BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016269
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2Q1V6|ATG4_MEDTR Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1
Length = 487
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/390 (66%), Positives = 305/390 (78%)
Query: 1 MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETY 60
+K ++ A+KC SKS+ + + + S+ GSS+SK K SL S+ F S FSV ETY
Sbjct: 3 LKDLCDRIVAAKCSSKSSTEIVDNTQVPASSKAGSSDSKFPKASLWSTFFTSGFSVDETY 62
Query: 61 SESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCH 120
SESS+SEKK VH++++GW AAV+++V+ GSMRR ERVLG RT +SSS DIWLLGVCH
Sbjct: 63 SESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCH 122
Query: 121 KIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQML 180
KI+Q E+ GD N A F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQML
Sbjct: 123 KISQHESTGDVDIRNVFAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQML 182
Query: 181 VAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSW 240
VAQALLFH+LGR WRK + KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSW
Sbjct: 183 VAQALLFHKLGRSWRKTVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSW 242
Query: 241 VGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSV 300
VGPYAMCR+WE LAR QR + G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C
Sbjct: 243 VGPYAMCRTWEVLARNQREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLE 302
Query: 301 FSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQE 360
FS+G WTP+LLLVPLVLGL+KVN RYIP L+ TF FPQSLGI+GGKPGASTYI+GVQ
Sbjct: 303 FSRGLVPWTPLLLLVPLVLGLDKVNLRYIPLLQSTFKFPQSLGILGGKPGASTYIIGVQN 362
Query: 361 ESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
+ A YLDPH+V+PV+NI D E +TS+YH
Sbjct: 363 DKAFYLDPHEVKPVVNITGDTQEPNTSSYH 392
>sp|Q8S929|ATG4A_ARATH Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1
Length = 467
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/391 (58%), Positives = 296/391 (75%), Gaps = 5/391 (1%)
Query: 1 MKGFREKAGASKCFSKSTPDTPNRSLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETY 60
MK ++ +C S S DT ++S + S+ G S++KS K +L S++F S+ SV + Y
Sbjct: 1 MKALCDRFVPQQCSSSSKSDTHDKS--PLVSDSGPSDNKS-KFTLWSNVFTSSSSVSQPY 57
Query: 61 SESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVC 119
ESS S K V NGWTA VKR+ + +G++RR ERVLGP+RTG+ S+TSD+WLLGVC
Sbjct: 58 RESSTSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVC 117
Query: 120 HKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQM 179
+KI+ DE G+ LA DFSS+IL++YRKGF+P D+ TSDV WGCM+RSSQM
Sbjct: 118 YKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQM 177
Query: 180 LVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGS 239
L AQALLFHRLGR W K + P ++EY+E L FGDSE S FSIHNL+ AG +YGLAAGS
Sbjct: 178 LFAQALLFHRLGRAWTKKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGS 236
Query: 240 WVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCS 299
WVGPYA+CR+WE+LA +R +T Q+LPMA+++VSG EDGERGGAP++CI+DA++ C
Sbjct: 237 WVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKSCL 296
Query: 300 VFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQ 359
FSKGQ++WTPI+LLVPLVLGL+ VNPRYIP+L TFTFPQS+GI+GGKPGASTYIVGVQ
Sbjct: 297 EFSKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIVGVQ 356
Query: 360 EESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
E+ YLDPH+VQ V+ + K+ + DTS+YH
Sbjct: 357 EDKGFYLDPHEVQQVVTVNKETPDVDTSSYH 387
>sp|Q7XPW8|ATG4B_ORYSJ Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B
PE=2 SV=1
Length = 478
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/354 (60%), Positives = 276/354 (77%), Gaps = 9/354 (2%)
Query: 39 KSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERV 98
K SK S+LS +FNS F++FE + +SSA++ + S W+ ++R+V +GSM R
Sbjct: 38 KQSKTSILSCVFNSPFNIFEAHQDSSANKSPKSSSGSYDWSRVLRRIVCSGSMWRF---- 93
Query: 99 LGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDP 158
LG S+ ++SD+W LG C+K++ +E+ D+ +G A F +DFSSRI I+YR+GFD
Sbjct: 94 LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDA 150
Query: 159 IGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSET 218
I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WR+PL+KP++ EY+ ILH+FGDSE
Sbjct: 151 ISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEA 210
Query: 219 SPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVS 276
FSIHNLLQAG +YGLAAGSWVGPYAMCR+W+ L R R + + G +S PMA+YVVS
Sbjct: 211 CAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVS 270
Query: 277 GDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 336
GDEDGERGGAPVVCID A++ C F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TF
Sbjct: 271 GDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETF 330
Query: 337 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
TFPQSLGI+GGKPG STYI GVQ++ A+YLDPH+VQ ++I D++EADTS+YH
Sbjct: 331 TFPQSLGILGGKPGTSTYIAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYH 384
>sp|Q2XPP4|ATG4B_ORYSI Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1
SV=2
Length = 478
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/354 (60%), Positives = 274/354 (77%), Gaps = 9/354 (2%)
Query: 39 KSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERV 98
K SK S+LS +FNS F++FE + +SSA++ + S W ++R+V +GSM R
Sbjct: 38 KQSKTSILSCVFNSPFNIFEAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF---- 93
Query: 99 LGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDP 158
LG S+ ++SD+W LG C+K++ +E+ D+ +G A F +DFSSRI I+YR+GFD
Sbjct: 94 LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDA 150
Query: 159 IGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSET 218
I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WR+P +KP++ EY+ ILH+FGDSE
Sbjct: 151 ISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPSEKPYNPEYIGILHMFGDSEA 210
Query: 219 SPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVS 276
FSIHNLLQAG +YGLAAGSWVGPYAMCR+W+ L R R + + G +S PMA+YVVS
Sbjct: 211 CAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVS 270
Query: 277 GDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 336
GDEDGERGGAPVVCID A++ C F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TF
Sbjct: 271 GDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVPLVLGLDKINPRYIPLLKETF 330
Query: 337 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
TFPQSLGI+GGKPG STYI GVQ++ A+YLDPH+VQ ++I D++EADTS+YH
Sbjct: 331 TFPQSLGILGGKPGTSTYIAGVQDDRALYLDPHEVQMAVDIAADNIEADTSSYH 384
>sp|A2XHJ5|ATG4A_ORYSI Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3
SV=1
Length = 473
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/354 (61%), Positives = 268/354 (75%), Gaps = 9/354 (2%)
Query: 39 KSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERV 98
K SK S+LS +F+S FS+FE + +SSA H+ S W+ ++R+ GSM R
Sbjct: 34 KQSKNSILSCVFSSPFSIFEAHQDSSAHRPLKPHSGSYAWSRFLRRIACTGSMWRF---- 89
Query: 99 LGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDP 158
LG S+ + ++SD+W LG C+K++ +E + +G A F +DFSSRI I+YRKGFD
Sbjct: 90 LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDA 146
Query: 159 IGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSET 218
I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WRKP QKP+ EY+ ILH+FGDSE
Sbjct: 147 ISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEA 206
Query: 219 SPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVS 276
FSIHNLLQAGK+YGLAAGSWVGPYAMCR+W+ L R R E G + PMA+YVVS
Sbjct: 207 CAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVRTNREHHEAVDGNGNFPMALYVVS 266
Query: 277 GDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 336
GDEDGERGGAPVVCID A++ C F+KGQ+ W+PILLLVPLVLGL+K+NPRYIP L+ TF
Sbjct: 267 GDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVPLVLGLDKLNPRYIPLLKETF 326
