Query 016271
Match_columns 392
No_of_seqs 150 out of 1755
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 3.4E-52 7.3E-57 427.9 35.6 345 1-357 255-615 (617)
2 TIGR00956 3a01205 Pleiotropic 100.0 4E-52 8.6E-57 457.3 33.1 350 1-356 299-695 (1394)
3 PLN03140 ABC transporter G fam 100.0 6.1E-52 1.3E-56 454.5 34.1 342 1-358 1113-1469(1470)
4 PLN03211 ABC transporter G-25; 100.0 5.6E-50 1.2E-54 411.6 32.9 341 1-355 295-658 (659)
5 TIGR00956 3a01205 Pleiotropic 100.0 6.2E-50 1.4E-54 440.0 33.0 338 1-356 996-1391(1394)
6 PLN03140 ABC transporter G fam 100.0 2.7E-49 5.8E-54 433.7 34.5 351 1-355 426-789 (1470)
7 KOG0061 Transporter, ABC super 100.0 1.4E-47 3E-52 390.1 31.5 344 1-358 259-611 (613)
8 KOG0065 Pleiotropic drug resis 100.0 2.4E-47 5.2E-52 396.1 23.8 342 1-358 1024-1386(1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.1E-45 2.5E-50 383.7 26.4 351 1-355 350-730 (1391)
10 PF01061 ABC2_membrane: ABC-2 99.9 2.1E-24 4.5E-29 192.6 0.4 208 90-302 1-210 (210)
11 TIGR01291 nodJ ABC-2 type tran 99.8 2.2E-16 4.8E-21 145.4 23.0 239 91-355 6-251 (253)
12 TIGR01247 drrB daunorubicin re 99.7 5E-16 1.1E-20 141.7 20.8 227 98-349 1-234 (236)
13 TIGR03861 phenyl_ABC_PedC alco 99.7 4.8E-15 1E-19 136.6 23.8 235 90-352 2-249 (253)
14 TIGR00025 Mtu_efflux ABC trans 99.7 2.8E-15 6.1E-20 136.4 21.3 222 104-352 2-229 (232)
15 PRK15066 inner membrane transp 99.6 1E-13 2.2E-18 128.0 24.8 244 88-358 6-256 (257)
16 TIGR03062 pip_yhgE_Cterm YhgE/ 99.6 4.1E-14 8.8E-19 126.5 13.5 151 179-355 57-207 (208)
17 TIGR01248 drrC daunorubicin re 99.3 6.4E-11 1.4E-15 100.3 11.9 132 163-299 14-147 (152)
18 COG0842 ABC-type multidrug tra 99.2 1.1E-09 2.4E-14 101.8 20.4 169 165-356 115-284 (286)
19 TIGR03518 ABC_perm_GldF glidin 98.9 3.8E-07 8.1E-12 83.2 21.9 218 93-352 2-238 (240)
20 COG1682 TagG ABC-type polysacc 98.9 4.7E-07 1E-11 83.2 22.4 236 89-355 17-256 (263)
21 PF12679 ABC2_membrane_2: ABC- 98.7 5.8E-06 1.3E-10 76.9 21.1 167 169-354 89-275 (277)
22 PRK15176 Vi polysaccharide exp 98.6 1E-05 2.2E-10 74.7 21.1 233 90-355 19-260 (264)
23 PF12698 ABC2_membrane_3: ABC- 98.4 4.8E-08 1E-12 93.0 0.0 158 162-348 181-343 (344)
24 PF03379 CcmB: CcmB protein; 98.2 0.00011 2.5E-09 65.7 16.6 157 92-262 1-166 (215)
25 PF06422 PDR_CDR: CDR ABC tran 98.0 1.4E-05 3.1E-10 62.5 5.8 49 311-360 31-79 (103)
26 COG1277 NosY ABC-type transpor 97.9 0.0019 4E-08 60.2 18.6 242 90-355 2-276 (278)
27 TIGR01190 ccmB heme exporter p 97.7 0.0028 6.1E-08 56.2 16.5 140 95-248 1-149 (211)
28 PF12051 DUF3533: Protein of u 97.5 0.0035 7.6E-08 61.3 15.6 137 180-343 240-380 (382)
29 TIGR03733 lanti_perm_MutG lant 97.5 0.078 1.7E-06 48.6 23.2 76 172-247 78-158 (248)
30 COG4587 ABC-type uncharacteriz 97.4 0.038 8.3E-07 49.4 19.0 238 87-353 3-258 (268)
31 COG1511 Predicted membrane pro 97.0 0.0099 2.1E-07 63.5 13.4 160 174-359 610-770 (780)
32 COG2386 CcmB ABC-type transpor 97.0 0.042 9.2E-07 47.8 14.3 146 90-249 2-156 (221)
33 PF08370 PDR_assoc: Plant PDR 96.8 0.0022 4.7E-08 45.2 4.4 45 311-356 11-56 (65)
34 PF06182 ABC2_membrane_6: ABC- 95.9 1.2 2.7E-05 40.0 18.6 125 170-298 54-187 (229)
35 PF12730 ABC2_membrane_4: ABC- 95.8 0.94 2E-05 39.7 16.9 84 169-253 69-168 (232)
36 TIGR01257 rim_protein retinal- 95.7 0.54 1.2E-05 55.4 18.3 136 158-297 669-807 (2272)
37 COG3559 TnrB3 Putative exporte 94.9 2.5 5.5E-05 41.1 16.7 211 109-355 299-533 (536)
38 TIGR03732 lanti_perm_MutE lant 94.8 2.8 6.1E-05 38.1 16.9 67 179-245 80-150 (241)
39 TIGR01257 rim_protein retinal- 92.8 1.2 2.6E-05 52.6 12.5 94 161-256 1699-1796(2272)
40 COG4200 Uncharacterized protei 90.5 12 0.00027 33.4 22.5 110 171-291 76-198 (239)
41 COG1668 NatB ABC-type Na+ effl 87.8 14 0.00029 36.6 13.5 78 179-256 227-316 (407)
42 PF09847 DUF2074: Predicted pe 87.0 22 0.00047 35.7 14.5 107 83-197 241-347 (449)
43 PF13829 DUF4191: Domain of un 67.6 90 0.0019 28.0 10.6 48 82-129 3-50 (224)
44 KOG0059 Lipid exporter ABCA1 a 67.2 42 0.00092 36.8 10.4 96 161-259 317-414 (885)
45 PF10766 DUF2592: Protein of u 64.8 13 0.00029 23.1 3.4 21 108-128 4-24 (41)
46 PF12273 RCR: Chitin synthesis 64.6 7 0.00015 31.8 3.0 17 330-346 2-18 (130)
47 TIGR03061 pip_yhgE_Nterm YhgE/ 60.3 10 0.00022 32.1 3.4 33 98-130 1-36 (164)
48 PF01102 Glycophorin_A: Glycop 58.3 15 0.00034 29.5 3.8 22 329-350 67-88 (122)
49 PRK11026 ftsX cell division AB 58.1 28 0.00061 32.9 6.3 47 82-128 3-49 (309)
50 PF13346 ABC2_membrane_5: ABC- 54.5 1.4E+02 0.003 25.6 15.6 42 166-207 60-101 (206)
51 PF11446 DUF2897: Protein of u 46.4 30 0.00065 23.6 3.2 21 338-358 10-30 (55)
52 TIGR01477 RIFIN variant surfac 44.2 27 0.00058 33.4 3.6 29 329-358 312-340 (353)
53 PTZ00046 rifin; Provisional 43.7 27 0.00059 33.5 3.6 29 329-358 317-345 (358)
54 PF04277 OAD_gamma: Oxaloaceta 43.4 60 0.0013 23.5 4.8 15 336-350 9-23 (79)
55 COG4393 Predicted membrane pro 43.1 2.7E+02 0.0058 26.6 9.7 17 234-250 41-57 (405)
56 COG4325 Predicted membrane pro 41.1 3.5E+02 0.0076 26.5 10.4 80 164-257 114-197 (464)
