Query 016266
Match_columns 392
No_of_seqs 143 out of 1692
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 10:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 6.9E-27 2.4E-31 228.3 30.3 334 25-386 23-388 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.9E-26 1E-30 224.5 28.3 337 28-387 28-389 (451)
3 2gfp_A EMRD, multidrug resista 99.9 8.8E-24 3E-28 202.4 14.3 288 64-386 40-332 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 6.4E-22 2.2E-26 196.3 28.3 303 65-387 60-429 (491)
5 4gc0_A D-xylose-proton symport 99.9 1.7E-21 5.7E-26 193.1 26.8 305 65-384 61-410 (491)
6 2xut_A Proton/peptide symporte 99.8 9.3E-18 3.2E-22 167.7 24.5 134 63-212 58-197 (524)
7 2cfq_A Lactose permease; trans 99.8 4.7E-19 1.6E-23 172.5 12.6 308 50-384 34-352 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.0 1.9E-08 6.5E-13 97.6 17.1 171 28-214 252-434 (451)
9 2cfq_A Lactose permease; trans 98.8 8.3E-08 2.8E-12 92.8 15.1 125 71-211 271-397 (417)
10 3o7q_A L-fucose-proton symport 98.7 2.3E-07 7.7E-12 89.6 15.1 105 66-183 302-407 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.6 3.4E-07 1.1E-11 90.0 14.7 127 71-214 331-472 (491)
12 4gc0_A D-xylose-proton symport 98.4 2.4E-06 8.2E-11 83.8 13.5 136 71-218 324-468 (491)
13 2gfp_A EMRD, multidrug resista 98.4 9.3E-07 3.2E-11 83.6 10.1 97 282-386 33-130 (375)
14 2xut_A Proton/peptide symporte 98.2 1.1E-05 3.7E-10 79.9 11.9 90 281-378 51-142 (524)
15 2g9p_A Antimicrobial peptide l 57.5 5.8 0.0002 20.3 1.6 13 79-91 3-15 (26)
16 3arc_T Photosystem II reaction 24.8 1E+02 0.0034 17.4 3.7 11 209-219 19-29 (32)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=6.9e-27 Score=228.29 Aligned_cols=334 Identities=10% Similarity=0.042 Sum_probs=215.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHHHhHhhh----ccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 25 NYTRDVHILSCAFLLIFLAYGAAQNLETTV----NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.++.+..+.+++++..........+.+.+ +.+........+.....+.+++++.|+++||+|||+++.++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 444455555555555444444444433443 3332222333556666777889999999999999999999999887
Q ss_pred HHHHh----hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHh
Q 016266 101 LFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176 (392)
Q Consensus 101 l~~~~----~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i 176 (392)
+.... ...++++.+++.|+++|++.+..++...++++++. |+|+|++++|+.....++|..+|+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76553 35689999999999999999999999999999886 78999999999999999999999999
Q ss_pred hhhhc-cCCCCC--------------------CCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhH
Q 016266 177 TLAVL-KDDKGG--------------------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYL 235 (392)
Q Consensus 177 ~~~~~-~~~~~~--------------------~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (392)
+..+. ...... ..+||.. |.+.+++..+..+..++.++|++++++++++ ++++.
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----~~~~~ 247 (438)
T 3o7q_A 173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP-YMIIVAIVLLVALLIMLTKFPALQSDNHSDA----KQGSF 247 (438)
T ss_dssp TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----STTSH
T ss_pred HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHcCCcccccccccc----cccch
Confidence 88776 332100 0017764 4444444333333334444433222111111 11111
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhh-hccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCC
Q 016266 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI-VTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLP 312 (392)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g 312 (392)
++ +..+.+++|+++......+......... ..+.+.+ .++..| ..+.+....+.+++.++++++.|+++||++
T Consensus 248 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 248 SA---SLSRLARIRHWRWAVLAQFCYVGAQTAC-WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HH---HHHHHTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hh---hHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2335678888877655433222211111 1223333 333334 456788889999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCccccchhhh
Q 016266 313 SITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTVTANPTLI 386 (392)
Q Consensus 313 ~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~~~a~~~~~ 386 (392)
||+.+ ..+.++..++.+. ..+.++ ....+..++.|++.+...+..+++..|.+|++++.+.+...
