Query 016266
Match_columns 392
No_of_seqs 143 out of 1692
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 10:42:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016266.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016266hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.9 8.8E-25 6.4E-29 210.7 30.3 303 63-386 63-385 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.8 7E-19 5.1E-23 165.5 21.3 333 26-384 5-352 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.1 8.5E-10 6.2E-14 102.2 14.6 131 71-217 271-404 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 98.8 6.1E-08 4.4E-12 91.2 15.4 129 66-210 292-427 (447)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 10.8 1.1E+02 0.0081 15.3 2.8 18 27-44 13-30 (34)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 6.2 1.8E+02 0.013 14.1 3.4 9 210-218 20-28 (30)
7 d1vk5a_ a.220.1.1 (A:) Hypothe 4.2 1.4E+02 0.0099 20.3 1.0 10 4-13 63-72 (121)
8 d3cx5h1 f.23.13.1 (H:2-94) Ubi 3.9 4E+02 0.029 17.3 3.3 38 6-44 29-69 (93)
9 d2e74d2 f.23.12.1 (D:12-45) IS 3.3 3.6E+02 0.026 13.6 2.6 19 114-132 10-28 (34)
10 d2iuba2 f.17.3.1 (A:286-349) M 3.2 4.9E+02 0.036 15.0 4.1 20 196-215 43-62 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=8.8e-25 Score=210.67 Aligned_cols=303 Identities=10% Similarity=-0.042 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hh----chhhHHHHHHHHHHhhhHHHHHhhhhHHHH
Q 016266 63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL----FPSWYTMVPASLYLGFAASIIWVGEGTYLT 137 (392)
Q Consensus 63 ~~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~----~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~ 137 (392)
+..+.+...+++++++.|+++||+|||+++.++.++.++..+. .. .+++..+++.|++.|++.+..++....+++
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 142 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3456677788899999999999999999999999887765543 22 357778899999999999999998888888
Q ss_pred HHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHH-HHHHHHhccCC
Q 016266 138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKE 216 (392)
Q Consensus 138 ~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~-~~~~~~~~~~~ 216 (392)
++. |+|+||+++|+...+..+|..+|+.+........ .+||.. +++..++.++ +++..++.+++
T Consensus 143 ~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----~~w~~~-~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 143 HWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----NDWHAA-LYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp TTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT----CCSTTC-THHHHHHHHHHHHHHHHHCCCS
T ss_pred HHH----------HhhcccccccccccccchhhhhhhhhhhhHhhhh----hccccc-chhhhhhHHHHHHHHHHhcccc
Confidence 876 7899999999999999999999988776655432 257765 4444444443 33444555554
Q ss_pred cccccc---ccccc--cc----h--hhhhHHHHHHHHHHhhccchhHHHHHHHHhhhHHhhhhhcccchhhhcccc--cc
Q 016266 217 EDKGEK---ETADA--SV----N--FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL--GV 283 (392)
Q Consensus 217 ~~~~~~---~~~~~--~~----~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--g~ 283 (392)
++.... ++.+. +. . ++.+.++ ....+.++++.++......++........ ..+.+.+..+.. +.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 284 (447)
T d1pw4a_ 208 PQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFAL 284 (447)
T ss_dssp STTTCCCSCTTTCCC-------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHBTTBSCCCH
T ss_pred hhhcccchhhhhhhhcccchhhccccccchhh--HHHHHHHcCchHHHHHHHhhhhhhhhhcc-hhhhhhhccccccccc
Confidence 322110 00000 00 0 0000011 11234567777766554433222211111 122233333333 34
Q ss_pred chhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHhccccCCCccchHHHHHHHHHHhhhhhhhh
Q 016266 284 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN 363 (392)
Q Consensus 284 s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~ 363 (392)
.+.+......+++.++++++.|+++||++|++......................+..+ .+...++.++.|++.+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 361 (447)
T d1pw4a_ 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN---PTVDMICMIVIGFLIYGPV 361 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC---HHHHHHHHHHHHHHHTHHH
T ss_pred chhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999876533221111111111111122222221 3566677788899988889
Q ss_pred hHHHHHHHhhccCCc-cccchhhh
Q 016266 364 TQLSALLGILFKHDT-VTANPTLI 386 (392)
Q Consensus 364 ~~~~a~~~~~~p~~~-~~a~~~~~ 386 (392)
+..+++..|.+|++. +.+.+..+
T Consensus 362 ~~~~~~~~~~~p~~~~g~~~g~~~ 385 (447)
T d1pw4a_ 362 MLIGLHALELAPKKAAGTAAGFTG 385 (447)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999999998654 66777543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.81 E-value=7e-19 Score=165.53 Aligned_cols=333 Identities=12% Similarity=0.060 Sum_probs=181.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhHHHhHhh-hccCCCchhH----HHHHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHH
Q 016266 26 YTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW 100 (392)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~g~~----~~~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~ 100 (392)
+.||.+.+++.+++.+..+.......+. +.++.+.+.. ..++......+++++.|+++||+|||+++.++..+..