57 PF11044 TMEMspv1-c74-12: Plec 39.7 28 0.0006 22.3 2.0 31 335-365 7-37 (49)
58 TIGR00439 ftsX putative protei 38.7 67 0.0014 30.4 5.5 44 84-127 5-48 (309)
59 PF12273 RCR: Chitin synthesis 38.3 28 0.0006 28.3 2.5 19 336-354 4-23 (130)
60 TIGR01195 oadG_fam sodium pump 37.6 86 0.0019 23.2 4.8 16 335-350 11-26 (82)
61 PF02009 Rifin_STEVOR: Rifin/s 34.0 46 0.00099 31.3 3.5 29 329-358 258-286 (299)
62 PF04123 DUF373: Domain of unk 33.0 4.5E+02 0.0099 25.3 15.4 42 85-127 134-175 (344)
63 PF12911 OppC_N: N-terminal TM 32.9 1.5E+02 0.0032 19.7 5.9 36 96-131 5-41 (56)
64 KOG0476 Cl- channel CLC-2 and 30.5 2.8E+02 0.0062 29.6 8.6 37 89-128 74-110 (931)
65 TIGR01478 STEVOR variant surfa 30.1 68 0.0015 29.7 3.8 33 329-364 261-293 (295)
66 PTZ00370 STEVOR; Provisional 26.9 77 0.0017 29.4 3.6 33 329-364 257-289 (296)
67 PF05545 FixQ: Cbb3-type cytoc 26.8 95 0.002 20.3 3.2 24 332-355 11-34 (49)
68 PF08374 Protocadherin: Protoc 26.6 43 0.00092 29.6 1.8 41 329-369 37-77 (221)
69 PF05393 Hum_adeno_E3A: Human 24.3 1.6E+02 0.0034 22.1 4.1 26 331-356 35-60 (94)
70 PF12725 DUF3810: Protein of u 21.8 4.4E+02 0.0096 25.0 7.9 26 175-200 3-28 (318)
71 PF01102 Glycophorin_A: Glycop 20.2 1.6E+02 0.0034 23.7 3.8 17 329-345 63-79 (122)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.4e-52 Score=427.91 Aligned_cols=345 Identities=21% Similarity=0.367 Sum_probs=299.2
Q ss_pred CchhhhCCCCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhccC----
Q 016271 1 MQFFALNGFPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQDS---- 76 (392)
Q Consensus 1 v~yF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---- 76 (392)
++||+++|++||++.|||||++|+++.+.+.+. +..+..+++.+.|++|+.+++.............+
T Consensus 255 ~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 326 (617)
T TIGR00955 255 VPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN--------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKD 326 (617)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHHhhcCccccc--------chHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccc
Confidence 379999999999999999999999986543221 12344567778888887766554443322211000
Q ss_pred -CccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 016271 77 -GALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVASFLTFM 155 (392)
Q Consensus 77 -~~~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~ 155 (392)
......++.+++++|+.+|++|.++..+|||.++..++++.+++++++|++|++.+.++.+++++.|++|++++..++.
T Consensus 327 ~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~ 406 (617)
T TIGR00955 327 SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQ 406 (617)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1112245678999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred hh-cccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHH
Q 016271 156 TI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLV 234 (392)
Q Consensus 156 ~~-~~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~ 234 (392)
++ .+++.++.||.+|.||+.+|+|+.++|++|++++++|..++.+++|++++||++|++.+++.|+.+++++++..+++
T Consensus 407 ~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~ 486 (617)
T TIGR00955 407 NVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVA 486 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHH
Confidence 64 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcC-C-----
Q 016271 235 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF-D----- 308 (392)
Q Consensus 235 ~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~-~----- 308 (392)
.++|+++++++||...|..++++++.++++++|++++.++||. ||+ |++|+||++|++++++.|||++.++ +
T Consensus 487 ~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~~~~~~c~~~~ 564 (617)
T TIGR00955 487 TSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSDVDNIECTSAN 564 (617)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCCCccccccCcC
Confidence 9999999999999999999999999999999999999999998 554 6999999999999999999998764 3
Q ss_pred ----CCCCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016271 309 ----NNLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKM 357 (392)
Q Consensus 309 ----~~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~ 357 (392)
|..+|+++|+. +|++.++ .|.++++|++++++|+++++++||++.++
T Consensus 565 ~~~~c~~~g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 565 TTGPCPSSGEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred cCCCCCcChHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578999998 7887664 89999999999999999999999987654
No 2
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4e-52 Score=457.31 Aligned_cols=350 Identities=21% Similarity=0.390 Sum_probs=304.2
Q ss_pred CchhhhCCCCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhc------
Q 016271 1 MQFFALNGFPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQ------ 74 (392)
Q Consensus 1 v~yF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------ 74 (392)
++||+++|++||++.|||||++|+++.+.+ ...++..+ ......+++++.|++|+.+++...+++...++.
