358 (392)
.-.+|..+...|++++|+..|++++++ .+.+ +..+..+|.++..+|++++|+..|++++ .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al------~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-------EPER-------EEAWRSLGLTQAENEKDGLAIIALNHAR------M 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH------H
Confidence 456788888999999999999988864 3332 5567789999999999999999999988 4
Q ss_pred cCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 359 LKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 359 ~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..|........++. ++..++++.+|+.+|++|
T Consensus 80 l~P~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 80 LDPKDIAVHAALAV--SHTNEHNANAALASLRAW 111 (121)
T ss_dssp HCTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 57888888888888 899999999999998763
No 166
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.67 E-value=2.7e-05 Score=68.82 Aligned_cols=153 Identities=10% Similarity=0.112 Sum_probs=100.8
Q ss_pred HHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHH
Q 016262 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 192 ~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
..+..|++++|...+.... ...+.. ...+..++..+...|++..|+.+++...+. ....
T Consensus 32 ~~~~~~~~~~A~~~~~~~l-------~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~--- 90 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAI-------EENKED-------AIPYINFANLLSSVNELERALAFYDKALEL----DSSA--- 90 (243)
T ss_dssp ----------CCTTHHHHH-------TTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred HHHHhhCHHHHHHHHHHHH-------HhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc---
Confidence 4567778888877775332 112222 223344455555788888888888877544 2211
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
......++.++...|++++|+..|++++++. +.. ...+..+|.++..+|++++|+..|++++
T Consensus 91 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 91 ----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3467788999999999999999999988752 211 3456778999999999999999999988
Q ss_pred HHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 352 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
++ .|....+...++. .+..++++.+++.+|++
T Consensus 153 ~~------~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 153 EL------NENDTEARFQFGM--CLANEGMLDEALSQFAA 184 (243)
T ss_dssp HH------CTTCHHHHHHHHH--HHHHHTCCHHHHHHHHH
T ss_pred Hh------CCccHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 54 4556666666666 77788888888888875
No 167
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.66 E-value=0.00015 Score=64.55 Aligned_cols=159 Identities=11% Similarity=-0.031 Sum_probs=107.7
Q ss_pred HHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCC
Q 016262 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 188 c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+.-.+..|++++|...+..... ..+... ..+..++..+...|++.+|+.+++.... . +.
T Consensus 76 ~la~~~~~~~~~~~A~~~~~~a~~-------~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~----~-~~ 136 (252)
T 2ho1_A 76 ALAVVFQTEMEPKLADEEYRKALA-------SDSRNA-------RVLNNYGGFLYEQKRYEEAYQRLLEASQ----D-TL 136 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHTT----C-TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-------HCcCcH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHh----C-cc
Confidence 334445678888888888864422 122222 2333444555567888888888876644 1 11
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016262 268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347 (392)
Q Consensus 268 ~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~ 347 (392)
..........++.++...|++++|+..|++++++. +.. ...+..++.++..+|++++|+..|
T Consensus 137 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-------~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 137 ----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQ-------PSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11123567889999999999999999999988652 221 445678899999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 348 QEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 348 ~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+++++ ..|........+.. ++..++++.+++.+|++
T Consensus 199 ~~~~~------~~~~~~~~~~~~~~--~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 199 DLFAQ------GGGQNARSLLLGIR--LAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHT------TSCCCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHH------hCcCcHHHHHHHHH--HHHHccCHHHHHHHHHH
Confidence 98763 45555555555555 67777888888877765
No 168
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.65 E-value=1.7e-05 Score=77.49 Aligned_cols=145 Identities=10% Similarity=-0.039 Sum_probs=98.4
Q ss_pred HhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccc-hhHHHhHHHHHHHHHHhCCCCchHHH
Q 016262 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGD-ADAAVAYFADSVEFLMKLPMDDLEII 272 (392)
Q Consensus 194 ~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gd-hh~a~~~~e~~~~~~~~L~~~~~e~~ 272 (392)
+..|++++|+..+..+- ...+.+ ...+..++.+...+|+ +.+|+..++++... .+..
T Consensus 108 ~~~g~~~~Al~~~~~al-------~l~P~~-------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~---- 165 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAI-------ELNAAN-------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKN---- 165 (382)
T ss_dssp HHTCCCHHHHHHHHHHH-------HHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTC----
T ss_pred HHCCChHHHHHHHHHHH-------HhCccC-------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCC----
Confidence 45677788887776332 222222 2333444445446775 88888888777543 3323
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
...+.++|.++..+|++++|+..|+++|++ .+.+ ...+.++|.++..+|++++|+..|+++++
T Consensus 166 ---~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-------dP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 166 ---YQVWHHRRVLVEWLRDPSQELEFIADILNQ-------DAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp ---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 246788999999999999999999998864 2221 55678899999999999999999999884
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhh-hcc
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNH-LNQ 385 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~-~~~ 385 (392)
.+|.+......++. ++..++.+ .++
T Consensus 229 ------l~P~~~~a~~~lg~--~l~~l~~~~~eA 254 (382)
T 2h6f_A 229 ------EDVRNNSVWNQRYF--VISNTTGYNDRA 254 (382)
T ss_dssp ------HCTTCHHHHHHHHH--HHHHTTCSCSHH
T ss_pred ------hCCCCHHHHHHHHH--HHHHhcCcchHH
Confidence 46677766666666 55553333 444
No 169
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.64 E-value=0.00017 Score=73.02 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=96.4
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP 317 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~ 317 (392)
+..|...|++.+|+.+++...+. .+.. ...+..++.++...|++++|+..|++++++..+. ...+
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~p 512 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYAL----FQYD-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT----QSNE 512 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS----CCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc----ccch
Confidence 34555666777777777655432 2222 2457899999999999999999999999875532 1111
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 318 ~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
. ..+..+..++.++..+|++++|+..|++++++ .|.+......++. .+..++++.+|+.+|+++
T Consensus 513 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 513 K---PWAATWANLGHAYRKLKMYDAAIDALNQGLLL------STNDANVHTAIAL--VYLHKKIPGLAITHLHES 576 (597)
T ss_dssp G---GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SSCCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred h---hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHH--HHHHhCCHHHHHHHHHHH
Confidence 1 23567889999999999999999999998854 4777777777877 888999999999988764
No 170
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.64 E-value=0.00035 Score=64.28 Aligned_cols=166 Identities=13% Similarity=0.078 Sum_probs=98.9
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
++..+...+..|++++|...+..... ..+... ..+..++..+...|++..|+.+++...+. .
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~ 85 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQ-------AAPERE-------EAWRSLGLTQAENEKDGLAIIALNHARML----D 85 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH-------hCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C
Confidence 34555567889999999988864322 122222 22333445555678888888888776544 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------------------------
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD------------------------------------- 308 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~------------------------------------- 308 (392)
+.. ...+..++.++...|++++|+..|++++++...
T Consensus 86 ~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 86 PKD-------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHH
T ss_pred cCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 222 235677888888888888888888887753111
Q ss_pred -----HhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhh
Q 016262 309 -----AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 309 -----~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~ 383 (392)
+....+. ....+..+|.++..+|++++|+..|++++++ .|........++. ++..++++.
T Consensus 159 ~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~--~~~~~~~~~ 223 (327)
T 3cv0_A 159 TLLHAALEMNPN-------DAQLHASLGVLYNLSNNYDSAAANLRRAVEL------RPDDAQLWNKLGA--TLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHSTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHhhCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCcHHHHHHHHH--HHHHcCCHH
Confidence 1111111 1344556778888888888888888777643 3344444444444 444555555
Q ss_pred ccccchhc
Q 016262 384 NQLPKFRS 391 (392)
Q Consensus 384 ~~l~~~~~ 391 (392)
+++.+|++
T Consensus 224 ~A~~~~~~ 231 (327)
T 3cv0_A 224 EALDAYNR 231 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 171
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.61 E-value=0.00026 Score=61.30 Aligned_cols=128 Identities=10% Similarity=-0.051 Sum_probs=95.5
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++..+...|++..|+.+++...+.. +.. ......++.++...|++++|+..|++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------ 72 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD----PKN-------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK------ 72 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC----ccc-------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------
Confidence 33444555557788888888887765432 222 2467889999999999999999999988652
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~l-g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+. ....+..+|.++..+ |++++|+..|+++++ ....|....+...++. .+..++++.+++.+|++
T Consensus 73 -~~-------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 73 -PD-------SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGI--CSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp -TT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred -CC-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 21 145677889999999 999999999999886 3345565666667776 77788888888888875
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.61 E-value=0.00065 Score=65.73 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=99.0
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP-----MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR 306 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~-----~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~ 306 (392)
..+..++..+...|++..|+..++.+.+...... .....+.......+.+++.++..+|++++|+.+|+++|++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 3455566666688999999999998877544321 0001135556778999999999999999999999998864
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccc
Q 016262 307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQL 386 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l 386 (392)
.+. .+..+.++|.++..+|++++|+..|++++++ .|.+..+...+.. ++..++++.++.
T Consensus 303 ------~p~-------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~--~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 ------DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLK--VKQKIKAQKDKE 361 (370)
T ss_dssp ------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred ------Cch-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 222 2567889999999999999999999998854 5677777777776 666776666543
No 173
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.60 E-value=1.5e-05 Score=66.59 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK 360 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~ 360 (392)
.||.++...|++++|+..|++++..-.+. ....-.+|.++..+|++++|+..|+++++ .+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~--------------~~~~~~la~~y~~~~~~~~A~~~~~~al~------~~ 61 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK--------------SIKGFYFAKLYYEAKEYDLAKKYICTYIN------VQ 61 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH--------------HTTHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hC
Confidence 46777777788888888888776543331 22345689999999999999999999984 47
Q ss_pred CCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 361 PEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 361 ~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
|.++.....++. ++..++++.+|+.+|++|
T Consensus 62 p~~~~a~~~lg~--~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 62 ERDPKAHRFLGL--LYELEENTDKAVECYRRS 91 (150)
T ss_dssp TTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH--HHHHcCchHHHHHHHHHH
Confidence 888888999999 999999999999999864
No 174
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.60 E-value=0.00039 Score=62.47 Aligned_cols=120 Identities=12% Similarity=0.023 Sum_probs=83.1
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..+++..|+.++++..+. .... .......+..+|.++...|++++|+..|++++++ .+.
T Consensus 17 ~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~------- 75 (275)
T 1xnf_A 17 PTLQQEVILARMEQILAS----RALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-------RPD------- 75 (275)
T ss_dssp CCHHHHHHHHHHHHHHTS----SCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC-------
T ss_pred ccchHHHHHHHHHHHHhc----cccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------CCC-------
Confidence 456667777777655432 1111 2334567888999999999999999999988875 121
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
....+..+|.++..+|++++|+..|++++++ .|........++. ++..++++.+++.+|++
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGI--ALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CccccHHHHHHHH--HHHHhccHHHHHHHHHH
Confidence 1445677788888888888888888887754 4555666666666 67777777777777765
No 175
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.60 E-value=0.00012 Score=63.78 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=92.9
Q ss_pred cccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016262 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~ 318 (392)
......|++..|+.+++++ +.. . ...+.++|.++...|++++|+.+|++++++. +.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a------~~~-~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~--- 69 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV------QDP-H-------SRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KH--- 69 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS------SSC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT---
T ss_pred HHHHHhCCHHHHHHHHHHH------cCC-C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cc---
Confidence 3334667777777777644 221 1 2478899999999999999999999998762 21
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------cCCCchhHHHhhcchhHHHHHHhhhccccc
Q 016262 319 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT----------LKPEEAGLEQRCWNSSTTNFQKNHLNQLPK 388 (392)
Q Consensus 319 ~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~----------~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~ 388 (392)
.+..+.++|.++..+|++++|+..|++++++...-. ..|........++. ++..++++.+|+.+
T Consensus 70 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 70 ----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF--MYAKKEEWKKAEEQ 143 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH--HHHHTTCHHHHHHH
T ss_pred ----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH--HHHHccCHHHHHHH
Confidence 256678999999999999999999999987544322 34445566777777 88888999999988
Q ss_pred hhcC
Q 016262 389 FRSA 392 (392)
Q Consensus 389 ~~~~ 392 (392)
|++|
T Consensus 144 ~~~a 147 (213)
T 1hh8_A 144 LALA 147 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.59 E-value=8.1e-05 Score=74.18 Aligned_cols=113 Identities=10% Similarity=0.011 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC-CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~-~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
.......+.++|.++...|++++|+..|.+++++.........+. .......+..+.++|.++..+|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445667889999999999999999999999998643310000000 0011134677889999999999999999999999
Q ss_pred HHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 351 IKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 351 l~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++ .|.++....+++. .+..++++.+|+.+|++|
T Consensus 344 l~~------~p~~~~a~~~~g~--a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 344 LGL------DSANEKGLYRRGE--AQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHH------STTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred Hhc------CCccHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 854 6778888888888 899999999999999864
No 177
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.59 E-value=0.00011 Score=67.73 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=107.5
Q ss_pred HhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHH
Q 016262 194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH 273 (392)
Q Consensus 194 ~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~ 273 (392)
+..|++++|...+.... ...+.. ...+..++.++...|++..|+.+++...+. .+..
T Consensus 149 ~~~~~~~~A~~~~~~~~-------~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~----- 205 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAAL-------EMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVEL----RPDD----- 205 (327)
T ss_dssp TSHHHHHHHHHHHHHHH-------HHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-----
T ss_pred HHcccHHHHHHHHHHHH-------hhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCc-----
Confidence 45567777776665322 212222 223344555555788888888888877543 2222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
......++.++...|++++|+..|++++++. +. ....+..+|.++..+|++++|+..|++++++
T Consensus 206 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 206 --AQLWNKLGATLANGNRPQEALDAYNRALDIN-------PG-------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2467899999999999999999999988652 21 1446778899999999999999999999977
Q ss_pred HHHhhcCCC------chhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 354 LESLTLKPE------EAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 354 le~l~~~~~------~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
......... .......++. ++..++++..++.+|++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 270 QVGGTTPTGEASREATRSMWDFFRM--LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTSCC-----CCTHHHHHHHHHHH--HHHHTTCHHHHHHHTTCC
T ss_pred CCccccccccchhhcCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Confidence 544311111 4455566666 778888888888888764
No 178
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.58 E-value=0.0005 Score=56.70 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.....+..+|.++...|++++|+..|++++++. +. -...+.++|.++..+|++++|+..|++++++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-------PS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445678899999999999999999999998752 21 1556788999999999999999999998865
Q ss_pred HHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 354 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 354 le~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|........++. ++..++++.+|+.+|++|
T Consensus 77 ------~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 77 ------DKKYIKGYYRRAA--SNMALGKFRAALRDYETV 107 (166)
T ss_dssp ------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHHH--HHHHhccHHHHHHHHHHH
Confidence 5666777777777 888889999999888763
No 179
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.58 E-value=0.00023 Score=65.91 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+..|++++++ .+. .+..+.++|.++..+|++++|+..|++++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al----- 65 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRAL----- 65 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----
Confidence 45677888888888888888888888765 222 14567788888888888888888888876
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...|.+......++. ++..++++.+|+.+|++|
T Consensus 66 -~~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 66 -ELDGQSVKAHFFLGQ--CQLEMESYDEAIANLQRA 98 (281)
T ss_dssp -TSCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred -HhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 456777777777777 788888888888887753
No 180
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.57 E-value=0.00066 Score=53.06 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
...+..++.++...|++++|+..|++++.+ .+.. ...+..+|.++..+|++++|+..|++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 75 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-------NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI-- 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc--
Confidence 345555666666666666666666665543 1110 333455556666666666666666655532
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. ++..++++.+++.+|++
T Consensus 76 ----~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 76 ----DPAYSKAYGRMGL--ALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp ----CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ----CccCHHHHHHHHH--HHHHhCCHHHHHHHHHH
Confidence 3344444444444 55555555555555543
No 181
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.57 E-value=0.00031 Score=68.27 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=99.1
Q ss_pred HhHHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCC
Q 016262 186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 186 l~c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+...+...++.|++++|...+..... ..+.. ...+..++..+...|++..|+.+++...+. .
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~-------~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~ 90 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVD-------GDPDN-------YIAYYRRATVFLAMGKSKAALPDLTKVIQL----K 90 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCcc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----C
Confidence 34445567889999999998874432 12222 223344455555788888999888877544 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCC---chhhHH-----HHHHHHHHHHHHhc
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP---SQVLDV-----AVSLAKVADVDRSI 337 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~---~~~~dl-----a~sl~~l~~v~~~l 337 (392)
+.. ......++.++...|++++|+..|++++++ .+... .....+ ......+|.++...
T Consensus 91 p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 91 MDF-------TAARLQRGHLLLKQGKLDEAEDDFKKVLKS-------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 356788999999999999999999988753 11111 111111 11233446667777
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 338 GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 338 g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
|++++|+..|++++++ .|....+...++. ++..++++.+++.+|+
T Consensus 157 ~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEV------CVWDAELRELRAE--CFIKEGEPRKAISDLK 201 (450)
T ss_dssp TCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCGGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHh------CCCChHHHHHHHH--HHHHCCCHHHHHHHHH
Confidence 7777777777776642 3344444444444 4445555555555544
No 182
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.57 E-value=0.00022 Score=56.47 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..++.++...|++++|+..|++++++ .+.. ...+.++|.++..+|++++|+..|++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 79 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR-------NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQL--- 79 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT-------CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 45566666666667777777666666543 1111 334556666666666666666666666643
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. ++..++++.+++.+|++
T Consensus 80 ---~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 80 ---EPTFIKGYTRKAA--ALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp ---CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ---CCCchHHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 3444455555555 55566666666666554
No 183
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.56 E-value=0.00011 Score=73.18 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=91.6
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.++.++...|++..|+.++++..+. .+... .....++.++...|++++|+..|++++++........
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-- 415 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLK----FPTLP-------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH-- 415 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH--
Confidence 3444555677777777777766543 22222 3567789999999999999999999988764321111
Q ss_pred CCchhhHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhcc
Q 016262 316 VPSQVLDVAVSLAKVADVDRSI----------GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQ 385 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~l----------g~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~ 385 (392)
.. ...+..++.++..+ |++++|+..|++++++ .|........++. ++..++++.+|
T Consensus 416 -----~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~--~~~~~g~~~~A 481 (537)
T 3fp2_A 416 -----VG-IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL------DPRSEQAKIGLAQ--LKLQMEKIDEA 481 (537)
T ss_dssp -----ST-THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHH
T ss_pred -----HH-HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh------CCCCHHHHHHHHH--HHHHhccHHHH
Confidence 11 12234567777777 9999999999988754 6777777777877 88899999999
Q ss_pred ccchhcC
Q 016262 386 LPKFRSA 392 (392)
Q Consensus 386 l~~~~~~ 392 (392)
+.+|++|
T Consensus 482 ~~~~~~a 488 (537)
T 3fp2_A 482 IELFEDS 488 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.55 E-value=4.6e-05 Score=60.42 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~ 368 (392)
+|++++|+..|++++++. .. -.+....+.++|.++..+|++++|+..|++++++ .|.+..+..
