Query 016270
Match_columns 392
No_of_seqs 170 out of 209
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04724 Glyco_transf_17: Glyc 100.0 2E-115 5E-120 873.5 28.7 354 34-391 2-356 (356)
2 cd02511 Beta4Glucosyltransfera 95.4 0.76 1.6E-05 42.8 15.2 89 120-235 5-93 (229)
3 PF13704 Glyco_tranf_2_4: Glyc 86.8 3.8 8.3E-05 32.9 7.6 84 125-228 2-86 (97)
4 TIGR01556 rhamnosyltran L-rham 81.9 11 0.00023 36.0 9.5 95 121-235 1-95 (281)
5 PF12661 hEGF: Human growth fa 74.7 1.5 3.2E-05 24.2 0.7 12 72-83 1-12 (13)
6 cd02526 GT2_RfbF_like RfbF is 72.0 40 0.00087 30.6 10.0 93 121-234 4-96 (237)
7 cd06437 CESA_CaSu_A2 Cellulose 70.2 65 0.0014 29.4 11.1 105 121-242 7-116 (232)
8 cd04186 GT_2_like_c Subfamily 65.2 49 0.0011 27.6 8.5 91 121-235 3-96 (166)
9 PF00535 Glycos_transf_2: Glyc 61.5 31 0.00067 28.5 6.5 93 121-234 4-99 (169)
10 PF13641 Glyco_tranf_2_3: Glyc 61.4 1E+02 0.0022 27.8 10.4 104 117-237 3-111 (228)
11 TIGR03595 Obg_CgtA_exten Obg f 60.1 7.1 0.00015 30.9 2.2 21 202-222 45-65 (69)
12 cd00761 Glyco_tranf_GTA_type G 59.8 72 0.0016 25.4 8.3 93 121-234 3-98 (156)
13 cd06436 GlcNAc-1-P_transferase 59.4 1.3E+02 0.0029 26.8 13.1 116 121-249 3-125 (191)
14 cd02522 GT_2_like_a GT_2_like_ 58.2 94 0.002 27.7 9.5 23 213-235 72-94 (221)
15 cd04187 DPM1_like_bac Bacteria 58.1 64 0.0014 28.1 8.2 93 122-235 4-102 (181)
16 cd06439 CESA_like_1 CESA_like_ 54.7 1.3E+02 0.0028 27.6 10.0 99 113-234 27-130 (251)
17 cd06421 CESA_CelA_like CESA_Ce 54.0 83 0.0018 28.3 8.5 23 213-235 84-106 (234)
18 cd06435 CESA_NdvC_like NdvC_li 54.0 1.1E+02 0.0023 27.9 9.3 34 201-235 73-106 (236)
19 cd06442 DPM1_like DPM1_like re 53.4 78 0.0017 28.3 8.2 93 121-234 3-99 (224)
20 cd06423 CESA_like CESA_like is 52.1 1.3E+02 0.0028 24.6 11.5 32 213-244 78-110 (180)
21 PF09269 DUF1967: Domain of un 49.6 12 0.00025 29.6 1.8 21 202-222 45-65 (69)
22 cd02520 Glucosylceramide_synth 48.5 89 0.0019 27.9 7.7 34 199-235 75-108 (196)
23 PRK14716 bacteriophage N4 adso 44.9 1.2E+02 0.0026 32.8 9.1 22 214-235 159-180 (504)
24 cd04179 DPM_DPG-synthase_like 44.2 1.5E+02 0.0033 25.4 8.4 24 213-236 79-102 (185)
25 cd06434 GT2_HAS Hyaluronan syn 43.1 37 0.00079 30.8 4.4 41 199-243 66-107 (235)
26 PRK05454 glucosyltransferase M 43.0 1.3E+02 0.0028 33.9 9.3 34 200-234 208-241 (691)
27 cd04185 GT_2_like_b Subfamily 42.4 2.4E+02 0.0052 24.8 10.4 92 125-235 7-101 (202)
28 COG1215 Glycosyltransferases, 41.8 34 0.00073 34.5 4.3 37 199-238 126-163 (439)
29 PRK14583 hmsR N-glycosyltransf 40.9 80 0.0017 32.8 7.0 23 212-234 154-176 (444)
30 PRK11204 N-glycosyltransferase 38.9 2E+02 0.0043 29.2 9.4 35 200-237 124-159 (420)
31 TIGR03469 HonB hopene-associat 38.6 2.8E+02 0.0061 28.2 10.4 105 116-234 41-154 (384)
32 PF10111 Glyco_tranf_2_2: Glyc 37.8 2.4E+02 0.0051 27.3 9.3 25 212-236 87-111 (281)
33 TIGR03472 HpnI hopanoid biosyn 36.1 1.9E+02 0.0041 29.2 8.7 33 200-235 116-148 (373)
34 cd04184 GT2_RfbC_Mx_like Myxoc 34.8 3.1E+02 0.0067 23.9 9.6 93 123-235 10-105 (202)
35 PRK10714 undecaprenyl phosphat 34.1 3.1E+02 0.0067 27.4 9.7 98 116-234 7-111 (325)
36 cd04190 Chitin_synth_C C-termi 33.7 1.5E+02 0.0033 27.7 7.1 32 212-243 72-104 (244)
37 cd06438 EpsO_like EpsO protein 32.5 72 0.0016 28.1 4.4 24 212-235 80-103 (183)
38 PF13506 Glyco_transf_21: Glyc 28.1 83 0.0018 28.6 4.1 33 201-235 21-53 (175)
39 cd02510 pp-GalNAc-T pp-GalNAc- 28.1 4.4E+02 0.0096 25.3 9.4 94 122-234 5-104 (299)
40 cd02525 Succinoglycan_BP_ExoA 26.5 4.7E+02 0.01 23.4 10.4 23 213-235 81-103 (249)
41 cd04192 GT_2_like_e Subfamily 24.5 1.3E+02 0.0028 26.7 4.7 33 200-235 72-104 (229)
42 cd04188 DPG_synthase DPG_synth 23.9 5.2E+02 0.011 23.0 9.4 32 201-235 73-104 (211)
43 PRK13915 putative glucosyl-3-p 22.7 6.8E+02 0.015 24.8 9.8 31 201-234 106-137 (306)
44 cd00218 GlcAT-I Beta1,3-glucur 20.1 2.9E+02 0.0062 27.0 6.2 44 193-236 74-118 (223)
No 1
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=100.00 E-value=2.1e-115 Score=873.49 Aligned_cols=354 Identities=59% Similarity=1.079 Sum_probs=341.7
Q ss_pred ccccceeeccccchHHHHHHHHhhhhheeeEEEeceeEeeecCCCCCCCCCCCCCcceeeccCccHHhHHhhcCCcccCC
Q 016270 34 SMSRIRCIMRGLDLKTYIFLFALVPTCVFGIYVHGQKISYFLRPLWESPPKPFHEIPHYYHENVSMERLCKLHGWGIREY 113 (392)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~~~~p~~~~p~~~~~~~~~~~~c~~hg~~~r~~ 113 (392)