T Consensus 324 ~~~~~-~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
T 3o7q_A 324 PHKVL-AAYALIAMALCLI--SAFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV 388 (438)
T ss_dssp HHHHH-HHHHHHHHHHHHH--HHHCCH------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH
T ss_pred chHHH-HHHHHHHHHHHHH--HHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH
Confidence 88754 4566556555432 233332 23344457888999999999999999999977666665443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=2.9e-26 Score=224.49 Aligned_cols=337 Identities=9% Similarity=-0.059 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhhhcc---CCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETTVNT---EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA 104 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~ 104 (392)
+.+..+.++.++............+.+.. +...-.+..++......+++++.|+++||+|||+++.++.+++++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33444444444444443333333343332 222223345666667788899999999999999999999998887766
Q ss_pred h-hh----chhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhh
Q 016266 105 A-NL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179 (392)
Q Consensus 105 ~-~~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~ 179 (392)
. .+ +++++.+++.|+++|++.+..+++..++++|+. |+++|++++|+......+|..+|+.++..
T Consensus 108 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 108 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 46 788999999999999999999999888888876 77899999999999999999999998877
Q ss_pred hccCCCCCCCC-cchhHHHHHHHHHHHHHH-HHHhccCCcccccc---cccccc----chhhhhHHHHHHH--HHHhhcc
Q 016266 180 VLKDDKGGSTS-GTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEK---ETADAS----VNFYSYLVSLSKS--ITTLLAD 248 (392)
Q Consensus 180 ~~~~~~~~~~~-wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~--~~~~~~~ 248 (392)
+... .+ ||.. |++.+++.++..+ ..++++|+++..+. ++.+.+ ..++.+.+...++ ..+.+++
T Consensus 178 l~~~-----~g~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (451)
T 1pw4_A 178 GMAW-----FNDWHAA-LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN 251 (451)
T ss_dssp HHHH-----TCCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC
T ss_pred HHHH-----hccHHHH-HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcC
Confidence 6543 35 8875 5555555544333 34556654332110 000000 0000000000111 2356778
Q ss_pred chhHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCC--CCchhhHHHHHHH
Q 016266 249 VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIA 324 (392)
Q Consensus 249 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~--g~r~~~~~~g~~~ 324 (392)
|+++......+......... ..+.+.+.++..| ..+.+.+..+.+++.++++++.|++.||+ ++|+.+. .+..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG-VFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH-HHHHH
Confidence 88876655443333222111 2233333333334 44678889999999999999999999999 8887543 44444
Q ss_pred HH-HHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhhh
Q 016266 325 QV-VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLIR 387 (392)
Q Consensus 325 ~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~~ 387 (392)
.. ++++. +.+.++.+ .+...+..++.|++.+...+..++++.|.+|++ ++.+++.++.