Query: 337 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
TFPQSLGI+GGKPG STY+ GVQ++ +YLDPH+VQ ++I D+LEADTS+YH
Sbjct: 327 TFPQSLGILGGKPGTSTYVAGVQDDRVLYLDPHEVQLAVDIAADNLEADTSSYH 380
>sp|Q9M1Y0|ATG4B_ARATH Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1
Length = 477
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/367 (59%), Positives = 279/367 (76%), Gaps = 2/367 (0%)
Query: 25 SLASVGSELGSSESKSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKR 84
S S+ S+ SS++KS+ +L S + S+ V + E+S S V + WT +K
Sbjct: 26 SPTSLVSDSASSDNKSNL-TLCSDVVASSSPVSQLCREASTSGHNPVCTTHSSWTVILKT 84
Query: 85 L-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQD 143
+ +G++RR +RVLGPSRTGISSSTS+IWLLGVC+KI++ E+ +A LA F QD
Sbjct: 85 ASMASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQD 144
Query: 144 FSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFD 203
FSS IL++YR+GF+PIGD+ TSDV WGCMLRS QML AQALLF RLGR WRK +P D
Sbjct: 145 FSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPAD 204
Query: 204 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL 263
+Y+EIL LFGD+E S FSIHNL+ AG++YGLAAGSWVGPYA+CRSWE+LAR + ET
Sbjct: 205 EKYLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDD 264
Query: 264 GCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEK 323
+S MA+++VSG EDGERGGAP++CI+D ++ C FS+G+ +W PILLLVPLVLGL++
Sbjct: 265 KHKSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVPLVLGLDR 324
Query: 324 VNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLE 383
VNPRYIP+L TFTFPQSLGI+GGKPGASTYIVGVQE+ YLDPHDVQ V+ + K++ +
Sbjct: 325 VNPRYIPSLIATFTFPQSLGILGGKPGASTYIVGVQEDKGFYLDPHDVQQVVTVKKENQD 384
Query: 384 ADTSTYH 390
DTS+YH
Sbjct: 385 VDTSSYH 391
>sp|Q75KP8|ATG4A_ORYSJ Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A
PE=3 SV=1
Length = 474
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/354 (60%), Positives = 265/354 (74%), Gaps = 9/354 (2%)
Query: 39 KSSKGSLLSSLFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERV 98
K K S+LS +F+S FS+FE + +SSA+ H+ S W+ ++R+ GSM R
Sbjct: 35 KQLKNSILSCVFSSPFSIFEAHQDSSANRSLKPHSGSYAWSRFLRRIACTGSMWRF---- 90
Query: 99 LGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDP 158
LG S+ + ++SD+W LG C+K++ +E + +G A F +DFSSRI I+YRKGFD
Sbjct: 91 LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDA 147
Query: 159 IGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSET 218
I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WRKP QKP+ EY+ ILH+FGDSE
Sbjct: 148 ISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEA 207
Query: 219 SPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVS 276
FSIHNLLQAGK+YGLAAGSWVGPYAMCR+W+ L R E G + PMA+YVVS
Sbjct: 208 CAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVCTNREHHEAVDGNGNFPMALYVVS 267
Query: 277 GDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTF 336
GDEDGERGGAPVVCID A++ C F+K Q+ W+PILLLVPLVLGL+K+NPRYIP L+ T
Sbjct: 268 GDEDGERGGAPVVCIDVAAQLCCDFNKNQSTWSPILLLVPLVLGLDKLNPRYIPLLKETL 327
Query: 337 TFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
TFPQSLGI+GGKPG STYI GVQ++ A+YLDPH+VQ ++I D+LEA TS+YH
Sbjct: 328 TFPQSLGILGGKPGTSTYIAGVQDDRALYLDPHEVQLAVDIAADNLEAGTSSYH 381
>sp|Q8C9S8|ATG4A_MOUSE Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2
Length = 396
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 144/299 (48%), Gaps = 50/299 (16%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 172
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHPLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 232
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWNWERQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 233 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 292
G + G W GP + + + LA + +A+YV + V I+
Sbjct: 138 EGKSIGEWFGPNTVAQVIKKLALFDEWNS--------LAVYVSMDN---------TVVIE 180
Query: 293 DASRHCSVFSKGQAD---------------------WTPILLLVPLVLGLEKVNPRYIPT 331
D + C V G AD W P+LL+VPL LG+ ++NP Y+
Sbjct: 181 DIKKMCCVLPVGAADPAGDFLTASNQSRDTSVPCSAWKPLLLIVPLRLGINQINPVYVEA 240
Query: 332 LRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
+ F PQSLG +GGKP + Y +G + I+LDPH Q ++I + L D T+H
Sbjct: 241 FKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDIEESGL-VDDQTFH 298
>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2
Length = 393
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 150/303 (49%), Gaps = 41/303 (13%)
Query: 109 STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 166
++ +W+LG + I +DE L D A SR+ +YR+ F IG + TS
Sbjct: 22 TSEPVWILGRKYSIFTEKDEILSDVA-------------SRLWFTYRRNFPAIGGTGPTS 68
Query: 167 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 226
D GWGCMLR QM+ AQAL+ LGR WR +K Y +L+ F D + S +SIH +
Sbjct: 69 DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLDRKDSYYSIHQI 128
Query: 227 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDG 281
Q G G + G W GP + + + LA + +A+++ V +E
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIR 180
Query: 282 ERGGAPVVCI------DDASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYI 329
A + C D+ RHC+ F G + W P++LL+PL LGL +N Y+
Sbjct: 181 RLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINEAYV 240
Query: 330 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTY 389
TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP + + D S +
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDES-F 299
Query: 390 HSE 392
H +
Sbjct: 300 HCQ 302
>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2
Length = 393
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 143/287 (49%), Gaps = 40/287 (13%)
Query: 109 STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 166
++ +W+LG + I +DE L D A SR+ +YRK F IG + TS
Sbjct: 22 TSEPVWILGRKYSIFTEKDEILSDVA-------------SRLWFTYRKNFPAIGGTGPTS 68
Query: 167 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 226
D GWGCMLR QM+ AQAL+ LGR WR +K Y +L+ F D + S +SIH +
Sbjct: 69 DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQI 128
Query: 227 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYV-----VSGDEDG 281
Q G G + G W GP + + + LA + +A+++ V +E
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSS--------LAVHIAMDNTVVMEEIR 180
Query: 282 ERGGAPVVCID------DASRHCSVFSKGQ------ADWTPILLLVPLVLGLEKVNPRYI 329
V C D+ RHC+ F G + W P++LL+PL LGL +N Y+
Sbjct: 181 RLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYV 240
Query: 330 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 376
TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP +
Sbjct: 241 ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVE 287
>sp|Q5R699|ATG4A_PONAB Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1
Length = 398
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 145/302 (48%), Gaps = 53/302 (17%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 172
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 232
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 233 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 292
G + G W GP + + + LA + +A+YV + V I+
Sbjct: 138 EGKSIGEWFGPNTVAQVLKKLALFDEWNS--------LAVYVSMDN---------TVVIE 180
Query: 293 DASRHCSV--------------------FSKGQ----ADWTPILLLVPLVLGLEKVNPRY 328
D + C V SKG + W P+LL+VPL LG+ ++NP Y
Sbjct: 181 DIKKMCRVLPLGADTAGDRPPDSLTASNLSKGTSAYCSAWKPLLLIVPLRLGINQINPVY 240
Query: 329 IPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTST 388
+ + F PQSLG +GGKP + Y +G + I+LDPH Q ++ G++ D T
Sbjct: 241 VDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTGENGTVND-QT 299
Query: 389 YH 390
+H
Sbjct: 300 FH 301
>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2
Length = 394
