Query 016270
Match_columns 392
No_of_seqs 170 out of 209
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 38.3 1.5E+02 0.0051 25.6 9.0 95 123-234 9-109 (255)
2 2ffu_A Ppgalnact-2, polypeptid 32.7 1.4E+02 0.0046 29.7 8.6 95 116-234 67-167 (501)
3 3bcv_A Putative glycosyltransf 32.7 1.8E+02 0.0062 24.7 8.5 92 121-234 11-105 (240)
4 4fix_A UDP-galactofuranosyl tr 31.0 1.7E+02 0.0058 30.8 9.3 104 115-234 180-289 (657)
5 1jg7_A BGT, DNA beta-glucosylt 30.6 47 0.0016 31.6 4.4 46 139-184 57-102 (351)
6 2z86_A Chondroitin synthase; G 23.5 4.1E+02 0.014 26.7 10.5 97 117-234 95-195 (625)
7 2d7i_A Polypeptide N-acetylgal 23.4 2E+02 0.0068 29.3 8.0 98 117-234 114-217 (570)
8 1xhb_A Polypeptide N-acetylgal 22.6 2.6E+02 0.0088 27.2 8.4 99 116-234 30-135 (472)
9 2pa1_A PDZ and LIM domain prot 21.7 1.5E+02 0.005 21.9 5.1 38 208-248 41-81 (87)
10 3bpu_A Membrane-associated gua 17.7 2.1E+02 0.0073 21.0 5.2 39 209-248 41-82 (88)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=38.30 E-value=1.5e+02 Score=25.63 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=52.6
Q ss_pred cCChHHHHHHHHHHhccc--cc-EEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCC---CCChhhhHH
Q 016270 123 FSNELDILTIRWKELYPY--IT-QFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKK---GENPFVEEA 196 (392)
Q Consensus 123 f~~ElDlLEIRL~eL~dv--VD-~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~---~~~~w~~E~ 196 (392)
..|+-+.|+--|..+... .+ .+|||....|- + -.+-.++++. .++|.++..+..... ...+ -+
T Consensus 9 ~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d-~------t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G---~~ 77 (255)
T 1qg8_A 9 SYNKSDYVAKSISSILSQTFSDFELFIMDDNSNE-E------TLNVIRPFLN-DNRVRFYQSDISGVKERTEKTR---YA 77 (255)
T ss_dssp ESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCH-H------HHHHHGGGGG-STTEEEEECCCCSHHHHHSSCH---HH
T ss_pred cCCCHHHHHHHHHHHHhccCCceEEEEEECCCCc-h------HHHHHHHHhh-cCCEEEEecccccccccccccC---HH
Confidence 345446666666666432 22 56777755431 0 1122344544 677888775411000 0111 12
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 197 YQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 197 ~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
..||. +++.+ .+|.|++.|.|.++.|+.|..+
T Consensus 78 ~a~N~---gi~~a---~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 78 ALINQ---AIEMA---EGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HHHHH---HHHHC---CCSEEEEEETTEEECTTHHHHH
T ss_pred HHHHH---HHHHc---CCCEEEEeCCCCccChHHHHHH
Confidence 34444 33433 7899999999999999998866
No 2
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=32.72 E-value=1.4e+02 Score=29.66 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=54.3
Q ss_pred cEEEEEecCChHH-HHHHHHHHhcccc-----cEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCC
Q 016270 116 RVYDAVLFSNELD-ILTIRWKELYPYI-----TQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGE 189 (392)
Q Consensus 116 kIyD~f~f~~ElD-lLEIRL~eL~dvV-----D~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~ 189 (392)
+|==++.+.||-+ .|+--|+.+.... -..|||....|-. . .....++ .++|.++..+..