T Consensus 330 ~~~~~~~~--~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 330 LVTIATIV--YWMNPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHH--TTSCCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHhcccC---HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 43 44332 23333222 356677778899998998999999999999865 6778887653
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=8.8e-24 Score=202.39 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=191.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 64 ~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
..+.......+++++.|+++||+|||+++.++..+..+.... ...++++.+++.|+++|++.+...+...+++.|+.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~-- 117 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY-- 117 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC--
Confidence 345556667788999999999999999999999888776664 46789999999999999999999999999999987
Q ss_pred hhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHH-HHHhccCCccccc
Q 016266 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGE 221 (392)
Q Consensus 143 ~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~ 221 (392)
|+|+|++++++.......|..+|+.++..+.++ .+||.. |.+.+++.++..+ ..+.+||++++++
T Consensus 118 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T 2gfp_A 118 --------ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC-YLFLLVLCAGVTFSMARWMPETRPVDA 183 (375)
T ss_dssp --------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH-HHHHHHHHHHHHCCCCCSSCCCSTTTC
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHHHHCcccCCCCc
Confidence 678999999999999999999999988876543 368764 4444444443333 2233444322211
Q ss_pred cccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcc--ccccchhhHHHHHHhHHHHH
Q 016266 222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAI 299 (392)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~gi~~~~ 299 (392)
++ + ++.++. .+.+++|+++................ ..+.+.+.++ +.+..+.+.+....+++..+
T Consensus 184 ~~--~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 184 PR--T---RLLTSY-------KTLFGNSGFNCYLLMLIGGLAGIAAF-EACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp CC--C---CTTTCS-------THHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cc--c---cHHHHH-------HHHhcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 11 0 011111 13456677665544333222221111 1222333322 23345678888999999999
Q ss_pred HHhhhhhhccCCCCchhhHHHHHHH-HHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCCc
Q 016266 300 CSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 300 g~~~~G~lsd~~g~r~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~~ 378 (392)
++++.|++.||.+++ . ..+... ...+.......+.+..+ .+..++..++.|++.+...+..++++.|.+|+++
T Consensus 251 ~~~~~~~l~~r~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 324 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTL--M-WQSVICCLLAGLLMWIPDWFGVMN---VWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLA 324 (375)
T ss_dssp HHHHHHTTTTHHHHH--H-HHHHHHHHHTSSSSSHHHHHHHHH---HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhhcccc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCccc
Confidence 999999999998762 2 233322 22221110111111111 2456677788999999999999999999999888
Q ss_pred cccchhhh
Q 016266 379 VTANPTLI 386 (392)
Q Consensus 379 ~~a~~~~~ 386 (392)
+.+.+.++
T Consensus 325 g~~~g~~~ 332 (375)
T 2gfp_A 325 GTAGALVG 332 (375)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 88888765
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=6.4e-22 Score=196.25 Aligned_cols=303 Identities=12% Similarity=-0.007 Sum_probs=183.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHh-hchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhh
Q 016266 65 LGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr-~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~ 142 (392)
.+.......+++++.|+++|| +|||+++..+.++..+.... ..+++++.+++.|+++|++.+...+...++++|+.
T Consensus 60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-- 137 (491)
T 4aps_A 60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY-- 137 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHc--
Confidence 455556667889999999999 89999999999888777664 46789999999999999999999999999999987
Q ss_pred hhhhcCCCccch--hhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc-CCccc
Q 016266 143 HASNHKLHEGTV--IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR-KEEDK 219 (392)
Q Consensus 143 ~~~~~~~~~~~~--rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~-~~~~~ 219 (392)
|+++ |+++++++....++|..+|+.++..+.++ .+||.. |.+.++..+++.+..++.+ +..++
T Consensus 138 --------~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 138 --------DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-----AGYHVA-FSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp --------SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHH-HHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred --------CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHH-HHHHHHHHHHHHHHHHHhCcccccc
Confidence 6666 78888888889999999999998877654 368875 5555554455444443332 21111
Q ss_pred c-ccccccccchhhhh-HHH--------------------------------------------HHHHHHHhhccch---
Q 016266 220 G-EKETADASVNFYSY-LVS--------------------------------------------LSKSITTLLADVR--- 250 (392)
Q Consensus 220 ~-~~~~~~~~~~~~~~-~~~--------------------------------------------~~~~~~~~~~~~~--- 250 (392)
+ ++++++.+..+.++ .+. ..++.....++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 1 00000000000000 000 0000000001111
Q ss_pred -hHHHHHHHHhhhHHhhhhhcccchhhhccccc--cchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhH----HHHHH
Q 016266 251 -MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV----SGGAI 323 (392)
Q Consensus 251 -~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~----~~g~~ 323 (392)
.+.+.............. ..+.+.+..+..+ ....+......+++..++.++.|+++||++||+... ..+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQG-SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGG-GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 111111111111111111 1122222222222 235667777888889999999999999999885322 24555
Q ss_pred HHHHHHHHHHhcc-----ccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchhhhh
Q 016266 324 AQVVVFLWILINY-----SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPTLIR 387 (392)
Q Consensus 324 ~~~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~~~~ 387 (392)
+..+++++..... ..+.+ .+...+..++.|++.+...+..++++.|.+|++ ++.+.+.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 429 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVS---PLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFL 429 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCC---THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcc---HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555433211100 11111 356677788999999998999999999999865 6778887653
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.89 E-value=1.7e-21 Score=193.13 Aligned_cols=305 Identities=9% Similarity=0.024 Sum_probs=173.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-h------------------hchhhHHHHHHHHHHhhhH
Q 016266 65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N------------------LFPSWYTMVPASLYLGFAA 125 (392)
Q Consensus 65 ~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~------------------~~~~~~~l~~~r~l~Gig~ 125 (392)
.+.++....+++++.|+++||+|||+++.++.+++.++.+. . .++++..+++.|+++|+|.