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 135/264 (51%), Gaps = 18/264 (6%)
Query: 143 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPF 202
D +SR+ +YRK F PIG + TSD GWGCMLR QM++ +AL+ LGR W+ +
Sbjct: 45 DVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRDWKWSPGQRQ 104
Query: 203 DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEAL 253
EYV IL+ F D + S +SIH + Q G G + G W GP A+ SW L
Sbjct: 105 RPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDSWSRL 164
Query: 254 ARCQRAETGLGCQSLPMAIYVVSGDEDGERGGA-----PVVCIDDASRHCSVFSKGQADW 308
A + + + + D +RG P D C++ + A W
Sbjct: 165 AVHVAMDNTVVIEEIKRLCMPWL---DFDRGACAVSEEPREMNGDLEGACALAEEETALW 221
Query: 309 TPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDP 368
P++LL+PL LGL +N YI L+ F PQSLG++GGKP ++ Y +G + IYLDP
Sbjct: 222 KPLVLLIPLRLGLSDINEAYIEPLKQCFMMPQSLGVIGGKPNSAHYFIGFVGDELIYLDP 281
Query: 369 HDVQPVINIGKDDLEADTSTYHSE 392
H QP ++ +D D S YH +
Sbjct: 282 HTTQPAVDPSEDGHFPDDS-YHCQ 304
>sp|Q8WYN0|ATG4A_HUMAN Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1
Length = 398
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 33/292 (11%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 172
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 232
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 233 YGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDG 281
G + G W GP A+ W +LA + + + + V +S D G
Sbjct: 138 EGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAG 197
Query: 282 ERGGAPVVCIDDA---SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 338
+R + + + S +CS W P+LL+VPL LG+ ++NP Y+ + F
Sbjct: 198 DRPPDSLTASNQSKGTSAYCSA-------WKPLLLIVPLRLGINQINPVYVDAFKECFKM 250
Query: 339 PQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
PQSLG +GGKP + Y +G + I+LDPH Q ++ ++ D T+H
Sbjct: 251 PQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGTVND-QTFH 301
>sp|Q6PZ05|ATG4A_BOVIN Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1
Length = 398
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 142/289 (49%), Gaps = 27/289 (9%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 172
+W+LG H + +++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 29 VWILGKQHLLKTEKS-----------KLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGC 77
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 232
MLR QM++AQAL+ LGR W QK +EY IL F D + +SIH + Q G
Sbjct: 78 MLRCGQMMLAQALICRHLGRDWNWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVG 137
Query: 233 YGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDG 281
G + G W GP A+ W +LA + + + + +S D
Sbjct: 138 EGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRTLSLSADTPA 197
Query: 282 ERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQS 341
ER + AS S W P+LL+VPL LG+ ++NP Y+ + F PQS
Sbjct: 198 ERPLESLT----ASNQSKGPSACCTAWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQS 253
Query: 342 LGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYH 390
LG +GGKP + Y +G + I+LDPH Q ++ +++ AD T+H
Sbjct: 254 LGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDT-EENGTADDQTFH 301
>sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1
Length = 393
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 139/289 (48%), Gaps = 46/289 (15%)
Query: 109 STSDIWLLGVCHKI--AQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITS 166
++ +W+LG + + +DE L D A SR+ +YRK F IG + TS
Sbjct: 22 TSEPVWILGRKYSVLTEKDEILADVA-------------SRLWFTYRKNFPAIGGTGPTS 68
Query: 167 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 226
D GWGCMLR QM+ AQAL+ LGR WR +K Y +L F D + S +SIH +
Sbjct: 69 DTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYCSVLQAFLDRKDSCYSIHQI 128
Query: 227 LQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYVVSG 277
Q G G + G W GP A+ +W ALA + M VV
Sbjct: 129 AQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSALA-----------VHVAMDNTVVMA 177
Query: 278 D-EDGERGGAPVVCID----DASRHCSVF------SKGQADWTPILLLVPLVLGLEKVNP 326
D R P + D+ RHC+ F A W P++LL+PL LGL VN
Sbjct: 178 DIRRLCRSSLPCAGAEAFPADSERHCNGFPAGAEGGGRAAPWRPLVLLIPLRLGLADVNA 237
Query: 327 RYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVI 375
Y TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP +
Sbjct: 238 AYAGTLKHCFRMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV 286
>sp|Q0U199|ATG4_PHANO Probable cysteine protease ATG4 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=ATG4 PE=3 SV=1
Length = 467
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 139/275 (50%), Gaps = 42/275 (15%)
Query: 135 NGLAEFNQDFSSRILISYRKGFDPIGDSK---------------------ITSDVGWGCM 173
N + F DF SR+ ++YR GF PI S+ TSD G+GCM
Sbjct: 91 NWPSAFLDDFESRVWMTYRSGFSPIQKSQDPKATSAMSFRVRMQNLASPGFTSDAGFGCM 150
Query: 174 LRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY 233
+RS Q ++A AL RLGR WR + D+++ EIL LF D +PFSIH ++ G A
Sbjct: 151 IRSGQCILANALQILRLGRDWRW-QENHADKDHAEILSLFADDPQAPFSIHRFVEHGAAV 209
Query: 234 -GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 292
G G W GP A R + LA R E GL +YV SGD GA V +
Sbjct: 210 CGKYPGEWFGPSAAARCIQDLANKHR-EAGL-------KVYV-SGD------GADVY--E 252
Query: 293 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 352
D + +V G W P L+LV LG++K+ P Y L+ + PQS+GI GG+P AS
Sbjct: 253 DKLKQVAVDEDGL--WQPTLILVGTRLGIDKITPVYWEALKASLQIPQSIGIAGGRPSAS 310
Query: 353 TYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTS 387
Y VGVQ + YLDPH +P++ L A TS
Sbjct: 311 HYFVGVQGNNFYYLDPHSTRPLLPFHPPSLAAATS 345
>sp|Q640G7|ATG4B_XENLA Cysteine protease ATG4B OS=Xenopus laevis GN=atg4b PE=2 SV=1
Length = 384
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 126/249 (50%), Gaps = 36/249 (14%)
Query: 142 QDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKP 201
D +SR+ +YR+ F IG + TSD GWGCMLR QM+ AQAL+ +GR WR QKP
Sbjct: 44 NDITSRLWFTYRRNFQAIGGTGPTSDTGWGCMLRCGQMIFAQALICRHVGRDWRWDKQKP 103
Query: 202 FDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET 261
EY+ IL F D + S +SIH + Q G G G W GP + + LA + +
Sbjct: 104 -KGEYLNILTAFLDKKDSYYSIHQIAQMGVGEGKYIGQWYGPNTVAQVLRKLAVFDQWSS 162
Query: 262 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD-------------- 307
+A+++ + V +D+ R C S +D
Sbjct: 163 --------IAVHIAMDN---------TVVVDEIRRLCRAGSGESSDAGALSNGYTGDSDP 205
Query: 308 ----WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESA 363
W P++LL+PL LGL ++N YI TL+ F PQSLG++GG+P ++ Y +G +
Sbjct: 206 SCAQWKPLVLLIPLRLGLSEINEAYIETLKHCFMVPQSLGVIGGRPNSAHYFIGYVGDEL 265
Query: 364 IYLDPHDVQ 372
IYLDPH Q
Sbjct: 266 IYLDPHTTQ 274
>sp|Q6PZ02|ATG4B_CHICK Cysteine protease ATG4B OS=Gallus gallus GN=ATG4B PE=2 SV=1
Length = 393
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 135/292 (46%), Gaps = 59/292 (20%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 172
+W+LG + + ++ E D +SR+ +YRK F IG + TSD GWGC
Sbjct: 25 VWILGRKYSVFTEKE-----------EILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGC 73
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 232
MLR QM+ AQAL+ LGR WR K Y +L+ F D + S +SIH + Q G
Sbjct: 74 MLRCGQMIFAQALVCRHLGRDWRWIKGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVG 133
Query: 233 YGLAAGSWVGPYAMCR---------SWEALA----------------RCQRAETGLGCQS 267
G + G W GP + + +W +LA CQ + G +
Sbjct: 134 EGKSIGQWYGPNTVAQVLKKLATFDTWSSLAVHIAMDNTVVMEEIRRLCQSNFSCAGAAA 193
Query: 268 LPM----AIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEK 323
P +Y +E G R + W P++LL+PL LGL +
Sbjct: 194 CPAVEADVLYNGYPEEAGVRDKLSL-------------------WKPLVLLIPLRLGLTE 234
Query: 324 VNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVI 375
+N YI TL+ F PQSLG++GGKP ++ Y +G E IYLDPH QP +
Sbjct: 235 INEAYIETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAV 286
