Query 016268
Match_columns 392
No_of_seqs 26 out of 28
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 10:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2f_A Diapausin; Ca-channel b 45.6 6 0.00021 28.6 0.7 13 213-225 10-23 (41)
2 3kdg_A DNA mismatch repair pro 19.2 92 0.0031 26.9 3.7 29 275-303 151-179 (197)
3 3ncv_A DNA mismatch repair pro 17.8 99 0.0034 27.6 3.7 29 275-303 174-202 (220)
4 4a54_B DCP2, mRNA decapping co 16.7 73 0.0025 23.7 2.1 10 65-74 39-48 (52)
5 2bpt_B Nucleoporin NUP1; nucle 15.0 1E+02 0.0034 21.9 2.4 33 84-122 3-35 (39)
6 1upt_B Golgi autoantigen, golg 12.4 1.1E+02 0.0037 23.6 2.1 23 265-291 10-32 (60)
7 3e0j_B DNA polymerase subunit 11.6 55 0.0019 28.3 0.3 28 261-288 14-43 (144)
8 2ao6_B NCOA-2, 14-MER fragment 10.4 93 0.0032 20.6 1.0 22 267-291 3-24 (26)
9 3syy_A Exonuclease; digest dou 10.1 1E+02 0.0035 27.0 1.5 19 327-345 132-150 (216)
10 3sm4_A Exonuclease; homologous 8.8 1.2E+02 0.0042 26.9 1.5 18 327-344 155-172 (229)
No 1
>2e2f_A Diapausin; Ca-channel blocker, antifungal peptide, structural genomics, antifungal protein; NMR {Gastrophysa atrocyanea}
Probab=45.57 E-value=6 Score=28.59 Aligned_cols=13 Identities=46% Similarity=1.301 Sum_probs=11.0
Q ss_pred hhccCCcch-hhhh
Q 016268 213 ACSTVDPLK-ECCR 225 (392)
Q Consensus 213 AC~~VDPlk-ECC~ 225 (392)
-|+.|||-| ||||
T Consensus 10 vcsri~pekdeccr 23 (41)
T 2e2f_A 10 VCPRIVPERHECCR 23 (41)
T ss_dssp STTSCSTTTHHHHH
T ss_pred cccCcCcchhHHHH
Confidence 589999987 7887
No 2
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=19.23 E-value=92 Score=26.92 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHhhhcCcCCccccccCC
Q 016268 275 SKLSAEAANSAFRILSACKVNKVCPLDFK 303 (392)
Q Consensus 275 ~KL~~~~An~~~R~LS~CkVNkvCPL~F~ 303 (392)
.+|+.+++++.+|.|..|+.--.||-.=|
T Consensus 151 ~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRP 179 (197)
T 3kdg_A 151 RHLRNDEIKALLDDLRSTSDPFTCPHGRP 179 (197)
T ss_dssp CCCCHHHHHHHHHHHHHSSCTTBCTTSCB
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcCCCCCc
Confidence 57999999999999999999999996544
No 3
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=17.81 E-value=99 Score=27.60 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHhhhcCcCCccccccCC
Q 016268 275 SKLSAEAANSAFRILSACKVNKVCPLDFK 303 (392)
Q Consensus 275 ~KL~~~~An~~~R~LS~CkVNkvCPL~F~ 303 (392)
.+|+.+++++.+|.|..|+.--.||-.=|
T Consensus 174 ~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRP 202 (220)
T 3ncv_A 174 RRLTLPEMNALLRDMENTPRSNQCNHGRP 202 (220)
T ss_dssp CCCCHHHHHHHHHHHHTSTTTTBCTTSCB
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcCCCCCc
Confidence 57999999999999999999999996543
No 4
>4a54_B DCP2, mRNA decapping complex subunit 2; RNA binding protein-hydrolase complex; NMR {Schizosaccharomyces pombe}
Probab=16.68 E-value=73 Score=23.70 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 016268 65 PAVIPPYPYA 74 (392)
Q Consensus 65 Ps~~P~~~~P 74 (392)
|+.+|||++-
T Consensus 39 pstfpqppve 48 (52)
T 4a54_B 39 PSTFPQPPVE 48 (52)
T ss_dssp CCCCCCCSSC
T ss_pred CCCCCCCCcc
Confidence 7888888653
No 5
>2bpt_B Nucleoporin NUP1; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae}
Probab=15.05 E-value=1e+02 Score=21.88 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=15.9
Q ss_pred CCCCCCCCCcccccccccccchhhhhhhcccccccchhh
Q 016268 84 TFPTTYEPNLTGRCPVNFSAMSSIMQKTASDCSQPLAPL 122 (392)
Q Consensus 84 ~f~n~~~P~LsG~C~lNFSa~~~~m~~TA~DC~~~fApl 122 (392)
.|+.+++|+ .|||-+..=|+.||.+-.-|---+
T Consensus 3 sftpstvpn------infsglnggitntatnalrpsdif 35 (39)
T 2bpt_B 3 SFTPSTVPN------INFSGLNGGITNTATNALRPSDIF 35 (39)
T ss_dssp SCCCCSSCC------CCCC---------CCC-CCGGGTT
T ss_pred cccccccCc------ccccccccccccccccccCchhcc
Confidence 367778886 599999999999998766654333
No 6
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=12.43 E-value=1.1e+02 Score=23.61 Aligned_cols=23 Identities=9% Similarity=0.443 Sum_probs=16.3
Q ss_pred chhhHHHHhhcCCCHHHHHHHHHhhhc
Q 016268 265 CKGVAYSYLSSKLSAEAANSAFRILSA 291 (392)
Q Consensus 265 CK~VVl~wLa~KL~~~~An~~~R~LS~ 291 (392)
=|||+++|+-.+ +.+++++.++.
