Query 016269
Match_columns 392
No_of_seqs 175 out of 352
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p82_A Cysteine protease ATG4A 100.0 2.6E-98 9E-103 747.1 23.0 261 103-392 15-299 (355)
2 2cy7_A Cysteine protease APG4B 100.0 6E-97 2E-101 746.0 25.2 262 102-392 18-305 (396)
3 3oqc_A UFSP2, UFM1-specific pr 98.1 2.5E-05 8.4E-10 80.1 12.2 46 328-374 394-445 (481)
4 2z84_A UFSP1, UFM1-specific pr 98.0 4.1E-05 1.4E-09 71.9 10.7 27 346-372 144-175 (218)
5 3u5c_N S27A, YS15, 40S ribosom 18.9 86 0.0029 27.7 3.5 27 222-248 121-148 (151)
6 2xzm_O RPS13E; ribosome, trans 18.9 86 0.0029 27.8 3.5 27 222-248 123-150 (153)
7 1nxi_A Conserved hypothetical 16.5 29 0.00098 29.6 -0.1 9 169-177 117-125 (132)
8 3ffy_A Putative tetrapyrrole ( 15.4 64 0.0022 26.3 1.8 31 345-375 12-59 (115)
9 2fu4_A Ferric uptake regulatio 15.1 2.9E+02 0.01 20.1 5.4 49 204-256 17-65 (83)
10 2p82_A Cysteine protease ATG4A 14.1 85 0.0029 31.1 2.6 36 56-95 49-84 (355)
No 1
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=100.00 E-value=2.6e-98 Score=747.12 Aligned_cols=261 Identities=35% Similarity=0.692 Sum_probs=231.0
Q ss_pred CCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccceEEEeecCCCCCCCCCcccccCCccccccchhhHHH
Q 016269 103 RTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVA 182 (392)
Q Consensus 103 ~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLLA 182 (392)
+++++++++||||||++|+..++ .++|++||.||||||||+||+||+++++|||+||||||||||||||
T Consensus 15 ~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLA 83 (355)
T 2p82_A 15 YFQGPDTDELVWILGKQHLLKTE-----------KSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLA 83 (355)
T ss_dssp -------CCEEEETTEEEETTTT-----------HHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEecceecCCcC-----------HHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHH
Confidence 45677899999999999998754 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHhHcCCCCCcccChhHHHHHHHHHHHHHhhhcc
Q 016269 183 QALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 262 (392)
Q Consensus 183 qaL~~h~LGRdwr~~~~~~~~~~~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~va~~i~~L~~~~~~~~~ 262 (392)
|||++|+|||+|||...+..+++|++||+||+|+|+|||||||||++|.++||+|||||||+++|++|++|++.
T Consensus 84 qaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~------ 157 (355)
T 2p82_A 84 QALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALF------ 157 (355)
T ss_dssp HHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhc------
Confidence 99999999999999877667789999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCeEEEEeeCCCCCCCCCCceeeccccccccccccC------------------------CCCCCccEEEEEeee
Q 016269 263 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSK------------------------GQADWTPILLLVPLV 318 (392)
Q Consensus 263 ~~~~~~~l~vyv~s~~~dge~g~~~~v~~dd~~~~~~~~~~------------------------~~~~w~plLlLVPlR 318 (392)
.++.+++|||++|+ +++++|+.++|..... ....|+|||||||+|
T Consensus 158 --~~~~~l~v~va~D~---------~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplR 226 (355)
T 2p82_A 158 --DEWNSLAVYVSMDN---------TVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLR 226 (355)
T ss_dssp --CTTTCCEEEECBTT---------EEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEE
T ss_pred --ccccCceEEEecCC---------cEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEee
Confidence 23457999998753 7888998887753211 012699999999999
Q ss_pred ccCCCCCcchHHHHHHhhCCCCceEEecCCCCceeEEEEEeCceeEEeCCCCcccccccCCCCCCCCCCCccCC
Q 016269 319 LGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSE 392 (392)
Q Consensus 319 LGld~iNp~Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHC~ 392 (392)
||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|+++.+.++ .+++||||+
T Consensus 227 LGld~in~~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~-~~~~sfhc~ 299 (355)
T 2p82_A 227 LGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGT-VNDQTFHCL 299 (355)
T ss_dssp CCSSSCCGGGHHHHHHHHHSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSC-BCCGGGBCC
T ss_pred cCCCcCCHHHHHHHHHHhCccccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCc-CCCCceeeC
Confidence 9999999999999999999999999999999999999999999999999999999998876543 357899995
No 2
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=100.00 E-value=6e-97 Score=746.02 Aligned_cols=262 Identities=35% Similarity=0.673 Sum_probs=231.9
Q ss_pred CCCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccceEEEeecCCCCCCCCCcccccCCccccccchhhHH
Q 016269 102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV 181 (392)
Q Consensus 102 ~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLL 181 (392)
+.+++|.+++||||||++|+..++ .++|++||+||||||||+||+||+++++|||+|||||||||||||
T Consensus 18 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlL 86 (396)
T 2cy7_A 18 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF 86 (396)
T ss_dssp CCCCCCCCSSCEEETTEEECTTTC-----------HHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHH
T ss_pred ccccCCCCCCcEEEeCcEecCCcC-----------HHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHH
Confidence 568999999999999999997654 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHhHcCCCCCcccChhHHHHHHHHHHHHHhhhc
Q 016269 182 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET 261 (392)
Q Consensus 182 AqaL~~h~LGRdwr~~~~~~~~~~~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~va~~i~~L~~~~~~~~ 261 (392)
||||++|||||+|||++.+..+++|.+||+||+|+++|||||||||++|.++||+||+||||+++|++|++|++.