>sp|A6SDQ3|ATG4_BOTFB Probable cysteine protease atg4 OS=Botryotinia fuckeliana (strain
B05.10) GN=atg4 PE=3 SV=1
Length = 439
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 136/272 (50%), Gaps = 47/272 (17%)
Query: 140 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 176
F DF ++I ++YR F I S+ TSD GWGCM+RS
Sbjct: 103 FLDDFEAKIWLTYRSNFPAIAKSQDPKALSAMSLSVRLRSQLVDQGGFTSDTGWGCMIRS 162
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 235
Q L+A ALL R+GR WR+ + +R+ IL LF D +P+SIH ++ G A G
Sbjct: 163 GQSLLANALLTLRMGREWRRGVSSNEERK---ILSLFADDPRAPYSIHKFVEHGASACGK 219
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 295
G W GP A R +AL+ Q + +Y+ +GD G+ V
Sbjct: 220 HPGEWFGPSATARCIQALSNSQAKSE--------LRVYI-TGD------GSDVY----ED 260
Query: 296 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 355
+ S+ +D+TP L+LV LGL+K+ P Y L+ + PQS+GI GG+P +S Y
Sbjct: 261 KFMSIAKPNHSDFTPTLILVGTRLGLDKITPVYWEALKYSLQMPQSVGIAGGRPSSSHYF 320
Query: 356 VGVQEESAIYLDPHDVQPVINIGKDDLEADTS 387
+GVQE YLDPH +P + KD++E T+
Sbjct: 321 IGVQESDFFYLDPHQTRPALPY-KDNVEDYTT 351
>sp|Q8BGV9|ATG4D_MOUSE Cysteine protease ATG4D OS=Mus musculus GN=Atg4d PE=1 SV=1
Length = 474
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 141/312 (45%), Gaps = 61/312 (19%)
Query: 102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGD 161
SRT S S + L G C+ G + F +DF SR+ ++YR+ F P+
Sbjct: 84 SRTSFSK-ISTVHLCGRCYHFE---------GEGDIQRFQRDFVSRLWLTYRRDFPPLAG 133
Query: 162 SKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR-------------------------- 195
+TSD GWGCMLRS QM++AQ LL H L R WR
Sbjct: 134 GSLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRWVEGTGLASSEMPGPASPSRCRGPGR 193
Query: 196 --------KPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMC 247
L+ DR + I+ F D +PF +H L++ G++ G AG W GP
Sbjct: 194 RGPPRWTQGALEMEQDRWHRRIVSWFADHPRAPFGLHRLVELGRSSGKKAGDWYGP---- 249
Query: 248 RSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD 307
+A R C + + VS D V D +R S + A+
Sbjct: 250 ---SVVAHILRKAVE-SCSEVSRLVVYVSQDC--------TVYKADVARLLS-WPDPTAE 296
Query: 308 WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLD 367
W +++LVP+ LG E +NP Y+P ++ LGI+GGKP S Y +G Q++ +YLD
Sbjct: 297 WKSVVILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLD 356
Query: 368 PHDVQPVINIGK 379
PH QP +++ +
Sbjct: 357 PHYCQPTVDVSQ 368
>sp|Q6GPU1|ATG4A_XENLA Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a PE=2 SV=1
Length = 397
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 134/268 (50%), Gaps = 22/268 (8%)
Query: 138 AEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP 197
+ D SR+ +YRK F PIG + +SD GWGCMLR QM++AQAL+ LGR WR
Sbjct: 45 CDLQSDIVSRLWFTYRKKFSPIGGTGPSSDTGWGCMLRCGQMMLAQALVCQHLGRDWRWE 104
Query: 198 LQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQ 257
K EY +IL F D + +SIH + Q G G + G W GP + + + LA
Sbjct: 105 KHKNHPEEYQQILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFD 164
Query: 258 RAETGLGCQSLPMAIY------VVSGDEDGERGGAPVVC-IDDASRHCSVFSKGQ----- 305
+ +A+Y VV D P C + A+ H S +S+ +
Sbjct: 165 EWNS--------LAVYVSMDNTVVVEDIKTMCKYQPQSCSMAQAASHQSTWSRCRDTSGH 216
Query: 306 -ADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAI 364
+ W P+LL+VPL LG+ +NP Y+ + F PQSLG +GGKP + Y +G + I
Sbjct: 217 CSGWRPLLLVVPLRLGINHINPVYVDAFKACFKMPQSLGALGGKPNHAYYFIGFSGDEII 276
Query: 365 YLDPHDVQPVINIGKDDLEADTSTYHSE 392
YLDPH Q ++ + D TYH +
Sbjct: 277 YLDPHTTQTFVDTEEAGTVQD-QTYHCQ 303
>sp|Q684M2|ATG4D_PIG Cysteine protease ATG4D OS=Sus scrofa GN=ATG4D PE=3 SV=1
Length = 469
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 146/315 (46%), Gaps = 57/315 (18%)
Query: 102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGD 161
SRT S +S + +C + + E GD + F +DF SR+ ++YR+ F P+
Sbjct: 83 SRTSFSKISS----VHLCGRRYRFEGEGD------IQRFQRDFVSRLWLTYRRDFPPLAG 132
Query: 162 SKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWR--------KPLQKPF----------- 202
+TSD GWGCMLRS QM++AQ LL H L R W P P
Sbjct: 133 GCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWSQGVGLGPPESSPNRYRGPAHWMPP 192
Query: 203 -----------DREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWE 251
+R + +I+ F D +PF +H L++ G++ G AG W GP
Sbjct: 193 HWVQAAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP-------S 245
Query: 252 ALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPI 311
+A R + + +YV + A +V D + A+W +
Sbjct: 246 LVAHILRKAVESCSEVTRLVVYVSQDCTVYKADVARLVARPDPT----------AEWKAV 295
Query: 312 LLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDV 371
++LVP+ LG E +NP Y+P ++ LGI+GGKP S Y +G Q++ +YLDPH
Sbjct: 296 VILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYC 355
Query: 372 QPVINIGKDDLEADT 386
QP +++ + D ++
Sbjct: 356 QPTVDVSQADFPLES 370
>sp|A7F045|ATG4_SCLS1 Probable cysteine protease atg4 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=atg4 PE=3 SV=2
Length = 439
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 131/268 (48%), Gaps = 47/268 (17%)
Query: 140 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 176
F DF ++I ++YR F I S+ TSD GWGCM+RS
Sbjct: 103 FLDDFEAKIWLTYRSNFPAIAKSQDPKALSAMSLSVRLRSQLVDQGGFTSDTGWGCMIRS 162
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 235
Q L+A ALL R+GR WR+ +R+ IL LF D +P+SIH ++ G A G
Sbjct: 163 GQSLLANALLTLRMGREWRRGSSSNEERK---ILSLFADDPRAPYSIHKFVEHGASACGK 219
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 295
G W GP A ARC +A T +S + +Y+ +GD G+ V
Sbjct: 220 HPGEWFGP-------SAAARCIQALTNSQVES-ELRVYI-TGD------GSDVY----ED 260
Query: 296 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 355
S+ +TP L+LV LGL+K+ P Y L+ + PQS+GI GG+P +S Y
Sbjct: 261 TFMSIAKPNSTKFTPTLILVGTRLGLDKITPVYWEALKSSLQMPQSVGIAGGRPSSSHYF 320
Query: 356 VGVQEESAIYLDPHDVQPVINIGKDDLE 383
+GVQE YLDPH +P + D++E
Sbjct: 321 IGVQESDFFYLDPHQTRPALPF-NDNVE 347
>sp|Q5ZIW7|ATG4A_CHICK Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1
Length = 380
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 53/304 (17%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGC 172
+W+LG H + +D++ + D S+R+ +YR+ F PIG + +SD GWGC
Sbjct: 12 VWILGRQHHLNEDKS-----------KLLLDVSARLWFTYRRKFSPIGGTGPSSDAGWGC 60
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKA 232
MLR QM++AQAL+ LGR W+ K EY ILH F D + +SIH + Q G
Sbjct: 61 MLRCGQMMLAQALICRHLGRDWQWEKHKKQPEEYHRILHCFLDRKDCCYSIHQMAQMGVG 120
Query: 233 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 292
G + G W GP + + + LA + +A+YV + V I+
Sbjct: 121 EGKSIGEWFGPNTVAQVLKKLALFDEWNS--------LAVYVSMDN---------TVVIE 163
Query: 293 DASRHC------------------SVFSKGQ------ADWTPILLLVPLVLGLEKVNPRY 328
D + C S + + W P+LL++PL LG+ +NP Y
Sbjct: 164 DIKKMCRSPPQSSSTAHSSAHLHRSALGRNRNAAGLCTGWKPLLLIIPLRLGINHINPVY 223
Query: 329 IPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTST 388
I + F PQSLG +GGKP + Y +G IYLDPH Q ++ +++ D +
Sbjct: 224 IDAFKECFKMPQSLGALGGKPNNAYYFIGFLGNELIYLDPHTTQSFVD-SEENGTVDDQS 282
Query: 389 YHSE 392
+H +
Sbjct: 283 FHCQ 286
>sp|Q86TL0|ATG4D_HUMAN Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=2 SV=1
Length = 474
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 145/319 (45%), Gaps = 61/319 (19%)
Query: 102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGD 161
SRT S +S + +C + + E GD + F +DF SR+ ++YR+ F P+
Sbjct: 84 SRTSFSKISS----IHLCGRRYRFEGEGD------IQRFQRDFVSRLWLTYRRDFPPLPG 133
Query: 162 SKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW--------------------------- 194
+TSD GWGCMLRS QM++AQ LL H L R W
Sbjct: 134 GCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPAR 193
Query: 195 -------RKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMC 247
+ + +R + +I+ F D +PF +H L++ G++ G AG W GP