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 3467778777777776665544333222 2222233322 2445555667889999999999999999999887766
Q ss_pred HHHHhh-hchh----hHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCCCccchhhhhHHHHHHHHHHhhhhhhH
Q 016266 101 LFVAAN-LFPS----WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL 175 (392)
Q Consensus 101 l~~~~~-~~~~----~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~g~~~~~~~~g~~~G~~ 175 (392)
+..... ..++ ....+..+.+.+.+.+...........+...+ +++++.+..+........+..+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc--------hhhhhHHHHHHHhhhhccccccccc
Confidence 544432 2222 22334456666666555544433333333211 2335556666666677777788888
Q ss_pred hhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhhhHHHHHHHHHHhhccchhHHHH
Q 016266 176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 255 (392)
Q Consensus 176 i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (392)
++..+... +|+...+.......+...+..+..+++++..++++.+.+..+... .. ...+..++++.+...
T Consensus 157 ~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 157 IVGIMFTI------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS-LK---LALELFRQPKLWFLS 226 (417)
T ss_dssp HHHHHHHH------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCC-HH---HHHHHTTSSHHHHHH
T ss_pred cccccccc------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccc-cc---ccccccccccccchh
Confidence 77766542 344432333333323333333344443322211111110011111 11 111233344333322
Q ss_pred HHHHhhhHHhh-h--hhcccchhhh-ccccccchhhHHHHHHhHHHHHHHhhhhhhccCCCCchhhHHHHHHHHHHHHHH
Q 016266 256 PLFAYSGLQQA-F--VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW 331 (392)
Q Consensus 256 ~~~~~~g~~~~-~--~~~~~~~~~~-~~~~g~s~~~~~~~~~gi~~~~g~~~~G~lsd~~g~r~~~~~~g~~~~~i~~~~ 331 (392)
........... + ....+..... ....+....+.......++..++..+.|++.||.++|+.+ .++.++..++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~-~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL-LLAGTIMSVRIIG 305 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch-hhhHHHHHHhhhc
Confidence 22111111111 1 1111111111 1112223456667888889999999999999999988754 4566556555432
Q ss_pred HHhccccCCCccchHHHHHHHHHHhhhhhhhhhHHHHHHHhhccCC-ccccchh
Q 016266 332 ILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TVTANPT 384 (392)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~i~~~l~G~~~~~~~~~~~a~~~~~~p~~-~~~a~~~ 384 (392)
....++ .+..++..++.|++.+...+..++++.|.+|++ ++++++.
T Consensus 306 --~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (417)
T d1pv7a_ 306 --SSFATS-----ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp --HHTCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred --cccccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence 234443 367778888999999999999999999999865 4667764
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.06 E-value=8.5e-10 Score=102.18 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=98.2
Q ss_pred HHhhhhhhHHHHHHhhchhHHHHHhhhHHHHHHHh-hhchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHHhhhhhhhcCC
Q 016266 71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL 149 (392)
Q Consensus 71 ~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~~~~-~~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~~~~~~~~~~~ 149 (392)
...++..+.+++.||+|+|+.+.++..+.++.... ...++.+.+++..++.|++.+..++...+++.+..
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------- 341 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------- 341 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC---------
Confidence 34456788999999999999999998887776554 46788888888889999999999999888888876
Q ss_pred CccchhhhhHHHHH-HHHHHhhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH-HhccCCc
Q 016266 150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE 217 (392)
Q Consensus 150 ~~~~~rg~~~g~~~-~~~~~g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~-~~~~~~~ 217 (392)
|+++||+..|... ....+|..+|+.+.+.+.+. .|++.. |.+.+++.++..++. +.+|++.