T Consensus 61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34455667788999999999999999999999988877654 2 3678999999999999999
Q ss_pred HHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCC---CCCCcchhHHHHHHHH
Q 016266 126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGV 202 (392)
Q Consensus 126 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~---~~~~wr~~~f~i~~~~ 202 (392)
|...+....|++|++ |+++||+..++.......|..++..++......... ...+||. .+.+..+.
T Consensus 141 G~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 209 (491)
T 4gc0_A 141 GLASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY-MFASECIP 209 (491)
T ss_dssp HHHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH-HHHTTHHH
T ss_pred HHHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH-Hhhhhhhh
Confidence 999999999999987 889999999999988898888888877666543321 1223443 23332333
Q ss_pred HHHHHHHHHhccCCccc----cccccccc---cc-------hhhhhHHHH---HHH---HHHhhccchhHHHHHHHHhhh
Q 016266 203 ITLGTILMCFLRKEEDK----GEKETADA---SV-------NFYSYLVSL---SKS---ITTLLADVRMLLIIPLFAYSG 262 (392)
Q Consensus 203 ~~~~~~~~~~~~~~~~~----~~~~~~~~---~~-------~~~~~~~~~---~~~---~~~~~~~~~~~~l~~~~~~~g 262 (392)
.++..+..++++|+++. .++++.+. +. .+....++. .++ .....+.++.........+..
T Consensus 210 ~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (491)
T 4gc0_A 210 ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQ 289 (491)
T ss_dssp HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHH
Confidence 33333333445554321 11110000 00 000000000 000 011122222222221111111
Q ss_pred HHhhhhhcccchhhhcc-ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCC
Q 016266 263 LQQAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSG 341 (392)
Q Consensus 263 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~ 341 (392)
+........|.+.+... ..............++...++.++.+++.||+|||+.. ..+.....++++.+........+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHHHhcccc
Confidence 11111112233333221 11222344556778888999999999999999999754 45555555543332111222211
Q ss_pred ccchHHHHHHHHHHhh-hhhhhhhHHHHHHHhhccCC-ccccchh
Q 016266 342 VLGTLYPLIMAALLGI-GDGVLNTQLSALLGILFKHD-TVTANPT 384 (392)
Q Consensus 342 ~~~~~~~~i~~~l~G~-~~~~~~~~~~a~~~~~~p~~-~~~a~~~ 384 (392)
.....+...++.. ......+..+.+.+|++|++ |+.+++.