T Consensus 3 ~g~~~~A~~~~~~al~~~-------~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG-------LQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSC-------CC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC-------CC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHH
Confidence 567778888888877641 00 0133566778888888889988888888888743 677777777
Q ss_pred hhcchhHHHHHHhhhccccchhcC
Q 016262 369 RCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 369 ~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.++. ++..++++.+|+.+|++|
T Consensus 66 ~l~~--~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 66 FYAM--VLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHH--HHHHcCCHHHHHHHHHHH
Confidence 7777 778888888888877653
No 185
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.54 E-value=0.00077 Score=56.34 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=76.3
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++..+...|++..|+.+++.+.+.. +.. ...+.+++.++..+|++++|+.+|++++++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 75 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA----PAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVD------ 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Confidence 44445555667889999999998776542 222 3568899999999999999999999998762
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
+. ....+.++|.++..+|++++|+..|++++++.
T Consensus 76 -p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 -PK-------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 22 15567889999999999999999999998653
No 186
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00024 Score=54.73 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..++..+...|++++|+..|++++... +.. ...+.++|.++..+|++++|+..|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 67 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--- 67 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh---
Confidence 456677888888888888888888777541 211 345667778888888888888888877754
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|....+...++. ++..++++.+++.+|++
T Consensus 68 ---~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 68 ---KPDWGKGYSRKAA--ALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp ---CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 4555566666666 67777777777777764
No 187
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.53 E-value=0.00014 Score=76.18 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=102.9
Q ss_pred HHhhhchhhHHHHhhhcHH-HHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHH
Q 016262 193 AFRAQNVESAKSRLSLCTE-DIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI 271 (392)
Q Consensus 193 ~~~~g~~~~A~~~l~~c~~-~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~ 271 (392)
++..|++++|...+....+ .+.......+.... .+..++.....+|++.+|+..++++.+.. +..
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~-------~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~--- 466 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDFSESVE-------LPLMEVRALLDLGDVAKATRKLDDLAERV----GWR--- 466 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CCTTCSH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCC---
T ss_pred cccccCHHHHHHHHHHhhhhcccccccccccchh-------HHHHHHHHHHhcCCHHHHHHHHHHHhccC----cch---
Confidence 4677888888777753320 00000012222222 22333444447788888888888775542 222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
...+..+|.++..+|++++|+..|++++++. +.+ ...+.++|.++..+|++++ +..|++++
T Consensus 467 ----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~-------~~~~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 467 ----WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-------PGE-------LAPKLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTC-------SHHHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC-------hHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 3467899999999999999999999988752 222 3345677777788888877 77777776
Q ss_pred HHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 352 KRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 352 ~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..+|..+....+++. ++..++++.+|+.+|++|
T Consensus 528 ------~~~P~~~~a~~~lg~--~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 528 ------STNDGVISAAFGLAR--ARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp ------HHCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHTS
T ss_pred ------HhCCchHHHHHHHHH--HHHHcCCHHHHHHHHHhh
Confidence 346667767777777 777777777777777764
No 188
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.53 E-value=0.00019 Score=71.47 Aligned_cols=94 Identities=10% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..++.++...|++++|+..|++++++ .+.. ...+..+|.++..+|++++|+..|++++++
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 373 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPEN-------VYPYIQLACLLYKQGKFTESEAFFNETKLK--- 373 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 35667777777777777777777777653 1221 234667888888888888888888887754
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|....+...++. ++..++++.+|+.+|++|
T Consensus 374 ---~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 374 ---FPTLPEVPTFFAE--ILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp ---CTTCTHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred ---CCCChHHHHHHHH--HHHHhCCHHHHHHHHHHH
Confidence 5677777777777 888888999999888764
No 189
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.52 E-value=0.00033 Score=65.16 Aligned_cols=160 Identities=17% Similarity=0.056 Sum_probs=104.3
Q ss_pred HHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCC---Cc
Q 016262 192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM---DD 268 (392)
Q Consensus 192 ~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~---~~ 268 (392)
-.+..|++++|...+..... ..+.. ...+..++..+...|++..|+.+++.... +.+ ..
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~-------~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ 107 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIA-------LKMDF-------TAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEE 107 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-------HCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH-------hCCCc-------chHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccCh
Confidence 35566777777766653321 11212 22344455555577888888877776532 222 22
Q ss_pred hHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHH
Q 016262 269 LEIIHTL-----SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA 343 (392)
Q Consensus 269 ~e~~~~l-----~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A 343 (392)
......+ ......++.++...|++++|+..|++++++ .+.. ...+..+|.++..+|++++|
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-------CVWD-------AELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCc-------hHHHHHHHHHHHHCCCHHHH
Confidence 2222222 122344578888999999999999988764 2221 45577889999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 344 VDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 344 ~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+..|++++ ...|........++. ++..++++.+++.+|++
T Consensus 174 ~~~~~~~~------~~~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 174 ISDLKAAS------KLKSDNTEAFYKIST--LYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHH------TTCSCCHHHHHHHHH--HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHH------HhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 99888877 346777777777777 78888888888888765
No 190
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00022 Score=57.70 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
...+..++..+...|++++|+..|++++++ .+.. .+....+.++|.++..+|++++|+..|++++++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 94 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-- 94 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 346678888888889999999988887753 1211 123566778888899999999999988888754
Q ss_pred HhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 356 SLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|........++. ++..++++.+++.+|++|
T Consensus 95 ----~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 95 ----DGGDVKALYRRSQ--ALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp ----TSCCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred ----CccCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 5666666667777 777888888888887753
No 191
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.00034 Score=63.54 Aligned_cols=86 Identities=15% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhccccccccc----ccchhHHHhHHHHHHHHHHhCC
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA----MGDADAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~----~gdhh~a~~~~e~~~~~~~~L~ 265 (392)
+.-.+..|++++|...+....+ +.... .+..++.++.. .+++.+|+.+++.+.+. .
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~---------~~~~~-------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~ 72 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACD---------LKENS-------GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N 72 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---------TTCHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHhCCCHHHHHHHHHHHHH---------CCCHH-------HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C
Confidence 3445677889998888864432 11111 22223333323 56666676666655432 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLN 304 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~----~g~l~~A~~~~e~aL~ 304 (392)
-......+|.++.. .+++++|+.+|+++++
T Consensus 73 ---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 ---------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 12345566666666 6666666666666654
No 192
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00016 Score=71.26 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=92.2
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.++..+...|++..|+.+++...+.. +... ..+..++.++...|++++|+..|++++++.... ..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~ 407 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF----PEAP-------EVPNFFAEILTDKNDFDKALKQYDLAIELENKL----DG 407 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS----TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS----SS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc----ccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc----ch
Confidence 34445557788888888887765431 2111 356788999999999999999999998764331 11
Q ss_pred CCchhhHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 316 VPSQVLDVAVSLAKVADVDRS---IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~---lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
. ...+..+.++|.++.. +|++++|+..|++++++ .|........++. ++..++++.+|+.+|++|
T Consensus 408 ~----~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 408 I----YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------DPRSEQAKIGLAQ--MKLQQEDIDEAITLFEES 475 (514)
T ss_dssp C----SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------CcccHHHHHHHHH--HHHHhcCHHHHHHHHHHH
Confidence 0 0113356788889999 99999999999888754 4566666666666 777888888888888753
No 193
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.45 E-value=0.00018 Score=65.34 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=61.3
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~----~g~l~~A~~~~e~aL~i~~~ 308 (392)
.+..++..+...+++.+|+.+++.+.+ . .. ..+...+|.++.. .+++++|+.+|+++++.-
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~----~--~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD----L--KE-------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-- 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----T--TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----C--CC-------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--
Confidence 334455555567888889988887765 1 11 1467889999999 999999999999988641
Q ss_pred HhhcCCCCCchhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016262 309 AVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK 352 (392)
Q Consensus 309 ~~~~~~~~~~~~~dla~sl~~l~~v~~~----lg~~~~A~~~~~~al~ 352 (392)
-...+.++|.++.. .|++++|+..|+++++
T Consensus 73 --------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 --------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp --------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 03344555555555 5666666666655553
No 194
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.44 E-value=0.00051 Score=60.29 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh-----cCCCCCchhhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK-----RHSNVPSQVLDVAVSL-AKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~-----~~~~~~~~~~dla~sl-~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
+-..|......|++++|+..|++++++.-.... ..... ..+...+ .++|.++..+|++++|+..|+++++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN----SEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch----hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445677778899999999999999986432110 00111 1222222 3489999999999999999999884
Q ss_pred HHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 353 RLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 353 ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+|.+......++. ++..++++.+|+.+|++|
T Consensus 83 ------~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 83 ------KAPNNVDCLEACAE--MQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp ------HCTTCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred ------HCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 57888888888888 888999999999988764
No 195
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.43 E-value=0.0029 Score=49.23 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=80.4
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~ 311 (392)
..+..++..+...|++..|+.+++..... .+.. ......++.++...|++++|+.+|++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 75 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI------ 75 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence 34445555665788888899888877554 1212 346788999999999999999999998875
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
.+.. ...+..+|.++..+|++++|+..|++++++ .|........++.
T Consensus 76 -~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 76 -DPAY-------SKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKI 122 (131)
T ss_dssp -CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHH
T ss_pred -CccC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHH
Confidence 2221 456778899999999999999999998854 4555555555544
No 196
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.43 E-value=0.00083 Score=52.53 Aligned_cols=120 Identities=20% Similarity=0.308 Sum_probs=82.6
Q ss_pred cccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016262 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~ 318 (392)
..+...|++..++.+++..... .... ......++.++...|++++|+..|++++.+. +.
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~--- 67 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALEL----DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PR--- 67 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT---
T ss_pred HHHHHcCcHHHHHHHHHHHHHc----CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CC---
Confidence 3334567777888877766443 1211 2356778888888999999999999887641 11
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 319 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 319 ~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
....+..++.++..+|++++|+..|++++++ .|........++. .+..++++.+++.+|++
T Consensus 68 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 68 ----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGN--AYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHTTTCHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHH--HHHHHccHHHHHHHHHH
Confidence 1345667889999999999999999888754 3444444555555 66667777777777764
No 197
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.42 E-value=0.0011 Score=51.35 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..++.++...|++++|+..|++++... +.. ...+..++.++..+|++++|+..|++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 72 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--- 72 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---
Confidence 345566666666777777777776665431 111 234455666666667777666666666543
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. ++..++++.+++.+|++
T Consensus 73 ---~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 73 ---DPNNAEAWYNLGN--AYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp ---CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ---CCccHHHHHHHHH--HHHHhcCHHHHHHHHHH
Confidence 3344444444444 55555566666655543
No 198
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.39 E-value=0.00052 Score=54.35 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016262 280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 280 ~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~ 359 (392)
-.++..+...|++++|+..|+++++. .+.+. .....+-++|.++..+|++++|+..|++++++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~------ 68 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL-------YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSR------ 68 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------
Confidence 34455555556666666555554432 11111 11233445555555666666665555555432
Q ss_pred CCCc---hhHHHhhcchhHHHHHHhhhccccchh
Q 016262 360 KPEE---AGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 360 ~~~~---a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
.|.. ......++. .+..++++.+++.+|+
T Consensus 69 ~p~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 69 YPTHDKAAGGLLKLGL--SQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp CTTSTTHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 2222 333444444 4445555555555554
No 199
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.39 E-value=0.00045 Score=57.40 Aligned_cols=98 Identities=15% Similarity=-0.006 Sum_probs=74.6
Q ss_pred hhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh
Q 016262 232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 232 ~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~ 311 (392)
..+..++......|++.+|+..++..... .+... ..+..+|.++..+|++++|+..|++++.+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l------ 84 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDS-------RFFLGLGACRQAMGQYDLAIHSYSYGAVM------ 84 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34444555555788999999888766443 33332 45678999999999999999999998875
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016262 312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 312 ~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~il 354 (392)
.+.+ ...+.++|.++..+|++++|+..|++++++.
T Consensus 85 -~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 -DIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2332 3456788999999999999999999998654
No 200
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.38 E-value=0.0011 Score=54.15 Aligned_cols=98 Identities=20% Similarity=0.086 Sum_probs=73.7
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++......|++.+|+.+++..... .+... ..+..+|.++...|++++|+..|++++.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 81 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML----DHYDA-------RYFLGLGACRQSLGLYEQALQSYSYGALM------- 81 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh----CCccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------
Confidence 3334455555788889999888766543 33332 35678999999999999999999998875
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
.+.+ ...+.++|.++..+|++++|+..|++++++.-
T Consensus 82 ~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2332 23467889999999999999999999987653
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.38 E-value=0.00037 Score=59.21 Aligned_cols=90 Identities=17% Similarity=0.046 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHh-hcCCCchhHHHh
Q 016262 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED---VAVDGFQEAIKRLESL-TLKPEEAGLEQR 369 (392)
Q Consensus 294 ~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~---~A~~~~~~al~ile~l-~~~~~~a~l~~~ 369 (392)
+....|+++++..+.+++..+.. +..+.++|.++..+|+++ .|+..+++|+..+++. ...|..+....+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 34456667777777777777764 456677777777776553 6677777888877776 889999999999
Q ss_pred hcchhHHHHH-----------HhhhccccchhcC
Q 016262 370 CWNSSTTNFQ-----------KNHLNQLPKFRSA 392 (392)
Q Consensus 370 ~~~~~~~~~l-----------~~~~~~l~~~~~~ 392 (392)
+++ .|..+ +++.+|+.+|++|
T Consensus 86 LG~--ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 86 IGN--AYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp HHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 999 88777 4899999999975
No 202
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.34 E-value=0.0019 Score=50.41 Aligned_cols=101 Identities=14% Similarity=0.200 Sum_probs=75.6
Q ss_pred cccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016262 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~ 314 (392)
..++..+...|++..|+.+++.+.... +.. ......++.++...|++++|+.+|++++++....
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----- 71 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD----PTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----- 71 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC----Ccc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----
Confidence 344455557788888998888775542 212 2467889999999999999999999999875431
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 315 ~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
......+...+.++|.++..+|++++|+..|++++++
T Consensus 72 --~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 72 --REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1112234667788999999999999999999998864
No 203
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.32 E-value=0.00058 Score=65.06 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=77.7
Q ss_pred HhhhcccccccccccchhHHHhHHHHHHHHHHhC-----CCCc-hHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKL-----PMDD-LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 231 ~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L-----~~~~-~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
...+...+..+...|++..|+..++.+....... .... ..........+.+++.++..+|++++|+.+|+++|+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445566666668899999999988875542110 0000 011111224788999999999999999999999987
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 305 i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
+ .+. -+..+.++|.++..+|++++|+..|++++++ .|.+..+...+..
T Consensus 259 ~-------~p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~ 306 (338)
T 2if4_A 259 E-------EEK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRA 306 (338)
T ss_dssp H-------CTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred h-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHH
Confidence 5 222 1566889999999999999999999998744 3444444444443
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.32 E-value=0.00029 Score=67.14 Aligned_cols=112 Identities=12% Similarity=-0.008 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC-CCC-CchhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH-SNV-PSQVLD-VAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 273 ~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~-~~~-~~~~~d-la~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
......+..+|..+...|++++|+..|++++.+......-. ... ...... ....+.++|.++..+|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33456788999999999999999999999998643321000 000 000000 113677899999999999999999999
Q ss_pred HHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 350 AIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 350 al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+++ .+|.+.....+++. .+..++++..|+.+|++|
T Consensus 256 al~------~~p~~~~a~~~lg~--a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 256 VLT------EEEKNPKALFRRGK--AKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHH------HCTTCHHHHHHHHH--HHHTTTCHHHHHHHHHHT
T ss_pred HHH------hCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 985 46788888888888 888999999999999875
No 205
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.32 E-value=0.0018 Score=50.87 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=65.1
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
.+|++.+|+.+++.+.+. ... .........++|.++..+|++++|+..|++++++ .+.+
T Consensus 2 ~~g~~~~A~~~~~~al~~----~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~------ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS----GLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------FPNH------ 60 (117)
T ss_dssp -----CCCHHHHHHHHSS----CCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC------
T ss_pred CCCcHHHHHHHHHHHHHc----CCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc------
Confidence 356677778777766432 110 2334567899999999999999999999998866 2322
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...+.++|.++..+|++++|+..|++++++
T Consensus 61 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 61 -QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999854
No 206
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.32 E-value=0.00047 Score=52.52 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+..++.++...|++++|+..|++++++. +.. ...+.++|.++..+|++++|+..|++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---- 69 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINV---- 69 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 34578889999999999999999988652 221 445678899999999999999999998854
Q ss_pred hcCCC--chhHHHhhcchhHHHHH-Hhhhccccchhc
Q 016262 358 TLKPE--EAGLEQRCWNSSTTNFQ-KNHLNQLPKFRS 391 (392)
Q Consensus 358 ~~~~~--~a~l~~~~~~~~~~~~l-~~~~~~l~~~~~ 391 (392)
.|. .......++. ++..+ +++.+++.+|++
T Consensus 70 --~~~~~~~~~~~~l~~--~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 70 --IEDEYNKDVWAAKAD--ALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp --SCCTTCHHHHHHHHH--HHTTCSSCSHHHHHHHHH
T ss_pred --CcccchHHHHHHHHH--HHHHHhCCHHHHHHHHHH
Confidence 455 6666667776 77778 888888888764
No 207
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.30 E-value=0.00055 Score=59.36 Aligned_cols=91 Identities=14% Similarity=0.012 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
....++|.++...|++++|+..|++++ .+. +..+.++|.++..+|++++|+..|++++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---------~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 66 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---------DPH--------SRICFNIGCMYTILKNMTEAEKAFTRSINR--- 66 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---------SCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---------CCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 346788999999999999999998874 111 457789999999999999999999999865
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|........++. .+..++++.+|+.+|++|
T Consensus 67 ---~~~~~~~~~~lg~--~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 67 ---DKHLAVAYFQRGM--LYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp ---CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred ---CccchHHHHHHHH--HHHHcccHHHHHHHHHHH
Confidence 5677777778888 888999999999988764
No 208
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.28 E-value=0.001 Score=59.59 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=86.9
Q ss_pred hhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHH
Q 016262 196 AQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL 275 (392)
Q Consensus 196 ~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l 275 (392)
.|++++|...+.... ....... +.....+..++..+...|++..|+.+++.+.+. .+..