+|||++|+++++ ++++++++|+|+++++.++++++|+|||+|||||+|||+||||||++.+|.++|++|||++|++
T Consensus 2 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~rp~w~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~R~~ 77 (356)
T PF04724_consen 2 SMSRRRCILRGL----FLFLFVLLPLCVIGVYQHGQSISCFCRPGWHGPPDPFCGIPHYYWESVSMSNLCQLHGWKPRKT 77 (356)
T ss_pred cchhHHHHHHHH----HHHHHHHHHHHhheeeecCceeEEeccCccCCCCCCCCCCCcceeecchhhhcccccCCCcCCC
Confidence 688999999986 6779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCC-CChh
Q 016270 114 PRRVYDAVLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKG-ENPF 192 (392)
Q Consensus 114 pRkIyD~f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~-~~~w 192 (392)
||||||||+||+|+|||||||+||+||||+|||||||.||+|.||||+|.+|++||+++++||+|+++++.+..+ .++|
T Consensus 78 pRrV~D~~~f~~ElDlLeiRl~eL~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~g~~~~w 157 (356)
T PF04724_consen 78 PRRVYDCFLFNNELDLLEIRLNELYDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEKGRKDPW 157 (356)
T ss_pred CCeEEEEEEeCChHHHHHHHHHHhhCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCCCCCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876554 4999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhhhcCCCCCceEEEEeeeeeeeeeeecCCCceeeEEEec
Q 016270 193 VEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLRWCDDIPPVLHLRLKNYLYSFEFLVDNNSWRASVHRYQ 272 (392)
Q Consensus 193 ~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk~cdg~p~~l~l~lr~~~YsF~~~~~~~sW~~s~~~Y~ 272 (392)
++|++|||+|.++++.+|+++|||||+||+||||+|++|++||+|||+|++++|+|++|+|||+|+++.++|+++++.|.
T Consensus 158 ~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~cd~~p~~l~l~lr~y~YsF~~~~~~~~~r~~~~~~~ 237 (356)
T PF04724_consen 158 DRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRWCDGFPEPLHLRLRFYYYSFQFQHDGKSWRASVHTYS 237 (356)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHhcCCCCCeeEEEeeceEEEEEEecCCcchhhhhhhhc
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999888887
Q ss_pred CCcccccccccCCCCcCCceeecccCccChhHHHHHHHhccccCcCCccccCCHHHHHHHHHcCCcccCCCccchhHHHH
Q 016270 273 TGKTRYAHYRQSDDILADAGWHCSFCFRHISEFTFKMKAYSHFDRVRFSYFLNHKRIQKVICKGADLFDMLPEEYTFKEI 352 (392)
Q Consensus 273 ~~~t~~~~~R~~~~~l~~aGWHCS~Cf~~i~~i~~Km~SfSH~d~~~~~~~~d~~~I~~~I~~G~Dlfd~~~e~y~~~e~ 352 (392)
.+.++|+++|+++.++++|||||||||+++++|++||+||||+|++++++++|+++||++||+|+|||||.+|+|+|+|+
T Consensus 238 ~~~~~~~~~r~~~~il~daGWHCS~Cf~~ie~i~~Km~SfSH~e~~r~~~~~D~~~I~~~I~~G~DlfD~~~~~~~~~~~ 317 (356)
T PF04724_consen 238 QGMRRYRHSRQSDHILADAGWHCSSCFSTIEEIINKMQSFSHQERNRWPEFLDPDYIQDLIRSGKDLFDRKPEEYRFKDL 317 (356)
T ss_pred cccchhhhhcccCccccCCceeccCcCCCHHHHHHHHHhhcccccccchhhcCHHHHHHHHhcCccccCCChHhcchhhh
Confidence 77888999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCCChHHhhcccccccccCCCcccCC
Q 016270 353 IGKMGPVPHSFSAVHLPSYLLENADKYKFLLPGNCLREI 391 (392)
Q Consensus 353 ~~kl~~i~~s~~~~~~P~yll~n~~rf~yLL~~~~~r~~ 391 (392)
++||++++++.+++++|+||++|++||+|||||||+||+
T Consensus 318 ~~kl~~i~~~~~~~~~P~yll~n~~kf~~Ll~~~~~~~~ 356 (356)
T PF04724_consen 318 IKKLGPIPRSYSAYYAPEYLLENADKFKYLLPGNCYRES 356 (356)
T ss_pred hhhcccCCcccccccCCHHHHhCHHHHhhccCCCccCCC
Confidence 999999999999999999999999999999999999985
No 2
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.40 E-value=0.76 Score=42.80 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=61.2
Q ss_pred EEecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHHH
Q 016270 120 AVLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQR 199 (392)
Q Consensus 120 ~f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qR 199 (392)
+++..||-+.|+-=|+.|.+.+|.+|||.+..|- |. ..+ -+.+..++++. . |...+.+|
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~~~eiivvD~gStD-~t-~~i--------~~~~~~~v~~~--~---------~~g~~~~~ 63 (229)
T cd02511 5 VIITKNEERNIERCLESVKWAVDEIIVVDSGSTD-RT-VEI--------AKEYGAKVYQR--W---------WDGFGAQR 63 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcccCEEEEEeCCCCc-cH-HHH--------HHHcCCEEEEC--C---------CCChHHHH
Confidence 4556678888888899999999999999988662 11 111 11334555443 1 22346777
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 200 VALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 200 n~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
|..... ..+|.|++.|.||++.++.+..|.