T Consensus 369 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 369 ---GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHH
Confidence 1222222222222 23334567789999999965 4556553
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=9.3e-18 Score=167.68 Aligned_cols=134 Identities=12% Similarity=0.112 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhh-chhHHHHHhhhHHHHHHHh-hhch-hhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 63 ISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAA-NLFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 63 ~~~~~~~~~~~v~~~~~g~l~dr~-G~r~~l~~g~~~~~l~~~~-~~~~-~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
...+.......+++++.|+++||+ |||+++.++.+++++.... ..++ +++.+++.|++.|++.+...+...++++++
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 137 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQ 137 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 345566667778899999999999 9999999999888776654 3667 888889999999999999999988988888
Q ss_pred hhhhhhhcCCCccchhhhhHHH---HHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHh
Q 016266 140 ALSHASNHKLHEGTVIGSFNGE---FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF 212 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~---~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~ 212 (392)
. |+++|+++.+. .....++|..+|+.++..+... .+||.. |.+.+++.+++.+..++
T Consensus 138 ~----------~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 138 F----------DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-----FGAAVA-FGIPGVLMFVATVFFWL 197 (524)
T ss_dssp C----------STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----SCHHHH-HHHHHHHHHHHHHHHHS
T ss_pred c----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHH-HHHHHHHHHHHHHHHHH
Confidence 6 77888876666 7788888999998887766543 368774 55555554544444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.79 E-value=4.7e-19 Score=172.46 Aligned_cols=308 Identities=13% Similarity=0.054 Sum_probs=164.6
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh----hhchhhH-HHHHHHHHHhhh
Q 016266 50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWY-TMVPASLYLGFA 124 (392)
Q Consensus 50 l~~~l~~~~~~g~~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~----~~~~~~~-~l~~~r~l~Gig 124 (392)
+++.++.+........+.......+++++.|+++||+|||+++.++..++.+.... ...+... .++..+.+.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333455666677889999999999999999999888765432111 1112111 123355666666
Q ss_pred HHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHH
Q 016266 125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT 204 (392)
Q Consensus 125 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~ 204 (392)
.+..++.......++.++ .+++|+..+|......++|..+|+.++..+.. .+||.. |++.++..+
T Consensus 114 ~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------~~~~~~-f~~~~~~~~ 178 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGASIVGIMFT------INNQFV-FWLGSGCAL 178 (417)
T ss_dssp TTHHHHTTHHHHHHHHHH--------HHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------HCSHHH-HTTTTTTTT
T ss_pred HHHHHhhhHHHHHHHHHH--------hhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hchhHH-HHHHHHHHH
Confidence 655555444444444321 12356777776655567777788877766653 247653 433333322
Q ss_pred HHHHHHHhccCCccc-cccccccccchhhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHh-hh--hhcccchhhhc-c
Q 016266 205 LGTILMCFLRKEEDK-GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ-AF--VWAEFTKEIVT-P 279 (392)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~--~~~~~~~~~~~-~ 279 (392)
+..+..++.+|++++ .++++.+.+.+++.+. ++..+.+++|+++......+...... .+ +.+.|...... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSL----KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254 (417)
T ss_dssp THHHHSCSSCCCCSCSSCSSSSSSSCCCCCCH----HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHcCcccccccccccccccccccccH----HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222222322211 1001000000111111 22335677888765443322111111 11 11111111111 1
Q ss_pred ccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhh
Q 016266 280 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD 359 (392)
Q Consensus 280 ~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~ 359 (392)
+.+.+..++...+..++.+++.++.|+++||+|||+.+ ..+.++..+.++. ....++ .+.+++..++.+++.
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l-~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~~~~ 326 (417)
T 2cfq_A 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL-LLAGTIMSVRIIG--SSFATS-----ALEVVILKTLHMFEV 326 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHH--HTTCCS-----HHHHHHHTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH-HHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHH
Confidence 11233456777788888999999999999999988754 4566555555332 233332 245556666777777
Q ss_pred hhhhhHHHHHHHhhccCC-ccccchh
Q 016266 360 GVLNTQLSALLGILFKHD-TVTANPT 384 (392)
Q Consensus 360 ~~~~~~~~a~~~~~~p~~-~~~a~~~ 384 (392)
+...+...+++.|.+|++ ++++++.