T Consensus 299 ~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 375 (1394)
T TIGR00956 299 KQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK--KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTK 375 (1394)
T ss_pred HHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc--cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhH
Confidence 379999999999999999999999875432 11111111 112234678999999988776666554332110
Q ss_pred -----------cCCccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHH
Q 016271 75 -----------DSGALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGS 143 (392)
Q Consensus 75 -----------~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g 143 (392)
+.......++..|+++|+++|++|+++..+|||..+..++++.+++|+++|++|+++++++++++++.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g 455 (1394)
T TIGR00956 376 EAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGG 455 (1394)
T ss_pred HHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Confidence 001122346788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHH
Q 016271 144 LLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYF 223 (392)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~ 223 (392)
++|+++++.+++++..++.+..||++|.||+.+++|++++|++|++++++|..++.+++|++++|||+|++.+++.|+.|
T Consensus 456 ~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f 535 (1394)
T TIGR00956 456 ALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFY 535 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHH
Confidence 99999999888888778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcC
Q 016271 224 VLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFE 303 (392)
Q Consensus 224 ~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~ 303 (392)
+++++++.+++.+++.++++++||...|+.+++++++++++++|+++|.++||. |..|++|+||++|++|+++.|||+
T Consensus 536 ~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~ 613 (1394)
T TIGR00956 536 LLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFH 613 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999998 445699999999999999999999
Q ss_pred CCcCCCC------------------------------CCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 304 GLKFDNN------------------------------LDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKT 353 (392)
Q Consensus 304 ~~~~~~~------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~ 353 (392)
+.+++|. .+|+++|+..++++.++ .|.+++++++++++|++++++++++
T Consensus 614 ~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 614 GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred CCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887662 37889999767887765 9999999999999999999999998
Q ss_pred hhh
Q 016271 354 VEK 356 (392)
Q Consensus 354 ~~~ 356 (392)
.+.
T Consensus 693 ~~~ 695 (1394)
T TIGR00956 693 NKG 695 (1394)
T ss_pred ccc
Confidence 763
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.1e-52 Score=454.49 Aligned_cols=342 Identities=20% Similarity=0.300 Sum_probs=300.5
Q ss_pred CchhhhC-CCC-CCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhccCCc
Q 016271 1 MQFFALN-GFP-CPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQDSGA 78 (392)
Q Consensus 1 v~yF~~~-G~~-cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 78 (392)
++||+++ |++ ||++.|||||+||+++.+.+.. ...++++.|++|+++++..+.+++...+.++..
T Consensus 1113 ~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~-------------~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 1179 (1470)
T PLN03140 1113 IEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK-------------LGIDFAEHYKSSSLYQRNKALVKELSTPPPGAS 1179 (1470)
T ss_pred HHHHHhcCCCCCCCCCCCchhhhhhhhccccccc-------------ccchHHHHHhccHHHHHHHHHHHHhccCCCCcc
Confidence 4899998 675 9999999999999987542211 113689999999988877666655443221111
Q ss_pred --cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHHHHHHH
Q 016271 79 --LEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDN---NSIQARGSLLMFVASFLT 153 (392)
Q Consensus 79 --~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~---~~~~~~~g~l~~~~~~~~ 153 (392)
....++.+|+++|++.|++|+++.+||||.++..|+++.+++|+++|++|++++++. .+++++.|++|+.+++.+
T Consensus 1180 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 1259 (1470)
T PLN03140 1180 DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259 (1470)
T ss_pred ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 123568899999999999999999999999999999999999999999999998654 577788999998888877
Q ss_pred HHhh-cccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHH
Q 016271 154 FMTI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACML 232 (392)
Q Consensus 154 ~~~~-~~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~ 232 (392)
+..+ ..+|.+..||.+|+||+.+|+|++++|++|++++|+|+.++.+++|.+++||++|++++++.|+.|+++++++.+
T Consensus 1260 ~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~ 1339 (1470)
T PLN03140 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFL 1339 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 7554 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCC--
Q 016271 233 LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-- 310 (392)
Q Consensus 233 ~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~-- 310 (392)
++.++|+++++++||.+.|+.++++++.++++|||+++|.++||. ||+ |++|+||++|++++++.++|+|.++.|.
T Consensus 1340 ~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y~~~~l~~~~f~~~~~~~~~~ 1417 (1470)
T PLN03140 1340 YFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAWTVYGLIVSQYGDVEDTIKVP 1417 (1470)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHHHHHHhhhHHHHhCCCCCcccCC
Confidence 999999999999999999999999999999999999999999998 676 5999999999999999999999887654
Q ss_pred -----CCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 311 -----LDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 311 -----~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
.++.+++.+++|++.++ .|.+++++++++++|++++++++|+.+.||
T Consensus 1418 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1418 GGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred CCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 34678888889998875 999999999999999999999999999876
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.6e-50 Score=411.60 Aligned_cols=341 Identities=18% Similarity=0.255 Sum_probs=269.0
Q ss_pred CchhhhCCCCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHH--Hh-hc---
Q 016271 1 MQFFALNGFPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEI--CK-AQ--- 74 (392)
Q Consensus 1 v~yF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~-~~--- 74 (392)
++||+++|++||++.|||||++|+++.+.+..... ..+.....+.+.+.|+++.. ++..+..+.. .. ..
T Consensus 295 ~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 369 (659)
T PLN03211 295 MAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVS----EREKPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFV 369 (659)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcc----ccccchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhh
Confidence 47999999999999999999999998653211000 00111122345556653221 1111111110 00 00
Q ss_pred ---c-CC-ccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHH
Q 016271 75 ---D-SG-ALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVA 149 (392)
Q Consensus 75 ---~-~~-~~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~ 149 (392)
. .. ......+.++|++|+.+|++|+++. +||+.+...|+++.+++|+++|++|++.+ ..+++++.|++|+++
T Consensus 370 ~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~ 446 (659)
T PLN03211 370 GSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFIS 446 (659)
T ss_pred hcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 0 00 0111235578999999999999998 89999989999999999999999999985 678999999999988
Q ss_pred HHHHHHh-hcccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHH
Q 016271 150 SFLTFMT-IGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLF 228 (392)
Q Consensus 150 ~~~~~~~-~~~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~ 228 (392)
++.++.+ +.+++.|+.||++|.||+.+|+|++++|++|++++++|..++.+++|++++|||+|++.+++.|+.|+++++
T Consensus 447 ~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~ 526 (659)
T PLN03211 447 IFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLL 526 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHH
Confidence 7766654 578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCc--
Q 016271 229 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK-- 306 (392)
Q Consensus 229 l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~-- 306 (392)
++.+++.++|++++++++|...|+.+++++..++++|||++++ +||. ||. |++|+||++|++++++.|||.+.+
T Consensus 527 l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~-W~~ylS~~~y~~eal~~nef~~~~~~ 602 (659)
T PLN03211 527 GYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-CMA-WIKYISTTFYSYRLLINVQYGEGKRI 602 (659)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-HHH-HHHHhCHHHHHHHHHHHHhcCCcccc
Confidence 9999999999999999999999999999999999999999987 7998 555 599999999999999999998643
Q ss_pred ---CCCCC------CHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 307 ---FDNNL------DGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 307 ---~~~~~------~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
+.|.. .+..++.+ ...+.. +.|.++++|++++++|++++|++|++.+
T Consensus 603 ~~~~~C~~~~~~~~~~c~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 603 SSLLGCSLPHGSDRASCKFVEE-DVAGQI-SPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccccCCCCcccCCCCCCccchh-hhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24531 11123332 222222 4899999999999999999999998654
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.2e-50 Score=440.00 Aligned_cols=338 Identities=17% Similarity=0.277 Sum_probs=292.6
Q ss_pred CchhhhCCC-CCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhccC---
Q 016271 1 MQFFALNGF-PCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQDS--- 76 (392)
Q Consensus 1 v~yF~~~G~-~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--- 76 (392)
++||+++|+ +||++.|||||+||+++.+.+.. ...++.+.|+.|.+.++..++++........