T Consensus 64 n~~~~~------a~~d~vl~lDaD~~~~~~~~~~l~ 93 (229)
T cd02511 64 NFALEL------ATNDWVLSLDADERLTPELADEIL 93 (229)
T ss_pred HHHHHh------CCCCEEEEEeCCcCcCHHHHHHHH
Confidence 765532 247799999999999999998774
No 3
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=86.82 E-value=3.8 Score=32.91 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHhccc-ccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHHHHHHH
Q 016270 125 NELDILTIRWKELYPY-ITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQRVALD 203 (392)
Q Consensus 125 ~ElDlLEIRL~eL~dv-VD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn~l~ 203 (392)
||-++|+-=|.-.... ||.|+|+.-+.|- |. .+..+++ +++..+... .+|..+..|+....
T Consensus 2 ne~~~L~~wl~~~~~lG~d~i~i~d~~s~D-~t------~~~l~~~----~~v~i~~~~-------~~~~~~~~~~~~~~ 63 (97)
T PF13704_consen 2 NEADYLPEWLAHHLALGVDHIYIYDDGSTD-GT------REILRAL----PGVGIIRWV-------DPYRDERRQRAWRN 63 (97)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEEECCCCc-cH------HHHHHhC----CCcEEEEeC-------CCccchHHHHHHHH
Confidence 5667777666666677 9999999765442 21 1112222 334443333 13333445544444
Q ss_pred HHHHHcCCCCCcEEEeeCCCCcCCH
Q 016270 204 QLLKIAGITDDDLLIMSDVDEIPSR 228 (392)
Q Consensus 204 ~~l~~~~~~~dDliI~SDvDEIP~p 228 (392)
.++.. ....|.|++.|+||+.-+
T Consensus 64 ~~~~~--~~~~dWvl~~D~DEfl~~ 86 (97)
T PF13704_consen 64 ALIER--AFDADWVLFLDADEFLVP 86 (97)
T ss_pred HHHHh--CCCCCEEEEEeeeEEEec
Confidence 44332 357899999999997543
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.91 E-value=11 Score=36.04 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=59.9
Q ss_pred EecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHHHH
Q 016270 121 VLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQRV 200 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn 200 (392)
+.||-|++.|+-=|+.|...++..|||+.+.|-++..+.+ .+ -.++|.++..+.. .+. +..+|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~~~--------~~-~~~~i~~i~~~~N-----~G~---a~a~N 63 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQVDRIIAVDNSPHSDQPLKNA--------RL-RGQKIALIHLGDN-----QGI---AGAQN 63 (281)
T ss_pred CccCccHHHHHHHHHHHHhcCCEEEEEECcCCCcHhHHHH--------hc-cCCCeEEEECCCC-----cch---HHHHH
Confidence 3567788888888899999999999999774422111111 11 1257777765421 011 22344
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 201 ALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 201 ~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.-.+... -+..|.|++-|-|.+|.++.+..|-
T Consensus 64 ~Gi~~a~---~~~~d~i~~lD~D~~~~~~~l~~l~ 95 (281)
T TIGR01556 64 QGLDASF---RRGVQGVLLLDQDSRPGNAFLAAQW 95 (281)
T ss_pred HHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHH
Confidence 3332211 1367999999999999999998763
No 5
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=74.67 E-value=1.5 Score=24.16 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.6
Q ss_pred eeecCCCCCCCC
Q 016270 72 SYFLRPLWESPP 83 (392)
Q Consensus 72 ~~~~~p~W~~~~ 83 (392)
+|.|.|+|.|+.
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 589999999986
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=72.01 E-value=40 Score=30.57 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=59.1
Q ss_pred EecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHHHH
Q 016270 121 VLFSNELDILTIRWKELYPYITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQRV 200 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dvVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn 200 (392)
..||.|++.|+-=|..+...+..+|||..+.+= . ... ..++ -..++.++..+.. .+ -+..||
T Consensus 4 ~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~--~--~~~----~~~~--~~~~i~~i~~~~n-----~G---~~~a~N 65 (237)
T cd02526 4 VTYNPDLSKLKELLAALAEQVDKVVVVDNSSGN--D--IEL----RLRL--NSEKIELIHLGEN-----LG---IAKALN 65 (237)
T ss_pred EEecCCHHHHHHHHHHHhccCCEEEEEeCCCCc--c--HHH----Hhhc--cCCcEEEEECCCc-----ee---hHHhhh
Confidence 356667688888888888888899999865421 1 111 1111 2456666664421 11 134455
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 201 ALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 201 ~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
...+..+ | ...|.|++.|.|.++.|+.|..|
T Consensus 66 ~g~~~a~--~-~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 66 IGIKAAL--E-NGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred HHHHHHH--h-CCCCEEEEECCCCCcCHhHHHHH
Confidence 5544322 2 36899999999999999999988
No 7
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=70.21 E-value=65 Score=29.41 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=56.5
Q ss_pred EecCChHHHHHHHHHHhcc--cc-c--EEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhH
Q 016270 121 VLFSNELDILTIRWKELYP--YI-T--QFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEE 195 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~d--vV-D--~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E 195 (392)
+...||-+.|+--|+.|.. +. + .+||+. +.| .+. .-...+....+...+.+|.++.-... .++.