T Consensus 18 ~~~~~~A~~~~~~~~-------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~------- 76 (275)
T 1xnf_A 18 TLQQEVILARMEQIL-------ASRALTD---DERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDM------- 76 (275)
T ss_dssp CHHHHHHHHHHHHHH-------TSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCC-------
T ss_pred cchHHHHHHHHHHHH-------hcccccC---chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCc-------
Confidence 466777777665221 1111111 233445566677776889999999998877654 2222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
......++.++...|++++|+.+|++++++ .+.. ...+.++|.++..+|++++|+..|++++++
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-------DPTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------Cccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 246788999999999999999999999875 2221 356778899999999999999999998864
No 209
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.27 E-value=0.00039 Score=62.88 Aligned_cols=129 Identities=15% Similarity=0.077 Sum_probs=90.1
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
..+......|++..|+..++..... .+... .....+..+|.++..+|++++|+..|++++++. +.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-------p~ 84 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTY----GRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIY-------QI 84 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGG----CSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh----CCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-------CC
Confidence 3444444778888888888765332 22221 124578899999999999999999999888652 22
Q ss_pred CCchhhHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHhhcCCCchhHH-----------------Hhh
Q 016262 316 VPSQVLDVAVSLAKVADVDRS--------IGNEDVAVDGFQEAIKRLESLTLKPEEAGLE-----------------QRC 370 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~--------lg~~~~A~~~~~~al~ile~l~~~~~~a~l~-----------------~~~ 370 (392)
+. .....+-++|.++.. +|++++|+..|++++++ .|...... ..+
T Consensus 85 ~~----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 85 DP----RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR------YPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp CT----THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH------CTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc----hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH------CcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 335667888999998 99999999999988754 33332222 334
Q ss_pred cchhHHHHHHhhhccccchhc
Q 016262 371 WNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 371 ~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+. .+..++++.+|+.+|++
T Consensus 155 a~--~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 155 AR--LYERRELYEAAAVTYEA 173 (261)
T ss_dssp HH--HHHHTTCHHHHHHHHHH
T ss_pred HH--HHHHccCHHHHHHHHHH
Confidence 44 67788888888888875
No 210
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00012 Score=54.88 Aligned_cols=45 Identities=29% Similarity=0.604 Sum_probs=36.9
Q ss_pred Cceeccccccccc-cCceecccC-----cHhHHHhHHhc------CCCCCCCcCCcc
Q 016262 88 GPLSCMICQALLF-ECSKCTPCS-----HVYCKACISRF------KDCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~-~~p~~~~C~-----h~fC~~Ci~~~------~~CP~C~~~~~~ 132 (392)
+...|.||++.+. +.+.++||. |.|...||.+| ..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4578999998764 357889996 99999999999 259999997754
No 211
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.25 E-value=0.0014 Score=60.68 Aligned_cols=130 Identities=7% Similarity=-0.053 Sum_probs=93.6
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN------------ 304 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~------------ 304 (392)
.+......|++..|+.++++.... .+... .....++.++...|++++|+..|++++.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQL----SNQNG-------EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----TTSCH-------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh----CCcch-------hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 333444678888888888776543 23232 4678899999999999999998888643
Q ss_pred ---------------HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc--hhHH
Q 016262 305 ---------------VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE--AGLE 367 (392)
Q Consensus 305 ---------------i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~--a~l~ 367 (392)
..+.++...+.+ ...+.++|.++..+|++++|+..|+++++ .+|.. ....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~-------~~~~~~la~~l~~~g~~~~A~~~l~~~l~------~~p~~~~~~a~ 258 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPED-------AALATQLALQLHQVGRNEEALELLFGHLR------XDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTGGGGHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCcc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh------cccccccchHH
Confidence 122223333332 44567789999999999999999998874 45555 6677
Q ss_pred HhhcchhHHHHHHhhhccccchhcC
Q 016262 368 QRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..++. ++..+++...++..|+++
T Consensus 259 ~~l~~--~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQE--ILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHH--HHHHHCTTCHHHHHHHHH
T ss_pred HHHHH--HHHHcCCCCcHHHHHHHH
Confidence 77777 888899888898888763
No 212
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.25 E-value=8.4e-05 Score=57.18 Aligned_cols=45 Identities=31% Similarity=0.724 Sum_probs=37.5
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhc-----CCCCCCCcCCcccc
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEKIE 134 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~~~ 134 (392)
..|++|.-.+..-.+++||.|.||..|+..| ..||.|+.++..+.
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 3688998877767899999999999999876 35999999887643
No 213
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.25 E-value=0.0046 Score=57.36 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ 368 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~ 368 (392)
.|++++|+..|+++++. .+.+ ...+.++|.++..+|++++|+..|++++ ..+|.++..+.
T Consensus 179 ~~~~~eA~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al------~~~p~~~~~l~ 238 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK-------CSPT-------LLLLNGQAACHMAQGRWEAAEGVLQEAL------DKDSGHPETLI 238 (291)
T ss_dssp TTHHHHHHHHHHHHHHH-------SCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHH
Confidence 36666666666665543 2321 4567778888888888888888888877 34567777666
Q ss_pred hhcchhHHHHHHhhhc-cccchhc
Q 016262 369 RCWNSSTTNFQKNHLN-QLPKFRS 391 (392)
Q Consensus 369 ~~~~~~~~~~l~~~~~-~l~~~~~ 391 (392)
+++. ++..+++... +..|+++
T Consensus 239 ~l~~--~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 239 NLVV--LSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHH--HHHHTTCCHHHHHHHHHH
T ss_pred HHHH--HHHHcCCCHHHHHHHHHH
Confidence 6666 5556666554 3455543
No 214
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.22 E-value=0.00013 Score=73.24 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+.++|.++...|++++|+.+|++++++ .+. .+..+.++|.++..+|++++|+..|++++++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 69 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL--- 69 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 34556677778889999999999999976 222 2677889999999999999999999999854
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+|..+....+++. .+..++++.+|+.+|++|
T Consensus 70 ---~p~~~~~~~~lg~--~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 70 ---DKKYIKGYYRRAA--SNMALGKFRAALRDYETV 100 (477)
T ss_dssp ---CTTCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 7888888888888 999999999999999874
No 215
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.20 E-value=0.00039 Score=70.72 Aligned_cols=94 Identities=18% Similarity=0.150 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+.+|++++++ .+. -...+.++|.++..+|++++|+..|++++++
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 86 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLAL-------HPG-------HPEAVARLGRVRWTQQRHAEAAVLLQQASDA--- 86 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 46788999999999999999999998864 222 1556788999999999999999999999854
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.|.++.....++. ++..++++.+|+.+|++|
T Consensus 87 ---~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 87 ---APEHPGIALWLGH--ALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp ---CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 6777888888888 888999999999998864
No 216
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.20 E-value=0.0014 Score=52.31 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=76.4
Q ss_pred cccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016262 235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 235 ~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~ 314 (392)
..++..+...|++..|+.+++.+.... +.. ...+..+|.++..+|++++|+..|++++++. +
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p 74 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN----PLV-------AVYYTNRALCYLKMQQPEQALADCRRALELD-------G 74 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC----cCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------c
Confidence 344445557888888998888775542 222 3468899999999999999999999988752 2
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 315 ~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
. ....+.++|.++..+|++++|+..|++++++-...
T Consensus 75 ~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 75 Q-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred h-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 2 14567889999999999999999999999887663
No 217
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.19 E-value=0.0026 Score=49.98 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=72.4
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++..+...|++..|+.+++++... .... ......++.++...|++++|+.+|++++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------ 80 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE------ 80 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------
Confidence 3344455555788888888888776432 2222 3467889999999999999999999988752
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+. -...+.++|.++..+|++++|+..|++++++
T Consensus 81 -~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 81 -PT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp -TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 21 1456778899999999999999999998854
No 218
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.15 E-value=0.0013 Score=68.83 Aligned_cols=93 Identities=14% Similarity=-0.058 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..++.++..+|++++|+..|++++++. +.+ +..+.++|.++..+|++++|+..|+++++
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~---- 495 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWR-------WRLVWYRAVAELLTGDYDSATKHFTEVLD---- 495 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 457788999999999999999999988652 221 55678899999999999999999999884
Q ss_pred hhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 357 LTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 357 l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
..|..+.....++. ++..++++.+ +.+|++|
T Consensus 496 --l~P~~~~~~~~lg~--~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 496 --TFPGELAPKLALAA--TAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp --HSTTCSHHHHHHHH--HHHHHTCCCT-TCHHHHH
T ss_pred --hCCCChHHHHHHHH--HHHHcCChHH-HHHHHHH
Confidence 56788888888888 8999999999 9999864
No 219
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.15 E-value=0.00098 Score=56.23 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=77.0
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhH
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD 322 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~d 322 (392)
..|++..|+.+++..... .+... ..+..+|.++...|++++|+.+|++++++. +.+
T Consensus 22 ~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~------ 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA----NPQNS-------EQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GEN------ 77 (177)
T ss_dssp -----CCCCHHHHHHHHH----CCSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSC------
T ss_pred hccCHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------
Confidence 455666666666655432 22222 367788999999999999999999888653 111
Q ss_pred HHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 323 VAVSLAKVADV-DRSIGNE--DVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 323 la~sl~~l~~v-~~~lg~~--~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
...+.++|.+ +...|++ ++|+..|++++++ .|........++. ++..++++.+|+.+|++
T Consensus 78 -~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 78 -AELYAALATVLYYQASQHMTAQTRAMIDKALAL------DSNEITALMLLAS--DAFMQANYAQAIELWQK 140 (177)
T ss_dssp -HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CCCcHHHHHHHHH--HHHHcccHHHHHHHHHH
Confidence 3345667777 7778887 8888888777743 5666666666666 77777888888877765
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.14 E-value=0.0015 Score=50.10 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+.+|++++++ .+.. ...+.++|.++..+|++++|+..|++++++...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET-------DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 46788999999999999999999998875 2322 335778999999999999999999999988765
Q ss_pred h
Q 016262 357 L 357 (392)
Q Consensus 357 l 357 (392)
.
T Consensus 74 ~ 74 (100)
T 3ma5_A 74 E 74 (100)
T ss_dssp H
T ss_pred C
Confidence 4
No 221
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.12 E-value=0.0039 Score=51.70 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=86.0
Q ss_pred cccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016262 239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS 318 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~ 318 (392)
..+...|++..++.+++.... +.+.. ......++.++...|++++|+.+|++++++ .+.
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~--- 74 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYD----ADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD-------APD--- 74 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCC----TTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT---
T ss_pred HHHHHhcCHHHHHHHHHHHHH----hCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC---
Confidence 333355666666666543321 11111 346788999999999999999999998876 121
Q ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 319 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 319 ~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
....+..+|.++..+|++++|+..|++++++ .|....+...++. .+..++++.+++.+|++
T Consensus 75 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 75 ----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA------NPINFNVRFRLGV--ALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcHhHHHHHHHHH--HHHHcCcHHHHHHHHHH
Confidence 1455678899999999999999999998865 5566666666666 77788888888888875
No 222
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.10 E-value=0.0085 Score=43.80 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 276 ~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile 355 (392)
......++.++...|++++|+.+|++++++. +.. ...+.++|.++..+|++++|+..|++++++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-- 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 4567889999999999999999999998652 221 456778999999999999999999998854
Q ss_pred HhhcCCCchhHHHhhcc
Q 016262 356 SLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 356 ~l~~~~~~a~l~~~~~~ 372 (392)
.|........++.
T Consensus 73 ----~p~~~~~~~~l~~ 85 (91)
T 1na3_A 73 ----DPNNAEAKQNLGN 85 (91)
T ss_dssp ----CTTCHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHH
Confidence 4555555554444
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.10 E-value=0.0039 Score=48.43 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT 358 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~ 358 (392)
--.||...+..+++..|+..|+++++..... .. ..+..+..+..+|.++..+|+++.|+.+++++++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~----~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~------ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEG----EI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE------ 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhcc----CC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh------
Confidence 3478999999999999999999999765321 10 1124466788999999999999999999999874
Q ss_pred cCCCchhHHHhhc
Q 016262 359 LKPEEAGLEQRCW 371 (392)
Q Consensus 359 ~~~~~a~l~~~~~ 371 (392)
..|....++.++.
T Consensus 75 l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 75 LDPEHQRANGNLK 87 (104)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCHHHHhhHH
Confidence 5677766655554
No 224
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.0037 Score=50.13 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=71.6
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
.+..+...|++..|+.+++...+ +.+.. ......+.+++.++...|++++|+.+|++++++ .+.+
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~----~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~ 98 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALG----LDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------DGGD 98 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHT----SCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TSCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH----Hcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------CccC
Confidence 34444577888888888876643 22221 224567889999999999999999999998875 2221
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...+.++|.++..+|++++|+..|++++++
T Consensus 99 -------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 -------VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455678899999999999999999998854
No 225
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.01 E-value=0.0042 Score=48.87 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=69.5
Q ss_pred ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~ 319 (392)
.....|++..|+..++...... +... ........+|.++...|++++|+..|+++++.. +.+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~----p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~-- 73 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELY----PNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHD-- 73 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----SSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTST--
T ss_pred HHHHhCCHHHHHHHHHHHHHHC----CCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCc--
Confidence 3446788888888887664432 2111 123467789999999999999999999887642 2221
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.....+.++|.++..+|++++|+..|++++++
T Consensus 74 --~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 --KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp --THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23566788999999999999999999988754
No 226
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.01 E-value=0.0033 Score=48.98 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
....++.++...|++++|+..|+++++. .+.. ...+..++.++...|++++|+..|++++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-------CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----
Confidence 4677889999999999999999998764 1211 445677899999999999999999998754
Q ss_pred hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 358 TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.|........++. .+..++++.+++.+|++
T Consensus 65 --~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 65 --DPRSAEAWYNLGN--AYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp --CTTCHHHHHHHHH--HHHTTTCHHHHHHHHHH
T ss_pred --CCCchHHHHHHHH--HHHHhcCHHHHHHHHHH
Confidence 3445555555555 66667777777777654
No 227
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.01 E-value=0.0021 Score=54.46 Aligned_cols=131 Identities=8% Similarity=0.022 Sum_probs=84.5
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----------HHHhh
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-----------RDAVK 311 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~-----------~~~~~ 311 (392)
..|++..|+..++...+. ...-......++.++...|++++|+..|++++... -....
T Consensus 18 ~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDE-----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HTTCHHHHHHHHHTSCHH-----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH-----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 566777777666544332 22224567888999999999999998887754321 00000
Q ss_pred c-CCCCCchhh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc--hhHHHhhcchhHHHHHH
Q 016262 312 R-HSNVPSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE--AGLEQRCWNSSTTNFQK 380 (392)
Q Consensus 312 ~-~~~~~~~~~--------dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~--a~l~~~~~~~~~~~~l~ 380 (392)
. ........+ +-...+.++|.++..+|++++|+..|++++ ..+|.. ......++. ++..++
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------~~~p~~~~~~a~~~l~~--~~~~~g 158 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL------KVNLGAQDGEVKKTFMD--ILSALG 158 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTTTTTHHHHHHHH--HHHHHC
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH------HhCcccChHHHHHHHHH--HHHHhC
Confidence 0 000000001 113456678999999999999999999876 445443 446667777 888899
Q ss_pred hhhccccchhcC
Q 016262 381 NHLNQLPKFRSA 392 (392)
Q Consensus 381 ~~~~~l~~~~~~ 392 (392)
+..+++..|+++
T Consensus 159 ~~~~A~~~y~~a 170 (176)
T 2r5s_A 159 QGNAIASKYRRQ 170 (176)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 999999988764
No 228
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.94 E-value=0.012 Score=44.76 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=68.8
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
++..+...|++..++.+++.+... .+.. ......++.++...|++++|+..|++++++. +.
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~- 70 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PD- 70 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH----CCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cc-
Confidence 344444678888888888877543 2222 2467888999999999999999999988752 22
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
....+.++|.++..+|++++|+..|+++++
T Consensus 71 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 ------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 145677889999999999999999988873
No 229
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0029 Score=62.07 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.....+..+|..+...|++++|+..|+++++.. +. ...+.++|.++..+|++++|+..|+++++
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~- 67 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-------ED--------PVFYSNLSACYVSVGDLKKVVEMSTKALE- 67 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cc--------HHHHHhHHHHHHHHhhHHHHHHHHHHHhc-
Confidence 345678889999999999999999999988763 22 45678889999999999999999998885
Q ss_pred HHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 354 LESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 354 le~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
..|........++. ++..++++.+|+.+|++
T Consensus 68 -----~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 68 -----LKPDYSKVLLRRAS--ANEGLGKFADAMFDLSV 98 (514)
T ss_dssp -----HCSCCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred -----cChHHHHHHHHHHH--HHHHHhhHHHHHHHHHH
Confidence 36777777777777 88888888888888765
No 230
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.89 E-value=0.015 Score=44.50 Aligned_cols=106 Identities=25% Similarity=0.435 Sum_probs=75.2
Q ss_pred ccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 236 ~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
.++..+...|++..|+.++++.... .+.. ......++.++...|++++|+..|++++++ .+.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~ 75 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALEL----DPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPN 75 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----CcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc
Confidence 3444444678888888888777543 1211 235778899999999999999999998864 121
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 316 ~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
. ...+..++.++..+|++++|+..|++++++ .|........++.