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 1062 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAED 1062 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCcc
Confidence 489999996 99999999999999998643221 1236889999998877766655544332110
Q ss_pred --CccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHH
Q 016271 77 --GALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVASFLTF 154 (392)
Q Consensus 77 --~~~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~~~~~~ 154 (392)
.....+++++|+++|+++|++|+++++||||.++..|+++.+++|+++|++|+++++++.+++++.|++|+.+++..+
T Consensus 1063 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1063 DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 011224688999999999999999999999999999999999999999999999999999999999999988776666
Q ss_pred HhhcccchhHHHHHHH-HHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhH-------HHHHHHH
Q 016271 155 MTIGGFPSFVEDMKVF-ERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQH-------FTYFVLL 226 (392)
Q Consensus 155 ~~~~~~~~~~~er~~~-~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~ 226 (392)
.....++.++.||.++ .||+.+|+|+..+|++|++++|+|+.++.+++|.+++||++|++.++.. |++++++
T Consensus 1143 ~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~ 1222 (1394)
T TIGR00956 1143 LIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLL 1222 (1394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHH
Confidence 5556788999999886 8999999999999999999999999999999999999999999987765 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCc
Q 016271 227 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK 306 (392)
Q Consensus 227 ~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~ 306 (392)
++++.+++.++|+++++++||...|+.+++++..++++|||+++|.++||. +|+| ++|+||++|++++++.++|++.+
T Consensus 1223 ~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~w-~~~~sp~~y~~~~l~~~~~~~~~ 1300 (1394)
T TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWIF-MYRCSPFTYLVQALLSTGLADVP 1300 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHhH-HHhcCHHHHHHHHHHHHHcCCCe
Confidence 999999999999999999999999999999999999999999999999998 6774 99999999999999999999877
Q ss_pred CCCC--------------------------------------------CCHHHHHhhhhccccCchhHHHHHHHHHHHHH
Q 016271 307 FDNN--------------------------------------------LDGEQVLRDNWQLQMGYSKWVDLAILFGMVVF 342 (392)
Q Consensus 307 ~~~~--------------------------------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~ 342 (392)
+.|. .+|+++|+. .+++.++ .|.|++++++++++
T Consensus 1301 ~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~~~~~~ 1378 (1394)
T TIGR00956 1301 VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFIAFIFF 1378 (1394)
T ss_pred eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhhHHHHH
Confidence 5431 378899998 6777664 99999999999988
Q ss_pred HHHHHHHHHHHhhh
Q 016271 343 YRLVFLGIVKTVEK 356 (392)
Q Consensus 343 ~~~la~~~l~~~~~ 356 (392)
+ ++++++|+++.|
T Consensus 1379 ~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1379 N-IIATVFFYWLAR 1391 (1394)
T ss_pred H-HHHHHhhheEEE
Confidence 8 778888887643
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.7e-49 Score=433.71 Aligned_cols=351 Identities=17% Similarity=0.246 Sum_probs=297.5
Q ss_pred CchhhhCCCCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhcc--CCc
Q 016271 1 MQFFALNGFPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQD--SGA 78 (392)
Q Consensus 1 v~yF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~ 78 (392)
++||+++||+||++.|||||++|+++.+.. +..+...+.|.....++++++.|++|..+++..++++...+... ...
T Consensus 426 ~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 504 (1470)
T PLN03140 426 LEFFESCGFKCPERKGTADFLQEVTSKKDQ-EQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAA 504 (1470)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHhcCchhh-hhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccccc
Confidence 379999999999999999999998885422 11111111221123356789999999887766665544322211 112
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHHHHHHHHHH
Q 016271 79 LEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDN---NSIQARGSLLMFVASFLTFM 155 (392)
Q Consensus 79 ~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~---~~~~~~~g~l~~~~~~~~~~ 155 (392)
...+++..|++.|++.+++|+++.++||+..+..++++.+++|+++|++|++++.++ .+.+.+.|.+|+.+++.++.
T Consensus 505 ~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~ 584 (1470)
T PLN03140 505 LVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584 (1470)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 234568899999999999999999999999999999999999999999999986432 34566788888888888888
Q ss_pred hhcccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHH
Q 016271 156 TIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVE 235 (392)
Q Consensus 156 ~~~~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
++..++.+..||++|.||+..++|++++|++|++++++|..++.+++|++++|||+|++++++.|+.|+++++++.+++.
T Consensus 585 ~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~ 664 (1470)
T PLN03140 585 GFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAA 664 (1470)
T ss_pred HHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCC---C---
Q 016271 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD---N--- 309 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~---~--- 309 (392)
+++.+++++++|...|+.++++++.+++++||+++|.++||. || .|++|+||++|++++++.|||.+..+. |
T Consensus 665 ~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~-~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~ 742 (1470)
T PLN03140 665 GIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN-WW-EWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN 742 (1470)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch-HH-HHHHHhCHHHHHHHHHHHHhccCccccCcccCCC
Confidence 999999999999999999999999999999999999999998 45 459999999999999999999886543 2
Q ss_pred -CCCHHHHHhhhhccccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 310 -NLDGEQVLRDNWQLQMGY-SKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 310 -~~~g~~~L~~~~~~~~~~-~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
..+|+++|+. +|+..++ +.|.++++|++++++|+++++++|++.+
T Consensus 743 ~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 743 STRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred CcccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2689999987 7886543 4799999999999999999999999875
No 7
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-47 Score=390.10 Aligned_cols=344 Identities=29% Similarity=0.534 Sum_probs=285.9
Q ss_pred CchhhhCCCCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhccCCccc
Q 016271 1 MQFFALNGFPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQDSGALE 80 (392)
Q Consensus 1 v~yF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
++||+++|+|||++.|||||++|+++.+ ++.+ +.....+.....+.++......+... ............