Sbjct: 194 WMPPRWAQGAPELEQERRHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGP---- 249
Query: 248 RSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD 307
+A R + +YV + A +V D + A+
Sbjct: 250 ---SLVAHILRKAVESCSDVTRLVVYVSQDCTVYKADVARLVARPDPT----------AE 296
Query: 308 WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLD 367
W +++LVP+ LG E +NP Y+P ++ LGI+GGKP S Y +G Q++ +YLD
Sbjct: 297 WKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIMGGKPRHSLYFIGYQDDFLLYLD 356
Query: 368 PHDVQPVINIGKDDLEADT 386
PH QP +++ + D ++
Sbjct: 357 PHYCQPTVDVSQADFPLES 375
>sp|A2QY50|ATG4_ASPNC Probable cysteine protease atg4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=atg4 PE=3 SV=1
Length = 404
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 153/346 (44%), Gaps = 68/346 (19%)
Query: 92 RRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAE------------ 139
+RI + + P S IW LG+ + +D + N E
Sbjct: 11 KRIVQYLWDPEPRNDEDPNSSIWCLGIEYHPDKDANTRETPDKNNTRENVMGTTNYRKPS 70
Query: 140 -------FNQDFSSRILISYRKGFDPI----GDSK-------------------ITSDVG 169
F DF SRI ++YR F PI GD K TSD G
Sbjct: 71 EHAWPESFLLDFESRIWMTYRSNFPPIPRVEGDDKSASMTLGVRLRSQLVDTQGFTSDTG 130
Query: 170 WGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQA 229
WGCM+RS Q L+A AL LGR WR+ + F+ E ++L LF D+ T+PFS+H ++
Sbjct: 131 WGCMIRSGQSLLANALSMLVLGRDWRRGAR--FEEE-SQLLSLFADTPTAPFSVHRFVKH 187
Query: 230 G-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPV 288
G ++ G G W GP A + EAL+ C + + +YV + + +
Sbjct: 188 GAESCGKYPGEWFGPSATAKCIEALSS--------QCGNPTLKVYVSNDTSEVYQDK--- 236
Query: 289 VCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGK 348
D +R+ S + P L+L+ LG++ + P Y L+ FPQS+GI GG+
Sbjct: 237 --FMDIARNTS------GAFQPTLILLGTRLGIDNITPVYWDGLKAALQFPQSVGIAGGR 288
Query: 349 PGASTYIVGVQEESAIYLDPHDVQPVI---NIGKDDLEADTSTYHS 391
P AS Y VG Q YLDPH +P + G+ + + TYH+
Sbjct: 289 PSASHYFVGAQGSHLFYLDPHYTRPALPDRQEGELYSKEEVDTYHT 334
>sp|Q1E5M9|ATG4_COCIM Probable cysteine protease ATG4 OS=Coccidioides immitis (strain RS)
GN=ATG4 PE=3 SV=1
Length = 432
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 125/278 (44%), Gaps = 50/278 (17%)
Query: 140 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 176
F DF S+ +YR F I S+ T+D GWGCM+RS
Sbjct: 105 FLDDFESKFWFTYRSNFPAIPKSRDPDTPLALTLSVRLRSQFLDTHGFTADTGWGCMIRS 164
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 235
Q L+A AL LGR WR+ + +E E+L LF D+ +PFSIH + G A G
Sbjct: 165 GQSLLANALSILNLGRDWRRGSKI---KEECELLSLFADNPQAPFSIHRFVDYGASACGK 221
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 295
G W GP A R EAL+ C+ + +YV+S D + D
Sbjct: 222 HPGEWFGPSATARCIEALSN--------ECKHTDLNVYVMSDGSDVHEDQFRQIAGPDGI 273
Query: 296 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 355
R P L+L+ + LG+E V P Y LR +PQS+GI GG+P +S Y
Sbjct: 274 R-------------PTLILLGVRLGIESVTPVYWEALRAIIRYPQSVGIAGGRPSSSLYF 320
Query: 356 VGVQEESAIYLDPHDVQPVINIGKDDL--EADTSTYHS 391
+GVQ YLDPH +P ++ D + TYH+
Sbjct: 321 IGVQGPYFFYLDPHHTRPAVSWNPDSTLSPENLDTYHT 358
>sp|Q811C2|ATG4C_MOUSE Cysteine protease ATG4C OS=Mus musculus GN=Atg4c PE=2 SV=2
Length = 458
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 142/342 (41%), Gaps = 76/342 (22%)
Query: 108 SSTSDIWLLGVCHKIA-QDE----------ALGDAAGNNGLAEFNQDFSSRILISYRKGF 156
S S + LLG C+ +DE A+ D + EF +DF SRI ++YR+ F
Sbjct: 36 SRNSPVLLLGKCYHFKYEDESKMLPARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEF 95
Query: 157 DPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQK 200
I S +T+D GWGC LR+ QML+AQ L+ H LGR W P K
Sbjct: 96 PQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIENADSDSWTSNTVK 155
Query: 201 PF----------DRE--------------------------YVEILHLFGDSETSPFSIH 224
F DRE + +I+ FGDS + F +H
Sbjct: 156 KFTASFEASLSGDRELRTPAVSLKETSGKCPDDHAVRNEAYHRKIISWFGDSPVAVFGLH 215
Query: 225 NLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERG 284
L++ GK G AG W GP + R G + IYV
Sbjct: 216 RLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQG-----LTIYVAQD------- 263
Query: 285 GAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGI 344
V D + + G A +++LVP+ LG E+ N Y+ ++ + +GI
Sbjct: 264 -CTVYNSDVIDKQTDSVTAGDARDKAVIILVPVRLGGERTNTDYLEFVKGVLSLEYCVGI 322
Query: 345 VGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADT 386
+GGKP S Y G Q++S IY+DPH Q +++ D +T
Sbjct: 323 IGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLET 364
>sp|A1CJ08|ATG4_ASPCL Probable cysteine protease atg4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=atg4 PE=3 SV=1
Length = 400
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 129/280 (46%), Gaps = 49/280 (17%)
Query: 139 EFNQDFSSRILISYRKGFDPIG----------------------DSK-ITSDVGWGCMLR 175
EF D SRI I+YR F PI DS+ TSD GWGCM+R
Sbjct: 75 EFLDDVESRIWITYRSNFTPIPKPPNQEANPAMTLTVHLRSQLMDSQGFTSDTGWGCMIR 134
Query: 176 SSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-G 234
S Q L+A A+L LGR WR+ + + ++LH F D +PFSIH +Q G +
Sbjct: 135 SGQSLLANAMLILLLGRDWRRGTEA---GKEAQLLHQFADHPEAPFSIHRFVQHGAEFCN 191
Query: 235 LAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 294
G W GP A R +AL A+ G S + +Y+ D + D
Sbjct: 192 KYPGEWFGPSATARCIQALV----AQQG----SSELRVYITDDTAD--------IYEDKF 235
Query: 295 SRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTY 354
+R + D+ P L+LV LG++ V P Y L+ PQS+GI GG+P AS Y
Sbjct: 236 AR---IAQAEHGDFIPTLILVGTRLGIDHVTPAYWDALKEALQLPQSVGIAGGRPSASHY 292
Query: 355 IVGVQEESAIYLDPHDVQPV---INIGKDDLEADTSTYHS 391
+GV + YLDPH +P ++ + +TYH+
Sbjct: 293 FIGVHGQYLFYLDPHHTRPASLHQDVNDTLTHEEVNTYHT 332
>sp|A7KAI3|ATG4_PICAN Probable cysteine protease ATG4 OS=Pichia angusta GN=ATG4 PE=3 SV=1
Length = 509
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 137/295 (46%), Gaps = 56/295 (18%)
Query: 115 LLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSK----------- 163
L + HK D+A A + EF +D SRI ++YR GF I ++
Sbjct: 51 LRTLFHKFKPDQAADTEA--SWPREFLRDVHSRIWLTYRSGFPLIKRAEDGPSPLSFGSL 108
Query: 164 -------------ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEIL 210
T+D GWGCM+R+SQ L+A +LL RLGR WR + + + EI+
Sbjct: 109 IRGTVDLATVTKGFTTDAGWGCMIRTSQSLLANSLLQLRLGRGWRYDQTRECAK-HAEIV 167
Query: 211 HLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLP 269
F D T+PFSIHN ++ G G G W GP A RS + L +TGL
Sbjct: 168 SWFVDIPTAPFSIHNFVEQGANCAGKKPGEWFGPSAAARSIQVLCEANYDKTGLKV---- 223
Query: 270 MAIYVVSGD--EDGERGGAPVVCIDDASRHCSVFSKGQ--ADWTPILLLVPLVLGLEKVN 325
+ SGD ED +F Q A+ P+L+L + LG++ VN
Sbjct: 224 --YFTASGDIYED------------------ELFELAQQGAELRPVLILAGIRLGVKNVN 263
Query: 326 PRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKD 380
P Y L+ T +PQS+GI GG+P +S Y G Q + YLDPH Q + I +
Sbjct: 264 PLYWDFLKKTLGWPQSVGIAGGRPSSSHYFFGFQGDYLFYLDPHVPQKALLIASE 318
>sp|Q2HH40|ATG4_CHAGB Probable cysteine protease ATG4 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=ATG4 PE=3 SV=2
Length = 448
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 128/270 (47%), Gaps = 53/270 (19%)
Query: 140 FNQDFSSRILISYRKGFDPI----------------------GD-SKITSDVGWGCMLRS 176
F DF SRI ++YR GF+PI GD + +SD GWGCM+RS
Sbjct: 113 FLDDFGSRIWMTYRTGFEPIPRSTDPKAASALSFTMRLKTSFGDQTGFSSDTGWGCMIRS 172
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGK-AYGL 235
Q L+A ALL +LGR WR+ +R I+ LF D +P+S+ N ++ G A G
Sbjct: 173 GQSLLANALLISQLGRDWRRTTDPGAERN---IVALFADDARAPYSLQNFVKHGAIACGK 229
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 295
G W GP A R +ALA + + IY G P V D
Sbjct: 230 HPGEWFGPSATARCIQALADQHESS---------LRIYST--------GDLPDVYED--- 269
Query: 296 RHCSVFSKGQAD---WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 352
S + + D + P L+LV LG++K+NP Y L T QS+GI GG+P +S
Sbjct: 270 ---SFLATARPDGETFHPTLILVCTRLGIDKINPVYEEALISTLQMEQSIGIAGGRPSSS 326