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD-~s~-D~t--~~~~~~~~~~~~~~~~~i~~~~~~~~-----~G~k-- 75 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLD-DST-DET--VRLAREIVEEYAAQGVNIKHVRRADR-----TGYK-- 75 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEE-CCC-CcH--HHHHHHHHHHHhhcCCceEEEECCCC-----CCCc--
Confidence 4556787888877777733 32 2 345555 333 111 11111222233333556766653321 1221
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhhhcCCCCC
Q 016270 196 AYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLRWCDDIPP 242 (392)
Q Consensus 196 ~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk~cdg~p~ 242 (392)
. .++..+++. ..+|+|++.|.|-++.|+.|..+......|+
T Consensus 76 ~---~a~n~g~~~---a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~ 116 (232)
T cd06437 76 A---GALAEGMKV---AKGEYVAIFDADFVPPPDFLQKTPPYFADPK 116 (232)
T ss_pred h---HHHHHHHHh---CCCCEEEEEcCCCCCChHHHHHhhhhhcCCC
Confidence 1 223344443 3689999999999999999988754332444
No 8
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.19 E-value=49 Score=27.61 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=52.1
Q ss_pred EecCChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHH
Q 016270 121 VLFSNELDILTIRWKELYPY---ITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAY 197 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dv---VD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~ 197 (392)
++..||.+.|+--|+.|... .+..||+....+- .. .+...++ ..++.++..+.. .+. ..
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~----~~---~~~~~~~---~~~~~~~~~~~~-----~g~---~~ 64 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTD----GS---VELLREL---FPEVRLIRNGEN-----LGF---GA 64 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCc----hH---HHHHHHh---CCCeEEEecCCC-----cCh---HH
Confidence 45567788888777777665 4566776644321 11 1111122 224555543211 011 22
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 198 QRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 198 qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.|| .+++.+ ..|.|++.|.|.++.++.+..+.
T Consensus 65 a~n---~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~ 96 (166)
T cd04186 65 GNN---QGIREA---KGDYVLLLNPDTVVEPGALLELL 96 (166)
T ss_pred Hhh---HHHhhC---CCCEEEEECCCcEECccHHHHHH
Confidence 333 333333 79999999999999999988774
No 9
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=61.51 E-value=31 Score=28.49 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=52.4
Q ss_pred EecCChHHHHHHHHHHhcc---cccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHH
Q 016270 121 VLFSNELDILTIRWKELYP---YITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAY 197 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~d---vVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~ 197 (392)
+...||.+.|+--|..|.. ..+..|||..+.| ... .+-.+++.....+|.++..+... + -..
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~--d~~-----~~~~~~~~~~~~~i~~i~~~~n~-----g---~~~ 68 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST--DET-----EEILEEYAESDPNIRYIRNPENL-----G---FSA 68 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S--SSH-----HHHHHHHHCCSTTEEEEEHCCCS-----H---HHH
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc--ccc-----ccccccccccccccccccccccc-----c---ccc
Confidence 3445666666665655554 4778888876641 121 12223333356788888766320 1 123
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 198 QRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 198 qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.+| .+++. ..+|.|++.|.|.++.+..|..|
T Consensus 69 ~~n---~~~~~---a~~~~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 69 ARN---RGIKH---AKGEYILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp HHH---HHHHH-----SSEEEEEETTEEE-TTHHHHH
T ss_pred ccc---ccccc---cceeEEEEeCCCceEcHHHHHHH
Confidence 333 34433 25669999999999999988876
No 10
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=61.40 E-value=1e+02 Score=27.79 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=47.0
Q ss_pred EEEEEecCChHHHHHHHHHHhcc----cccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChh
Q 016270 117 VYDAVLFSNELDILTIRWKELYP----YITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPF 192 (392)
Q Consensus 117 IyD~f~f~~ElDlLEIRL~eL~d----vVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w 192 (392)
|-=++...+|-+.|+-=|..|.. -++.+|+.+++. .+-.-.+.+..+++. ..+|.++..+..+ +.
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~----~~~~~~~~~~~~~~~--~~~v~vi~~~~~~-----g~ 71 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSD----DETAEILRALAARYP--RVRVRVIRRPRNP-----GP 71 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SS----S-GCTTHHHHHHTTG--G-GEEEEE----H-----HH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCC----hHHHHHHHHHHHHcC--CCceEEeecCCCC-----Cc
Confidence 33345556787777767776664 344455554321 111111111112221 2245555433110 11
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh-hhc
Q 016270 193 VEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL-RWC 237 (392)
Q Consensus 193 ~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L-k~c 237 (392)
.....++..+++.+ ..|+|++.|.|.+|.|+.|..+ +.+
T Consensus 72 ---~~k~~a~n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 72 ---GGKARALNEALAAA---RGDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp ---HHHHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHhc---CCCEEEEECCCcEECHHHHHHHHHHH
Confidence 12334455555532 4999999999999999999876 444
No 11
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=60.08 E-value=7.1 Score=30.86 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCcEEEeeCC
Q 016270 202 LDQLLKIAGITDDDLLIMSDV 222 (392)
Q Consensus 202 l~~~l~~~~~~~dDliI~SDv 222 (392)
+.+.|+++|+++||.|.++|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 345678899999999999985
No 12
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=59.80 E-value=72 Score=25.40 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=50.8
Q ss_pred EecCChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHH
Q 016270 121 VLFSNELDILTIRWKELYPY---ITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAY 197 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dv---VD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~ 197 (392)
++..+|.++|+.-|..+... ...++|+..+.+ +.... ...+......++.++...... .-..