T Consensus 67 ~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~-t-----~~~~~~~----~~~v~vi~~~~n----- 131 (501)
T 2ffu_A 67 ATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDP-E-----DGALLGK----IEKVRVLRNDRR----- 131 (501)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCT-H-----HHHGGGG----BTTEEEEECSSC-----
T ss_pred CEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCch-H-----HHHHHhc----CCCEEEEECCCC-----
Confidence 3433455667654 7776676664422 2788888654321 1 1111111 346777765421
Q ss_pred ChhhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 190 NPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 190 ~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.+. .. ++..+++.+ .+|+|++.|.|-++.|+.|..|
T Consensus 132 ~G~---~~---A~N~G~~~A---~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 132 EGL---MR---SRVRGADAA---QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp CHH---HH---HHHHHHHHC---CSSEEEECCSSEEECTTCHHHH
T ss_pred cCH---HH---HHHHHHHhc---CCCEEEEECCCcccCccHHHHH
Confidence 111 22 233444433 5899999999999999988866
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=32.68 E-value=1.8e+02 Score=24.75 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=51.5
Q ss_pred EecCChHHHHHHHHHHhcccc--c-EEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChhhhHHH
Q 016270 121 VLFSNELDILTIRWKELYPYI--T-QFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPFVEEAY 197 (392)
Q Consensus 121 f~f~~ElDlLEIRL~eL~dvV--D-~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~ 197 (392)
+...|+-+.|+-=|..|...- + ..|||....|- + . .+..+++..-.++|.++.-+ + .+ -+.
T Consensus 11 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d-~-t-----~~~~~~~~~~~~~i~~i~~~-----n-~G---~~~ 74 (240)
T 3bcv_A 11 VPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPD-N-C-----PKICDDYAAQYPNIKVIHKK-----N-AG---LGM 74 (240)
T ss_dssp EEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSS-S-H-----HHHHHHHHHHCSSEEEEECC-----C-CC---HHH
T ss_pred EecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCc-C-H-----HHHHHHHHhhCCCEEEEECC-----C-CC---hHH
Confidence 344455577776677664432 2 56777755431 1 1 11223332223466666421 1 11 134
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 198 QRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 198 qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.||.. ++.+ .+|.|++-|.|.++.|+.|..|
T Consensus 75 a~N~g---~~~a---~g~~i~~lD~Dd~~~~~~l~~l 105 (240)
T 3bcv_A 75 ACNSG---LDVA---TGEYVAFCDSDDYVDSDMYMTM 105 (240)
T ss_dssp HHHHH---HHHC---CSSEEEECCTTCCCCTTHHHHH
T ss_pred HHHHH---HHHc---CCCEEEEECCCCcCCHHHHHHH
Confidence 45543 4433 6899999999999999999876
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=30.97 E-value=1.7e+02 Score=30.84 Aligned_cols=104 Identities=13% Similarity=-0.036 Sum_probs=63.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhcc------cccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCC
Q 016270 115 RRVYDAVLFSNELDILTIRWKELYP------YITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKG 188 (392)
Q Consensus 115 RkIyD~f~f~~ElDlLEIRL~eL~d------vVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~ 188 (392)
.+|-=+++-.|+-+.|+--|..|.. .++..|||....|-... . ..+.+..+ ...++|.++..+.
T Consensus 180 pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~-~-~~~~e~~~---~~~~~I~vI~~~N----- 249 (657)
T 4fix_A 180 ANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRD-H-PDFPAAAA---RLGSRLSIHDQPN----- 249 (657)
T ss_dssp CCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGG-S-TTHHHHHH---HHGGGEEEEECCC-----
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccc-h-HHHHHHHH---hcCCCEEEEECCC-----
Confidence 4554445556788888888888876 56689999977653111 1 11222111 1235787776431
Q ss_pred CChhhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 189 ENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 189 ~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.++ +..+|.-.+..... ...|.|++.|.|.++.|+.|..|
T Consensus 250 -~G~---a~a~N~Gl~~A~g~--~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 250 -LGG---SGGYSRVMYEALKN--TDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp -CHH---HHHHHHHHHHHHHH--CCCSEEEEECSSEEECTHHHHHH
T ss_pred -CCH---HHHHHHHHHHHHhc--CCCCEEEEECCCCccChhHHHHH
Confidence 122 33455544332211 25799999999999999999876
No 5
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=30.58 E-value=47 Score=31.56 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=33.9
Q ss_pred ccccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCc
Q 016270 139 PYITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGR 184 (392)
Q Consensus 139 dvVD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~ 184 (392)
.+-|..++|-|...|.|..-.+.......=.++|++||-|..-+.+
T Consensus 57 n~ydr~~vvn~s~nf~gg~~n~~~~~a~~f~~kykskiyylftdir 102 (351)
T 1jg7_A 57 NDYDRLIVVNSSINFFGGKPNLAILSAQKFMAKYKSKIYYLFTDIR 102 (351)
T ss_dssp GGCSEEEEECCCCCCCTTSCCHHHHHHHHHHHHCCSCEEEEECCTT
T ss_pred cccceEEEEeceeeccCCCccHHHHHHHHHHHHhhceeEEEEeecc
Confidence 3568999999999999987666543322223899999999886653
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=23.50 E-value=4.1e+02 Score=26.73 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=57.1
Q ss_pred EEEEEecCChHHHHHHHHHHhccc----ccEEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCChh
Q 016270 117 VYDAVLFSNELDILTIRWKELYPY----ITQFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGENPF 192 (392)
Q Consensus 117 IyD~f~f~~ElDlLEIRL~eL~dv----VD~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~~w 192 (392)
|-=++...||-+.|+-=|..|... -...|||..+.|- + ..+..+++.. ...|.++..+... .