T Consensus 76 ~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~ 119 (125)
T 1na0_A 76 N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGN 119 (125)
T ss_dssp C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH
T ss_pred c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHH
Confidence 1 345678899999999999999999988754 4555544444433
No 231
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0079 Score=45.17 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 281 ~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~-sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
+.+..+...|++++|+..|++++++ .+.. .. .+.++|.++..+|++++|+..|++++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-------EPVG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-------CSST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-------CCCc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4677788889999999999998864 2221 34 6788999999999999999999999854
No 232
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.83 E-value=0.00076 Score=49.54 Aligned_cols=45 Identities=24% Similarity=0.674 Sum_probs=37.5
Q ss_pred CceeccccccccccCceecccCcHhHHHhHHhcC------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
..-.|.||.+++.....+..|+|.|=..||.+|+ .||+|+.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4578999999998666677999999999999994 49999986543
No 233
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.81 E-value=0.0057 Score=46.21 Aligned_cols=97 Identities=20% Similarity=0.091 Sum_probs=71.7
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
.+..++......|++..|+.+++.+.+. .... ......++.++...|++++|+..|++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------ 70 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEE-------SKYWLMKGKALYNLERYEEAVDCYNYVINVI------ 70 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Confidence 3344555555788889999888877543 2222 2356789999999999999999999988651
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIK 352 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~l-g~~~~A~~~~~~al~ 352 (392)
+. ......+.++|.++..+ |++++|+.+|++++.
T Consensus 71 -~~-----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 71 -ED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp -CC-----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred -cc-----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 21 00145678899999999 999999999988763
No 234
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.73 E-value=0.0016 Score=51.94 Aligned_cols=89 Identities=9% Similarity=-0.016 Sum_probs=67.8
Q ss_pred ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ 319 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~ 319 (392)
.....|++.+|+..++.+... .+.. ...+..+|.++...|++++|+..|++++++ .+..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~----~P~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~~--- 84 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQK----EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML-------DPKD--- 84 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---
T ss_pred HHHHcCCHHHHHHHHHHHHHH----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC---
Confidence 334678888888888766543 2322 346788999999999999999999988865 2322
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...+.++|.++..+|++++|+..|++++++
T Consensus 85 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 85 ----IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445678899999999999999999998754
No 235
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.64 E-value=0.0072 Score=46.94 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
..+..+|.++...|++++|+.+|++++++ .+. ....+.++|.++..+|++++|+..|++++++...
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDF-------DPT-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999865 222 1456788999999999999999999999987655
Q ss_pred h
Q 016262 357 L 357 (392)
Q Consensus 357 l 357 (392)
.
T Consensus 86 ~ 86 (115)
T 2kat_A 86 R 86 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 236
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.64 E-value=0.02 Score=50.33 Aligned_cols=170 Identities=13% Similarity=-0.017 Sum_probs=101.3
Q ss_pred HHHHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCC
Q 016262 188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD 267 (392)
Q Consensus 188 c~a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~ 267 (392)
..+...+..|++++|...+..... ..+... .....+.+++......|++..|+..++...+.. +.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~-------~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----P~ 73 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDN-------RYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PT 73 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-------HCTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----cC
Confidence 345567889999999999873321 112111 011234455666667899999998888765432 22
Q ss_pred chHHHHHHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhh--------
Q 016262 268 DLEIIHTLSVSLNKIGDLKYY------------------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-------- 321 (392)
Q Consensus 268 ~~e~~~~l~~~l~~lg~l~~~------------------~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~-------- 321 (392)
... ...++-.+|.++.. .|++++|+..|++.+ +..+.......
T Consensus 74 ~~~----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-------~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 74 HPN----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV-------RGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp CTT----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-------TTCTTCTTHHHHHHHHHHH
T ss_pred CCc----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH-------HHCcCChhHHHHHHHHHHH
Confidence 221 12234444444433 456666666666544 44444432110
Q ss_pred --HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch---hHHHhhcchhHHHHHHhhhccccchhc
Q 016262 322 --DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA---GLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 322 --dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a---~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.++...-.+|.++..+|++.+|+..|++++++ .|... ..+..++. .+..++++..++.+|+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~a~~~l~~--~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD------YPDTQATRDALPLMEN--AYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTSHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------CcCCCccHHHHHHHHH--HHHHcCCcHHHHHHHHH
Confidence 11111234678889999999999999988754 33332 44556666 78888998888888764
No 237
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.63 E-value=0.0034 Score=58.02 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA------ 350 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a------ 350 (392)
..+-.++..+...|++++|+..|+++++. .+.+ +..+..+|.++..+|++++|+..|+++
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL-------SNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 34567888888999999999999988754 3332 445778889999999999999888774
Q ss_pred ---------------------HHHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 351 ---------------------IKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 351 ---------------------l~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
++.++.. ..+|++..+...++. ++...+++..|+..|++
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~--~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLAL--QLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHH--HHHHcccHHHHHHHHHH
Confidence 3344444 778899988888888 88899999999988875
No 238
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.51 E-value=0.008 Score=53.00 Aligned_cols=129 Identities=11% Similarity=0.001 Sum_probs=73.1
Q ss_pred ccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCc-
Q 016262 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS- 318 (392)
Q Consensus 240 ~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~- 318 (392)
.....|++.+|+..++...... +... .....+..+|.++...|++++|+..|++.++. .+.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~----p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-------~P~~~~~ 77 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRY----PFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------NPTHPNI 77 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC----TTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----CCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------CcCCCcH
Confidence 3346788888888887665431 1111 12346788999999999999999999988753 333331
Q ss_pred --hhhHHHHHHHH-----------HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHH-----------------H
Q 016262 319 --QVLDVAVSLAK-----------VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE-----------------Q 368 (392)
Q Consensus 319 --~~~dla~sl~~-----------l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~-----------------~ 368 (392)
..+.++.++.. ++.++..+|++++|+..|++++ ...|...... .
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l------~~~P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV------RGYPNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH------TTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH------HHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 12223333322 2233334566777777666655 4444443221 1
Q ss_pred hhcchhHHHHHHhhhccccchhc
Q 016262 369 RCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 369 ~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.++. .+...+++..|+..|++
T Consensus 152 ~~a~--~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 152 SVAE--YYTERGAWVAVVNRVEG 172 (225)
T ss_dssp HHHH--HHHHHTCHHHHHHHHHH
T ss_pred HHHH--HHHHcCcHHHHHHHHHH
Confidence 1222 45566777777777764
No 239
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.50 E-value=0.002 Score=56.73 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG----DLQAARSYYVRSL 303 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g----~l~~A~~~~e~aL 303 (392)
++..+...+++.+|+.+++.+.+. . . ..+..+||.++.. + ++++|+.+|++++
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~----g--~-------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQ----G--D-------GDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----C--C-------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 333333456666676666655331 1 1 2345666666655 5 6777777777664
No 240
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.32 E-value=0.003 Score=58.68 Aligned_cols=120 Identities=13% Similarity=-0.029 Sum_probs=81.2
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
++.+....|++..|+..++. +... .....++.++..+|++++|+..|++++++. +..
T Consensus 107 la~~~~~~g~~~~Al~~l~~---------~~~~-------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-------p~~ 163 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ---------GDSL-------ECMAMTVQILLKLDRLDLARKELKKMQDQD-------EDA 163 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---------CCSH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred HHHHHHHCCCHHHHHHHHhC---------CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------cCc
Confidence 33444466777777766654 2222 356778889999999999999999887651 221
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 317 ~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
. ...++..+ ..+....|++++|+..|+++++ ..|.++.+...++. .+..++++.+|+.+|++|
T Consensus 164 ~--~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~------~~p~~~~~~~~la~--~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 164 T--LTQLATAW---VSLAAGGEKLQDAYYIFQEMAD------KCSPTLLLLNGQAA--CHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp H--HHHHHHHH---HHHHHCTTHHHHHHHHHHHHHH------HSCCCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred H--HHHHHHHH---HHHHhCchHHHHHHHHHHHHHH------hCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 1 11122111 1223345888888888888774 47888888888888 889999999999998864
No 241
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.25 E-value=0.0045 Score=52.30 Aligned_cols=97 Identities=14% Similarity=-0.037 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 016262 279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK------ 352 (392)
Q Consensus 279 l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~------ 352 (392)
.-.++..+...|++++|+..|++++++.-. -...+..+|.++..+|++++|+..|++++.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~ 74 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS 74 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH
Confidence 456677888899999999999988764321 144567788888888888888877765432
Q ss_pred ---------------------HHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 353 ---------------------RLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 353 ---------------------ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.++.. ...|.+......++. ++..++++.+++.+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~--~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV--QYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcccHHHHHHHHHH
Confidence 22222 456777777777777 78888888888888765
No 242
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.21 E-value=0.031 Score=46.69 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=71.2
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHHH
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGDL--QAARSYYVRSLNVRRDA 309 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l-~~~~g~l--~~A~~~~e~aL~i~~~~ 309 (392)
.+..++.++...|++..|+.+++.+..... .. ......++.+ +...|++ ++|+..|++++++
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---- 110 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRG----EN-------AELYAALATVLYYQASQHMTAQTRAMIDKALAL---- 110 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SC-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh----
Confidence 344455556678899999999887765432 22 2356788888 7788998 9999999988865
Q ss_pred hhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 310 ~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
.+.. ...+..+|.++..+|++++|+..|+++++
T Consensus 111 ---~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 111 ---DSNE-------ITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp ---CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2221 34567889999999999999999999874
No 243
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.04 E-value=0.0072 Score=53.01 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG----NEDVAVDGFQEAI 351 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg----~~~~A~~~~~~al 351 (392)
.+...||.++...+++++|+.+|+++++. +.+.++.+||.++.. | ++++|+.+|+++.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999998752 013344555555555 4 5555555555553
No 244
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0076 Score=45.86 Aligned_cols=61 Identities=8% Similarity=-0.086 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+..+.++|.++..+|++++|+..|++++++ .|..+.+...++. ++..++++.+++.+|++|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAM--ALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHH--HHHHhcCHHHHHHHHHHH
Confidence 456788999999999999999999999854 6777788888888 888999999999988764
No 245
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.95 E-value=0.015 Score=64.89 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=82.1
Q ss_pred cccccccchhHHHhHHHHHHHHH---HhCCCCchHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016262 239 DCCRAMGDADAAVAYFADSVEFL---MKLPMDDLEIIH--------TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR 307 (392)
Q Consensus 239 ~~C~~~gdhh~a~~~~e~~~~~~---~~L~~~~~e~~~--------~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~ 307 (392)
.+|..+|.+.+|..+|+...... ..+-.....+.+ .....+.++|..+...|++++|+..|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 35666777788877777652111 111111111222 12345778899999999999999999764
Q ss_pred HHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------------------h---hcCCCchh
Q 016262 308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES-------------------L---TLKPEEAG 365 (392)
Q Consensus 308 ~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~-------------------l---~~~~~~a~ 365 (392)
.. ...+.+++.+...+|++++|+.+|+.|++..+. + -..+..+.
T Consensus 1132 -------dD-------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad 1197 (1630)
T 1xi4_A 1132 -------DD-------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAH 1197 (1630)
T ss_pred -------CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHH
Confidence 11 445566889999999999999999887754411 1 11222222
Q ss_pred HHHhhcchhHHHHHHhhhccccchhcC
Q 016262 366 LEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 366 l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+. .++. .+...++|..|+.+|++|
T Consensus 1198 ~~-~iGd--~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1198 IQ-QVGD--RCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HH-HHHH--HHHhcCCHHHHHHHHHhh
Confidence 22 2333 666777778888887764
No 246
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.86 E-value=0.0074 Score=46.10 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+.++|.++..+|++++|+..|+++++ ..|........++. .+..++++.+|+.+|++|
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~lg~--~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE------TDPDYVGTYYHLGK--LYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCTHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 45677899999999999999999999985 46777777778888 889999999999998864
No 247
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.86 E-value=0.019 Score=44.47 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...+.++|.++..+|++++|+..|++++++ .|........++. ++..++++.+++.+|++|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGK--TLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 456788999999999999999999998854 5677777777777 888899999999988764
No 248
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.60 E-value=0.24 Score=45.51 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=63.7
Q ss_pred hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHhhcCCCCCchh
Q 016262 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL-------QAARSYYVRSLNVRRDAVKRHSNVPSQV 320 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l-------~~A~~~~e~aL~i~~~~~~~~~~~~~~~ 320 (392)
.+|+..++++... .+...++...+...+...+......|++ ++|+..|+++++. -.+..
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------~~p~~---- 98 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKKN---- 98 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------TTTTC----
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------hCccc----
Confidence 3455555555433 2334444444444443333333456776 5666666665541 12221
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchh-HHHhhcchhHHHHHHhhhccccchhc
Q 016262 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 321 ~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~-l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.....+++.++..+|++++|+..|+++++ ..|.+.. +...++. .+..++++..++..|++
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 99 ---MLLYFAYADYEESRMKYEKVHSIYNRLLA------IEDIDPTLVYIQYMK--FARRAEGIKSGRMIFKK 159 (308)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------SSSSCTHHHHHHHHH--HHHHHHCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------ccccCccHHHHHHHH--HHHHhcCHHHHHHHHHH
Confidence 33456677777888888888888887774 3444443 3334444 44455666666665554
No 249
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.50 E-value=0.0044 Score=48.14 Aligned_cols=31 Identities=19% Similarity=0.538 Sum_probs=26.4
Q ss_pred Cceeccccccc-cccCcee--cccCcHhHHHhHHh
Q 016262 88 GPLSCMICQAL-LFECSKC--TPCSHVYCKACISR 119 (392)
Q Consensus 88 ~~~~C~iC~~~-~~~~p~~--~~C~h~fC~~Ci~~ 119 (392)
+++.|+||.+. +. +++. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCC-CceEECCcCChHHhHHHCHH
Confidence 46889999975 45 7777 99999999999997
No 250
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.35 E-value=0.022 Score=41.49 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
.+..+..+|.++..+|++++|+..|++++++ .|........++. ++..++++.+++.+|++|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGN--AYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHH--HHHHHhhHHHHHHHHHHH
Confidence 3566788999999999999999999999854 5666667777777 888889999999888763
No 251
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.21 E-value=0.036 Score=54.81 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=27.0
Q ss_pred ccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016262 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLN 304 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~----~g~l~~A~~~~e~aL~ 304 (392)
.++..+|+.+++.+.+. . . ......||.++.. .+++++|+.+|+++++
T Consensus 92 ~~~~~~A~~~~~~a~~~----~--~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK----G--L-------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----C--C-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45566677666655321 1 1 1234556666665 5666666666666543
No 252
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.00 E-value=0.79 Score=38.47 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC-----------CHHH
Q 016262 277 VSLNKIGDLKYYGGDL---QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-----------NEDV 342 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l---~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg-----------~~~~ 342 (392)
..+.++|.++..++++ .+|+..+++++...+.+++-.+.. +..+.++|.++..+| ++++
T Consensus 37 ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e 109 (158)
T 1zu2_A 37 DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-------DEAVWCIGNAYTSFAFLTPDETEAKHNFDL 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence 4566777777666554 345566666666666666666654 445666777776664 5566
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHh
Q 016262 343 AVDGFQEAIKRLESLTLKPEEAGLEQR 369 (392)
Q Consensus 343 A~~~~~~al~ile~l~~~~~~a~l~~~ 369 (392)
|+.+|++|+ ...|.+....+.
T Consensus 110 A~~~~~kAl------~l~P~~~~y~~a 130 (158)
T 1zu2_A 110 ATQFFQQAV------DEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHH------HHCTTCHHHHHH
T ss_pred HHHHHHHHH------HhCCCCHHHHHH
Confidence 666666655 556665544433
No 253
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.68 E-value=0.0045 Score=58.44 Aligned_cols=45 Identities=24% Similarity=0.636 Sum_probs=34.8
Q ss_pred CceeccccccccccCce-------ecccCcHhHHHhHHhcC---------------CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSK-------CTPCSHVYCKACISRFK---------------DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~-------~~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~ 132 (392)
+...|+||..++.+... ...|+|.|-..||.+|. .||.|+.+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45789999999774122 23799999999999983 39999987654
No 254
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.65 E-value=0.084 Score=58.97 Aligned_cols=169 Identities=17% Similarity=0.123 Sum_probs=100.7
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHH---HHHhcCCC---hHHHHHH--HhhhcccccccccccchhHHHhHHHHHHHHH
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRD---QIERMGNT---SELCSQL--GAVLGMLGDCCRAMGDADAAVAYFADSVEFL 261 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~---~l~~~~~~---~~~C~~h--~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~ 261 (392)
|.-+...|.+++|...+..+...... .+.....- .+..... ...+..+|..+...|++.+|+..|..+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 44577888889998888766544332 11111110 0122111 334445666666778888888888543
Q ss_pred HhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH---------hhcCCCCCchh---h---HHHHH
Q 016262 262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA---------VKRHSNVPSQV---L---DVAVS 326 (392)
Q Consensus 262 ~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~---------~~~~~~~~~~~---~---dla~s 326 (392)
.. .....+++......|++++|+.+|..+.+..++. ..+. ...... . .. ..
T Consensus 1132 -----dD-------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~fI~~~n~-ad 1197 (1630)
T 1xi4_A 1132 -----DD-------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEFINGPNN-AH 1197 (1630)
T ss_pred -----CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHHHhCCCH-HH
Confidence 11 1244568888999999999999998877654221 0000 000000 0 11 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 327 LAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 327 l~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.++|+.+..+|++++|+.+|..+- .-.+++. ++-.+++++.|++.|++|
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA~--------------ny~rLA~--tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNVS--------------NFGRLAS--TLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhh--------------HHHHHHH--HHHHhCCHHHHHHHHHHh
Confidence 4568999999999999999999862 1223333 556667777777777654
No 255
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.47 E-value=0.059 Score=43.77 Aligned_cols=85 Identities=11% Similarity=-0.007 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHh
Q 016262 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 282 lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~----lg~~~~A~~~~~~al~ile~l 357 (392)
||.++...+.+++|+.+|+++.+. ..+.+..+||.++.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----
Confidence 888888888889999999888753 115677889999888 89999999999998743
Q ss_pred hcCCCchhHHHhhcchhHHHH----HHhhhccccchhcC
Q 016262 358 TLKPEEAGLEQRCWNSSTTNF----QKNHLNQLPKFRSA 392 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~----l~~~~~~l~~~~~~ 392 (392)
.++.....++. .+.. .+++.+++.+|++|
T Consensus 91 ----g~~~a~~~Lg~--~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 91 ----NDQDGCLILGY--KQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp ----TCHHHHHHHHH--HHHHTSSSCCCHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHH--HHHCCCCCCcCHHHHHHHHHHH
Confidence 34444555665 6655 67888888888764
No 256
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.37 E-value=0.64 Score=42.59 Aligned_cols=139 Identities=9% Similarity=0.085 Sum_probs=74.3
Q ss_pred ccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---------H
Q 016262 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR---------D 308 (392)
Q Consensus 238 C~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~---------~ 308 (392)
+......|++..|..+++.+.+ +.+...+ ....+++.+....|++++|+..|+++++.-. .
