BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016270
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02527|MGAT3_RAT Beta-1,4-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase OS=Rattus
norvegicus GN=Mgat3 PE=1 SV=2
Length = 538
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 54/312 (17%)
Query: 111 REYPRRVYDAVLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSA--HRDQ 168
RE PRRV +A+ ++E D+L +R+ EL + FV+ ESN T G+P+PL F
Sbjct: 206 REVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGT 265
Query: 169 FKFVDPRLTYGTI-----GGRFKKGENPFVEEAYQRVAL--DQLLKIAGITDDDLLIMSD 221
F+++ ++ Y + GGR ++ ++ + Y R L D + ++ + DD+ I+ D
Sbjct: 266 FEYIRHKVLYVFLDHFPPGGR----QDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDD 321
Query: 222 VDEIPSRHTINLLRWCDDIPPVLHLRLKNYLYSF-------------------EFLVDNN 262
DEIP+R + L+ D ++ LY F + + +
Sbjct: 322 ADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTIDMLQAVYGLD 381
Query: 263 SWRASVHRYQTGKTRYAHYRQSDDILAD---------AGWHCSFCFRHISEFTFKMKAYS 313
R +Y T + ++ IL AGWHCS+CF + FK+ +
Sbjct: 382 GIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIY-FKLVSAQ 440
Query: 314 HFDRVRFSYFLNHKRIQ--KVICKGADLFDMLPEEYTFKEIIGKMGPVPHSFSAVHLPSY 371
+ D R+ + + + + + + + FD +EY P ++ P Y
Sbjct: 441 NGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEY----------PPADPSEHMYAPKY 490
Query: 372 LLENADKYKFLL 383
LL+N D++++LL
Sbjct: 491 LLKNYDQFRYLL 502
>sp|Q10470|MGAT3_MOUSE Beta-1,4-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase OS=Mus musculus
GN=Mgat3 PE=1 SV=2
Length = 538
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 54/312 (17%)
Query: 111 REYPRRVYDAVLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSA--HRDQ 168
RE PRRV +A+ ++E D+L +R+ EL + FV+ +SN T G+P+PL F
Sbjct: 206 REVPRRVINAININHEFDLLDVRFHELGDVVDAFVVCDSNFTAYGEPRPLKFREMLTNGT 265
Query: 169 FKFVDPRLTYGTI-----GGRFKKGENPFVEEAYQRVAL--DQLLKIAGITDDDLLIMSD 221
F+++ ++ Y + GGR ++ ++ + Y R L D + ++ + DD+ I+ D
Sbjct: 266 FEYIRHKVLYVFLDHFPPGGR----QDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDD 321
Query: 222 VDEIPSRHTINLLRWCDDIPPVLHLRLKNYLYSF-------------------EFLVDNN 262
DEIP+R + L+ D ++ LY F + + +
Sbjct: 322 ADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTMDMLQAVYGLD 381
Query: 263 SWRASVHRYQTGKTRYAHYRQSDDILAD---------AGWHCSFCFRHISEFTFKMKAYS 313
R +Y T + ++ IL AGWHCS+CF + FK+ +
Sbjct: 382 GIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIY-FKLVSAQ 440
Query: 314 HFDRVRFSYFLNHKRIQ--KVICKGADLFDMLPEEYTFKEIIGKMGPVPHSFSAVHLPSY 371
+ D R+ + + + + + + + FD +EY P ++ P Y
Sbjct: 441 NGDFPRWGDYEDKRDLNYIRSLIRTGGWFDGTQQEY----------PPADPSEHMYAPKY 490
Query: 372 LLENADKYKFLL 383
LL+N D++++LL
Sbjct: 491 LLKNYDQFRYLL 502
>sp|Q09327|MGAT3_HUMAN Beta-1,4-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase OS=Homo sapiens
GN=MGAT3 PE=2 SV=3
Length = 533
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 139/312 (44%), Gaps = 54/312 (17%)
Query: 111 REYPRRVYDAVLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSA--HRDQ 168
RE PRRV +A+ ++E D+L +R+ EL + FV+ ESN T G+P+PL F