T Consensus 95 vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d-----~--t~~~~~~~~~-~~~i~~i~~~~~~------~ 160 (625)
T 2z86_A 95 LSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKE-----N--IEEIVREFES-LLNIKYVRQKDYG------Y 160 (625)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSS-----C--HHHHHHTTTT-TSCEEEEEECCCS------C
T ss_pred EEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCch-----h--HHHHHHHhhh-cCCeEEEEeCCCC------c
Confidence 433455567778888778877544 4567788765431 1 1222233322 2467777644211 0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 193 VEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 193 ~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.-+..||. +++.+ .+|+|++.|.|.++.|+.|..+
T Consensus 161 -g~~~a~N~---g~~~a---~g~~v~~lD~D~~~~~~~l~~~ 195 (625)
T 2z86_A 161 -QLCAVRNL---GLRAA---KYNYVAILDCDMAPNPLWVQSY 195 (625)
T ss_dssp -CHHHHHHH---HHHHC---CSSEEEEECTTEEECTTHHHHH
T ss_pred -chhHHHHH---HHHhC---CcCEEEEECCCCCCCHHHHHHH
Confidence 01233443 33433 6899999999999999998866
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=23.39 E-value=2e+02 Score=29.32 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=55.7
Q ss_pred EEEEEecCCh-HHHHHHHHHHhccc--cc---EEEEEEeCCCccCCCccccchhhhhhcccCCCCEEEEEeCCccCCCCC
Q 016270 117 VYDAVLFSNE-LDILTIRWKELYPY--IT---QFVLLESNSTFTGKPKPLVFSAHRDQFKFVDPRLTYGTIGGRFKKGEN 190 (392)
Q Consensus 117 IyD~f~f~~E-lDlLEIRL~eL~dv--VD---~FVIvES~~TftG~pKpL~f~~~~~rF~~~~~KIiy~~l~~~~~~~~~ 190 (392)
|==++.+.|| ++.|+--|+.+... .+ ..|||....|- + .+.+..+++..-.++|.++..+.. .