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 175 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLA----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT----SSSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHh----ccccCcc------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3333356777888888877654 3333321 1567778888888999999999998875310 0
Q ss_pred Hhh----cCCCCCchhhH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC-chhHHHhhcchhH
Q 016262 309 AVK----RHSNVPSQVLD--------VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE-EAGLEQRCWNSST 375 (392)
Q Consensus 309 ~~~----~~~~~~~~~~d--------la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~-~a~l~~~~~~~~~ 375 (392)
..+ ...+.....++ -...+.+++.++..+|++++|+..|++++... ...|. ...+...+.. .
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---~l~p~~~~~l~~~~~~--~ 250 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---SLPPEKSGEIWARFLA--F 250 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---SSCGGGCHHHHHHHHH--H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHH--H
Confidence 000 00000000000 12334455666666777777777777665210 12332 3334444444 4
Q ss_pred HHHHHhhhccccchhc
Q 016262 376 TNFQKNHLNQLPKFRS 391 (392)
Q Consensus 376 ~~~l~~~~~~l~~~~~ 391 (392)
....++...++.++++
T Consensus 251 ~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 251 ESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHSCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5556666666666554
No 257
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.29 E-value=0.024 Score=39.59 Aligned_cols=43 Identities=23% Similarity=0.599 Sum_probs=33.4
Q ss_pred CceeccccccccccCceecccCc-----HhHHHhHHhc------CCCCCCCcCCc
Q 016262 88 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRF------KDCPLCGADIE 131 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~------~~CP~C~~~~~ 131 (392)
+...|.||+.... ++.++||.. .|=..|+.+| ..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4568999998854 677899653 6778899998 35999998764
No 258
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.25 E-value=0.09 Score=48.73 Aligned_cols=128 Identities=16% Similarity=-0.025 Sum_probs=82.4
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHHHHHHHhCCCCch
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~ 269 (392)
+.-....|++++|...+..... .. +.+- .....+.++...+++.+++.+++.. .... ..
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~----------~~----p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a----~~~~--d~ 167 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPV----------AG----SEHL-VAWMKAVVYGAAERWTDVIDQVKSA----GKWP--DK 167 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCC----------TT----CHHH-HHHHHHHHHHHTTCHHHHHHHHTTG----GGCS--CH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh----------cC----CchH-HHHHHHHHHHHcCCHHHHHHHHHHh----hccC--Cc
Confidence 3345678899999988863321 00 1111 2233334565778888888777522 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~ 349 (392)
. .-....-.+|.+...+|++++|+.+|++++. ... .+.. ....+-++|.++..+|+.++|+..|++
T Consensus 168 -~--~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~--~P~~---~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 168 -F--LAGAAGVAHGVAAANLALFTEAERRLTEAND------SPA--GEAC---ARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp -H--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STT--TTTT---HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -c--cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCC--Cccc---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 1234678899999999999999999998751 111 0111 244567889999999999999999998
Q ss_pred HHH
Q 016262 350 AIK 352 (392)
Q Consensus 350 al~ 352 (392)
++.
T Consensus 234 a~a 236 (282)
T 4f3v_A 234 LQT 236 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 259
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.98 E-value=0.04 Score=41.08 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchh-HHHhhcchhHHHHHHhhhccccchhcC
Q 016262 329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 329 ~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~-l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
+.|.++...|++++|+..|+++++ ..|.... +...++. ++..++++.+|+.+|++|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~lg~--~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ------TEPVGKDEAYYLMGN--AYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH------HCSSTHHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH------HCCCcHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 457778889999999999998875 4677777 7777777 888889999999888764
No 260
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=93.79 E-value=0.17 Score=49.91 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=37.5
Q ss_pred ccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016262 244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLN 304 (392)
Q Consensus 244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~----~g~l~~A~~~~e~aL~ 304 (392)
.++...|+.+++.+.+. + . ..+...||.++.. .+++++|+.+|+++++
T Consensus 56 ~~~~~~A~~~~~~a~~~----~--~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----G--Y-------TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC----C--C-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 56778888888877532 1 1 2467889999998 8999999999999875
No 261
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.67 E-value=0.13 Score=50.58 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHHHHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccch---hHHHhHHHHHHHHHHhCCC
Q 016262 190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA---DAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 190 a~~~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdh---h~a~~~~e~~~~~~~~L~~ 266 (392)
+..++++|++++|...+....+ ..+...+..++.++...|+. .+|+.+++.+.+.
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~----------------~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------ 67 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAE----------------LGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------ 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HTCCTGGGTCC-------------------------------
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------
Confidence 4457899999999999874321 01123445566665455555 6666666655422
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q 016262 267 DDLEIIHTLSVSLNKIGDLKYYGG-----DLQAARSYYVRSLN 304 (392)
Q Consensus 267 ~~~e~~~~l~~~l~~lg~l~~~~g-----~l~~A~~~~e~aL~ 304 (392)
-.....+||.+....+ ++++|+.+|+++++
T Consensus 68 --------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~ 102 (452)
T 3e4b_A 68 --------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA 102 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH
Confidence 1134566777555544 67788888877765
No 262
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.40 E-value=0.064 Score=41.31 Aligned_cols=63 Identities=8% Similarity=-0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 328 AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 328 ~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
-.||.+....|++..|+.-|++|++....- ......+.+...++. .+.-++++..|+.+|++|
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~--~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSY--AVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHH--HHHHccCHHHHHHHHHHH
Confidence 367899999999999999999999887654 233455677778877 888999999999998764
No 263
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.89 E-value=0.24 Score=45.80 Aligned_cols=97 Identities=5% Similarity=-0.187 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
..-.++.++...+++++|+.+|++++... . . ..-....-++|.++..+|++++|+..|++++. -
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--------d-~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g 200 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--------D-K---FLAGAAGVAHGVAAANLALFTEAERRLTEAND----S 200 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--------C-H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC--------C-c---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----C
Confidence 55677889999999999999997442211 0 0 01133456889999999999999999998861 1
Q ss_pred hcCCC-chhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 358 TLKPE-EAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 358 ~~~~~-~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
...|. .......++. ++..+++..+|...|+++
T Consensus 201 ~~~P~~~~da~~~~gl--aL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 201 PAGEACARAIAWYLAM--ARRSQGNESAAVALLEWL 234 (282)
T ss_dssp TTTTTTHHHHHHHHHH--HHHHHTCHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 11133 4445566666 888889988888888753
No 264
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.10 E-value=0.56 Score=37.75 Aligned_cols=88 Identities=18% Similarity=0.230 Sum_probs=64.3
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhc
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKR 312 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~----~g~l~~A~~~~e~aL~i~~~~~~~ 312 (392)
++..+...+...+|+.+++.+.+. . ...+..+||.++.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----N---------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----T---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----C---------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------
Confidence 344442233345577777766432 1 13577899999988 79999999999998642
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 016262 313 HSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 313 ~~~~~~~~~dla~sl~~l~~v~~~----lg~~~~A~~~~~~al~i 353 (392)
....+..+||.++.. .+++++|+.+|+++.+.
T Consensus 91 ---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 91 ---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp ---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 115667899999998 89999999999998854
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.90 E-value=3.6 Score=34.66 Aligned_cols=101 Identities=13% Similarity=-0.019 Sum_probs=63.0
Q ss_pred cccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcC---------
Q 016262 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH--------- 313 (392)
Q Consensus 243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~--------- 313 (392)
..+.|..|+.+..-.......=..... .......+..+++..+..++|..|..+|.++|+.++.+....
T Consensus 32 d~~LY~sA~~La~lLlSl~~~~~~~~s--p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNNNPELFS--PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSTTSSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HhhhHHHHHHHHHHHHHhhcCCccccc--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 455667777776654444322111111 333456788999999999999999999999999887432221
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Q 016262 314 ---SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG 346 (392)
Q Consensus 314 ---~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~ 346 (392)
+.......| +...=+++..+..+|+..+|+..
T Consensus 110 ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 110 ASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp -------CCCCH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcccccccch-HHHHHHHHHHHHHHCCHHHHHHH
Confidence 111112223 23334689999999999887774
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.76 E-value=2.1 Score=36.07 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcC------
Q 016262 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLK------ 360 (392)
Q Consensus 288 ~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~------ 360 (392)
..+.|+.|+-.....+.+... .++ .......+.++..+|++....|+|.+|..+|++|+++.+.+ ...
T Consensus 32 d~~LY~sA~~La~lLlSl~~~----~~~-~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 32 AAGLHSNVRLLSSLLLTLSNN----NPE-LFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH----STT-SSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HhhhHHHHHHHHHHHHHhhcC----Ccc-cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 567788888877776666433 221 11222457778999999999999999999999999999977 221
Q ss_pred ------------CCchhHHHhhcchhHHHHHHhhhccccchh
Q 016262 361 ------------PEEAGLEQRCWNSSTTNFQKNHLNQLPKFR 390 (392)
Q Consensus 361 ------------~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~ 390 (392)
+.+.++.-+++. .+-.|++...||.+.+
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~--C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAE--CYTVLKQDKDAIAILD 146 (167)
T ss_dssp ----------CCCCHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred cccCCCcccccccchHHHHHHHHH--HHHHHCCHHHHHHHHh
Confidence 112244455555 6667777777766543
No 267
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.23 E-value=0.22 Score=53.34 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=56.4
Q ss_pred CceeccccccccccCceecccC-cHhHHHhHHhcC----CCCCCCcCCcc--cchhhHHHHHHHHHHhhhhh
Q 016262 88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR 152 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~~~~~~~~~~~ 152 (392)
+.|.|||-.+++. +||+++-| ++|=+..|.+|. .||.-|.++.. +.||..|+..|+.+......
T Consensus 890 ~~F~cPIs~~lM~-DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 890 DEFLDPLMYTIMK-DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp GGGBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred HHhCCcchhhHHh-CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 5799999999999 99999998 699999999994 49999998876 89999999999999876543
No 268
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.62 E-value=3.8 Score=40.42 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhh-cCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch-hH
Q 016262 289 GGDLQAARSYYVRSLNVRRDAVK-RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GL 366 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~~~~-~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a-~l 366 (392)
.|+++.|....++++++.+.+.. ..+.. ......++.++..+|++++|...|++++++ .|.+. .+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 358 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLV 358 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------SSSCHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------cccCchHH
Confidence 68887444444444555444443 23321 334556678888888888888888887753 34332 12
Q ss_pred HHhhcchhHHHHHHhhhccccchhc
Q 016262 367 EQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
...++. .+..++++..++.+|++
T Consensus 359 ~~~~~~--~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 359 YIQYMK--FARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHhcCHHHHHHHHHH
Confidence 222222 33344555555555544
No 269
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.41 E-value=10 Score=37.29 Aligned_cols=53 Identities=4% Similarity=0.046 Sum_probs=35.7
Q ss_pred ccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN 304 (392)
Q Consensus 242 ~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~ 304 (392)
...|++.+|..+++.+.+ +.+... .......+.+....|++++|+..|+++++
T Consensus 332 ~~~g~~~~A~~~~~~al~----~~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLA----IEDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHTTCHHHHHHHHHHHHH----SSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHhC----ccccCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 356777888888887654 333221 12566667777777888888888888775
No 270
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.08 E-value=1.2 Score=33.36 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGD---LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 278 ~l~~lg~l~~~~g~---l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.+..++.+.+..++ .++|...++++|++ ++.+ ...+..+|.++...|++++|+.++++.+
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-------dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQL-------EPYN-------EAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------CcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666655544 67888888887763 4432 4566778999999999999999999866
No 271
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.04 E-value=0.28 Score=44.16 Aligned_cols=44 Identities=25% Similarity=0.686 Sum_probs=36.2
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC------CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~ 132 (392)
...|.+|.+++...-.+..|++.|=..|+..|+ .||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 467999999988666677799999999999985 49999886543
No 272
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=86.94 E-value=0.88 Score=44.50 Aligned_cols=104 Identities=6% Similarity=-0.007 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHH-------H---HHhhcC---CCCCchh--------hHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGG---DLQAARSYYVRSLNVR-------R---DAVKRH---SNVPSQV--------LDVAVSLAKVADV 333 (392)
Q Consensus 278 ~l~~lg~l~~~~g---~l~~A~~~~e~aL~i~-------~---~~~~~~---~~~~~~~--------~dla~sl~~l~~v 333 (392)
...+||.++...| ++++|+.+|+++++.- - ...... ..+.... .+....+.++|.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5678888888888 8889999988876521 0 000000 0000000 0123445567766
Q ss_pred -H--HhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHH-----hhhccccchhcC
Q 016262 334 -D--RSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQK-----NHLNQLPKFRSA 392 (392)
Q Consensus 334 -~--~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~-----~~~~~l~~~~~~ 392 (392)
+ ...|++++|+.+|+++.+ .+.+.....++. .+. .+ ++.+++.+|++|
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~--------~g~~~A~~~Lg~--~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRA--------ADQPRAELLLGK--LYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHH--------TTCHHHHHHHHH--HHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHH--HHH-cCCCCCCCHHHHHHHHHHH
Confidence 4 456788888888877662 234555555665 443 44 888888888875
No 273
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=86.43 E-value=0.04 Score=39.83 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHhhhccccc--------ccccccch--hHHHhHHHHHHHHHHhCCC
Q 016262 226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPM 266 (392)
Q Consensus 226 ~C~~h~~~L~~fC~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~ 266 (392)
.|+.|++.|++||. .|. .++| |.++++.+++.+++.+|..
T Consensus 20 ~C~~H~e~l~lfC~~d~~~iC~~C~-~~~H~~H~~~~l~ea~~~~k~~L~~ 69 (72)
T 2csv_A 20 KCPVHGKTMELFCQTDQTCICYLCM-FQEHKNHSTVTVEEAKAEKETESGP 69 (72)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHH-HTTTSSSCEEEHHHHHHHHSSCCCC
T ss_pred cCcccCCceEEEeCCCCeEEccccC-CCCCCCCCEecHHHHHHHHHHHHHH
Confidence 79999999999996 563 4888 9999999999888887765
No 274
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=85.92 E-value=4 Score=40.11 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=58.5
Q ss_pred hhcccccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHH-
Q 016262 233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR--RDA- 309 (392)
Q Consensus 233 ~L~~fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~--~~~- 309 (392)
.+..+|..|...|.+.+|..+|... .-..+++..+..+|++++|+..|.++-.+. +.+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~ 184 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 184 (449)
T ss_dssp -------------CTTTHHHHHHHT-------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHH
Confidence 4455667787888888888888643 246789999999999999999999985542 111
Q ss_pred -----------hhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 310 -----------VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 310 -----------~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+....-+.. --+..+..+...+...|++++|+.++++++
T Consensus 185 ~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 011111111 113334567788999999999999999985
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.24 E-value=2.1 Score=41.34 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
...+++.++...|+|.+|...+.+.++-.+.. .....+++ .......++..+||+.++...|.+|..+...+
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-----dd~~~lle---v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKL-----DDKNLLVE---VQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-----SCTHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHH---HHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 34689999999999999999998766544331 11222223 23344678899999999999999999888776
Q ss_pred hcCCCchhHHHhhcchhHHHH--HHhhhccccch
Q 016262 358 TLKPEEAGLEQRCWNSSTTNF--QKNHLNQLPKF 389 (392)
Q Consensus 358 ~~~~~~a~l~~~~~~~~~~~~--l~~~~~~l~~~ 389 (392)
..+|.........+. .++. .++|..|-.+|
T Consensus 173 ~~~p~i~a~i~~~~G--i~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 173 YCPPKVQGALDLQSG--ILHAADERDFKTAFSYF 204 (394)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh--HHHHHhccCHHHHHHHH
Confidence 555555544444444 3333 45555554444
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=84.61 E-value=5.1 Score=29.54 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+-|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 556666677777788999999999999999999987
No 277
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=84.59 E-value=2.6 Score=33.34 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcC
Q 016262 320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLK 360 (392)
Q Consensus 320 ~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l-~~~ 360 (392)
..+-|..|...|.-....|++++|+.+|.++++++... ...
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e 55 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYE 55 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666655667799999999999999999987 443
No 278
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=83.87 E-value=2.7 Score=40.25 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
...-++......|++++|+..+++++.+. +. +..+..+|.++...|+.++|++.|++|+.+
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s--------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLE-------MS--------WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455555666799999999999999773 11 445567899999999999999999999843
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=82.08 E-value=7.6 Score=28.53 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+-|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 345555666666788899999999999999999987
No 280
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=79.27 E-value=1.1 Score=42.71 Aligned_cols=57 Identities=25% Similarity=0.484 Sum_probs=42.4
Q ss_pred ceeccccccccccCceecccCcHhHHHh--H------HhcCCCCCCCcCCcc--cchhhHHHHHHHH
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKAC--I------SRFKDCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~C--i------~~~~~CP~C~~~~~~--~~~n~~l~~~~~~ 145 (392)
.|.||+=...+..+.+...|.|.-|..- + ...|.||.|...+.. +..+..+.+++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 5889999888886677788999844322 1 123889999998865 8888888777654
No 281
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=78.31 E-value=15 Score=30.24 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
...+=++|..+.++|+|++|+.+++++++
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44567889999999999999999998873
No 282
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.40 E-value=25 Score=36.10 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~a 302 (392)
..+++++++....++++.|...|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 36789999999999999999999885
No 283
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=77.36 E-value=7 Score=29.40 Aligned_cols=37 Identities=24% Similarity=0.119 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+.|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3556666667766778899999999999999999987
No 284
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=76.27 E-value=4.1 Score=41.26 Aligned_cols=93 Identities=10% Similarity=-0.154 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGG--DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~l~~lg~l~~~~g--~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg-~~~~A~~~~~~al~il 354 (392)
++..-+.+...++ ++++++.+|++++++ ++.+ ....+..+.+...+| .+++|++++++++
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-------d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I--- 171 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEA-------DERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLI--- 171 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhh-------cccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHH---
Confidence 4566677777778 779999999888865 2221 445667788888888 8888888887766
Q ss_pred HHhhcCCCchhHHHhhcchhHHHHH--------------HhhhccccchhcC
Q 016262 355 ESLTLKPEEAGLEQRCWNSSTTNFQ--------------KNHLNQLPKFRSA 392 (392)
Q Consensus 355 e~l~~~~~~a~l~~~~~~~~~~~~l--------------~~~~~~l~~~~~~ 392 (392)
..+|.+...-..++. ++..+ +.+.++|.+|++|
T Consensus 172 ---~~~p~n~saW~~r~~--ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 172 ---TRNFSNYSSWHYRSC--LLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp ---TTTCCCHHHHHHHHH--HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred ---HHCCCCccHHHHHHH--HHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 556666655444444 44443 5567777777654
No 285
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.98 E-value=2.4 Score=31.71 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 326 SLAKVADVDRSIGN---EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 326 sl~~l~~v~~~lg~---~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
.+.-+|.++...++ ..+|...+++++ ..+|.+...+..++. .+...++|.+|+.+|++
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL------~~dp~~~rA~~~lg~--~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQAL------QLEPYNEAALSLIAN--DHFISFRFQEAIDTWVL 68 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHH------HHCTTCHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH------HHCcCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 34445555544444 467777777766 577888888878887 77788888888888875
No 286
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.40 E-value=1.6 Score=41.41 Aligned_cols=57 Identities=18% Similarity=0.403 Sum_probs=42.3
Q ss_pred ceeccccccccccCceecccCcHhHHHh--H------HhcCCCCCCCcCCcc--cchhhHHHHHHHH
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKAC--I------SRFKDCPLCGADIEK--IEADTTLQDVVDR 145 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~C--i------~~~~~CP~C~~~~~~--~~~n~~l~~~~~~ 145 (392)
.|.||+=...+..+.+...|.|.-|..- + ...|.||.|.+.+.. +..+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 5889999888886677788999844322 1 123889999998875 8888888777653
No 287
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=74.79 E-value=0.77 Score=33.58 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=25.4
Q ss_pred CcceecCCCCCcc---h---hHhHHHHHHHhhhchhhHHHHhhhcHHHHHH-HHH
Q 016262 171 KKVIYEDVSMERG---A---FLVQQAMRAFRAQNVESAKSRLSLCTEDIRD-QIE 218 (392)
Q Consensus 171 ~~~~~Cd~c~~~~---~---cl~c~a~~~~~~g~~~~A~~~l~~c~~~~~~-~l~ 218 (392)
...++||+|.+.+ + |+.|.+ ++|+.|++. |..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~----------------s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEV----------------SYCDECLKATHPN 66 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTE----------------EECHHHHHHHSCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccc----------------hhhhhhhHhhcCC
Confidence 4568999998643 2 999999 999999986 653
No 288
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=74.15 E-value=1.6 Score=42.97 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
....+|+.....|.+++|+.+|.++ ....++++++..+|++++|++.|+++..+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANST 177 (449)
T ss_dssp -------------CTTTHHHHHHHT----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence 7889999999999999999999855 23578899999999999999999988544
No 289
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=73.08 E-value=8.9 Score=28.39 Aligned_cols=34 Identities=26% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..+..-|.-....|++++|+..|.++++.+...