T Consensus 342 -~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 342 -EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGA-YLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HCHHHH-HHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHH-HHHHHHHHHHHHHHHHHhhcCCC
Confidence 8889999999754 44567888888887776653 356554 555565555544443 5555543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.76 E-value=6.1e-08 Score=91.16 Aligned_cols=129 Identities=13% Similarity=-0.092 Sum_probs=82.2
Q ss_pred HHHHHHHhhhhhhHHHHHHhhchhHHHHHhhhHHHHH---HHhh---hchhhHHHHHHHHHHhhhHHHHHhhhhHHHHHH
Q 016266 66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF---VAAN---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA 139 (392)
Q Consensus 66 ~~~~~~~~v~~~~~g~l~dr~G~r~~l~~g~~~~~l~---~~~~---~~~~~~~l~~~r~l~Gig~g~~~~~~~~~~~~~ 139 (392)
+.......++.++.|++.||++||+..........+. .... ...+....++.-++.|++.+...+....+..+.
T Consensus 292 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445577889999999999887554444333221 1111 234556666666788888877777777777776
Q ss_pred hhhhhhhcCCCccchhhhhHHHHHHHHHH-hhhhhhHhhhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 016266 140 ALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM 210 (392)
Q Consensus 140 ~~~~~~~~~~~~~~~rg~~~g~~~~~~~~-g~~~G~~i~~~~~~~~~~~~~~wr~~~f~i~~~~~~~~~~~~ 210 (392)
. |+++||+++|+....... |.++++.+.+.+.++ .||+.. +.+..++.+++.++.
T Consensus 372 ~----------p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-----~g~~~~-~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 372 A----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-----FGWDGG-FMVMIGGSILAVILL 427 (447)
T ss_dssp S----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----SCSHHH-HHHHHHHHHHHHHHH
T ss_pred c----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHH-HHHHHHHHHHHHHHH
Confidence 5 788999999987665555 556677777666554 356654 445555555554443
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=10.80 E-value=1.1e+02 Score=15.32 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHHHHH
Q 016266 27 TRDVHILSCAFLLIFLAY 44 (392)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~ 44 (392)
-|.|+..+++.+++|++.
T Consensus 13 ekgwlafslamlfvfial 30 (34)
T d1xmeb2 13 EKGWLAFSLAMLFVFIAL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 367888888888888764
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.18 E-value=1.8e+02 Score=14.13 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=5.8
Q ss_pred HHhccCCcc
Q 016266 210 MCFLRKEED 218 (392)
Q Consensus 210 ~~~~~~~~~ 218 (392)
++++|+|++
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 467787654
No 7
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.21 E-value=1.4e+02 Score=20.33 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=6.7
Q ss_pred CCCcCccCcc
Q 016266 4 VDSRDEEAPL 13 (392)
Q Consensus 4 ~~~~~~~~~~ 13 (392)
++|.||++||
T Consensus 63 igs~dE~k~l 72 (121)
T d1vk5a_ 63 FGTDSEEQRL 72 (121)
T ss_dssp TTCSSCCCCG
T ss_pred cCCccccCch
Confidence 4566777776
No 8
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.87 E-value=4e+02 Score=17.31 Aligned_cols=38 Identities=8% Similarity=0.137 Sum_probs=24.8
Q ss_pred CcCccCcc---ccccccccCccccchhHHHHHHHHHHHHHHH
Q 016266 6 SRDEEAPL---VADSLQVLTPKNYTRDVHILSCAFLLIFLAY 44 (392)
Q Consensus 6 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 44 (392)
|--||.|+ +.++- +-.++|...+++.+..-+.+.+..|
T Consensus 29 SPfeQrafag~~~~~i-fN~~RR~r~q~lyv~PPfi~~Y~iy 69 (93)
T d3cx5h1 29 SPYAQKPLQGIFHNAV-FNSFRRFKSQFLYVLIPAGIYWYWW 69 (93)
T ss_dssp CGGGBCCSCCSTTTTS-SSCSHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhhcccccchHHhcc-cHHHHhhhhhceEEcchHHHHHHHH
Confidence 45578888 44444 4467777778887777766666554
No 9
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.31 E-value=3.6e+02 Score=13.60 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhHHHHHhhh
Q 016266 114 MVPASLYLGFAASIIWVGE 132 (392)
Q Consensus 114 l~~~r~l~Gig~g~~~~~~ 132 (392)
++.++-+.|.+.|..++..
T Consensus 10 lltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 10 LLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHhhhhhHH
Confidence 3445667777777776653
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.18 E-value=4.9e+02 Score=15.01 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 016266 196 FIVFLGVITLGTILMCFLRK 215 (392)
Q Consensus 196 f~i~~~~~~~~~~~~~~~~~ 215 (392)
+++.++...+++++.+.+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~f~r 62 (64)
T d2iuba2 43 PVVLAVMGVIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444443444444444443
Done!