T Consensus 87 AqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~----- 161 (396)
T 2cy7_A 87 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF----- 161 (396)
T ss_dssp HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhc-----
Confidence 999999999999999877667778999999999999999999999999999999999999999999999999752
Q ss_pred cCCCCCCCeEEEEeeCCCCCCCCCCceeeccccccccccc--------------------cC------CCCCCccEEEEE
Q 016269 262 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVF--------------------SK------GQADWTPILLLV 315 (392)
Q Consensus 262 ~~~~~~~~l~vyv~s~~~dge~g~~~~v~~dd~~~~~~~~--------------------~~------~~~~w~plLlLV 315 (392)
+.+..++|||++++ +|+++|+.++|... .. ....|+||||||
T Consensus 162 ---~~~~~l~v~va~D~---------~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlli 229 (396)
T 2cy7_A 162 ---DTWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI 229 (396)
T ss_dssp ---CTTTCCEEEECCTT---------EEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEE
T ss_pred ---ccccCceEEEecCC---------ceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEE
Confidence 23446899998753 67778877665421 00 124699999999
Q ss_pred eeeccCCCCCcchHHHHHHhhCCCCceEEecCCCCceeEEEEEeCceeEEeCCCCcccccccCCCCCCCCCCCccCC
Q 016269 316 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSE 392 (392)
Q Consensus 316 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d~LiYLDPH~~Q~av~~~~~~~~~~~~SyHC~ 392 (392)
|+|||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++....+. .+++||||+
T Consensus 230 plRLGld~iNp~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~-~~~~s~hc~ 305 (396)
T 2cy7_A 230 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCF-IPDESFHCQ 305 (396)
T ss_dssp EEECCSSSCCGGGHHHHHHHTSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCC-CCCGGGBCC
T ss_pred EEeecCCcCCHHHHHHHHHHhCCcccceEecCccCceEEEEEEeCCEEEeeCCCccccccccccccc-CCCcceeec
Confidence 9999999999999999999999999999999999999999999999999999999999998765433 246899995
No 3
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=98.06 E-value=2.5e-05 Score=80.08 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=33.5
Q ss_pred hHHHHHHhhCCCCceEEecCCCCceeEEEEEeCc------eeEEeCCCCcccc
Q 016269 328 YIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEE------SAIYLDPHDVQPV 374 (392)
Q Consensus 328 Y~~~Lk~~f~lpqsvGIiGGrP~~SlYFvG~q~d------~LiYLDPH~~Q~a 374 (392)
....|..-|+-.-.-=++|| ..+|+=++|+.-+ +|+.|||||+-+.