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~--------g~~~ 67 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST------DGTLE-ILEEYAKKDPRVIRVINEENQ--------GLAA 67 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC------ccHHH-HHHHHHhcCCCeEEEEecCCC--------ChHH
Confidence 34556778888888777666 456777765432 11111 111111112334444433211 1123
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 198 QRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 198 qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.+|...+. + .+|.+++-|.|.++.++.+..+
T Consensus 68 ~~~~~~~~---~---~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 68 ARNAGLKA---A---RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHH---h---cCCEEEEECCCCccCccHHHHH
Confidence 33333322 2 6999999999999999998876
No 13
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=59.42 E-value=1.3e+02 Score=26.85 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=60.0
Q ss_pred EecCChHHHHHHHHHHhcccc--cEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHH
Q 016270 121 VLFSNELDILTIRWKELYPYI--TQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQ 198 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dvV--D~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~q 198 (392)
+...||-+.|+-=|+.|...- ...|||..+.| ....... + +....+++.++...... .+. + -...
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~~-----~-~~~~~~~v~~i~~~~~~-~~~-G---k~~a 69 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGIV-----R-LAITDSRVHLLRRHLPN-ART-G---KGDA 69 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHHH-----h-heecCCcEEEEeccCCc-CCC-C---HHHH
Confidence 455677788876666665543 35666765554 1211111 1 11122455555432111 000 1 1344
Q ss_pred HHHHHHHHHH----cCCC-CCcEEEeeCCCCcCCHHHHHHhhhcCCCCCceEEEEe
Q 016270 199 RVALDQLLKI----AGIT-DDDLLIMSDVDEIPSRHTINLLRWCDDIPPVLHLRLK 249 (392)
Q Consensus 199 Rn~l~~~l~~----~~~~-~dDliI~SDvDEIP~p~~l~~Lk~cdg~p~~l~l~lr 249 (392)
+|+..+..+. .|.. .+|+|++.|.|.++.|..|..+...-..|.......+
T Consensus 70 ln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~ 125 (191)
T cd06436 70 LNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSR 125 (191)
T ss_pred HHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeee
Confidence 5554443321 1222 4589999999999999999987543334544333333
No 14
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.15 E-value=94 Score=27.69 Aligned_cols=23 Identities=13% Similarity=0.032 Sum_probs=20.8
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 016270 213 DDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 213 ~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.+|+|++.|.|.+|.++.++.|.
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~ 94 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAII 94 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHH
Confidence 38999999999999999999863
No 15
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=58.05 E-value=64 Score=28.08 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=49.9
Q ss_pred ecCChHHHHHHHHHHhcccc------cEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhH
Q 016270 122 LFSNELDILTIRWKELYPYI------TQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEE 195 (392)
Q Consensus 122 ~f~~ElDlLEIRL~eL~dvV------D~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E 195 (392)
...||-+.|+--|..|...+ ...|||..+.|-. . .+....+..-.++|.++..... .+.
T Consensus 4 p~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~--t-----~~~~~~~~~~~~~i~~i~~~~n-----~G~--- 68 (181)
T cd04187 4 PVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDR--T-----LEILRELAARDPRVKVIRLSRN-----FGQ--- 68 (181)
T ss_pred eecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCcc--H-----HHHHHHHHhhCCCEEEEEecCC-----CCc---
Confidence 44555566655555554433 3677777554321 1 1112223222346666554311 011
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 196 AYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 196 ~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
-+++..+++. ..+|.|++.|.|..+.++.|..+-
T Consensus 69 ---~~a~n~g~~~---a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 69 ---QAALLAGLDH---ARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred ---HHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHH
Confidence 1233334443 257999999999999999988774
No 16
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=54.65 E-value=1.3e+02 Score=27.63 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=53.2
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhccc--cc---EEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCC
Q 016270 113 YPRRVYDAVLFSNELDILTIRWKELYPY--IT---QFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKK 187 (392)
Q Consensus 113 ~pRkIyD~f~f~~ElDlLEIRL~eL~dv--VD---~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~ 187 (392)
.+.+|-=++...||-+.|+--|+.+... .+ .+|||..+.+ .... +....+... .+.++..+.. .
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~----d~t~---~~~~~~~~~--~v~~i~~~~~--~ 95 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST----DGTA---EIAREYADK--GVKLLRFPER--R 95 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC----ccHH---HHHHHHhhC--cEEEEEcCCC--C
Confidence 3445555666677778888777776443 22 4555553322 1111 111223221 3544443311 0
Q ss_pred CCChhhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 188 GENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 188 ~~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
+ -...+| .+++.+ .+|+|++.|.|.+|.++.+..|
T Consensus 96 g------~~~a~n---~gi~~a---~~d~i~~lD~D~~~~~~~l~~l 130 (251)
T cd06439 96 G------KAAALN---RALALA---TGEIVVFTDANALLDPDALRLL 130 (251)
T ss_pred C------hHHHHH---HHHHHc---CCCEEEEEccccCcCHHHHHHH
Confidence 1 122333 333322 3699999999999999999876
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=54.03 E-value=83 Score=28.26 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 016270 213 DDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 213 ~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.+|.|++.|.|.++.|+.|..|-
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~ 106 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTL 106 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHH
Confidence 69999999999999999999874
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=53.97 E-value=1.1e+02 Score=27.90 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 201 ALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 201 ~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
++..+++.+. ...|+|++.|.|.++.|+.|..+.
T Consensus 73 a~n~g~~~a~-~~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 73 ALNYALERTA-PDAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred HHHHHHHhcC-CCCCEEEEEcCCCCcCHHHHHHHH
Confidence 3444444332 237999999999999999999873
No 19
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=53.42 E-value=78 Score=28.29 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=51.2
Q ss_pred EecCChHHHHHHHHHHhccc----ccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHH
Q 016270 121 VLFSNELDILTIRWKELYPY----ITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEA 196 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dv----VD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~ 196 (392)
+...||-+.|+-=|+.|... ...+|||....|- +. .- ..+.+..-.+.|..+..... .+. +
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d-~t--~~----~~~~~~~~~~~i~~~~~~~n-----~G~---~ 67 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPD-GT--AE----IVRELAKEYPRVRLIVRPGK-----RGL---G 67 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCC-Ch--HH----HHHHHHHhCCceEEEecCCC-----CCh---H
Confidence 44567777777767776653 4578888755432 11 11 11122221233433332211 011 1
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 197 YQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 197 ~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.++..+++. ..+|.|++-|.|.++.|+.+..+
T Consensus 68 ---~a~n~g~~~---a~gd~i~~lD~D~~~~~~~l~~l 99 (224)
T cd06442 68 ---SAYIEGFKA---ARGDVIVVMDADLSHPPEYIPEL 99 (224)
T ss_pred ---HHHHHHHHH---cCCCEEEEEECCCCCCHHHHHHH
Confidence 234444443 24699999999999999999766
No 20
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=52.10 E-value=1.3e+02 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=25.3
Q ss_pred CCcEEEeeCCCCcCCHHHHHHh-hhcCCCCCce
Q 016270 213 DDDLLIMSDVDEIPSRHTINLL-RWCDDIPPVL 244 (392)
Q Consensus 213 ~dDliI~SDvDEIP~p~~l~~L-k~cdg~p~~l 244 (392)
.+|.|++.|.|.++.++.+..+ +.....+...