T Consensus 259 ~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 328 (613)
T KOG0061|consen 259 LEFFSSLGFPCPELENPADFLLDLLSVD-SGTR------ELEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSKKV 328 (613)
T ss_pred HHHHHhCCCCCCCcCChHHHHHHHHccC-CCch------hHHhHHHHHHHhhhccccchhhhhHH---HHhhhccccccc
Confidence 4799999999999999999999999965 1111 01111222223333332111111000 111110001111
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHhh-cc
Q 016271 81 KKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVASFLTFMTI-GG 159 (392)
Q Consensus 81 ~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~ 159 (392)
+....++|+.|+..|++|.+++.+|||.+...|+++.+++++++|++|++++.+..+++++.|++++.+....+..+ ++
T Consensus 329 ~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~ 408 (613)
T KOG0061|consen 329 EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGA 408 (613)
T ss_pred ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11228999999999999999999999999999999999999999999999998888888999999999888877766 57
Q ss_pred cchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016271 160 FPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMM 239 (392)
Q Consensus 160 ~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~ 239 (392)
++.|+.||++|.||+.+|+|+.++|++|+.++++|+.++.+++|++++||++|++++...|.+++++.++..+++.++|+
T Consensus 409 i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~ 488 (613)
T KOG0061|consen 409 VPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGL 488 (613)
T ss_pred HHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcC--------CCCC
Q 016271 240 IVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF--------DNNL 311 (392)
Q Consensus 240 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~--------~~~~ 311 (392)
+++++++|...|+.+++++..+++++||++++.+.+|. |.+|++|+|+++|++|++++|+|.+... .|..
T Consensus 489 ~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~ 566 (613)
T KOG0061|consen 489 FISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCES 566 (613)
T ss_pred HHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccc
Confidence 99999999999999999999999999999999999998 4456999999999999999999996222 2347
Q ss_pred CHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 312 DGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 312 ~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
+|.++++. .+++.++ .|.|+.+++++.++|+++++++|+++.+.+
T Consensus 567 ~~~~~l~~-~~~~~~~-~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 567 TGEDVLKQ-LGFEDSS-FWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cHHHHHHh-cCCcccc-cchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999 7776554 999999999999999999999999987754
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-47 Score=396.15 Aligned_cols=342 Identities=18% Similarity=0.291 Sum_probs=301.1
Q ss_pred CchhhhCC-CCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhccC---
Q 016271 1 MQFFALNG-FPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQDS--- 76 (392)
Q Consensus 1 v~yF~~~G-~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--- 76 (392)
++||+++| .+||+.+|||||+||+++...+... -.+|++.|++|+++++++++++.+..+.++
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~-------------~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~ 1090 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEASL-------------SVDFAEIWKNSEEYKRNKELVKELSQPPPGFST 1090 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccccc-------------CccHHHHHhccHHHHHHHHHHHHHhcCCccCCc
Confidence 57999997 8999999999999999987544321 127999999999999999999888776444
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHh
Q 016271 77 GALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVASFLTFMT 156 (392)
Q Consensus 77 ~~~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 156 (392)
+...++++.+|+|.|++.+++|+...+||+|.++.+|+++.++.|+++|+.||+.+++.++++|..|++|+.+++.....
T Consensus 1091 ~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~ 1170 (1391)
T KOG0065|consen 1091 DLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNN 1170 (1391)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhh
Confidence 22345678999999999999999999999999999999999999999999999999999999999999999877665544
Q ss_pred hc-ccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHH
Q 016271 157 IG-GFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVE 235 (392)
Q Consensus 157 ~~-~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
.. ..+.+..||..++||+.+|+|+..+|++|++++|+|+.++++++|.++.|+++|+.+++.+++.+++.++++.+...
T Consensus 1171 ~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~ 1250 (1391)
T KOG0065|consen 1171 NQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFT 1250 (1391)
T ss_pred hhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33 45667788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCC-----
Q 016271 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN----- 310 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~----- 310 (392)
.+|+++..++||.+.|+.+.+.+......|||++.|...||. ||.| ++|+||++|.+++++..++++.+..|.
T Consensus 1251 ~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~ 1328 (1391)
T KOG0065|consen 1251 TLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMN 1328 (1391)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eeee-eeecCcHHHHHHHHHHHHhCCCceeeecCCcc
Confidence 999999999999999999999999999999999999999998 7875 999999999999999999999988775
Q ss_pred -------CCHHHHHhhhhc----cccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 311 -------LDGEQVLRDNWQ----LQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 311 -------~~g~~~L~~~~~----~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
.+..++++.++| +..+. ....-.+...+.+.+..++.+.+|+.+++|
T Consensus 1329 ~~~pp~g~tcge~m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1329 YFDPPSGQTCGEFMEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred ccCCCCCcCHHHHHHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 456788998887 44443 333333555788999999999999988755
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-45 Score=383.67 Aligned_cols=351 Identities=22% Similarity=0.383 Sum_probs=307.6
Q ss_pred CchhhhCCCCCCCCCCchHHHHHhhcCCchhhhhhccCCCCCcHHHHHHHHHHHhcCHhHHHHHHHHHHHHhhccC--Cc
Q 016271 1 MQFFALNGFPCPTLQNPSDHFLKTINKDFQEDIEKGLAGVVPTQEAIDILTKSYKSSDSYLQVRSQVAEICKAQDS--GA 78 (392)
Q Consensus 1 v~yF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~ 78 (392)
++||+++|+.||++.++|||+.++.+.. ++...+.....+......+++.+.|++|+.+++...+++...++... ..
T Consensus 350 ~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~a 428 (1391)
T KOG0065|consen 350 LPYFEDMGFKCPPRKGTADFLTEVTSKK-DQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAA 428 (1391)
T ss_pred HHHHHhcCccCCCccCHHHHHHHhhcCc-cccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchh
Confidence 4799999999999999999998888732 22221111212333344578999999999998888887776554322 33
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCC-CChhhHHHHHHHHHHHHHHHHHHhh
Q 016271 79 LEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLG-TDNNSIQARGSLLMFVASFLTFMTI 157 (392)
Q Consensus 79 ~~~~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~ 157 (392)
...+++..+.|.|++.+++|.+..+.||..++....++.+++++++|++|++.+ .+..+.+.+.|++|+.+++.++.++
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l 508 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL 508 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH
Confidence 566789999999999999999999999999999999999999999999999998 6777888999999999999999998
Q ss_pred cccchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHH
Q 016271 158 GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESL 237 (392)
Q Consensus 158 ~~~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~ 237 (392)
..++.....|++|.|+|....|+++++.++..+.++|..++.++++.++.|++.|+.++++.|+.++++++++..++.++
T Consensus 509 aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~l 588 (1391)
T KOG0065|consen 509 AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGL 588 (1391)
T ss_pred HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCC-------
Q 016271 238 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------- 310 (392)
Q Consensus 238 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~------- 310 (392)
..+++.++++...|+..+.+.+....+++|+++|..+||+ |.+|++|++|+.|++|+++.|||++++++|.