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 327 PFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 777777889999999864 4556665
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.95 E-value=1.9e-08 Score=97.57 Aligned_cols=171 Identities=12% Similarity=-0.036 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHhhhccC-CCchhHHH----HHHHHHHhhhhhhHHHHHHhh--chhHHHHHhhhHHH
Q 016266 28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISL----GILYTSFTCFSLVASLVVRVL--GSKNALILGTTGYW 100 (392)
Q Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~~----~~~~~~~~v~~~~~g~l~dr~--G~r~~l~~g~~~~~ 100 (392)
++++.+.+..++....+.......+.+..+ .+.+.... +.......++.++.|++.||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 444455555555444444444444444333 34443333 333334456778899999999 99999988876655
Q ss_pred -HHHHhh-hc--hhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHH-hhhhhhH
Q 016266 101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL 175 (392)
Q Consensus 101 -l~~~~~-~~--~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~-g~~~G~~ 175 (392)
+..... .. .+...+...-++.|++.+...+....++.+.. |+++||+++|+....... |..+|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 443332 33 35666666778889888887777777777765 778999999999998998 9999998
Q ss_pred hhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 176 i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
+.+.+.+.. +++.. |.+.+++.+++.++.++++
T Consensus 402 ~~g~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFF-----GWDGG-FMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSS-----CSHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CcHHH-HHHHHHHHHHHHHHHHHHH
Confidence 888776543 45543 5565666666555544443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.79 E-value=8.3e-08 Score=92.77 Aligned_cols=125 Identities=17% Similarity=0.095 Sum_probs=86.5
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++.++.|++.||+|||+++..+..+.++.... ...++...+++...+.+++.+...+....+.+|..
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 341 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------- 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 34456788999999999999998887776654433 34566666666777778877666666667777775
Q ss_pred CccchhhhhHHH-HHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 016266 150 HEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC 211 (392)
Q Consensus 150 ~~~~~rg~~~g~-~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~ 211 (392)
|++.||.+.|. +.....+|..+|+.+.+.+.+.. +++. .|.+.+++.+++.++.+
T Consensus 342 -p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-----g~~~-~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----GFQG-AYLVLGLVALGFTLISV 397 (417)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-----HHHH-HHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-----CcHH-HHHHHHHHHHHHHHHHH
Confidence 78899999887 35666788888888877665432 3433 35555555555555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.70 E-value=2.3e-07 Score=89.63 Aligned_cols=105 Identities=6% Similarity=-0.174 Sum_probs=73.0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhh
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA 144 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~ 144 (392)
+.......++.++.|++.||+|||+++..+.++..+.... ...++...++.. ++.|++.+..++....+..+..
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~---- 376 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNL---- 376 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhc----
Confidence 3344455677889999999999999999988776665443 345555544433 7888888887777666554443
Q ss_pred hhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccC
Q 016266 145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183 (392)
Q Consensus 145 ~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~ 183 (392)
|+ +|+.+.++.. ...+|..+|+.+.+.+.+.
T Consensus 377 ------~~-~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 377 ------GQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp ------GG-GHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred ------cc-cccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44 4888888665 4567888888877766654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.64 E-value=3.4e-07 Score=90.02 Aligned_cols=127 Identities=10% Similarity=-0.068 Sum_probs=83.8
Q ss_pred HHhhhhhhHHHHHHhhchhHHHH-----HhhhHHHHHHHhh-hc---------hhhHHHHHHHHHHhhhHHHHHhhhhHH
Q 016266 71 SFTCFSLVASLVVRVLGSKNALI-----LGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGEGTY 135 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~-----~g~~~~~l~~~~~-~~---------~~~~~l~~~r~l~Gig~g~~~~~~~~~ 135 (392)
...++.++.+++.||+|||+... .+..+..+..... .. .++..++..-++.|++.+...+....+
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 410 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSV 410 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44466788899999999987654 4444443333221 21 255666667789999998888888888
Q ss_pred HHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcc
Q 016266 136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR 214 (392)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~ 214 (392)
+.+.. |+++||+++|+......+|..+|+.+...+... +... .|.+.+++.+++.+..++..
T Consensus 411 ~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 411 TTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------SEVA-YFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------STTH-HHHHTHHHHHHHHHHHHHC-
T ss_pred HHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88876 788999999999999999999998887665432 2222 25555555555444444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.41 E-value=2.4e-06 Score=83.79 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=76.6
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh--h-h---chhhHHHHHHHHHHhhhHHH-HHhhhhHHHHHHhhhh
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-L---FPSWYTMVPASLYLGFAASI-IWVGEGTYLTAAALSH 143 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~--~-~---~~~~~~l~~~r~l~Gig~g~-~~~~~~~~~~~~~~~~ 143 (392)
...++.++++.+.||+|||+.+..+..+..+.... . . .+++..++ .-.+...+.+. ..+....|.+|..