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~ 110 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVG 110 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCee
Confidence 7999999999999999999988 5444344433
No 21
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=49.62 E-value=12 Score=29.61 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=14.7
Q ss_pred HHHHHHHcCCCCCcEEEeeCC
Q 016270 202 LDQLLKIAGITDDDLLIMSDV 222 (392)
Q Consensus 202 l~~~l~~~~~~~dDliI~SDv 222 (392)
+.+.|+++|+++||.|.++|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 345788899999999999985
No 22
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=48.45 E-value=89 Score=27.88 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 199 RVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 199 Rn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.+++..+++. ..+|+|++.|.|.++.|+.|..+-
T Consensus 75 ~~~~n~g~~~---a~~d~i~~~D~D~~~~~~~l~~l~ 108 (196)
T cd02520 75 VNNLIKGYEE---ARYDILVISDSDISVPPDYLRRMV 108 (196)
T ss_pred HHHHHHHHHh---CCCCEEEEECCCceEChhHHHHHH
Confidence 3445555543 358999999999999999998774
No 23
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=44.95 E-value=1.2e+02 Score=32.81 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=20.2
Q ss_pred CcEEEeeCCCCcCCHHHHHHhh
Q 016270 214 DDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 214 dDliI~SDvDEIP~p~~l~~Lk 235 (392)
-|+|++.|+|-+|.|++|+.+.
T Consensus 159 ~d~vvi~DAD~~v~Pd~Lr~~~ 180 (504)
T PRK14716 159 FAIIVLHDAEDVIHPLELRLYN 180 (504)
T ss_pred cCEEEEEcCCCCcCccHHHHHH
Confidence 3999999999999999999874
No 24
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=44.25 E-value=1.5e+02 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhhh
Q 016270 213 DDDLLIMSDVDEIPSRHTINLLRW 236 (392)
Q Consensus 213 ~dDliI~SDvDEIP~p~~l~~Lk~ 236 (392)
.+|.|++.|.|.++.|+.|..|-.
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 459999999999999999997743
No 25
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=43.09 E-value=37 Score=30.78 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh-hhcCCCCCc
Q 016270 199 RVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL-RWCDDIPPV 243 (392)
Q Consensus 199 Rn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L-k~cdg~p~~ 243 (392)
.+++..+++.+ .+|+|++.|.|.+|.++.|..+ +.++ .|..
T Consensus 66 ~~a~n~g~~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v 107 (235)
T cd06434 66 RRALAEGIRHV---TTDIVVLLDSDTVWPPNALPEMLKPFE-DPKV 107 (235)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCceeChhHHHHHHHhcc-CCCE
Confidence 44555565543 6899999999999999999877 4444 4443
No 26
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=43.02 E-value=1.3e+02 Score=33.88 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 200 VALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 200 n~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
..+...++..| ...|.|++.|+|.+|.+++|..+
T Consensus 208 GNl~~~~~~~~-~~~eyivvLDADs~m~~d~L~~l 241 (691)
T PRK05454 208 GNIADFCRRWG-GAYDYMVVLDADSLMSGDTLVRL 241 (691)
T ss_pred HHHHHHHHhcC-CCcCEEEEEcCCCCCCHHHHHHH
Confidence 34444555333 36799999999999999999877
No 27
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.39 E-value=2.4e+02 Score=24.83 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHHHHH
Q 016270 125 NELDILTIRWKELYPY---ITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQRVA 201 (392)
Q Consensus 125 ~ElDlLEIRL~eL~dv---VD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn~ 201 (392)
||-+.|+-=|..|... -+..||++.+.|-. .. +-..++..- .+|.++..+.. . + .+..+|.
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~--t~-----~~~~~~~~~-~~i~~~~~~~n-~-g------~~~~~n~ 70 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDG--TA-----EWLTSLGDL-DNIVYLRLPEN-L-G------GAGGFYE 70 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcc--hH-----HHHHHhcCC-CceEEEECccc-c-c------hhhHHHH
Confidence 4446666666666543 34788888765421 11 111222211 12555544311 0 0 1233444
Q ss_pred HHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 202 LDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 202 l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
..+... ...+|.|++-|.|.++.|+.+..|-
T Consensus 71 ~~~~a~---~~~~d~v~~ld~D~~~~~~~l~~l~ 101 (202)
T cd04185 71 GVRRAY---ELGYDWIWLMDDDAIPDPDALEKLL 101 (202)
T ss_pred HHHHHh---ccCCCEEEEeCCCCCcChHHHHHHH
Confidence 333211 2468999999999999999999874
No 28
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.79 E-value=34 Score=34.46 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh-hhcC
Q 016270 199 RVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL-RWCD 238 (392)
Q Consensus 199 Rn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L-k~cd 238 (392)
.+++..++.. ..+|+|++.|+|-+|.|+.|..+ +..+
T Consensus 126 ~~al~~~l~~---~~~d~V~~~DaD~~~~~d~l~~~~~~f~ 163 (439)
T COG1215 126 AGALNNGLKR---AKGDVVVILDADTVPEPDALRELVSPFE 163 (439)
T ss_pred hHHHHHHHhh---cCCCEEEEEcCCCCCChhHHHHHHhhhc
Confidence 4566666653 34999999999999999999977 4444
No 29
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=40.89 E-value=80 Score=32.81 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=21.0
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHh
Q 016270 212 TDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 212 ~~dDliI~SDvDEIP~p~~l~~L 234 (392)
..+|+|++-|.|.+|.|+++..+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHH
Confidence 46899999999999999999876
No 30
>PRK11204 N-glycosyltransferase; Provisional
Probab=38.89 E-value=2e+02 Score=29.20 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh-hhc
Q 016270 200 VALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL-RWC 237 (392)
Q Consensus 200 n~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L-k~c 237 (392)
.++..+++. ..+|.|++-|.|.+|.|+.|..+ +..