T Consensus 589 Fr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~ 666 (1391)
T KOG0065|consen 589 FRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYD 666 (1391)
T ss_pred HHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccc
Confidence 9999999999999999999999999999999999999998 6667999999999999999999999988874
Q ss_pred --------------------CCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 311 --------------------LDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 311 --------------------~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
..|.+++...++++..+ .|++++++++|.++|.++..+++.+.+
T Consensus 667 n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 667 NISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred ccccccccchhhccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 23445555545555554 999999999999999999999998875
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=2.1e-24 Score=192.60 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHhh-cccchhHHHH
Q 016271 90 TQCIVLTSRSFVNMYRDLGYY-WFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVASFLTFMTI-GGFPSFVEDM 167 (392)
Q Consensus 90 ~Q~~~L~~R~~~~~~R~~~~~-~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~er 167 (392)
+|++.+++|+++..+|||... ...++.++++++++|.++.+.+++.++. ++.++++..+...++... .......+||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999887 8999999999999999999887444444 667777666666664444 3447788999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 016271 168 KVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPN 247 (392)
Q Consensus 168 ~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~ 247 (392)
..+.||+.++.|++..|+++|.+.+++..++..+++..+.+++.|++.+ +++.+++.++++..+..++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999899876 66778888888899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhc
Q 016271 248 YLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 302 (392)
Q Consensus 248 ~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~ 302 (392)
.+.+..+.+.+..+++++||.++|.+.+|+ |.+|+.+++|++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999997 66679999999999999988765
No 11
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.76 E-value=2.2e-16 Score=145.36 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhccCCC---ChhhHHH-HHHHHHHHHHHHHHHhhcccchhHH
Q 016271 91 QCIVLTSRSFVNMYRD-LGYYWFRLGVYVLLGVGLATVFSNLGT---DNNSIQA-RGSLLMFVASFLTFMTIGGFPSFVE 165 (392)
Q Consensus 91 Q~~~L~~R~~~~~~R~-~~~~~~~~~~~~~~~ll~g~~f~~~~~---~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~ 165 (392)
+...+.+|+++.++|+ |..++..+++|+++.+++|..+....+ +.+..+. ..|++.+.++..+... .....+.+
T Consensus 6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~-~~~~~~~~ 84 (253)
T TIGR01291 6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFE-TIYATFAR 84 (253)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3566789999999999 999999999999999999999875422 1122211 2244444333333211 11122233
Q ss_pred --HHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 166 --DMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVAS 243 (392)
Q Consensus 166 --er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~ 243 (392)
|+..++|-+.... ++..++++|++.+....+++.++...+.+ ..|... ..++.....+.++..+++.++|.+++.
T Consensus 85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a~ 161 (253)
T TIGR01291 85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIE-WWSLIYILPVIALTGLAFASLSMLVAA 161 (253)
T ss_pred HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhch-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445554544 89999999999998888888776555554 344433 234554555566677888899999999
Q ss_pred hcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhcc
Q 016271 244 LVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQL 323 (392)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~ 323 (392)
..++.+.+..+...+..|++++||.+.|.+.+|+ |.+++.+++|++|+.|++-...+.+ +
T Consensus 162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~g~-~----------------- 221 (253)
T TIGR01291 162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVMLGG-P----------------- 221 (253)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHhCC-C-----------------
Confidence 9999999888889999999999999999999998 7777999999999999976654322 1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 324 QMGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 324 ~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
.. +.+.+++++.++.+++..++...+|++.
T Consensus 222 -~~-~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 222 -GT-QVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred -cH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 2567788899999988888877666543
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.73 E-value=5e-16 Score=141.67 Aligned_cols=227 Identities=13% Similarity=0.039 Sum_probs=163.2
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccC-CC----C-hhhHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 016271 98 RSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNL-GT----D-NNSIQ-ARGSLLMFVASFLTFMTIGGFPSFVEDMKVF 170 (392)
Q Consensus 98 R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~-~~----~-~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~er~~~ 170 (392)
|+++..+|||..+...+++|+++.+++|.++... +. + .+..+ -..|++.+.....+... .......+|+..+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~-~~~~~~~~~~g~~ 79 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS-GISVIWDRQFGFL 79 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCHH
Confidence 7788999999999999999999999999988653 11 1 11111 12244433322222211 1111122333333
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 016271 171 ERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLT 250 (392)
Q Consensus 171 ~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~ 250 (392)
.|=.. ...+...|+++|.+.+.+..+++.++...+.+++.+.+. ..++...+..++.+.+..++|.+++...+|.+.
T Consensus 80 ~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 80 KEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34333 344899999999999999999999888888887766553 344445555666777889999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccccCchhH
Q 016271 251 GIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQMGYSKW 330 (392)
Q Consensus 251 a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~ 330 (392)
++.+.+.+..++.++||.++|.+.+|+ |.+|+.+++|.+|+.|++......+.. .. +.+
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------~~-~~~ 215 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGVSP------------------TF-PLE 215 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCCCc------------------cc-chH
Confidence 888888889999999999999999998 667799999999999997654432211 11 377
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016271 331 VDLAILFGMVVFYRLVFLG 349 (392)
Q Consensus 331 ~~~~iL~~~~v~~~~la~~ 349 (392)
.++++++++.+++.+++..
T Consensus 216 ~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 216 QDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888754
No 13
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.70 E-value=4.8e-15 Score=136.64 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccC-CC------Ch--hh-HHHHHHHHHHHHHHHHHHhhcc
Q 016271 90 TQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNL-GT------DN--NS-IQARGSLLMFVASFLTFMTIGG 159 (392)
Q Consensus 90 ~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~-~~------~~--~~-~~~~~g~l~~~~~~~~~~~~~~ 159 (392)
.++.++++|+++.+.|||..+...+++|+++.+++|.+|... +. +. +. ..-..|++.+.....++.. +.