Query: 353 TYIVGVQEESAIYLDPHDVQPVINIGKDDL 382
Y VGVQ + YLDPH +P + ++ L
Sbjct: 327 HYFVGVQRQWLFYLDPHHPRPALQYRENPL 356
>sp|Q96DT6|ATG4C_HUMAN Cysteine protease ATG4C OS=Homo sapiens GN=ATG4C PE=2 SV=1
Length = 458
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 142/342 (41%), Gaps = 76/342 (22%)
Query: 108 SSTSDIWLLGVCHKIA-QDE----------ALGDAAGNNGLAEFNQDFSSRILISYRKGF 156
S S + LLG C+ +DE + D + EF +DF SRI ++YR+ F
Sbjct: 36 SRNSPVLLLGKCYHFKYEDEDKTLPAESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEF 95
Query: 157 DPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKP----------------LQK 200
I S +T+D GWGC LR+ QML+AQ L+ H LGR W P K
Sbjct: 96 PQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVK 155
Query: 201 PF----------DREYV--------------------------EILHLFGDSETSPFSIH 224
F +RE+ +I+ FGDS + F +H
Sbjct: 156 KFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLH 215
Query: 225 NLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERG 284
L++ GK G AG W GP + R G + IYV
Sbjct: 216 QLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQG-----ITIYVAQD------- 263
Query: 285 GAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGI 344
V D + + + AD +++LVP+ LG E+ N Y+ ++ + +GI
Sbjct: 264 -CTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGERTNTDYLEFVKGILSLEYCVGI 322
Query: 345 VGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADT 386
+GGKP S Y G Q++S IY+DPH Q +++ D +T
Sbjct: 323 IGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLET 364
>sp|Q5XH30|ATG4C_XENLA Cysteine protease ATG4C OS=Xenopus laevis GN=atg4c PE=2 SV=1
Length = 450
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 140/334 (41%), Gaps = 91/334 (27%)
Query: 110 TSDIWLLGVCHKIAQDEA--LGDAAGNNG----------LAEFNQDFSSRILISYRKGFD 157
S ++LLG C+ +++ D N+G + EF +DF SRI ++YRK F
Sbjct: 38 NSPVFLLGKCYHFKYEDSGVTADDCSNSGSDSKEDLSGNVDEFRKDFISRIWLTYRKEFP 97
Query: 158 PIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW----------------------- 194
I S T+D GWGC LR+ QML+AQ LL H LGR W
Sbjct: 98 QIESSSWTTDCGWGCTLRTGQMLLAQGLLVHFLGRDWTWTEALDIFCSESDFWTANTARK 157
Query: 195 -------------------RKPLQKPFDREYVEILH-----LFGDSETSPFSIHNLLQAG 230
++PLQ + Y E LH F D + F +H L++ G
Sbjct: 158 LDPSLEKSSPENEEYVSLGKQPLQNSEKKRYSEDLHRKIISWFADYPLAYFGLHQLVKLG 217
Query: 231 KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVC 290
K G AG W GP + L R E+ D E G +
Sbjct: 218 KNSGKVAGDWYGPAVVSH----LLRKAIEESS-----------------DPELQGITIYV 256
Query: 291 IDDASRHCSVFSKGQADW-------TPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLG 343
D C++++ D +++LVP+ LG E+ N Y ++ + +G
Sbjct: 257 AQD----CTIYNADVYDLQCNKGNEKAVVILVPVRLGGERTNMEYFEYVKGILSLEFCIG 312
Query: 344 IVGGKPGASTYIVGVQEESAIYLDPHDVQPVINI 377
I+GGKP S Y VG Q++S IY+DPH Q +++
Sbjct: 313 IIGGKPKQSYYFVGFQDDSLIYMDPHYCQSFVDV 346
>sp|Q7S3X7|ATG4_NEUCR Probable cysteine protease atg-4 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=atg-4 PE=3 SV=1
Length = 506
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 126/265 (47%), Gaps = 47/265 (17%)
Query: 140 FNQDFSSRILISYRKGF-------DPIGDSKIT----------------SDVGWGCMLRS 176
F DF SRI ++YR F DP S ++ SD GWGCM+RS
Sbjct: 171 FLDDFESRIWMTYRTDFALIPRSSDPQASSALSFAMRIKTTFSDLTGFSSDTGWGCMIRS 230
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGL 235
Q L+A A+L RLGR WR+ D E +I+ LF D +P+S+HN ++ G A G
Sbjct: 231 GQSLLANAILIARLGREWRRGTD--LDAEK-DIIALFADDPRAPYSLHNFVKYGATACGK 287
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 295
G W GP A R +ALA ++GL S G P V D
Sbjct: 288 YPGEWFGPSATARCIQALA--DEKQSGLRVYST---------------GDLPDVYEDSFM 330
Query: 296 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 355
+ +G + P L+LV LG++K+N Y L T PQS+GI GG+P +S Y
Sbjct: 331 AVANPDGRG---FQPTLILVCTRLGIDKINQVYEEALISTLQLPQSIGIAGGRPSSSHYF 387
Query: 356 VGVQEESAIYLDPHDVQPVINIGKD 380
VGVQ + YLDPH +P + +D
Sbjct: 388 VGVQGQRLFYLDPHHPRPALPYRED 412
>sp|Q2U5B0|ATG4_ASPOR Probable cysteine protease atg4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=atg4 PE=3 SV=2
Length = 407
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 145/349 (41%), Gaps = 71/349 (20%)
Query: 92 RRIHERVLGPSRTGISSSTSDIWLLGVCH-----KIA-----------QDE------ALG 129
+RI + + P + IW LGV + KI QDE +
Sbjct: 11 KRIVQYIWDPEPRNDEEPDASIWCLGVEYAPQPQKITANTTPGKLGNYQDELEAGTSKID 70
Query: 130 DAAGNNGLAEFNQDFSSRILISYRKGFDPI-----------------------GDSKITS 166
D + F DF S+I ++YR F PI TS
Sbjct: 71 DVTAHGWPEAFVSDFESKIWMTYRSDFPPIPRLDNDEANHPMTLTVRIRTQLMDPQGFTS 130
Query: 167 DVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 226
D GWGCM+RS Q L+A A+L LGR WR+ + E +L LF D +P SIH
Sbjct: 131 DTGWGCMIRSGQSLLANAMLTLCLGRDWRRGDKA---EEEARLLSLFADHPDAPLSIHRF 187
Query: 227 LQAG-KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGG 285
++ G ++ G G W GP A R EAL+ C ++ +YV + D
Sbjct: 188 VKYGAESCGKHPGEWFGPSATARCIEALS--------AQCGNIAPRVYVTNDTSD----- 234
Query: 286 APVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIV 345
V D R V G P L+L+ LG++ V P Y L+ PQS+GI
Sbjct: 235 ---VYEDSFLR---VARSGSGSIQPTLILLGTRLGIDNVTPVYWDGLKAVLQLPQSVGIA 288
Query: 346 GGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDL---EADTSTYHS 391
GG+P AS Y +G Q YLDPH +P + D + + STYH+
Sbjct: 289 GGRPSASHYFIGTQGPHFFYLDPHTTRPAVPYSIDGRLLSKTEISTYHT 337
>sp|Q523C3|ATG4_MAGO7 Cysteine protease ATG4 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=ATG4 PE=3 SV=2
Length = 491
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 120/271 (44%), Gaps = 53/271 (19%)
Query: 140 FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCMLRS 176
F DF SRI ++YR GF+PI S T+D GWGCM+R+
Sbjct: 151 FLNDFESRIWMTYRSGFEPIPRSTDPTASSRMSFAMRLKTMADQQAGFTTDSGWGCMIRT 210
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GL 235
Q L+A +LL RLGR WR+ Q P E ++L LF D +P+SIHN + G A G
Sbjct: 211 GQSLLANSLLTCRLGRSWRR-GQAP--DEERKLLSLFADDPRAPYSIHNFVAHGAAKCGK 267
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDAS 295
G W GP A R ALA +Y G P V D
Sbjct: 268 YPGEWFGPSATARCIHALANATENS---------FRVYST--------GDLPDVYEDS-- 308
Query: 296 RHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYI 355
V + P L+L+ LG++K+N Y +L T PQS+GI GG+P +S Y
Sbjct: 309 -FMEVAKPDGKTFHPTLILISTRLGIDKINQVYWESLTATLQLPQSVGIAGGRPSSSHYF 367
Query: 356 VGVQEESA------IYLDPHDVQPVINIGKD 380
VG Q YLDPH +P + +D
Sbjct: 368 VGAQRSDEDQGSYLFYLDPHHTRPALPFHED 398
>sp|Q86ZL5|ATG4_PODAS Probable cysteine protease ATG4 OS=Podospora anserina GN=ATG4 PE=3
SV=1
Length = 500
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 119/263 (45%), Gaps = 61/263 (23%)
Query: 140 FNQDFSSRILISYRKGFDPI----------------------GD-SKITSDVGWGCMLRS 176
F DF SRI ++YR GF+ I GD + +SD GWGCM+RS
Sbjct: 173 FLDDFESRIWMTYRTGFEVIPRSTDPKAAAALSFTMRFKTSFGDQTGFSSDTGWGCMIRS 232
Query: 177 SQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY-GL 235
Q L+A A+L R GR WR+ +R EI+ LF D +P+SI N + G A G
Sbjct: 233 GQSLLANAMLISRAGRAWRRTTNPDIER---EIVCLFADDPRAPYSIQNFVNHGAAACGK 289
Query: 236 AAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAI---YVVSGDEDGERGGAPVVCID 292
G W GP A ARC + + LP ++ + + DG
Sbjct: 290 YPGEWFGP-------SATARCIHSLRVYLTRDLPEVYEDNFMSTANPDGNH--------- 333
Query: 293 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 352
+ P L+LV LG++K+NP Y L T PQ++GI GG+P +S
Sbjct: 334 ---------------FHPTLILVSTRLGIDKINPIYHEALISTLQLPQAIGIAGGRPSSS 378
Query: 353 TYIVGVQEESAIYLDPHDVQPVI 375
Y +G Q + YLDPH +P +
Sbjct: 379 HYFIGAQGQWLFYLDPHHPRPAL 401
>sp|Q4U3V5|ATG4_CRYPA Probable cysteine protease ATG4 OS=Cryphonectria parasitica GN=ATG4
PE=2 SV=1
Length = 459
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 127/290 (43%), Gaps = 57/290 (19%)