T Consensus 10 LrNVl~~ym~g~----~~~~m~kaI~a 32 (60)
T 1upt_B 10 LRKVLFEYMMGR----ETKTMAKVITT 32 (60)
T ss_dssp HHHHHHHHHTTS----SHHHHHHHHHH
T ss_pred HHHHHHHHHHcc----cHHHHHHHHHH
Confidence 489999999876 45555555543
No 7
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=11.59 E-value=55 Score=28.31 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=20.8
Q ss_pred cCCcchhhHHHHhhcCCC--HHHHHHHHHh
Q 016268 261 ALNDCKGVAYSYLSSKLS--AEAANSAFRI 288 (392)
Q Consensus 261 ~v~DCK~VVl~wLa~KL~--~~~An~~~R~ 288 (392)
..++-|-|=+||||+.|+ ...||.+|.-
T Consensus 14 V~de~k~VTYr~LSr~l~VhvN~AK~mL~e 43 (144)
T 3e0j_B 14 VTDQNKIVTYKWLSYTLGVHVNQAKQMLYD 43 (144)
T ss_dssp HTTTCCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHhCCceEEHHHHHHHhCCCHHHHHHHHHH
Confidence 345566788999999765 6788888754
No 8
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=10.43 E-value=93 Score=20.57 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=16.2
Q ss_pred hhHHHHhhcCCCHHHHHHHHHhhhc
Q 016268 267 GVAYSYLSSKLSAEAANSAFRILSA 291 (392)
Q Consensus 267 ~VVl~wLa~KL~~~~An~~~R~LS~ 291 (392)
|-.+||| |+-+..|.++|-|-+
T Consensus 3 ~~LLRyL---LDkDdgnaalryllg 24 (26)
T 2ao6_B 3 NALLRYL---LDKDDGNAALRYLLG 24 (26)
T ss_pred cHHHHHH---HccccchHHHHHHhc
Confidence 5678888 455778888987744
No 9
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A
Probab=10.13 E-value=1e+02 Score=27.01 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.6
Q ss_pred HHHHHHhhhHhhhhhhhHH
Q 016268 327 NAYIAGVQKQMLITNKQAI 345 (392)
Q Consensus 327 ~sYvs~lQkQ~lITNlQAl 345 (392)
..|..-+|-||+||+++..
T Consensus 132 ~~Y~~QvQ~qm~Vtg~~~~ 150 (216)
T 3syy_A 132 PEYIKQMQTQMACTGRQWC 150 (216)
T ss_dssp HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHhcCCCEE
Confidence 5799999999999998743
No 10
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=8.78 E-value=1.2e+02 Score=26.92 Aligned_cols=18 Identities=50% Similarity=0.648 Sum_probs=16.6
Q ss_pred HHHHHHhhhHhhhhhhhH
Q 016268 327 NAYIAGVQKQMLITNKQA 344 (392)
Q Consensus 327 ~sYvs~lQkQ~lITNlQA 344 (392)
+.|..-+|-||.||+++.
T Consensus 155 ~~Y~~QvQ~qm~vtg~~~ 172 (229)
T 3sm4_A 155 SAYMAQVQYSMWVTRKNA 172 (229)
T ss_dssp HHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHhcCCCE
Confidence 789999999999999875
Done!