T Consensus 394 l~~~L~~hF~~~GtPImiGG-~~~S~TIlGVe~~~~tG~~~lLIlDPHytg~~ 445 (481)
T 3oqc_A 394 QGRELANHFQNVGTPVMVGG-GVLAHTILGVAWNETTGQIKFLILDPHYTGAE 445 (481)
T ss_dssp GHHHHHHHHTTTCCCEEEEE-TTEEEEEEEEEECTTTCCEEEEEECTTCCSCS
T ss_pred HHHHHHHHHhccCCCEEecC-CCCCceEEEEEEecCCCeEEEEEECCCCCChH
Confidence 34667777765444556666 6799999999731 6899999998754
No 4
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=97.96 E-value=4.1e-05 Score=71.95 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.9
Q ss_pred cCCCCceeEEEEEeC-----ceeEEeCCCCcc
Q 016269 346 GGKPGASTYIVGVQE-----ESAIYLDPHDVQ 372 (392)
Q Consensus 346 GGrP~~SlYFvG~q~-----d~LiYLDPH~~Q 372 (392)
||...||.=+||+.. -+|+.||||++-
T Consensus 144 G~~~ghS~tIvGve~~~~g~~~lLIlDPhy~~ 175 (218)
T 2z84_A 144 GDADAQSKALLGICEGPGSEVYVLILDPHYWG 175 (218)
T ss_dssp CTTTSCCEEEEEEEECTTCCEEEEEECCCCCS
T ss_pred CCcccccceEEeEEecCCCcEEEEEECCCcCC
Confidence 578899999999962 279999999987
No 5
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=18.91 E-value=86 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.5
Q ss_pred hhhHHHHHHhHcCCCCCcc-cChhHHHH
Q 016269 222 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 248 (392)
Q Consensus 222 SIH~iv~~G~~~gk~pGeW-fGPs~va~ 248 (392)
-||+++..-+.-|+-|.+| |-|.++..
T Consensus 121 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 148 (151)
T 3u5c_N 121 RIHRLARYYRTVAVLPPNWKYESATASA 148 (151)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999999999999999 88888764
No 6
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=18.87 E-value=86 Score=27.77 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred hhhHHHHHHhHcCCCCCcc-cChhHHHH
Q 016269 222 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 248 (392)
Q Consensus 222 SIH~iv~~G~~~gk~pGeW-fGPs~va~ 248 (392)
-||+++..-+.-|+-|.+| |-|.++..
T Consensus 123 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 150 (153)
T 2xzm_O 123 RIHRLSRYYKLNQKLPPKWKYNAQTASA 150 (153)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCSSHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999999999999999 88887754
No 7
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=16.45 E-value=29 Score=29.58 Aligned_cols=9 Identities=33% Similarity=0.940 Sum_probs=6.9
Q ss_pred Cccccccch
Q 016269 169 GWGCMLRSS 177 (392)
Q Consensus 169 GWGCMLRsg 177 (392)
|||||+--.
T Consensus 117 GWGt~~~~~ 125 (132)
T 1nxi_A 117 GWGTYYEGL 125 (132)
T ss_dssp EEEECCCCC
T ss_pred CcceEEEcc
Confidence 999997543
No 8
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=15.41 E-value=64 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=24.2
Q ss_pred ecCCCCceeEEEEEe-----------------CceeEEeCCCCccccc
Q 016269 345 VGGKPGASTYIVGVQ-----------------EESAIYLDPHDVQPVI 375 (392)
Q Consensus 345 iGGrP~~SlYFvG~q-----------------~d~LiYLDPH~~Q~av 375 (392)
+-|-|..+++|+||- ..-+||.=||.....+
T Consensus 12 ~sGlp~~~F~F~Gflp~~~~r~~~l~~la~~~~TlVfyesp~Rl~~~l 59 (115)
T 3ffy_A 12 ASGLPNEKFCFEGFLPQKKGRMTKLKSLVDEHRTMVFYESPHRLLKTL 59 (115)
T ss_dssp HTTSCCSSEEEEESCCSSTTHHHHHHHTTTCCSEEEEEECTTTHHHHH
T ss_pred HcCCCCCcEEEEeeCCCCccHHHHHHHHhCCCCeEEEEechHHHHHHH
Confidence 468889999999993 2368999999876554
No 9
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=15.12 E-value=2.9e+02 Score=20.07 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCCCCCCchhhHHHHHHhHcCCCCCcccChhHHHHHHHHHHHH
Q 016269 204 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 256 (392)
Q Consensus 204 ~~~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~va~~i~~L~~~ 256 (392)
+....||.++.+.+..|+++..|++.-...+.. .+++++-+.|+.|.+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHC
Confidence 445789999987643589999999877554432 4789999999999874
No 10
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=14.11 E-value=85 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=24.2
Q ss_pred cccccccccccccccccccCCChhHHHHHHhhcchHHHHH
Q 016269 56 VFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIH 95 (392)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 95 (392)
+.=|||.-=+.-.....+++.||+|++|. |.|.-.|
T Consensus 49 iWfTYR~~F~~I~~s~~TSD~GWGCMlRs----gQMlLAq 84 (355)
T 2p82_A 49 LWFTYRRKFSPIGGTGPSSDAGWGCMLRC----GQMMLAQ 84 (355)
T ss_dssp BCCCEEESSCCTTTTSCSCCTTTCHHHHH----HHHHHHH
T ss_pred EEEEecCCCccCCCCCccCCCccceeeeh----hHHHHHH
Confidence 44466655443344557899999999998 6665443
Done!