Query: 122 IAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSK------------------ 163
+A DE L DA F DF SR+ ++YR F+PI S
Sbjct: 109 LAYDELLEDAGWP---IAFLDDFESRVWMTYRSEFEPISKSNDPRASAALSFAMRLRTLA 165
Query: 164 ----ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETS 219
+SD GWGCM+RS Q L+A L+ +LGR WR+ R+ EIL F D +
Sbjct: 166 DQGGFSSDTGWGCMIRSGQSLLANTLVICQLGRDWRRGKAA---RQEREILARFADDPRA 222
Query: 220 PFSIHNLLQAGK-AYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGD 278
P+S+HN ++ G A G G W GP A R +ALA + + +Y
Sbjct: 223 PYSLHNFVRHGAVACGKFPGEWFGPSATARCIQALANSNESS---------LRVYST--- 270
Query: 279 EDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTF 338
G P V D +V + P L+LV LG++K+N Y L T
Sbjct: 271 -----GDLPDVYEDS---FMAVAKPDGETFHPTLILVGTRLGIDKINQVYWEALTATLQM 322
Query: 339 PQSLGIVGGKPGASTYIVGVQEES--------AIYLDPHDVQPVINIGKD 380
PQS+GI GG+P AS Y +G Q YLDPH +P + +D
Sbjct: 323 PQSVGIAGGRPSASHYFIGAQRSGDAYEPGSYLFYLDPHCTRPALPFHED 372
>sp|Q6CH28|ATG4_YARLI Probable cysteine protease ATG4 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ATG4 PE=3 SV=1
Length = 545
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 133/317 (41%), Gaps = 101/317 (31%)
Query: 139 EFNQDFSSRILISYRKGF--------------------------DPIGDSKITSDVGWGC 172
+F D SRI +SYR GF DP G TSDVGWGC
Sbjct: 64 DFLADVQSRIWLSYRTGFPLIPKSDGSGTIHLGKLKNMIRGGGFDPRG---YTSDVGWGC 120
Query: 173 MLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVE------------------------ 208
M+R+SQ L+A ALLF LGR WR K D Y+
Sbjct: 121 MIRTSQSLLANALLFRHLGRGWR--WNKGDDFVYLSEGNTESRGGESRNGGANKEQETAV 178
Query: 209 ----------ILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWEALARCQ 257
I+ F DS SPFSIH ++ G KA AG W GP A S AL
Sbjct: 179 SEETAVSEETIISWFLDSPDSPFSIHKFVRHGEKACSTPAGDWFGPSAAGSSIYAL---- 234
Query: 258 RAETGLGCQSLP---MAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLL 314
C P + +Y +G GG V D+ + G P+L+L
Sbjct: 235 -------CNEFPDSGLKVYY-----NGNGGGD--VYEDE------LLETG----FPLLVL 270
Query: 315 VPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPV 374
L LG++ VNP Y +LR + PQS+GI GG+P S Y G Q E YLDPH +P
Sbjct: 271 CGLRLGIDNVNPIYWDSLRQMLSLPQSVGIAGGRPFTSHYFFGFQGEQLFYLDPHQPKPA 330
Query: 375 INIGKDDLEADTSTYHS 391
+ + DT+++HS
Sbjct: 331 VKT----TDKDTTSFHS 343
>sp|A7KAL5|ATG4_PENCW Probable cysteine protease atg4 OS=Penicillium chrysogenum (strain
ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg4 PE=3
SV=1
Length = 401
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 135/313 (43%), Gaps = 69/313 (22%)
Query: 113 IWLLGVCHKIAQDEALGDAAGNNGLAE-----------------FNQDFSSRILISYRKG 155
IW LG + A + D A NN + F DF SRI I+YR
Sbjct: 29 IWCLG--REYAPSQPPSDPASNNPRSPSRQPNASTLNDTTWPKAFLSDFGSRIWITYRSN 86
Query: 156 FDPIGDSK-----------------------ITSDVGWGCMLRSSQMLVAQALLFHRLGR 192
F PI +K TSD GWGCM+RS Q L+A LGR
Sbjct: 87 FTPIPRTKTPEATSSMTLGVRLRSQLMDPQGFTSDTGWGCMIRSGQSLLANTFSVLLLGR 146
Query: 193 PWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAAGSWVGPYAMCRSWE 251
WR+ + E +++ +F D +PFSIH + G ++ G G W GP
Sbjct: 147 DWRRGEKV---EEESKLISMFADHPEAPFSIHRFVNRGAESCGKYPGEWFGP-------S 196
Query: 252 ALARCQRAETGLGCQS-LP-MAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWT 309
A A+C + L QS +P + +Y+ + D +D H + G+
Sbjct: 197 ATAKCIQL---LSTQSEVPQLRVYLTNDTSD---------VYEDKFAHVAHDESGRIQ-- 242
Query: 310 PILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPH 369
P L+L+ LG++ V P Y LR T+PQS+GI GG+P AS Y VG Q+ +LDPH
Sbjct: 243 PTLILIGTRLGIDNVTPAYWDGLRAALTYPQSVGIAGGRPSASHYFVGAQDCHLFFLDPH 302
Query: 370 DVQPVINIGKDDL 382
+P D L
Sbjct: 303 TTRPATLYRPDGL 315
>sp|Q68EP9|ATG4C_XENTR Cysteine protease ATG4C OS=Xenopus tropicalis GN=atg4c PE=2 SV=1
Length = 450
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 137/334 (41%), Gaps = 91/334 (27%)
Query: 110 TSDIWLLGVCHKIAQDEA--LGDAAGNNG----------LAEFNQDFSSRILISYRKGFD 157
S ++LLG C+ +++ D N+G + EF +DF SRI ++YR+ F
Sbjct: 38 NSPVFLLGKCYHFKYEDSSVTSDGGSNSGSESKEDLSGNVDEFRKDFISRIWLTYREEFP 97
Query: 158 PIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW----------------------- 194
I S T+D GWGC LR+ QML+AQ L+ H LGR W
Sbjct: 98 QIETSSWTTDCGWGCTLRTGQMLLAQGLIVHFLGRDWTWTEALDIFSSESEFWTANTARK 157
Query: 195 -------------------RKPLQKPFDREYVEILH-----LFGDSETSPFSIHNLLQAG 230
++PL + E H F D + F +H L++ G
Sbjct: 158 LTPSLETSFSENNECVSSNKQPLHNCDKKSNSEDFHQKIISWFADYPLAYFGLHQLVKLG 217
Query: 231 KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVC 290
K G AG W GP + L R E+ D E G +
Sbjct: 218 KNSGKVAGDWYGPAVVSH----LLRKAIEESS-----------------DPELQGITIYV 256
Query: 291 IDDASRHCSVFSKGQADW-------TPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLG 343
D C+++S D +++LVP+ LG E+ N Y ++ + +G
Sbjct: 257 AQD----CTIYSADVYDLQCNKGTEKAVVILVPVRLGGERTNMEYFEFVKGILSLEFCIG 312
Query: 344 IVGGKPGASTYIVGVQEESAIYLDPHDVQPVINI 377
I+GGKP S Y VG Q++S IY+DPH Q +++
Sbjct: 313 IIGGKPKQSYYFVGFQDDSLIYMDPHYCQSFVDV 346
>sp|Q5B7L0|ATG4_EMENI Cysteine protease atg4 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg4 PE=3
SV=2
Length = 402
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 148/341 (43%), Gaps = 64/341 (18%)
Query: 92 RRIHERVLGPSRTGISSSTSDIWLLGV-----CHKIAQDEALGDAAGNN--------GLA 138
+RI + + P S IW LG C + DE+ G G
Sbjct: 11 KRIIQYIWDPEPKNDEEPGSPIWCLGTRYPPQCVEETADESRNPDHGQQQNTNTSAPGWP 70
Query: 139 E-FNQDFSSRILISYRKGFDPIGDSK-----------------------ITSDVGWGCML 174
E F DF S+I ++YR F PI TSD GWGCM+
Sbjct: 71 EAFLLDFESKIWMTYRSNFPPIPKDAGQEGSLSLTLGVRLRSQLIDAQGFTSDTGWGCMI 130
Query: 175 RSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAY- 233
RS Q L+A ++ LGR WR+ + E ++L LF DS +PFSIH+ ++ G +
Sbjct: 131 RSGQSLLANSMAILLLGRDWRRGERL---EEEGKLLSLFADSPHAPFSIHSFVKHGADFC 187
Query: 234 GLAAGSWVGPYAMCRSWEALA-RCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 292
G G W GP A R + LA R ++ + +Y+ + D + V D
Sbjct: 188 GKHPGEWFGPTATARCIQGLAARYDQSN---------LQVYIADDNSDVHQDKFMSVSRD 238
Query: 293 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 352
+ KG P L+L+ L LG++++ Y L+ PQS+GI GG+P AS
Sbjct: 239 E---------KGTV--RPTLILLGLRLGIDRITAVYWNGLKAVLQLPQSVGIAGGRPSAS 287
Query: 353 TYIVGVQEESAIYLDPHDVQPVINIGKDD--LEADTSTYHS 391
Y V VQ YLDPH+ +P + + E + +TYH+
Sbjct: 288 HYFVAVQGSHFFYLDPHNTRPALRYSESGTYTEDEVNTYHT 328
>sp|Q68FJ9|ATG4D_XENLA Cysteine protease ATG4D OS=Xenopus laevis GN=atg4d PE=2 SV=1
Length = 469
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 131/295 (44%), Gaps = 54/295 (18%)
Query: 134 NNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRP 193
++ + F +DF SR+ ++YR+ F + + +T+D GWGCM+RS QML+AQ LL H L R
Sbjct: 93 DDEIERFQKDFVSRVWLTYRRDFPALEGTALTTDCGWGCMIRSGQMLLAQGLLLHLLSRE 152
Query: 194 WR--KPLQKPF----------------------------------------DREYVEILH 211
W + L + F D+ + I+
Sbjct: 153 WTWSEALYRHFVEMEPIRSSSPPSMPLSSLATGHSAGDYQPHTQCSGAPHGDQVHRNIMR 212
Query: 212 LFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMA 271
F D SPF +H L+ G +G AG W GP +A + + ++
Sbjct: 213 WFSDHPGSPFGLHQLVTLGSIFGKKAGDWYGP-------SIVAHIIKKAIETSSEVPELS 265
Query: 272 IYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPT 331
+Y VS D + + D + G+A +++LVP+ LG E NP Y
Sbjct: 266 VY-VSQDCTVYKADIEQLFAGDVPHAETSRGAGKA----VIILVPVRLGGETFNPVYKHC 320
Query: 332 LRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADT 386
L+ P LGI+GGKP S Y +G Q+ +YLDPH QP I+ K+D ++
Sbjct: 321 LKEFLRMPSCLGIIGGKPKHSLYFIGYQDNYLLYLDPHYCQPYIDTSKNDFPLES 375
>sp|P0CQ10|ATG4_CRYNJ Cysteine protease ATG4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=ATG4 PE=3
SV=1
Length = 1193
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 164 ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDRE---------------YVE 208
+TSD GWGCMLR+ Q L+ AL+ LGR WR P E Y +