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-~~ 80 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-SL 80 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 678999999999999999999999999999999999998643 11 10 11 1122344333332222221 11
Q ss_pred cchhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 016271 160 FPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMM 239 (392)
Q Consensus 160 ~~~~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~ 239 (392)
.....+|+....+-+.... ++..+.++|++......+++.++...+.+ ..|.+.+...++.....+++..++..++|+
T Consensus 81 ~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~lgl 158 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGALGL 158 (253)
T ss_pred HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1122333334555555555 89999999999999888888766555554 346655444444444455667777889999
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCC---CccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHH
Q 016271 240 IVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL---PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV 316 (392)
Q Consensus 240 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~i---P~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~ 316 (392)
+++.++++.+.+..+.+.+..+++++||.+.|.+.+ |+ |.+|+.++||++|..|++-....++
T Consensus 159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~g~------------ 224 (253)
T TIGR03861 159 ALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALYGQ------------ 224 (253)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHhCC------------
Confidence 999999998888888888888999999999999877 55 7777999999999999986543211
Q ss_pred HhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 317 LRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVK 352 (392)
Q Consensus 317 L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~ 352 (392)
. .|..++++.++.+++..++...+|
T Consensus 225 ----------~-~~~~~~~~~~~~~v~~~~~~~~fr 249 (253)
T TIGR03861 225 ----------L-NLPALGWTLGATTLFTLLAFWGFD 249 (253)
T ss_pred ----------c-chhHHHHHHHHHHHHHHHHHHHhh
Confidence 1 244556677777777777766544
No 14
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.70 E-value=2.8e-15 Score=136.35 Aligned_cols=222 Identities=13% Similarity=0.020 Sum_probs=147.4
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHHHHHhhcccchhHHHH--HHHHHHhcCCCCc
Q 016271 104 YRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQA-RGSLLMFVASFLTFMTIGGFPSFVEDM--KVFERERLNGHYG 180 (392)
Q Consensus 104 ~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~er--~~~~rE~~~g~Y~ 180 (392)
+|||......+.+|+++.++++.++.+.. ..+..+. ..+.+-+..+..+... .-.....|| ..+.|-+.... +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTG--QAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHH--HHHHHHHHHHhCHHHHHhcCCC-c
Confidence 69999999999999999999998887632 1122222 2233322222222211 112223344 34555555544 9
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHH
Q 016271 181 ATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVP---NYLTGIITGAG 257 (392)
Q Consensus 181 ~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~---~~~~a~~~~~~ 257 (392)
+..|+++|++...+..+++..+..++ +++.|++..... ...++...+.......++.+++.+.+ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999999998888887776555544 456788754332 23333333344445566666666654 44555777788
Q ss_pred HHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccccCchhHHHHHHHH
Q 016271 258 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQMGYSKWVDLAILF 337 (392)
Q Consensus 258 ~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~~~~~iL~ 337 (392)
..++++++||.++|.+.+|+ |.+|+++++|++|+.+++.....++.+. . ..+.++++++
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~~~~------------------~-~~~~~~~~l~ 214 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVSVDT------------------F-GAVRDLVVVL 214 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCCCCh------------------h-hHHHHHHHHH
Confidence 88899999999999999998 7788999999999999987664433221 1 3788888899
Q ss_pred HHHHHHHHHHHHHHH
Q 016271 338 GMVVFYRLVFLGIVK 352 (392)
Q Consensus 338 ~~~v~~~~la~~~l~ 352 (392)
++.+++..++...+|
T Consensus 215 ~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 215 AFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999888887766544
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.64 E-value=1e-13 Score=128.03 Aligned_cols=244 Identities=11% Similarity=0.077 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhccC-CC--ChhhH-HHHHHHHHHHHHHHHHHhhcccch
Q 016271 88 FLTQCIVLTSRSFVNMYRDLGY-YWFRLGVYVLLGVGLATVFSNL-GT--DNNSI-QARGSLLMFVASFLTFMTIGGFPS 162 (392)
Q Consensus 88 ~~~Q~~~L~~R~~~~~~R~~~~-~~~~~~~~~~~~ll~g~~f~~~-~~--~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~ 162 (392)
.++-++.+.+|+++.+.||+.. +..-++++.++.+++|.++... ++ +.+.. .-..|++.+.....+... +...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~--~~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN--VASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4677889999999999999854 4445566666777777665422 11 11111 122344433332222211 1122
Q ss_pred hHHHH--HHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 016271 163 FVEDM--KVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 163 ~~~er--~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
+.++| ...+|=..+. .++..+.+++++......+++.++...+.+...|.+.. .........++........|++
T Consensus 84 i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 84 FFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 2222333334 48899999999998888777776666665555566532 2333333334444444556888
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhh
Q 016271 241 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDN 320 (392)
Q Consensus 241 i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~ 320 (392)
++...++.+....+.+.+..+++++||.+.|.+++|+ |.+++.+++|++|..|++-...+.+.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g~~--------------- 223 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLGIS--------------- 223 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcCCC---------------
Confidence 8888888877788888888999999999999999998 77789999999999999976544211
Q ss_pred hccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 321 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 321 ~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
+.+.|.++++++++.+++..++...+|+.++.|
T Consensus 224 -----~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 224 -----DVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred -----CccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 113688889999999999999888777665543
No 16
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.57 E-value=4.1e-14 Score=126.52 Aligned_cols=151 Identities=13% Similarity=0.043 Sum_probs=123.9
Q ss_pred CchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 016271 179 YGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI 258 (392)
Q Consensus 179 Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~ 258 (392)
-+.+.++++|.+...+..+++.++...+.+++.|++.. +++.+++..++.++++.++|.+++.++++...+. ....
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence 37788999999999999999999999999988898753 5677778888899999999999999998765443 3334
Q ss_pred HHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccccCchhHHHHHHHHH
Q 016271 259 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQMGYSKWVDLAILFG 338 (392)
Q Consensus 259 ~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~~~~~iL~~ 338 (392)
..++++++|.++|.+.+|+ |.+|+++++|++|+.+++....+.+. ..+.|.+++++++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~~--------------------~~~~~~~~~~L~~ 190 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGGN--------------------DGTLWQAVAVLLL 190 (208)
T ss_pred HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCCc--------------------HHHHHHHHHHHHH
Confidence 4566777898999999998 66779999999999999977665431 1137889999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016271 339 MVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 339 ~~v~~~~la~~~l~~~~ 355 (392)
+.+++.+++...+|+++
T Consensus 191 ~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 191 ILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999988777554
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.26 E-value=6.4e-11 Score=100.26 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchh--HHHHHHHHHHHHHHHHHHHHHH
Q 016271 163 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQ--HFTYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 163 ~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~--~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
..+|+..++|-+.+.. ++++++++|++......+++.++...+.+. .|++.+.+ ....+.++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777776 999999999999999999998888888854 58876532 1223333334556667777777
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHh
Q 016271 241 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFK 299 (392)
Q Consensus 241 i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~ 299 (392)
++...++.+..+. ...+.+|+.++||.+.|.+++|+ |.+|+.+++|++|+.+++-.
T Consensus 92 ~a~~~~~~~~~~~-~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 92 MALRKEGRFAMEA-LELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHHHcCCHHHHHH-HHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence 7766666665443 46678899999999999999998 99999999999999999864
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.24 E-value=1.1e-09 Score=101.78 Aligned_cols=169 Identities=19% Similarity=0.216 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 016271 165 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVA-S 243 (392)
Q Consensus 165 ~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~-~ 243 (392)
+++..+.|-..+.. +...+++++.+.......+...+...+..++.|.. ....+......+.+......++|.+++ .