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a 49 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 49 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4455556666688899999999999999999887
No 290
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=71.94 E-value=6.5 Score=39.73 Aligned_cols=79 Identities=5% Similarity=-0.127 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHH
Q 016262 299 YVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG--NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTT 376 (392)
Q Consensus 299 ~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg--~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~ 376 (392)
|+++++....+....+.. ..+..+-+-+...+| ++++|++.++++++ .+|.+...-..++- ++
T Consensus 89 ~~~eL~~~~~~l~~~pK~-------y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~------~d~~N~~aW~~R~~--~l 153 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKS-------YGTWHHRCWLLSRLPEPNWARELELCARFLE------ADERNFHCWDYRRF--VA 153 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH------HCTTCHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcccccHHHHHHHHHHHHh------hccccccHHHHHHH--HH
Confidence 344444444444445543 345666777888899 66888888888874 45666554444444 55
Q ss_pred HHHH-hhhccccchhcC
Q 016262 377 NFQK-NHLNQLPKFRSA 392 (392)
Q Consensus 377 ~~l~-~~~~~l~~~~~~ 392 (392)
..++ .+.++|.|+.++
T Consensus 154 ~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 154 AQAAVAPAEELAFTDSL 170 (567)
T ss_dssp HHTCCCHHHHHHHHHTT
T ss_pred HHcCCChHHHHHHHHHH
Confidence 5555 566677776553
No 291
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=71.27 E-value=10 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 321 ~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+-|..+...|.-....|++++|+.+|.++++.+...
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3455566666666667799999999999999999887
No 292
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=70.56 E-value=10 Score=35.23 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
...-++.++...|++++|+..+.+.+. ..+. .+-...+..++.++-.+|+.+.|...+++..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~-------~~~~-----~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGID-------NDEA-----EGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHT-------SSCS-----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCCC-----cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345788999889999999998887542 2210 0123445566788999999998888776644
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.72 E-value=22 Score=34.16 Aligned_cols=105 Identities=17% Similarity=-0.010 Sum_probs=70.9
Q ss_pred cccccccccchhHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016262 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV 316 (392)
Q Consensus 237 fC~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~ 316 (392)
++..+...|++.++..+.....+....+.+. ..+-+..-..-.++..++++.++...|.++..+.-... .+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~-----~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~----~~ 175 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDK-----NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY----CP 175 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC----CC
Confidence 4456668889999988888777777666542 22333344445667788999999999999887754321 11
Q ss_pred CchhhHHHHHHHHH-HHHHH-hcCCHHHHHHHHHHHHHHH
Q 016262 317 PSQVLDVAVSLAKV-ADVDR-SIGNEDVAVDGFQEAIKRL 354 (392)
Q Consensus 317 ~~~~~dla~sl~~l-~~v~~-~lg~~~~A~~~~~~al~il 354 (392)
+ .+...+... |.++. ..++|+.|..+|-++.+-+
T Consensus 176 p----~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 176 P----KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp H----HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 1 223334433 67777 7999999999998886444
No 294
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=69.36 E-value=40 Score=29.69 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=55.3
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 279 LNKIGDLKYYG-----GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 279 l~~lg~l~~~~-----g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
++.-|+.+.++ |+.+.|...|++|+++....+ .+.++ +.|+..||.-.+.+..+++.++|+...++|..+
T Consensus 123 ~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L--~pthP---irLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 123 LKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP--DKIEQ---LPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG--GGGGG---SCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC--CCCCh---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34445555444 668899999999999876522 12222 246777888889999999999999999999998
Q ss_pred HHHh
Q 016262 354 LESL 357 (392)
Q Consensus 354 le~l 357 (392)
.+..
T Consensus 198 ~~~~ 201 (227)
T 2o8p_A 198 LELQ 201 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=68.88 E-value=9.3 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 330 VADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
+|-=+..+|+|+.|+.+|+.+++.+...
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999997
No 296
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=67.98 E-value=0.027 Score=39.67 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHH-Hhhhccccc--------ccccccch--hHHHhHHHHHHHHHHhCC
Q 016262 226 LCSQL-GAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLP 265 (392)
Q Consensus 226 ~C~~h-~~~L~~fC~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~ 265 (392)
.|+.| ++.|++||. .|...++| |.++++.+++.+.+.+|.
T Consensus 10 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~~L~ 60 (64)
T 2d8u_A 10 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTESG 60 (64)
T ss_dssp CCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTTTCCSSCCCCSS
T ss_pred cCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHHHHHHHHHHHHH
Confidence 68999 899999996 45345788 888887776655555543
No 297
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.92 E-value=9.1 Score=27.85 Aligned_cols=32 Identities=38% Similarity=0.843 Sum_probs=24.8
Q ss_pred CceeccccccccccCceeccc----CcHhHHHhHHhc
Q 016262 88 GPLSCMICQALLFECSKCTPC----SHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C----~h~fC~~Ci~~~ 120 (392)
..+.|.+|.+-|.|..++ .| .|.||..|-..+
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHH
Confidence 458999999999955443 33 699999998665
No 298
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.84 E-value=14 Score=27.74 Aligned_cols=42 Identities=26% Similarity=0.681 Sum_probs=31.7
Q ss_pred CceeccccccccccCceeccc-CcHhHHHhHHhcC----CCCCCCcCCcc
Q 016262 88 GPLSCMICQALLFECSKCTPC-SHVYCKACISRFK----DCPLCGADIEK 132 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~~C-~h~fC~~Ci~~~~----~CP~C~~~~~~ 132 (392)
+.+.|..|--.. . -.+.| .|-+|..|+..+. .||.|+.++..
T Consensus 27 G~~nCKsCWf~~--k-~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K-GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCC--S-SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhcccc--C-CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 568899997652 3 44555 6889999998774 39999987765
No 299
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=63.22 E-value=26 Score=32.32 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYG-----GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS-IGNEDVAVDGFQEA 350 (392)
Q Consensus 277 ~~l~~lg~l~~~~-----g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~-lg~~~~A~~~~~~a 350 (392)
....-+|.+|... |+.++|..+|+++|++. +... ....-..|+.+.. +|+++.|..+++++
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------P~~~------id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------SAHD------PDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-------CTTC------SHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-------CCCC------chHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4677889999885 99999999999999873 2210 1223345666655 59999999999998
Q ss_pred HH
Q 016262 351 IK 352 (392)
Q Consensus 351 l~ 352 (392)
+.
T Consensus 267 L~ 268 (301)
T 3u64_A 267 LA 268 (301)
T ss_dssp HH
T ss_pred Hc
Confidence 74
No 300
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=56.94 E-value=67 Score=29.86 Aligned_cols=92 Identities=9% Similarity=-0.171 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGG--DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~l~~lg~l~~~~g--~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~-~~~A~~~~~~al~il 354 (392)
+.+.-+.+...++ .+++++.++.+++++ ++.+ -.+.+.-+.+...+|. ++++++++.+++
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~-------dprN-------y~AW~~R~~vl~~l~~~~~eel~~~~~~I--- 172 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEA-------DERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLI--- 172 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHHH---
Confidence 3444455555566 477888887777653 3332 3345666777788888 578888888877
Q ss_pred HHhhcCCCchhHHHhhcchhHHHHH--------------Hhhhccccchhc
Q 016262 355 ESLTLKPEEAGLEQRCWNSSTTNFQ--------------KNHLNQLPKFRS 391 (392)
Q Consensus 355 e~l~~~~~~a~l~~~~~~~~~~~~l--------------~~~~~~l~~~~~ 391 (392)
..+|.+...-..++. ++..+ ..+..+|.++.+
T Consensus 173 ---~~~p~N~SAW~~R~~--ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 173 ---TRNFSNYSSWHYRSC--LLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp ---HHCSCCHHHHHHHHH--HHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred ---HHCCCCHHHHHHHHH--HHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 455666554444444 44444 456667776654
No 301
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=56.79 E-value=39 Score=31.00 Aligned_cols=28 Identities=4% Similarity=-0.270 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGG--DLQAARSYYVRSLN 304 (392)
Q Consensus 277 ~~l~~lg~l~~~~g--~l~~A~~~~e~aL~ 304 (392)
.+.+.-+.+...++ ++++++.+++++|.
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~ 97 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIAL 97 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 45666777777777 88899988888775
No 302
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=55.80 E-value=91 Score=28.72 Aligned_cols=38 Identities=8% Similarity=-0.135 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHh----hcCCCchhHHHhh
Q 016262 333 VDRSIGNEDVAVDGFQEAIKRLESL----TLKPEEAGLEQRC 370 (392)
Q Consensus 333 v~~~lg~~~~A~~~~~~al~ile~l----~~~~~~a~l~~~~ 370 (392)
++..+|++++|...++..++..=++ ...|.++.++-++
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 7899999999999888655554222 1136666666444
No 303
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=54.05 E-value=1.2 Score=33.69 Aligned_cols=40 Identities=28% Similarity=0.617 Sum_probs=27.5
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC---CCCCCCcCCccc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEKI 133 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~~ 133 (392)
+..||+|+..+.-. =++.+|..|-..+. .||.|.+++..+
T Consensus 32 ~~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-----NGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEEE-----TTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred cccCccCCCcceec-----CCEEECccccchhhccccCcchhhHHHHH
Confidence 38999999886621 23445888876663 499999876553
No 304
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=53.69 E-value=0.17 Score=33.99 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHHHHHhhhccccc--------ccccccch--hHHHhHH
Q 016262 226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAYF 254 (392)
Q Consensus 226 ~C~~h~~~L~~fC~--------~C~~~gdh--h~a~~~~ 254 (392)
.|+.|++.|++||. .|...++| |.++++.
T Consensus 10 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 48 (53)
T 2did_A 10 LCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLS 48 (53)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECC
T ss_pred cChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHH
Confidence 68999999999996 45334677 6655443
No 305
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=53.14 E-value=79 Score=24.62 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCC
Q 016262 287 YYGGDLQAARSYYVRSLNVRRDAVKRHS 314 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~aL~i~~~~~~~~~ 314 (392)
...|++++|+.+|.++++....++...+
T Consensus 29 D~ag~y~eAl~lY~~Aie~l~~alk~e~ 56 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQYFLHVVKYEA 56 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4459999999999999998888776553
No 306
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=52.77 E-value=0.42 Score=30.22 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=12.2
Q ss_pred HHHHHHhhhccccc
Q 016262 226 LCSQLGAVLGMLGD 239 (392)
Q Consensus 226 ~C~~h~~~L~~fC~ 239 (392)
.|+.|++.|++||.
T Consensus 5 ~C~~H~e~l~lfC~ 18 (42)
T 1fre_A 5 KCSEHDERLKLYCK 18 (42)
T ss_dssp CCCSSCSSCCCCCC
T ss_pred cchhhCCeeeEEeC
Confidence 58889999999996
No 307
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=50.06 E-value=75 Score=28.54 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHh-hcC-CCchhH
Q 016262 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD----GFQEAIKRLESL-TLK-PEEAGL 366 (392)
Q Consensus 293 ~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~----~~~~al~ile~l-~~~-~~~a~l 366 (392)
+.|...|++|+++.... -.+.++ +-|...||--.+.|..+++.++|+. .|.+|+.-+..| +.. .+...+
T Consensus 152 e~a~~aY~~A~~iA~~~--L~pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~EesykDstlI 226 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTE--LAPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLI 226 (260)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-----CHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCCCCc---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHH
Confidence 46777888888887542 223333 3567778888899999999998877 456666667777 222 333444
Q ss_pred HHhhc
Q 016262 367 EQRCW 371 (392)
Q Consensus 367 ~~~~~ 371 (392)
++++.
T Consensus 227 mqLLR 231 (260)
T 1o9d_A 227 MQLLR 231 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 308
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=48.89 E-value=0.051 Score=40.51 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHH-Hhhhccccc--------ccccccch--hHHHhHHHHHHHHHHhCCCCch
Q 016262 226 LCSQL-GAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPMDDL 269 (392)
Q Consensus 226 ~C~~h-~~~L~~fC~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~~~~ 269 (392)
.|+.| ++.|.+||. .|...++| |.++++.+++.+++.+|.....
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~L~~~l~ 74 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLT 74 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCCCCCCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 69999 689999996 45344888 8888887777666666655443
No 309
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.85 E-value=54 Score=31.05 Aligned_cols=43 Identities=5% Similarity=-0.122 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 266 ~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~ 308 (392)
....++...+....+.+........+.+.....|...|+.+..
T Consensus 81 ~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~ 123 (390)
T 1deq_A 81 KNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIE 123 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 3344445555555555555555556666666666666654433
No 310
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=46.54 E-value=43 Score=31.53 Aligned_cols=84 Identities=5% Similarity=-0.192 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI-G-NEDVAVDGFQEAIKRL 354 (392)
Q Consensus 278 ~l~~lg~l~~~~g-~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~l-g-~~~~A~~~~~~al~il 354 (392)
+.+.-+.+...++ .+++++.+++++| ...+.+ ....+.-+.+...+ + ++++++..+++++
T Consensus 90 aWn~R~~iL~~l~~~l~eEL~~~~~~L-------~~nPKn-------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L--- 152 (349)
T 3q7a_A 90 VWQYRFSLLTSLNKSLEDELRLMNEFA-------VQNLKS-------YQVWHHRLLLLDRISPQDPVSEIEYIHGSL--- 152 (349)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH-------HTTCCC-------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH-------HhCCCc-------HHHHHHHHHHHHHhcCCChHHHHHHHHHHH---
Confidence 3444455555556 3666666555544 333332 34456666666666 6 6555555555444
Q ss_pred HHhhcCCCchhHHHhhcchhHHHHHHhhh
Q 016262 355 ESLTLKPEEAGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 355 e~l~~~~~~a~l~~~~~~~~~~~~l~~~~ 383 (392)
..+|.+...-..++- ++..++.+.
T Consensus 153 ---~~dpkNy~AW~~R~w--vl~~l~~~~ 176 (349)
T 3q7a_A 153 ---LPDPKNYHTWAYLHW--LYSHFSTLG 176 (349)
T ss_dssp ---SSCTTCHHHHHHHHH--HHHHHHHTT
T ss_pred ---HhCCCCHHHHHHHHH--HHHHhcccc
Confidence 566666655555555 555555443
No 311
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=46.52 E-value=8.1 Score=36.96 Aligned_cols=94 Identities=12% Similarity=0.132 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHHHHHH-HhhcCCCCCchhhH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016262 289 GGDLQAARSYYVRSLNVRRD-AVKRHSNVPSQVLD--------VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359 (392)
Q Consensus 289 ~g~l~~A~~~~e~aL~i~~~-~~~~~~~~~~~~~d--------la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~ 359 (392)
.|+.+.|...+.++|.+.+- .+..... ..+... ....+..+++.+..+|++.+|+..+++.+ ..
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~-~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~------~~ 200 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRD-FQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT------FE 200 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------Hh
Confidence 45666777777777765432 1111111 111111 12234455677777888888777655543 56
Q ss_pred CCCchhHHHhhcchhHHHHHHhhhccccchhc
Q 016262 360 KPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRS 391 (392)
Q Consensus 360 ~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~ 391 (392)
+|-...+...+.. .+...+++..||..|++
T Consensus 201 ~P~~E~~~~~lm~--al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 201 HPYREPLWTQLIT--AYYLSDRQSDALGAYRR 230 (388)
T ss_dssp STTCHHHHHHHHH--HHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 6666666655555 56677777777777764
No 312
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=44.94 E-value=88 Score=28.57 Aligned_cols=29 Identities=10% Similarity=-0.080 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 016262 324 AVSLAKVADVDRSIG--NEDVAVDGFQEAIK 352 (392)
Q Consensus 324 a~sl~~l~~v~~~lg--~~~~A~~~~~~al~ 352 (392)
.+..+.-+.+...+| .+++|+..+++++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~ 97 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL 97 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 455677788888888 88888888888763
No 313
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=44.68 E-value=0.36 Score=31.85 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHH-Hhhhccccc--------ccccccch--hHHHhHH
Q 016262 226 LCSQL-GAVLGMLGD--------CCRAMGDA--DAAVAYF 254 (392)
Q Consensus 226 ~C~~h-~~~L~~fC~--------~C~~~gdh--h~a~~~~ 254 (392)
.|+.| ++.|++||. .| ..++| |..+++.