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~f--- 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLSEIF--- 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHhC---
Confidence 44567788999999999999998888766543322 1 1 12222222 11111111111 1233456777775
Q ss_pred hhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCC-CCCCCcchhHHHHHHHHHHHHHHHH-HhccCCcc
Q 016266 144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTILM-CFLRKEED 218 (392)
Q Consensus 144 ~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~-~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~~ 218 (392)
|.+.|++++|+..+...++..+++.+...+..... ....++.. .|++++++.+++.+.. +++||++.
T Consensus 400 -------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 400 -------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF-SYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp -------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred -------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHheecCCCC
Confidence 88899999998877777777666654433321100 00012222 2566777766666543 66777643
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.40 E-value=9.3e-07 Score=83.62 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=76.8
Q ss_pred ccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhh
Q 016266 282 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 361 (392)
Q Consensus 282 g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~ 361 (392)
+.++.+.+.+.+.++..+++++.|+++||+|||+.+ ..+.++..++.+.. ...++ .+.+++..++.|++.+.
T Consensus 33 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~g~~~~~ 104 (375)
T 2gfp_A 33 REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVA--VTTSS-----LTVLIAASAMQGMGTGV 104 (375)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-HHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999999865 46666666664432 23333 46778888999999999
Q ss_pred hhhHHHHHHHhhcc-CCccccchhhh
Q 016266 362 LNTQLSALLGILFK-HDTVTANPTLI 386 (392)
Q Consensus 362 ~~~~~~a~~~~~~p-~~~~~a~~~~~ 386 (392)
..+..++++.|.+| ++++.+++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (375)
T 2gfp_A 105 GGVMARTLPRDLYERTQLRHANSLLN 130 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCCSHHHHHH
T ss_pred hhhhHHHHHHHHCCHHHHHHHHHHHH
Confidence 99999999999997 56677777654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.16 E-value=1.1e-05 Score=79.92 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=71.6
Q ss_pred cccchhhHHHHHHhHHHHHHHhhhhhhccCC-CCchhhHHHHHHHHHHHHHHHHhcccc-CCCccchHHHHHHHHHHhhh
Q 016266 281 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTLYPLIMAALLGIG 358 (392)
Q Consensus 281 ~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~-g~r~~~~~~g~~~~~i~~~~~~~~~~~-~~~~~~~~~~~i~~~l~G~~ 358 (392)
.+..+.+.+...+.++..+++++.|+++||+ |||+.+ .++.++..++.++ ..+.+ + .+.+++..++.|++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~-~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~g~~ 122 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI-LWLSLIYCVGHAF--LAIFEHS-----VQGFYTGLFLIALG 122 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH-HHHHHHHHHHHHH--HHHTSSC-----HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHH--HHHhccc-----HHHHHHHHHHHHHh
Confidence 3445788999999999999999999999999 998854 4666666666443 23444 3 46777888899999
Q ss_pred hhhhhhHHHHHHHhhccCCc
Q 016266 359 DGVLNTQLSALLGILFKHDT 378 (392)
Q Consensus 359 ~~~~~~~~~a~~~~~~p~~~ 378 (392)
.+...+..++++.|.+|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 123 SGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHTTHHHHHHHHHHTCSTTT
T ss_pred ccccchhHHHHHHHHcCccc
Confidence 99999999999999998654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.46 E-value=5.8 Score=20.34 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=11.0
Q ss_pred HHHHHHhhchhHH
Q 016266 79 ASLVVRVLGSKNA 91 (392)
Q Consensus 79 ~g~l~dr~G~r~~ 91 (392)
.|.+.++||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5789999999965
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.80 E-value=1e+02 Score=17.38 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.4
Q ss_pred HHHhccCCccc
Q 016266 209 LMCFLRKEEDK 219 (392)
Q Consensus 209 ~~~~~~~~~~~ 219 (392)
.+.++|||++.
T Consensus 19 FAI~FRePPri 29 (32)
T 3arc_T 19 FAIFFREPPRI 29 (32)
T ss_dssp HHHHTSCCCCC
T ss_pred HhhhhcCCCCC
Confidence 45778887653
Done!