BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016270
         (392 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I0O|A Chain A, Crystal Structure Of Spectinomycin Phosphotransferase,
           Aph(9)-Ia, In Complex With Adp And Spectinomcyin
 pdb|3I0Q|A Chain A, Crystal Structure Of The Amp-Bound Complex Of
           Spectinomycin Phosphotransferase, Aph(9)-Ia
 pdb|3I1A|A Chain A, Crystal Structure Of Apo Spectinomycin Phosphotransferase,
           Aph(9)-Ia
 pdb|3I1A|B Chain B, Crystal Structure Of Apo Spectinomycin Phosphotransferase,
           Aph(9)-Ia
 pdb|3Q2M|A Chain A, Crystal Structure Of Spectinomycin Phosphotransferase,
           Aph(9)-Ia, Protein Kinase Inhibitor Cki-7 Complex
          Length = 339

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 44  GLDLKTYIFLFALVPTCVFGIYVHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMERLC 103
           G+D+ T  F+     T  F      +  SYF++            + + YH+ +++  + 
Sbjct: 20  GIDIHTAQFIQGGADTNAFAYQADSESKSYFIK------------LKYGYHDEINLSIIR 67

Query: 104 KLHGWGIRE--YPRRVYDAVLFS 124
            LH  GI+E  +P    +A LF 
Sbjct: 68  LLHDSGIKEIIFPIHTLEAKLFQ 90


>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
           (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
           A Resolution
 pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
           (Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
           A Resolution
 pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
           (Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
           A Resolution
          Length = 375

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 170 KFVDPRLTYGTIGGR--FKKGENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPS 227
           K    +L YG I G   FKK     V + Y  V  +Q+L+  G T  +LL++  + E P 
Sbjct: 51  KLQGTKLNYGWIEGSPAFKKS----VSQLYTGVKPEQILQTNGATGANLLVLYSLIE-PG 105

Query: 228 RHTINL 233
            H I+L
Sbjct: 106 DHVISL 111


>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
           With Adp And An Inhibitor
 pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
           With An Inhibitor
 pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
           With An Inhibitor
          Length = 241

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 43  RGLDLKTYIFLFALVPTCVFGIYVHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMERL 102
           + L+L   I+L A   TC+  IY+ G       R   +  P  + E  HY HE+  + R 
Sbjct: 149 QSLELDGIIYLQATPETCLHRIYLRG-------RNEEQGIPLEYLEKLHYKHESWLLHRT 201

Query: 103 CKLHGWGIREYPRRVYDA 120
            K +   ++E P    D 
Sbjct: 202 LKTNFDYLQEVPILTLDV 219


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,806,563
Number of Sequences: 62578
Number of extensions: 551992
Number of successful extensions: 1400
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 13
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)