T Consensus 124 ~aln~g~~~---a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 124 NALNTGAAA---ARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred HHHHHHHHH---cCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 344445443 36899999999999999999877 444
No 31
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=38.56 E-value=2.8e+02 Score=28.16 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=57.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhcc--cc--cEEEEEEeCCCccCCCccccchhhhhhcc-cCC--CCEEEEEeCCccCCC
Q 016270 116 RVYDAVLFSNELDILTIRWKELYP--YI--TQFVLLESNSTFTGKPKPLVFSAHRDQFK-FVD--PRLTYGTIGGRFKKG 188 (392)
Q Consensus 116 kIyD~f~f~~ElDlLEIRL~eL~d--vV--D~FVIvES~~TftG~pKpL~f~~~~~rF~-~~~--~KIiy~~l~~~~~~~ 188 (392)
+|-=.+...||-+.|+-=|+.|.. +- -..|||..+.|- ... +..+++. .+. +++..+..+..+
T Consensus 41 ~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD--~T~-----~i~~~~~~~~~~~~~i~vi~~~~~~--- 110 (384)
T TIGR03469 41 AVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTD--GTA-----DIARAAARAYGRGDRLTVVSGQPLP--- 110 (384)
T ss_pred CEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCC--cHH-----HHHHHHHHhcCCCCcEEEecCCCCC---
Confidence 344445566888888888877743 32 366777755431 111 1112221 111 356555432211
Q ss_pred CChhhhHHHHHHHHHHHHHHcCC--CCCcEEEeeCCCCcCCHHHHHHh
Q 016270 189 ENPFVEEAYQRVALDQLLKIAGI--TDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 189 ~~~w~~E~~qRn~l~~~l~~~~~--~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.+|.--.. ++.++++.+.. .++|+|++.|.|.++.|+.+..+
T Consensus 111 -~g~~Gk~~---A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 111 -PGWSGKLW---AVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred -CCCcchHH---HHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 23433223 33444443321 23899999999999999998877
No 32
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=37.75 E-value=2.4e+02 Score=27.32 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHhhh
Q 016270 212 TDDDLLIMSDVDEIPSRHTINLLRW 236 (392)
Q Consensus 212 ~~dDliI~SDvDEIP~p~~l~~Lk~ 236 (392)
..+|+|++-|+|=||+|+.+..+..
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 3799999999999999999997754
No 33
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=36.11 E-value=1.9e+02 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 200 VALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 200 n~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
+++.++++. ..+|+|++.|.|-+|.|+.|+.+-
T Consensus 116 ~~l~~~~~~---a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 116 SNLINMLPH---ARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred HHHHHHHHh---ccCCEEEEECCCCCcChhHHHHHH
Confidence 445555543 369999999999999999999884
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=34.82 E-value=3.1e+02 Score=23.91 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=49.5
Q ss_pred cCChHHHHHHHHHHhccc--c-cEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHHHH
Q 016270 123 FSNELDILTIRWKELYPY--I-TQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAYQR 199 (392)
Q Consensus 123 f~~ElDlLEIRL~eL~dv--V-D~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qR 199 (392)
++.|++.|+-=|+.|... . ...|||..+.+-... + +-.+.+..-.+++.++..+.. .++ ...+
T Consensus 10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~-~-----~~~~~~~~~~~~~~~~~~~~~-----~g~---~~a~ 75 (202)
T cd04184 10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEV-K-----RVLKKYAAQDPRIKVVFREEN-----GGI---SAAT 75 (202)
T ss_pred ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHH-H-----HHHHHHHhcCCCEEEEEcccC-----CCH---HHHH
Confidence 344447777666666442 2 256777765432111 1 111112222345665543311 112 2234
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 200 VALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 200 n~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
|. +++. ..+|.|++.|.|.++.|+.+..+.
T Consensus 76 n~---g~~~---a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 76 NS---ALEL---ATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred HH---HHHh---hcCCEEEEECCCCcCChHHHHHHH
Confidence 43 3332 257999999999999999988763
No 35
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=34.12 E-value=3.1e+02 Score=27.39 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=54.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhccc------ccEEEEEEeCCCccCCCccccchhhhhhc-ccCCCCEEEEEeCCccCCC
Q 016270 116 RVYDAVLFSNELDILTIRWKELYPY------ITQFVLLESNSTFTGKPKPLVFSAHRDQF-KFVDPRLTYGTIGGRFKKG 188 (392)
Q Consensus 116 kIyD~f~f~~ElDlLEIRL~eL~dv------VD~FVIvES~~TftG~pKpL~f~~~~~rF-~~~~~KIiy~~l~~~~~~~ 188 (392)
+|-=++...||-+-|+--+++|... -..+|||..+.|- +. . +-..+. +...++++.+.....