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C-~~~~H~~H~~~~l~ 46 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDC-QLNAHKDHQYQFLE 46 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHH-HHTTTTTCCEEETT
T ss_pred cCcCCCCCCEEEEeCCCCEEEeccc-CCCcCCCCceecHH
Confidence 58899 899999996 45 34666 6555443
No 314
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=44.40 E-value=93 Score=29.16 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=5.7
Q ss_pred HHHHHHHHHhcCC
Q 016262 327 LAKVADVDRSIGN 339 (392)
Q Consensus 327 l~~l~~v~~~lg~ 339 (392)
.+.-+.+...+|.
T Consensus 162 W~~R~wvl~~l~~ 174 (349)
T 3q7a_A 162 WAYLHWLYSHFST 174 (349)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 3444444444443
No 315
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.25 E-value=58 Score=32.22 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.......+-.||++..+...+..|..+|.+|+.+ .+ +.+...+.||.+....|+.-.|+-+|-+++
T Consensus 148 ~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-------~P-------~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VP-------SNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CT-------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHh-------CC-------CCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3455667889999999999999999999988765 22 236678889999999999999998887776
Q ss_pred H
Q 016262 352 K 352 (392)
Q Consensus 352 ~ 352 (392)
.
T Consensus 214 ~ 214 (497)
T 1ya0_A 214 A 214 (497)
T ss_dssp S
T ss_pred h
Confidence 4
No 316
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=41.13 E-value=11 Score=25.93 Aligned_cols=37 Identities=32% Similarity=0.809 Sum_probs=26.3
Q ss_pred eeccccccccccCc--eecccCcHhHHHhHH----hcCCCCCC
Q 016262 90 LSCMICQALLFECS--KCTPCSHVYCKACIS----RFKDCPLC 126 (392)
Q Consensus 90 ~~C~iC~~~~~~~p--~~~~C~h~fC~~Ci~----~~~~CP~C 126 (392)
..|--|+..|.+.. ....|++.||..|=. ....||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35888998876322 367799999999942 23568887
No 317
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.34 E-value=0.87 Score=31.28 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHHhhhccccc--------ccccccch--hHHHhH
Q 016262 226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAY 253 (392)
Q Consensus 226 ~C~~h~~~L~~fC~--------~C~~~gdh--h~a~~~ 253 (392)
.|+.|++.|++||. .|...++| |.++++
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcCCCCcEeeH
Confidence 68999999999996 45334677 655544
No 318
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=38.94 E-value=73 Score=30.03 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHhhcCCCCCchh--hHHHHHHHHHHHHHHhc-
Q 016262 270 EIIHTLSVSLNKIGDLKYYGG---------DLQAARSYYVRSLNVRRDAVKRHSNVPSQV--LDVAVSLAKVADVDRSI- 337 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g---------~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~--~dla~sl~~l~~v~~~l- 337 (392)
.+.-++.-.+-+||-++..+| .+..|..+|.+|--+..-+.+.....+..- .++...|.++.....+.
T Consensus 111 sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~ 190 (363)
T 3rau_A 111 DIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLMLGQAQEC 190 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSGGGSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 345556667777777776653 367888899998877766555444332221 24555666553222211
Q ss_pred -------CCH---------HHHHHHHHHHHHHHHHh
Q 016262 338 -------GNE---------DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 338 -------g~~---------~~A~~~~~~al~ile~l 357 (392)
.+. .++.++|+++.+.+...
T Consensus 191 ~~~Kai~~~~k~~liAkLa~q~~~~Y~~a~~~l~~~ 226 (363)
T 3rau_A 191 LLEKSMLDNRKSFLVARISAQVVDYYKEACRALENP 226 (363)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111 24556778887777643
No 319
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=38.86 E-value=85 Score=28.83 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHH
Q 016262 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI-----GNEDVAVDGFQEAIKRLE 355 (392)
Q Consensus 295 A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~l-----g~~~~A~~~~~~al~ile 355 (392)
|+....++..+.+.+++-++. +.-.....-+|.+|..+ |+.++|..+|++|++|--
T Consensus 175 Al~~l~~A~a~lerAleLDP~-----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP 235 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPS-----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS 235 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC
Confidence 344444444444554444443 11244566788899986 999999999999997654
No 320
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.85 E-value=0.66 Score=31.68 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=12.8
Q ss_pred HHHHHHhhhccccc
Q 016262 226 LCSQLGAVLGMLGD 239 (392)
Q Consensus 226 ~C~~h~~~L~~fC~ 239 (392)
.|..|++.|++||.
T Consensus 20 ~C~~H~e~L~lfC~ 33 (57)
T 2egm_A 20 ICPKHQEALKLFCE 33 (57)
T ss_dssp BCTTTCCBCCEEET
T ss_pred cChhhCceeeEEcC
Confidence 69999999999996
No 321
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=38.72 E-value=53 Score=26.73 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchhHHHhhcchhHHHHHHhh
Q 016262 329 KVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRCWNSSTTNFQKNH 382 (392)
Q Consensus 329 ~l~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~a~l~~~~~~~~~~~~l~~~ 382 (392)
+.+......|+++++-....+++.|+..| .++.+ -.+-.++.. +|.|+...
T Consensus 38 ~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e-geiA~nL~~--LY~y~~~~ 90 (145)
T 1vh6_A 38 RLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN-IELSASMGA--MYDYMYRR 90 (145)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHH--HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHH--HHHHHHHH
Confidence 33444556689999999999999999888 55444 455566666 67666544
No 322
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.38 E-value=15 Score=27.33 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=34.2
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC--CCCCCCcCCc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIE 131 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~ 131 (392)
=|.|..|...|........=+..||..|..+.. .|..|...+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 488999999887556666678899999997764 5999988765
No 323
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=38.06 E-value=79 Score=28.51 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353 (392)
Q Consensus 292 l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~i 353 (392)
.+.|...|++|+++...-++..+.++ +-|...||--.+.|..+++.++|+...++|.+-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThP---iRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDP---LYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCH---HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888765442234443 456777888789999999999999988887765
No 324
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=36.99 E-value=1.5e+02 Score=30.01 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=16.0
Q ss_pred hcccccccccccchhHHHhHHHHH
Q 016262 234 LGMLGDCCRAMGDADAAVAYFADS 257 (392)
Q Consensus 234 L~~fC~~C~~~gdhh~a~~~~e~~ 257 (392)
.+.+++.|...+++..|...|...
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345556666677777777777765
No 325
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.91 E-value=78 Score=31.30 Aligned_cols=10 Identities=30% Similarity=0.278 Sum_probs=5.3
Q ss_pred HHHHHhhhcc
Q 016262 376 TNFQKNHLNQ 385 (392)
Q Consensus 376 ~~~l~~~~~~ 385 (392)
|..+|+|+.+
T Consensus 178 Y~~~QKQLeQ 187 (562)
T 3ghg_A 178 YEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 326
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=36.78 E-value=16 Score=28.63 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=35.7
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcC--CCCCCCcCCcc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK--DCPLCGADIEK 132 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--~CP~C~~~~~~ 132 (392)
=|.|..|...|...+....=+..||..|..+.. .|+.|+.++..
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 488999999888556777778899999998753 59999987763
No 327
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=36.17 E-value=1.1e+02 Score=24.37 Aligned_cols=50 Identities=10% Similarity=-0.065 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCc-hhHHHhhcchhHHHHHHhh
Q 016262 331 ADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNH 382 (392)
Q Consensus 331 ~~v~~~lg~~~~A~~~~~~al~ile~l--~~~~~~-a~l~~~~~~~~~~~~l~~~ 382 (392)
+......|+++++-....+++.|+..| .++.+. -.+-.++.. +|.|+...
T Consensus 43 A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~--LY~y~~~~ 95 (131)
T 3iqc_A 43 AKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTG--LYTHQIKV 95 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH--HHHHHHHH
Confidence 333445688888899999999999988 555443 256666666 77766554
No 328
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.16 E-value=4.2 Score=29.84 Aligned_cols=38 Identities=24% Similarity=0.691 Sum_probs=22.5
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhcC---CCCCCCcCCcc
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~ 132 (392)
+.||.|...+.-+.. +.+|..|-..+. .||.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~-----~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-----TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS-----EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC-----ceECccccccCCCcccCcchhhHHHH
Confidence 678888877652222 334666654442 38898876544
No 329
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.16 E-value=53 Score=32.50 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 323 la~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
....|..|||+.+-...+..|..+|.+|+.+ .|..-...+-++.
T Consensus 151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~------~P~~G~~~nqLav 194 (497)
T 1ya0_A 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAI 194 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHh------CCCCCchHHHHHH
Confidence 4456778999999999999999999999854 4444444444444
No 330
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=34.81 E-value=0.83 Score=29.79 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=12.1
Q ss_pred HHHHHH-hhhccccc
Q 016262 226 LCSQLG-AVLGMLGD 239 (392)
Q Consensus 226 ~C~~h~-~~L~~fC~ 239 (392)
.|+.|+ +.|++||.
T Consensus 8 ~C~~H~~e~l~lfC~ 22 (48)
T 3ddt_A 8 MCKEHEDEKINIYCL 22 (48)
T ss_dssp BCSSSTTSBCCEEET
T ss_pred cCCCCCCccccEEcC
Confidence 588898 89999996
No 331
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=34.43 E-value=38 Score=23.51 Aligned_cols=39 Identities=23% Similarity=0.578 Sum_probs=24.3
Q ss_pred eeccccccccccCceecccCcHhHHHhHHhc--------CCCCCCCcC
Q 016262 90 LSCMICQALLFECSKCTPCSHVYCKACISRF--------KDCPLCGAD 129 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--------~~CP~C~~~ 129 (392)
-.|.||.+- .+-...-.|...|-..|+... |.||.|...
T Consensus 13 ~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 457777654 212333456667778887532 679999764
No 332
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.34 E-value=6.4 Score=28.68 Aligned_cols=21 Identities=24% Similarity=0.903 Sum_probs=17.7
Q ss_pred ccCcHhHHHhHHhcCCCCCCCc
Q 016262 107 PCSHVYCKACISRFKDCPLCGA 128 (392)
Q Consensus 107 ~C~h~fC~~Ci~~~~~CP~C~~ 128 (392)
.|++.||..|...|.. -.|..
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSS
T ss_pred CCCCeeccccCccccC-Ccccc
Confidence 6999999999999977 66754
No 333
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=33.36 E-value=57 Score=26.77 Aligned_cols=49 Identities=8% Similarity=-0.026 Sum_probs=35.1
Q ss_pred hHHHhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016262 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV 305 (392)
Q Consensus 248 h~a~~~~e~~~~~~~~L~~~~~e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i 305 (392)
.+++.++++..+.- .+ ..-.+.+-.++..++.+|+|++|+.++++.|++
T Consensus 52 ~~gI~lLe~ll~~~------~p---~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 52 RKGIVLLEELLPKG------SK---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHS------CH---HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC------Cc---cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56676666553321 01 122456789999999999999999999998876
No 334
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.30 E-value=35 Score=27.76 Aligned_cols=39 Identities=28% Similarity=0.613 Sum_probs=26.3
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHh---------------cCCCCCCCc
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISR---------------FKDCPLCGA 128 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~---------------~~~CP~C~~ 128 (392)
+..|.+|.+- -+=.-.-.|-.+||..||.+ .|.||.|..
T Consensus 63 ~d~C~vC~~G-G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG-GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC-SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC-CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567777764 21223446888999999872 277999975
No 335
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.26 E-value=18 Score=34.94 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~ 356 (392)
...++++++...|++++|...|.+....... ....+++ +-.+-.+.-..+++..|..+++++..+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--------~~~kid~---~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--------TGAKIDV---MLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--------CCSHHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------hHHHHHH---HHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 5668999999999999999999876543211 1222232 223334556678999999888888665543
No 336
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=33.09 E-value=1.3e+02 Score=23.81 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=35.0
Q ss_pred HhcCCH-HHH---HHHHHHHHHHHHHh--hcCCCc-hhHHHhhcchhHHHHHHhhh
Q 016262 335 RSIGNE-DVA---VDGFQEAIKRLESL--TLKPEE-AGLEQRCWNSSTTNFQKNHL 383 (392)
Q Consensus 335 ~~lg~~-~~A---~~~~~~al~ile~l--~~~~~~-a~l~~~~~~~~~~~~l~~~~ 383 (392)
...|++ +++ -....+++.|+..| .++.+. -.+-.++.. +|.|+....
T Consensus 40 i~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~--LY~y~~~~L 93 (130)
T 1orj_A 40 YDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDT--IYTIILNTL 93 (130)
T ss_dssp GGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHH--HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHH--HHHHHHHHH
Confidence 345788 777 88899999999988 666554 357777777 888877665
No 337
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=33.03 E-value=36 Score=25.00 Aligned_cols=31 Identities=19% Similarity=0.602 Sum_probs=16.6
Q ss_pred CceeccccccccccCceec---ccCcHhHHHhHHhc
Q 016262 88 GPLSCMICQALLFECSKCT---PCSHVYCKACISRF 120 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~~ 120 (392)
.+-.|.||...- .-..+ -|+.+|=..|+.+.
T Consensus 14 ~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc--ccceeccccccccccHhhcccc
Confidence 456788887442 22222 24555556777663
No 338
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=31.43 E-value=98 Score=29.34 Aligned_cols=54 Identities=9% Similarity=-0.077 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcchhHHHHHHhhhccccchhcC
Q 016262 330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWNSSTTNFQKNHLNQLPKFRSA 392 (392)
Q Consensus 330 l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 392 (392)
++.+....|++++|+..+++|+.+ .| .+.....++. ++...+++..+++.|.+|
T Consensus 283 lal~~l~~gd~d~A~~~l~rAl~L------n~-s~~a~~llG~--~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 283 KAVSALVKGKTDESYQAINTGIDL------EM-SWLNYVLLGK--VYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH------CC-CHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc------CC-CHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 455666689999999999998866 23 2333356666 777889999999988765
No 339
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.35 E-value=1.5e+02 Score=21.33 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
...|++++|+.+|.++++....++...++
T Consensus 30 D~~g~y~eAl~lY~~aie~l~~alk~e~d 58 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEVLAQLVSLYRD 58 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 56799999999999999988877766544
No 340
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=30.27 E-value=3.2e+02 Score=25.55 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.+..+.+.....|++.+++....+.+. .++-+ -.....+-.++...|+..+|+..|++....+...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~-------~~P~~-------E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~e 238 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTF-------EHPYR-------EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 238 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 445566667777888888877665543 23321 1123455677889999999999999999987654
Q ss_pred -hcCCC
Q 016262 358 -TLKPE 362 (392)
Q Consensus 358 -~~~~~ 362 (392)
...|.
T Consensus 239 LG~~P~ 244 (388)
T 2ff4_A 239 LGIDPG 244 (388)
T ss_dssp HSCCCC
T ss_pred hCCCCC
Confidence 54443
No 341
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=29.81 E-value=1.5e+02 Score=21.31 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=24.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 286 KYYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 286 ~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
....|++++|+.+|.++++....++...+.
T Consensus 21 ~D~~g~y~eAl~lY~~aie~l~~~lk~e~d 50 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIEVLSQIIVLYPE 50 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 356799999999999999988887765543
No 342
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=29.41 E-value=20 Score=37.66 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=30.5
Q ss_pred CceeccccccccccC---------ceecccCcHh--------------------HHHhHHhcC------------CCCCC
Q 016262 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C 126 (392)
+.-.|+-|+..++|+ ..++.||..| |..|..++. .||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 446788888777732 1256777655 999998873 39999
Q ss_pred CcCCc
Q 016262 127 GADIE 131 (392)
Q Consensus 127 ~~~~~ 131 (392)
+=.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 86553
No 343
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=29.29 E-value=1.7e+02 Score=25.76 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 293 ~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
+.|...|++|+++.... -.+.++ +-|...|+--.+.+..+++.++|+..-++|.+
T Consensus 147 e~a~~aY~~A~~iA~~~--L~pthP---irLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTE--LPPTHP---IRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--CCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778888888887542 233333 35677778888999999999999886666554
No 344
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.21 E-value=11 Score=22.83 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=7.9
Q ss_pred ceeccccccccc
Q 016262 89 PLSCMICQALLF 100 (392)
Q Consensus 89 ~~~C~iC~~~~~ 100 (392)
-|.||+|+..|.
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 367777776655
No 345
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=28.76 E-value=14 Score=38.10 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=17.5
Q ss_pred HHhcCCHH--HHHHHHHHHHHHHHHh
Q 016262 334 DRSIGNED--VAVDGFQEAIKRLESL 357 (392)
Q Consensus 334 ~~~lg~~~--~A~~~~~~al~ile~l 357 (392)
..-+|+++ ++.++|+++++.++.+
T Consensus 327 SqhiGdl~~~~~~~~~~~~~~~~~~l 352 (657)
T 3ttc_A 327 SQHLGDLSDDGIQTQWREALRLMQNI 352 (657)
T ss_dssp CCCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred ccCccCCCCHHHHHHHHHHHHHHHHH
Confidence 34446666 7788888888888887
No 346
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=28.69 E-value=1.6e+02 Score=23.86 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 301 ~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+.+.+.+++....+.. -..-|=.||..+.++|+|++|+.+.+..+
T Consensus 60 ~GI~LLe~l~~~~~~~------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 60 LGVKILTDIYKEAESR------RRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHCCST------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccc------hhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555555544432 23345667888899999999999877655
No 347
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=28.45 E-value=1.6e+02 Score=23.23 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 301 RSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 301 ~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
+.+.+.++++.... +. .--.-|=.+|..+.++|+|.+|+.+.+..+
T Consensus 56 ~GI~lLe~l~~~~~--p~---~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 56 KGIVLLEELLPKGS--KE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHTTTSC--HH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--cc---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55556666655431 11 123345567888999999999999888766
No 348
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.80 E-value=10 Score=26.48 Aligned_cols=30 Identities=27% Similarity=0.733 Sum_probs=24.2
Q ss_pred eeccccccccccCceeccc-CcHhHHHhHHhcC
Q 016262 90 LSCMICQALLFECSKCTPC-SHVYCKACISRFK 121 (392)
Q Consensus 90 ~~C~iC~~~~~~~p~~~~C-~h~fC~~Ci~~~~ 121 (392)
--|.||.+. - .-+++.| +-.||..|+.+..