Sbjct: 202 REVPRRVINAINVNHEFDLLDVRFHELGDVVDAFVVCESNFTAYGEPRPLKFREMLTNGT 261
Query: 169 FKFVDPRLTYGTI-----GGRFKKGENPFVEEAYQRVAL--DQLLKIAGITDDDLLIMSD 221
F+++ ++ Y + GGR ++ ++ + Y R L D + ++ + DD+ I+ D
Sbjct: 262 FEYIRHKVLYVFLDHFPPGGR----QDGWIADDYLRTFLTQDGVSRLRNLRPDDVFIIDD 317
Query: 222 VDEIPSRHTINLLRWCDDIPPVLHLRLKNYLYSF-------------------EFLVDNN 262
DEIP+R + L+ D ++ LY F + + +
Sbjct: 318 ADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWKQPGTLEVVSGCTVDMLQAVYGLD 377
Query: 263 SWRASVHRYQTGKTRYAHYRQSDDILAD---------AGWHCSFCFRHISEFTFKMKAYS 313
R +Y T + ++ IL AGWHCS+CF + FK+ +
Sbjct: 378 GIRLRRRQYYTMPNFRQYENRTGHILVQWSLGSPLHFAGWHCSWCFTPEGIY-FKLVSAQ 436
Query: 314 HFDRVRFSYFLNHKRIQKV--ICKGADLFDMLPEEYTFKEIIGKMGPVPHSFSAVHLPSY 371
+ D R+ + + + + + + + FD +EY + P H ++ P Y
Sbjct: 437 NGDFPRWGDYEDKRDLNYIRGLIRTGGWFDGTQQEYPPAD------PSEHMYA----PKY 486
Query: 372 LLENADKYKFLL 383
LL+N D++ +LL
Sbjct: 487 LLKNYDRFHYLL 498
>sp|A1T8E8|SYA_MYCVP Alanine--tRNA ligase OS=Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1) GN=alaS PE=3 SV=1
Length = 898
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 5 MTNEGGHYCSKKSDDICGNVCGQESNRGLSMSRIRCIMRGLD-------LKTYIFLFALV 57
M NE G SK+ +I G + + + G+ + R+ C+++G+D L+ I L A +
Sbjct: 204 MQNERGEGTSKEDFEILGPLPRKNIDTGMGVERVACLLQGVDNVYETDLLRPAIDLVAGI 263
Query: 58 PTCVFGIYVHGQKISY 73
+G VH + Y
Sbjct: 264 APRGYGQGVHEDDVRY 279
>sp|Q9D2Q2|TRM44_MOUSE Probable tRNA (uracil-O(2)-)-methyltransferase OS=Mus musculus
GN=Trmt44 PE=2 SV=2
Length = 713
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 206 LKIAGITDDDLLIMSDVDEIPSRHTINLLRWCDDIPPVLHLRLKNYLYSFEFLVDNNSWR 265
L+ IT D + VD + H+ L W PV+ R Y+ F V +
Sbjct: 356 LEEGSITPSDETLFPGVDWLIGNHSDELTPWI----PVIAARSS---YTCRFFVLPCCFF 408
Query: 266 ASVHRYQTGKTRYAHYRQSDDILADAGWHCSFCFRHISEFTFKMKA 311
V RYQ ++R YR+ D + + G C F H+ E ++ +
Sbjct: 409 DFVGRYQRQQSRKTQYREYLDFVLEVGLSCGF---HVQEDCLRIPS 451
>sp|O64905|FPPS_HELAN Farnesyl pyrophosphate synthase OS=Helianthus annuus GN=FPS1 PE=2
SV=1
Length = 341
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 161 VFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQRVALDQLLKIAGITDDDLLIMS 220
F H D +++D L Y GG+ +G + V ++Y QLLK A +TDD++ + S
Sbjct: 25 AFEFHHDSRQWIDKMLDYNVPGGKLNRGLS--VVDSY------QLLKGAELTDDEIFLAS 76
>sp|Q8IYL2|TRM44_HUMAN Probable tRNA (uracil-O(2)-)-methyltransferase OS=Homo sapiens
GN=TRMT44 PE=2 SV=2
Length = 757
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 206 LKIAGITDDDLLIMSDVDEIPSRHTINLLRWCDDIPPVLHLRLKNYLYSFEFLVDNNSWR 265
L+ IT +D + DVD + H+ L W PV+ R Y+ F V +
Sbjct: 400 LEEDAITPNDKTLFPDVDWLIGNHSDELTPWI----PVIAARSS---YNCRFFVLPCCFF 452
Query: 266 ASVHRYQTGKTRYAHYRQSDDILADAGWHCSFCFRHISEFTFKM 309
+ RY +++ YR+ D + + G+ C F H+ E ++
Sbjct: 453 DFIGRYSRRQSKKTQYREYLDFIKEVGFTCGF---HVDEDCLRI 493
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,734,810
Number of Sequences: 539616
Number of extensions: 6944291
Number of successful extensions: 16741
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16728
Number of HSP's gapped (non-prelim): 10
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)