T Consensus 114 vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D-----~-tl~~~l~~~~~~~~~v~vi~~~~n-----~ 182 (570)
T 2d7i_A 114 TSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR-----E-HLKKPLEDYMALFPSVRILRTKKR-----E 182 (570)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC-----G-GGTHHHHHHHTTSTTEEEEECSSC-----C
T ss_pred eEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc-----H-HHHHHHHHHHHhCCeEEEEECCCC-----C
Confidence 3334555666 58887777766432 22 78888865432 1 112223333222267888775421 1
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 191 PFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 191 ~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
+. ...|| .+++.+ .+|+|++.|.|.++.|..|..|
T Consensus 183 G~---~~A~N---~G~~~A---~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 183 GL---IRTRM---LGASVA---TGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp CH---HHHHH---HHHHHC---CSSEEEECCSSEEECTTCSHHH
T ss_pred CH---HHHHH---HHHHhc---CCCEEEEEcCCccccccHHHHH
Confidence 11 22333 344433 5899999999999999877755
No 8
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=22.62 E-value=2.6e+02 Score=27.20 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=57.1
Q ss_pred cEEEEEecCChH-HHHHHHHHHhcccc-----cEEEEEEeCCCccCCCccccchhhhhhc-ccCCCCEEEEEeCCccCCC
Q 016270 116 RVYDAVLFSNEL-DILTIRWKELYPYI-----TQFVLLESNSTFTGKPKPLVFSAHRDQF-KFVDPRLTYGTIGGRFKKG 188 (392)
Q Consensus 116 kIyD~f~f~~El-DlLEIRL~eL~dvV-----D~FVIvES~~TftG~pKpL~f~~~~~rF-~~~~~KIiy~~l~~~~~~~ 188 (392)
+|==++.+.||- +.|+-=|+.|.... ...|||....|-. .. .+..+++ +.+..+|.++..+..
T Consensus 30 ~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~-~t-----~~~l~~~~~~~~~~v~vi~~~~n---- 99 (472)
T 1xhb_A 30 TTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERD-FL-----KRPLESYVKKLKVPVHVIRMEQR---- 99 (472)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCG-GG-----THHHHHHHHSSSSCEEEEECSSC----
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcH-HH-----HHHHHHHHHHCCCcEEEEECCCC----
Confidence 444445566765 77776666665432 3788888654421 01 1122333 223337888776521
Q ss_pred CChhhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCCcCCHHHHHHh
Q 016270 189 ENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSRHTINLL 234 (392)
Q Consensus 189 ~~~w~~E~~qRn~l~~~l~~~~~~~dDliI~SDvDEIP~p~~l~~L 234 (392)
.+. ...|| .+++.+ .+|+|++.|.|-++.|+.|..|
T Consensus 100 -~G~---~~a~N---~g~~~A---~gd~i~flD~D~~~~p~~L~~l 135 (472)
T 1xhb_A 100 -SGL---IRARL---KGAAVS---RGQVITFLDAHCECTAGWLEPL 135 (472)
T ss_dssp -CCH---HHHHH---HHHHHC---CSSEEEEEESSEEECTTCHHHH
T ss_pred -CCh---HHHHH---HHHHhc---cCCeEEEECCCeEeCccHHHHH
Confidence 111 22333 344433 5899999999999999988866
No 9
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=21.69 E-value=1.5e+02 Score=21.87 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.9
Q ss_pred HcCCCCCcEEEeeCCCCcCC---HHHHHHhhhcCCCCCceEEEE
Q 016270 208 IAGITDDDLLIMSDVDEIPS---RHTINLLRWCDDIPPVLHLRL 248 (392)
Q Consensus 208 ~~~~~~dDliI~SDvDEIP~---p~~l~~Lk~cdg~p~~l~l~l 248 (392)
.+|++++|+|+--|--.|-+ .+..+.|+... .++.+..
T Consensus 41 ~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~---~~v~l~v 81 (87)
T 2pa1_A 41 DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP---SPLRLQL 81 (87)
T ss_dssp HTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC---SSEEEEE
T ss_pred HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC---CeEEEEE
Confidence 37999999999988777777 66777777543 4555544
No 10
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=17.70 E-value=2.1e+02 Score=20.99 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=27.0
Q ss_pred cCCCCCcEEEeeCCCCcCC---HHHHHHhhhcCCCCCceEEEE
Q 016270 209 AGITDDDLLIMSDVDEIPS---RHTINLLRWCDDIPPVLHLRL 248 (392)
Q Consensus 209 ~~~~~dDliI~SDvDEIP~---p~~l~~Lk~cdg~p~~l~l~l 248 (392)
+|++++|+|+--|--.|-+ .+.++.|+... -..++.+..
T Consensus 41 aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~g~~v~l~v 82 (88)
T 3bpu_A 41 RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESP-KGSEVTLLV 82 (88)
T ss_dssp TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSC-TTCEEEEEE
T ss_pred hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCCEEEEEE
Confidence 4899999999988888877 46677777532 223555543
Done!