T Consensus 9 pWC~ICneD-A-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNED-A-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCSC-C-CEEETTTTSEEECSSHHHHHT
T ss_pred CeeEEeCCC-C-eEEecCCCCceehHHHHHHHc
Confidence 458999988 5 6788889 7899999987653
No 349
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=27.46 E-value=21 Score=37.49 Aligned_cols=44 Identities=32% Similarity=0.808 Sum_probs=31.8
Q ss_pred CceeccccccccccC---------ceecccCcHh--------------------HHHhHHhcC------------CCCCC
Q 016262 88 GPLSCMICQALLFEC---------SKCTPCSHVY--------------------CKACISRFK------------DCPLC 126 (392)
Q Consensus 88 ~~~~C~iC~~~~~~~---------p~~~~C~h~f--------------------C~~Ci~~~~------------~CP~C 126 (392)
+.-.|+-|+..++|+ ..++.||..| |..|..++. .||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 456788888887742 1256788777 999998872 39999
Q ss_pred CcCCc
Q 016262 127 GADIE 131 (392)
Q Consensus 127 ~~~~~ 131 (392)
+=.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 87654
No 350
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.42 E-value=41 Score=24.98 Aligned_cols=43 Identities=23% Similarity=0.628 Sum_probs=28.9
Q ss_pred eecccccccccc----Cc--eecccCcHhHHHhHHhc-----CCCCCCCcCCcc
Q 016262 90 LSCMICQALLFE----CS--KCTPCSHVYCKACISRF-----KDCPLCGADIEK 132 (392)
Q Consensus 90 ~~C~iC~~~~~~----~p--~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~ 132 (392)
-.|.||-+-.-. ++ .+-.|+-..|+.|++-- ..||.|+..+..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 568888775221 12 34468888899998632 359999986654
No 351
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=27.13 E-value=2e+02 Score=25.77 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 293 ~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
+.|...|++|+++. . +-.+.++ +-|...||--.+.|..+++.++|+...++|.+
T Consensus 173 e~a~~aY~~A~~iA-~--~L~pthP---irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-K--DLEPTHP---IRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-T--TSCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-H--hCCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46667777777775 2 2223333 45677788888999999999999887666554
No 352
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=26.57 E-value=2.4e+02 Score=22.26 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=40.3
Q ss_pred cCCH-HHH---HHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 289 GGDL-QAA---RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKV-ADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 289 ~g~l-~~A---~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l-~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
.|++ +++ .....++.+|..++.....- +.-.+++..|..| ..+...+.+.+.=.+.+++++.+++.+
T Consensus 42 ~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~--e~GgeiA~nL~~LY~y~~~~LAn~~~d~~~l~ev~~ll~~l 113 (130)
T 1orj_A 42 QVNELEKRKEFVENIDRVYDIISALKSFLDH--EKGKEIAKNLDTIYTIILNTLVKVDKTKEELQKILEILKDL 113 (130)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHTCCT--TTSHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccCcHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4677 666 66677888887665544322 1223677666665 444455544444456667777777776
No 353
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.45 E-value=7.3 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.684 Sum_probs=19.4
Q ss_pred eccccccccccC-----ceecccCcHhHHHhHHhc
Q 016262 91 SCMICQALLFEC-----SKCTPCSHVYCKACISRF 120 (392)
Q Consensus 91 ~C~iC~~~~~~~-----p~~~~C~h~fC~~Ci~~~ 120 (392)
-||-|...+..+ ..+..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 388777754322 223359999998887766
No 354
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=26.00 E-value=3.9e+02 Score=24.54 Aligned_cols=82 Identities=4% Similarity=-0.135 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhcCCCchhHHHhhcc
Q 016262 295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN--EDVAVDGFQEAIKRLESLTLKPEEAGLEQRCWN 372 (392)
Q Consensus 295 A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~--~~~A~~~~~~al~ile~l~~~~~~a~l~~~~~~ 372 (392)
....|+++|.....++...+.+ -...+.-+-+...+|. +++++..+++++ ..+|.+...-...+-
T Consensus 86 ~~~~l~~EL~~~~~~L~~~PKn-------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l------~~dprNy~AW~~R~~ 152 (331)
T 3dss_A 86 SAALVKAELGFLESCLRVNPKS-------YGTWHHRCWLLSRLPEPNWARELELCARFL------EADERNFHCWDYRRF 152 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHH------HHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHhccCcccHHHHHHHHHHHH------HhCCCCHHHHHHHHH
Confidence 3445666666666666666654 3344555666677774 677777777766 456666554444444
Q ss_pred hhHHHHHHh-hhccccchhc
Q 016262 373 SSTTNFQKN-HLNQLPKFRS 391 (392)
Q Consensus 373 ~~~~~~l~~-~~~~l~~~~~ 391 (392)
++..++. +..+|.++.+
T Consensus 153 --vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 153 --VAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp --HHHHTTCCHHHHHHHHHH
T ss_pred --HHHHhCcCHHHHHHHHHH
Confidence 5555554 3556665543
No 355
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.75 E-value=11 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.821 Sum_probs=18.7
Q ss_pred ccCceecccCcHhHHHhHHhc---CCCCCCCcC
Q 016262 100 FECSKCTPCSHVYCKACISRF---KDCPLCGAD 129 (392)
Q Consensus 100 ~~~p~~~~C~h~fC~~Ci~~~---~~CP~C~~~ 129 (392)
..++.+..||+.| ..++ ..||.|+..
T Consensus 65 v~p~~C~~CG~~F----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVF----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBC----CCCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCee----cccCCCCCCCcCCCCC
Confidence 3488999999999 2233 359999863
No 356
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=25.28 E-value=2.4e+02 Score=24.76 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016262 292 LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351 (392)
Q Consensus 292 l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al 351 (392)
.+.|...|++|+++...- -.+.++ +-|...||--.+.+..+++.++|+...++|.
T Consensus 149 ~e~a~~aY~~A~~iA~~~--L~pthP---irLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKE--MPPTNP---IRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778888888877542 233333 3566777877899999999999888655554
No 357
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.19 E-value=9.5 Score=26.17 Aligned_cols=31 Identities=19% Similarity=0.649 Sum_probs=18.9
Q ss_pred eeccccccccccC-----ceecc--cCcHhHHHhHHhc
Q 016262 90 LSCMICQALLFEC-----SKCTP--CSHVYCKACISRF 120 (392)
Q Consensus 90 ~~C~iC~~~~~~~-----p~~~~--C~h~fC~~Ci~~~ 120 (392)
-.||-|...+... -.... |++.||..|...|
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 4677777765521 12223 7788888777665
No 358
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.67 E-value=3.4e+02 Score=26.36 Aligned_cols=60 Identities=12% Similarity=-0.083 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350 (392)
Q Consensus 278 ~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~a 350 (392)
+.+.|=..+...|++++|...|++..+. .-.+. ..+++-+=..+...|+.++|...|++.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd--------~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPR--------LRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCc--------cceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 4566666777778888888888765321 11122 345555666667777777777766553
No 359
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=24.24 E-value=1.1e+02 Score=24.67 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch
Q 016262 322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 364 (392)
Q Consensus 322 dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a 364 (392)
..|..|-+.|.++...|+++.|--+|-+-+.++..+..||+-.
T Consensus 40 rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk 82 (144)
T 2a9u_A 40 HSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFK 82 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 4577777889999999999999999999999997776666543
No 360
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=23.66 E-value=2.4e+02 Score=27.74 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 016262 292 LQAARSYYVRSLNVRRDAVK 311 (392)
Q Consensus 292 l~~A~~~~e~aL~i~~~~~~ 311 (392)
.++|+..|++++...+.+..
T Consensus 448 A~kAi~~Y~~Ai~~L~k~~~ 467 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKAAQ 467 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 46888899999888887653
No 361
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=23.19 E-value=2.2e+02 Score=22.91 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH-HHHHHhc--CCHHHHHHH
Q 016262 272 IHTLSVSLNKIGDLKY--YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKV-ADVDRSI--GNEDVAVDG 346 (392)
Q Consensus 272 ~~~l~~~l~~lg~l~~--~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l-~~v~~~l--g~~~~A~~~ 346 (392)
.....-.+..|..... ..++++++.....++.+|..++.....-. .+|+..|..| ..+...+ .+.+.=.+.
T Consensus 27 ~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~sLd~e----geiA~nL~~LY~y~~~~L~~Ani~~D~~~ 102 (145)
T 1vh6_A 27 LMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFTLNRN----IELSASMGAMYDYMYRRLVQANIKNDTGM 102 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 3344444444444443 45788888888888888775543222110 2445444443 2222222 222222445
Q ss_pred HHHHHHHHHHh
Q 016262 347 FQEAIKRLESL 357 (392)
Q Consensus 347 ~~~al~ile~l 357 (392)
+++++.+++.+
T Consensus 103 ldev~~ll~~L 113 (145)
T 1vh6_A 103 LAEVEGYVTDF 113 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666666665
No 362
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.96 E-value=19 Score=28.62 Aligned_cols=31 Identities=23% Similarity=0.760 Sum_probs=22.3
Q ss_pred ceecccccccccc---CceecccCcHhHHHhHHh
Q 016262 89 PLSCMICQALLFE---CSKCTPCSHVYCKACISR 119 (392)
Q Consensus 89 ~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~ 119 (392)
...|.+|...|.. ..-+..||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3579999886542 245668999999988643
No 363
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.94 E-value=11 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.734 Sum_probs=16.4
Q ss_pred eecccCcHhHHHhHHhc--CCCCCCCcCCc
Q 016262 104 KCTPCSHVYCKACISRF--KDCPLCGADIE 131 (392)
Q Consensus 104 ~~~~C~h~fC~~Ci~~~--~~CP~C~~~~~ 131 (392)
.++.||+.|-..=+... ..||.|+..+-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 35566666654433333 24999987553
No 364
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=22.76 E-value=2.4e+02 Score=26.57 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHhhcCCCCCc-hh-hHHHHHHHHHHHHH-------HhcC
Q 016262 274 TLSVSLNKIGDLKYYG------GDLQAARSYYVRSLNVRRDAVKRHSNVPS-QV-LDVAVSLAKVADVD-------RSIG 338 (392)
Q Consensus 274 ~l~~~l~~lg~l~~~~------g~l~~A~~~~e~aL~i~~~~~~~~~~~~~-~~-~dla~sl~~l~~v~-------~~lg 338 (392)
++.-.+-++|-++..+ ..+..|..+|.+|--+..-+.+.....+. .+ .++...|..+.... ..+.
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~ 200 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLN 200 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444454444333 25789999999988887766555433222 12 24555566543221 1111
Q ss_pred ----CH---------HHHHHHHHHHHHHHHHh
Q 016262 339 ----NE---------DVAVDGFQEAIKRLESL 357 (392)
Q Consensus 339 ----~~---------~~A~~~~~~al~ile~l 357 (392)
+. .++.++|+++.+.+...
T Consensus 201 ~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~ 232 (392)
T 1zb1_A 201 DQISSKQYTLISKLSRATCNLFQKCHDFMKEI 232 (392)
T ss_dssp STTGGGCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 24557889998888876
No 365
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.74 E-value=1.6e+02 Score=24.69 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHhhhchhhHHHHhhhcHHHHHHHHHhcCCChHHHHHHHhhhcccccccccccchhHHHhHHHHH-----HHHHHhCCCC
Q 016262 193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADS-----VEFLMKLPMD 267 (392)
Q Consensus 193 ~~~~g~~~~A~~~l~~c~~~~~~~l~~~~~~~~~C~~h~~~L~~fC~~C~~~gdhh~a~~~~e~~-----~~~~~~L~~~ 267 (392)
|+..||++.|..... -.......+.+++.+...|+++-|...|... +.++-.+.+.
T Consensus 15 AL~lg~l~~A~e~a~-------------------~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 15 ALEYGNLDAALDEAK-------------------KLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD 75 (177)
T ss_dssp HHHTTCHHHHHHHHH-------------------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHhcCCHHHHHHHHH-------------------HhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC
Q ss_pred chHHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Q 016262 268 DLEIIHTLSVS-----LNKIGDLKYYGGDLQAARSYYVRS 302 (392)
Q Consensus 268 ~~e~~~~l~~~-----l~~lg~l~~~~g~l~~A~~~~e~a 302 (392)
...+......+ .+-....+..+|+++++++.|.++
T Consensus 76 ~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHC
No 366
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=22.48 E-value=2.7e+02 Score=24.71 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 293 ~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
+.|...|++|+++...- -.+.++ +-|...||--.+.|..+++.++|+...++|.+
T Consensus 148 ~~a~~aY~~A~~iA~~~--L~pthP---irLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEH--MQPTHP---IRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777888888876542 223333 45667788778999999999998886655543
No 367
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.84 E-value=2e+02 Score=27.66 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 277 ~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
.....|..++...|++.+|.....+.. .+..... ........+-....++...+++.+|...+.++..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~---~Et~~~~-----~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQ---VETYGSM-----EMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHCSSS-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH---HHHHhcc-----cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345678899999999999988776543 2222211 1223344444556777888999999888887643
No 368
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.81 E-value=2.6e+02 Score=24.97 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016262 293 QAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352 (392)
Q Consensus 293 ~~A~~~~e~aL~i~~~~~~~~~~~~~~~~dla~sl~~l~~v~~~lg~~~~A~~~~~~al~ 352 (392)
+.|...|++|+++...- -.+.++ +-|...||--.+.+..+++.++|+...++|.+
T Consensus 173 e~a~~aY~~A~~iA~~~--L~pThP---irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTE--LPPTHP---IRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--CCCCCc---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677888888876542 223333 35666778778999999999998886655543
No 369
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.57 E-value=2.3e+02 Score=20.45 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016262 287 YYGGDLQAARSYYVRSLNVRRDAVKRHSN 315 (392)
Q Consensus 287 ~~~g~l~~A~~~~e~aL~i~~~~~~~~~~ 315 (392)
...|++++|+.+|.++++....+....++
T Consensus 27 D~~g~y~eAl~lY~~Aie~ll~alk~e~d 55 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDLLLQVLKGTKD 55 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 56799999999999999988887766554
No 370
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.48 E-value=61 Score=30.92 Aligned_cols=40 Identities=28% Similarity=0.626 Sum_probs=26.7
Q ss_pred ceeccccccccccCceec--ccCcHhHHHhHHhc--------------CCCCCCCcC
Q 016262 89 PLSCMICQALLFECSKCT--PCSHVYCKACISRF--------------KDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~--~C~h~fC~~Ci~~~--------------~~CP~C~~~ 129 (392)
+..|.+|-+-=. =..+- .|...||..||.+. |.|=.|.-.
T Consensus 93 ~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456777765411 22333 78899999999775 668888654
No 371
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.48 E-value=22 Score=26.89 Aligned_cols=10 Identities=30% Similarity=1.202 Sum_probs=8.8
Q ss_pred HhHHHhHHhc
Q 016262 111 VYCKACISRF 120 (392)
Q Consensus 111 ~fC~~Ci~~~ 120 (392)
-||+.|+..|
T Consensus 42 GFCRNCLskW 51 (105)
T 2o35_A 42 GFCRNCLSNW 51 (105)
T ss_dssp SCCHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999988
No 372
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=21.42 E-value=20 Score=32.31 Aligned_cols=34 Identities=26% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l 357 (392)
|..+-+.|.-....|++++|+..|+++++++...
T Consensus 23 Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 23 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4444455556677899999999999999999887
No 373
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.38 E-value=23 Score=26.82 Aligned_cols=10 Identities=20% Similarity=1.258 Sum_probs=8.6
Q ss_pred HhHHHhHHhc
Q 016262 111 VYCKACISRF 120 (392)
Q Consensus 111 ~fC~~Ci~~~ 120 (392)
-||+.|+..|
T Consensus 41 GFCRNCLskW 50 (104)
T 3fyb_A 41 DFCRNCLAKW 50 (104)
T ss_dssp SCCHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999888
No 374
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.26 E-value=3.4e+02 Score=25.96 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=3.8
Q ss_pred HHHHHhhhccccc
Q 016262 227 CSQLGAVLGMLGD 239 (392)
Q Consensus 227 C~~h~~~L~~fC~ 239 (392)
|-...+-+..||-
T Consensus 8 c~~~~~~fG~~CP 20 (411)
T 3ghg_C 8 CCILDERFGSYCP 20 (411)
T ss_dssp ------CCSCEEE
T ss_pred ceecCcccCCcCC
Confidence 4433445555553
No 375
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.10 E-value=2.1e+02 Score=22.78 Aligned_cols=36 Identities=8% Similarity=-0.060 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchh
Q 016262 324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG 365 (392)
Q Consensus 324 a~sl~~l~~v~~~lg~~~~A~~~~~~al~ile~l~~~~~~a~ 365 (392)
..-|=-+|..+-++|+|++|+.+.+..+ ...|++..
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL------~~eP~N~Q 113 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLF------EHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH------TTCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH------hhCCCCHH
Confidence 3345567788899999999998777654 55555543
No 376
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.07 E-value=43 Score=21.56 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=18.2
Q ss_pred ceeccccccccccCceecccCcHhHHHhHHhcCCCCCCCcC
Q 016262 89 PLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGAD 129 (392)
Q Consensus 89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~CP~C~~~ 129 (392)
...|.+|--++. +..-.+ +.|= =+..-|.||.|+..
T Consensus 4 ~y~C~vCGyvyd-~~~Gd~--t~f~--~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYD-PAEHDN--VPFD--QLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEEC-GGGGTT--CCGG--GSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEe-CCcCCC--cchh--hCCCCCcCcCCCCc
Confidence 467888876643 211111 1110 11122679999875
No 377
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.60 E-value=2e+02 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 016262 337 IGNEDVAVDGFQEAIKRLESL 357 (392)
Q Consensus 337 lg~~~~A~~~~~~al~ile~l 357 (392)
.|+.+.|+++|.+.|..|+.=
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 499999999999999999883
No 378
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.07 E-value=5.7e+02 Score=24.79 Aligned_cols=39 Identities=10% Similarity=-0.078 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016262 270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD 308 (392)
Q Consensus 270 e~~~~l~~~l~~lg~l~~~~g~l~~A~~~~e~aL~i~~~ 308 (392)
.....+....+.+........+.+.....|...|+.+..
T Consensus 83 ~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~ 121 (491)
T 1m1j_A 83 TSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIV 121 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 344444444455555555555666666666666654443
Done!