T Consensus 7 ~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D-~T-~-----~il~~~~~~~~~~v~~i~~~~n---- 75 (325)
T PRK10714 7 KVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSD-NS-A-----EMLVEAAQAPDSHIVAILLNRN---- 75 (325)
T ss_pred eEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCC-cH-H-----HHHHHHHhhcCCcEEEEEeCCC----
Confidence 3444566678877666555555332 2367777755432 11 1 111122 123456666554421
Q ss_pred CChhhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 189 ENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 189 ~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.- +-.|+..+++.+ .+|.|++-|.|....|+.+..|
T Consensus 76 ---~G----~~~A~~~G~~~A---~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 76 ---YG----QHSAIMAGFSHV---TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred ---CC----HHHHHHHHHHhC---CCCEEEEECCCCCCCHHHHHHH
Confidence 00 112455555433 6899999999999999888765
No 36
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=33.71 E-value=1.5e+02 Score=27.71 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHh-hhcCCCCCc
Q 016270 212 TDDDLLIMSDVDEIPSRHTINLL-RWCDDIPPV 243 (392)
Q Consensus 212 ~~dDliI~SDvDEIP~p~~l~~L-k~cdg~p~~ 243 (392)
..+|+|++.|.|-++.|..|..+ +..+..|..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~v 104 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEI 104 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCE
Confidence 57999999999999999998866 444334554
No 37
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=32.46 E-value=72 Score=28.08 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 212 TDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 212 ~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
..+|+|++.|.|-+|.|+.|..+.
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHH
Confidence 469999999999999999998773
No 38
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=28.11 E-value=83 Score=28.62 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 201 ALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 201 ~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.|.+++.. -...|+|+++|.|-.++|+.|..|-
T Consensus 21 nL~~~~~~--~a~~d~~~~~DsDi~v~p~~L~~lv 53 (175)
T PF13506_consen 21 NLAQGLEA--GAKYDYLVISDSDIRVPPDYLRELV 53 (175)
T ss_pred HHHHHHHh--hCCCCEEEEECCCeeECHHHHHHHH
Confidence 34445443 2689999999999999999999884
No 39
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=28.08 E-value=4.4e+02 Score=25.26 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=52.6
Q ss_pred ecCChH-HHHHHHHHHhcccc-----cEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhH
Q 016270 122 LFSNEL-DILTIRWKELYPYI-----TQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEE 195 (392)
Q Consensus 122 ~f~~El-DlLEIRL~eL~dvV-----D~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E 195 (392)
+..||- +.|+-=|..+.... ...|||+.+.|-.-. .. ..+ .......+.|.++..+.. .++.
T Consensus 5 p~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~--~~-~~~--~~~~~~~~~v~vi~~~~n-----~G~~-- 72 (299)
T cd02510 5 IFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPEL--KL-LLE--EYYKKYLPKVKVLRLKKR-----EGLI-- 72 (299)
T ss_pred EEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHH--HH-HHH--HHHhhcCCcEEEEEcCCC-----CCHH--
Confidence 344554 77776677765432 378999866532111 11 100 011233456666654421 1121
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 196 AYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 196 ~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
..||. +++. ..+|.|++-|.|.++.+..|..|
T Consensus 73 -~a~N~---g~~~---A~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 73 -RARIA---GARA---ATGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred -HHHHH---HHHH---ccCCEEEEEeCCcccCccHHHHH
Confidence 23443 3332 36899999999999999998876
No 40
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=26.45 E-value=4.7e+02 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCcEEEeeCCCCcCCHHHHHHhh
Q 016270 213 DDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 213 ~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.+|.|++-|.|.++.|+.|+.+-
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHH
Confidence 68999999999999999998774
No 41
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.51 E-value=1.3e+02 Score=26.74 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 200 VALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 200 n~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
.++..+++.+ .+|+|++-|.|.++.|+.|+.|-
T Consensus 72 ~a~n~g~~~~---~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 72 NALTTAIKAA---KGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred HHHHHHHHHh---cCCEEEEECCCcccCHHHHHHHH
Confidence 3444444432 58999999999999999999874
No 42
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=23.92 E-value=5.2e+02 Score=23.01 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHhh
Q 016270 201 ALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLLR 235 (392)
Q Consensus 201 ~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~Lk 235 (392)
++..+++.+ .+|.|++.|.|..+.|+.+..|-
T Consensus 73 a~~~g~~~a---~gd~i~~ld~D~~~~~~~l~~l~ 104 (211)
T cd04188 73 AVRAGMLAA---RGDYILFADADLATPFEELEKLE 104 (211)
T ss_pred HHHHHHHHh---cCCEEEEEeCCCCCCHHHHHHHH
Confidence 444455433 47999999999999999998774
No 43
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=22.67 E-value=6.8e+02 Score=24.81 Aligned_cols=31 Identities=29% Similarity=0.258 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCCc-CCHHHHHHh
Q 016270 201 ALDQLLKIAGITDDDLLIMSDVDEI-PSRHTINLL 234 (392)
Q Consensus 201 ~l~~~l~~~~~~~dDliI~SDvDEI-P~p~~l~~L 234 (392)
+++.++.. ..+|+|++-|.|-+ ++|+.+..|
T Consensus 106 A~~~g~~~---a~gd~vv~lDaD~~~~~p~~l~~l 137 (306)
T PRK13915 106 ALWRSLAA---TTGDIVVFVDADLINFDPMFVPGL 137 (306)
T ss_pred HHHHHHHh---cCCCEEEEEeCccccCCHHHHHHH
Confidence 34445443 36899999999997 889877655
No 44
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=20.13 E-value=2.9e+02 Score=26.95 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHc-CCCCCcEEEeeCCCCcCCHHHHHHhhh
Q 016270 193 VEEAYQRVALDQLLKIA-GITDDDLLIMSDVDEIPSRHTINLLRW 236 (392)
Q Consensus 193 ~~E~~qRn~l~~~l~~~-~~~~dDliI~SDvDEIP~p~~l~~Lk~ 236 (392)
.+-.+|||..++-++.. ..+.+=||.++|-|-+.+-+..+.+|+
T Consensus 74 ~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~ 118 (223)
T cd00218 74 PRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRK 118 (223)
T ss_pred cccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhc
Confidence 35678999998888742 125778999999999999998888875
Done!