Sbjct: 562 LTSDAGWGCMLRTGQSLLVNALIHIHLGRDWRVPSTPASFSEATTTQEIAALKDYAKYAQ 621
Query: 209 ILHLFGD--SETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQ 266
+L F D S PFS+H + GK G G W GP + + LA A G+
Sbjct: 622 MLSWFLDDPSPLCPFSVHRMALIGKELGKEVGEWFGPSTAAGALKTLANS-FAPCGVAVA 680
Query: 267 SLPMAI------YVVSG-DEDGERGGAPVVCIDDASRHCSVFSKGQADW--TPILLLVPL 317
+ +I Y S D +P R +K + W +L+LV +
Sbjct: 681 TATDSIIYKSDVYTASNLPSDDWNSISPTFNSSKKKRRGDNEAK-EEKWGKRAVLILVGV 739
Query: 318 VLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINI 377
LGL+ VNP Y +++ FTFPQS+GI GG+P +S Y VG Q YLDPH +P I +
Sbjct: 740 RLGLDGVNPIYYDSIKALFTFPQSVGIAGGRPSSSYYFVGSQANHLFYLDPHLTRPAIPL 799
>sp|P0CQ11|ATG4_CRYNB Cysteine protease ATG4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=ATG4 PE=3 SV=1
Length = 1193
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 164 ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDRE---------------YVE 208
+TSD GWGCMLR+ Q L+ AL+ LGR WR P E Y +
Sbjct: 562 LTSDAGWGCMLRTGQSLLVNALIHIHLGRDWRVPSTPASFSEATTTQEIAALKDYAKYAQ 621
Query: 209 ILHLFGD--SETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQ 266
+L F D S PFS+H + GK G G W GP + + LA A G+
Sbjct: 622 MLSWFLDDPSPLCPFSVHRMALIGKELGKEVGEWFGPSTAAGALKTLANS-FAPCGVAVA 680
Query: 267 SLPMAI------YVVSG-DEDGERGGAPVVCIDDASRHCSVFSKGQADW--TPILLLVPL 317
+ +I Y S D +P R +K + W +L+LV +
Sbjct: 681 TATDSIIYKSDVYTASNLPSDDWNSISPTFNSSKKKRRGDNEAK-EEKWGKRAVLILVGV 739
Query: 318 VLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINI 377
LGL+ VNP Y +++ FTFPQS+GI GG+P +S Y VG Q YLDPH +P I +
Sbjct: 740 RLGLDGVNPIYYDSIKALFTFPQSVGIAGGRPSSSYYFVGSQANHLFYLDPHLTRPAIPL 799
>sp|Q8NJJ3|ATG4_PICPA Probable cysteine protease ATG4 OS=Komagataella pastoris GN=ATG4
PE=3 SV=1
Length = 533
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 117/267 (43%), Gaps = 50/267 (18%)
Query: 140 FNQDFSSRILISYRKGFDPIGDSK---------------------ITSDVGWGCMLRSSQ 178
F D S+I ++YR GF PI K TSD GWGCM+R+SQ
Sbjct: 65 FIDDVYSKIWLTYRAGFPPIARDKDSPTFTLGALLRGQFDFNEIGFTSDAGWGCMIRTSQ 124
Query: 179 MLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG-KAYGLAA 237
L+A ALLF LGR W + P + E+ I+ F D PFSIHN +Q G K
Sbjct: 125 SLLANALLFLHLGRDWVFKAKDPANVEHDRIISWFVDIPDEPFSIHNFVQQGIKCCDKKP 184
Query: 238 GSWVGPYAMCRSWEALARCQRAETGLGCQSLP---MAIYVVSGDEDGERGGAPVVCIDDA 294
G W GP A R+ + L C+ P + +Y S C D
Sbjct: 185 GEWFGPSAASRAIKNL-----------CKEYPPCGLRVYFSSD------------CGDVY 221
Query: 295 SRHCSVFSKGQAD-WTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAST 353
+ G +D +TPIL+L+ + LG+EKVN LR + QS+GI G K
Sbjct: 222 DTEVRELAYGDSDTFTPILVLLGIRLGVEKVNLYIGDLLRECLSLKQSVGISGRKTSFLA 281
Query: 354 YI-VGVQEESAIYLDPHDVQPVINIGK 379
+ +G Q + YL P + + GK
Sbjct: 282 LLSIGFQGDYLFYLIPTFPKKALTFGK 308
>sp|Q9P373|ATG4_SCHPO Probable cysteine protease atg4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=atg4 PE=3 SV=1
Length = 320
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 118/280 (42%), Gaps = 50/280 (17%)
Query: 91 MRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILI 150
M R ER L + T + IW LG +KI + +F D S I I
Sbjct: 4 MARFLERYLHFAPTNTEPPGTLIWFLGHSYKIEDSQ---------WPEKFLYDSFSLITI 54
Query: 151 SYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEIL 210
+YR G + G +TSD GWGCM+RS+Q L+A L R+ P +++ EIL
Sbjct: 55 TYRSGIE--GLENMTSDTGWGCMIRSTQTLLANCL---RICYP---------EKQLKEIL 100
Query: 211 HLFGDSETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLP 269
LF D ++PFSIH + GK + G W GP C +AR +P
Sbjct: 101 ALFADEPSAPFSIHQFVTMGKTLCDINPGQWFGPTTSC---SCVARLSDQNP-----DVP 152
Query: 270 MAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYI 329
+ +YV R V P+LLL+P LG++ +N Y
Sbjct: 153 LHVYVARNGNAIYRDQLSKVSF------------------PVLLLIPTRLGIDSINESYY 194
Query: 330 PTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPH 369
L F +GI GG+P ++ Y Q + YLDPH
Sbjct: 195 DQLLQVFEIRSFVGITGGRPRSAHYFYARQNQYFFYLDPH 234
>sp|Q6BYP8|ATG4_DEBHA Probable cysteine protease ATG4 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ATG4 PE=3 SV=2
Length = 492
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 128/292 (43%), Gaps = 74/292 (25%)
Query: 130 DAAGNNGLAEFNQDFSSRILISYRKGFDPIG----------------------------- 160
D + ++G+ E QD S+I ++YR GF+PI
Sbjct: 77 DISVDDGVIE--QDIYSKIWLTYRTGFEPIAKCLDGPQPLSFVQSMVFNRNPISSTFNNF 134
Query: 161 -----DSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPW-----RKPLQKPFDREYVEIL 210
+ T+DVGWGCM+R+SQ L+A LGR + R P + EI+
Sbjct: 135 HGLLDNDNFTTDVGWGCMIRTSQALLANTYQLLFLGRGFSYGRDRSP-------RHDEII 187
Query: 211 HLFGDSETSPFSIHNLLQAGKAYGLAA--GSWVGPYAMCRSWEALARCQRAETGLGCQSL 268
+F D +PFS+HN ++ L G W GP A S + L C +
Sbjct: 188 DMFMDEPRAPFSLHNFIKVASESPLKVKPGQWFGPNAASLSIKRL-----------CDN- 235
Query: 269 PMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTP----ILLLVPLVLGLEKV 324
+Y +G G VV + ++ + + ++ P IL+L+P+ LG++KV
Sbjct: 236 ---VYESNG-----TGRVKVVISESSNLYDDIITQMFTTLNPVPDAILVLLPVRLGIDKV 287
Query: 325 NPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVIN 376
NP Y ++ QS+GI GGKP +S Y G + +YLDPH Q V N
Sbjct: 288 NPLYHASVLELLALRQSVGIAGGKPSSSFYFFGYKGNDLLYLDPHYPQFVRN 339
>sp|Q6CQ60|ATG4_KLULA Probable cysteine protease ATG4 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=ATG4 PE=3 SV=1
Length = 450
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 121/271 (44%), Gaps = 52/271 (19%)
Query: 143 DFSSRILISYRKGFDPI-----GDSKIT------------------------SDVGWGCM 173
D SR+ +YR F PI G S I SD+GWGCM
Sbjct: 64 DVHSRVFFTYRTQFTPIRRNENGPSPINFTLFFRDNPINTLENALTDPDSFYSDIGWGCM 123
Query: 174 LRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQA-GKA 232
+R+ Q L+A A+ +L R +R + D E + ++ F D P S+HN ++A K
Sbjct: 124 IRTGQALLANAIQRVKLAREFRINASRIDDNE-LNLIRWFQDDVKYPLSLHNFVKAEEKI 182
Query: 233 YGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCID 292
G+ G W GP A RS + L E C I S D + D
Sbjct: 183 SGMKPGQWFGPSATARSIKTL-----IEGFPLCGIKNCIISTQSAD----------IYED 227
Query: 293 DASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGAS 352
+ +R +F K + +LLL + LG++K+N Y + + P S+GI GGKP +S
Sbjct: 228 EVTR---IFHKDRD--ANLLLLFAVRLGVDKINSLYWKDIFKILSSPYSVGIAGGKPSSS 282
Query: 353 TYIVGVQEESAIYLDPHDVQPVINIGKDDLE 383
Y G Q E+ YLDPH+ Q ++ DDLE
Sbjct: 283 LYFFGYQNENLFYLDPHNTQQS-SLMMDDLE 312
>sp|A7TQN1|ATG4_VANPO Probable cysteine protease ATG4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=ATG4 PE=3 SV=1
Length = 411
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 51/264 (19%)
Query: 140 FNQDFSSRILISYRKGFDPIGDSK-----------------------------ITSDVGW 170
F D SRI +YR F PI S +D+GW
Sbjct: 74 FLSDVISRIHFTYRTKFIPIARSDDGPSPLRINFLIGDNPFNAIENAIYNPNCFNTDIGW 133
Query: 171 GCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAG 230
GCM+R+ Q L+A A+ LGR +R + + +I+ F D+ PFS+HN ++ G
Sbjct: 134 GCMIRTGQSLLANAIQIAILGREFRVN-DGDVNEQERKIISWFMDTPDEPFSLHNFVKKG 192
Query: 231 -KAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVV 289
+ G W GP A RS ++L Q + G+ + ++ + DE
Sbjct: 193 CELSSKKPGEWFGPAATSRSIQSLVE-QFPDCGIDRCIVSVSSADIFKDE---------- 241
Query: 290 CIDDASRHCSVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKP 349
I+D +F + ++ ILLL+ + LG++KVN Y+ +R S+GI GG+P
Sbjct: 242 -IND------IFKNKR--YSNILLLMGVKLGVDKVNEYYLKDIRKILESRYSVGISGGRP 292
Query: 350 GASTYIVGVQEESAIYLDPHDVQP 373
+S Y G Q+++ +Y DPH QP
Sbjct: 293 SSSLYFFGYQDDTLLYFDPHKPQP 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,919,173
Number of Sequences: 539616
Number of extensions: 6122804
Number of successful extensions: 12940
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12711
Number of HSP's gapped (non-prelim): 121
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)