T Consensus 115 ~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 192 (286)
T COG0842 115 REFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTF 192 (286)
T ss_pred HhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555 54666677777666666666666666666667743 334555556666667777778888666 3
Q ss_pred hcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhcc
Q 016271 244 LVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQL 323 (392)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~ 323 (392)
..++.+.+......+..++.++||.++|.+.+|+ |.+++.++.|.+|+.+++......+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~~~---------------- 254 (286)
T COG0842 193 AKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGWRN---------------- 254 (286)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCCch----------------
Confidence 5566777878888888999999999999999998 7778999999999999998776544322
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016271 324 QMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEK 356 (392)
Q Consensus 324 ~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
.+.+.++++++++.+++.+++...+|++++
T Consensus 255 ---~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 255 ---DGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 127888999999999999999988887665
No 19
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.92 E-value=3.8e-07 Score=83.24 Aligned_cols=218 Identities=15% Similarity=0.090 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcc---CCCChhhHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 016271 93 IVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSN---LGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKV 169 (392)
Q Consensus 93 ~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~---~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~er~~ 169 (392)
+++.||+++.+.|+|..+..-.+..++.|+.......+ ...+..+.+.-.+...+. +.....+.+.. .
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~p~l~~~-------~ 72 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFLWVFPGDFNILDYGYADLTPFFSLAPWV--FLFLIPAITMR-------S 72 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcCcchHHHHHHHHHHH--HHHHHHHHHHH-------H
Confidence 57899999999999998877666666666442211111 111122222212211111 11111111222 3
Q ss_pred HHHHhcCCC--------CchHHHHHHHHHHHhhHHHHHHhh---hhhhhhcccCC---ccchhHHHHHHHHHHHHHHHHH
Q 016271 170 FERERLNGH--------YGATAFVFGNTFSALPYLALISLI---PGAIVYDLPGL---HKGYQHFTYFVLLLFACMLLVE 235 (392)
Q Consensus 170 ~~rE~~~g~--------Y~~~~y~la~~l~~~~~~~~~~~i---~~~i~y~~~g~---~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
+-+||++|+ -++..++++|.+......++..+. +..... ..|. ..+.+.+....+..++...+..
T Consensus 73 ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 73 FAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIY-QLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 344555544 489999999999987654443321 111111 1222 2245555555555566777889
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCC--CccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCH
Q 016271 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL--PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDG 313 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~i--P~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g 313 (392)
++|.++|+++++...+..++..+...+. .|... ..++ |+ |.+|+.+++|.+|..+.. +..+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l~--~~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~-~g~i----------- 214 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLFY--FGFDG-LASLLWGG--SAYTISELGLSYHYESIS-RGVI----------- 214 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHH--HHHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHH-cCcc-----------
Confidence 9999999999998887665544332222 22211 2333 54 667799999988876644 1111
Q ss_pred HHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 314 EQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVK 352 (392)
Q Consensus 314 ~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~ 352 (392)
.+.++...+.+++++..++...++
T Consensus 215 ---------------~~~~~v~~~~~~~~~l~l~~~~~~ 238 (240)
T TIGR03518 215 ---------------DSRDVIYFLSITVLFLALTKLQLK 238 (240)
T ss_pred ---------------cHhHHHHHHHHHHHHHHHHHHHHh
Confidence 245566777777777777766554
No 20
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=4.7e-07 Score=83.23 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHhccCCCC---hhhHHHHHHHHHHHHHHHHHHhhcccchhH
Q 016271 89 LTQCIVLTSRSFVNMYRDLG-YYWFRLGVYVLLGVGLATVFSNLGTD---NNSIQARGSLLMFVASFLTFMTIGGFPSFV 164 (392)
Q Consensus 89 ~~Q~~~L~~R~~~~~~R~~~-~~~~~~~~~~~~~ll~g~~f~~~~~~---~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 164 (392)
+..++.|.+|+++...|+.. ...-.++.|.++.++++.+|...-.. .-...-..|++.+.....+. ..+...+.
T Consensus 17 ~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~~i--~~~~~s~~ 94 (263)
T COG1682 17 RRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSEAI--SEGAGSVV 94 (263)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH--HhHHHHhh
Confidence 45677789999998777654 34446677777777777777654221 11122233443222111110 01222223
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016271 165 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASL 244 (392)
Q Consensus 165 ~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~ 244 (392)
.+.+.+.+-+ .++..+.+++++.++....+..++.....-+. |..+ ..++........+..+.+.++|+++|.+
T Consensus 95 ~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~-~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l 168 (263)
T COG1682 95 ANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIIL-GVEP-SWHWLLLLPALLLLILFSVGLGLILASL 168 (263)
T ss_pred hhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333221 27889999999999887777765554444433 3333 3455555555555666677778888776
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccc
Q 016271 245 VPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQ 324 (392)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~ 324 (392)
..-..=-..+...+..+++..+|.+.|.+.+|+ .+++ +..+||+.+.+|..-...+.+...
T Consensus 169 ~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~-~~~~-~~~~NP~~~iie~~R~~~~~~~~~----------------- 229 (263)
T COG1682 169 GVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPE-QLRE-LVLLNPLTHIIESFRAPLLGGDVP----------------- 229 (263)
T ss_pred hhhcccHHHHHHHHHHHHHHhCceeeehhhccH-HHHH-HHHHCcHHHHHHHHHHHHhCCCcc-----------------
Confidence 544433334445566788889999999999998 4554 999999999999998877655331
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 325 MGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 325 ~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
.+.+....+++.++..++++...++.+
T Consensus 230 ----~~~~~~~~~~~~li~l~vg~~~~~~~~ 256 (263)
T COG1682 230 ----DLHLLVYILLLTLILLFVGLLLFRKFR 256 (263)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334444555555566666665544
No 21
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.65 E-value=5.8e-06 Score=76.90 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=93.3
Q ss_pred HHHHHhcCCC--------CchHHHHHHHHHHHhhHHHH---HHhhhhh---hhhcccCCccchhHHHHHHHHHHHHHH--
Q 016271 169 VFERERLNGH--------YGATAFVFGNTFSALPYLAL---ISLIPGA---IVYDLPGLHKGYQHFTYFVLLLFACML-- 232 (392)
Q Consensus 169 ~~~rE~~~g~--------Y~~~~y~la~~l~~~~~~~~---~~~i~~~---i~y~~~g~~~~~~~f~~~~l~~~l~~~-- 232 (392)
.+-+|+++|. +++..++++|.++.....++ ...+... ......|.+.+...+....+......+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4556666665 68999999999998877432 2111111 111123445555555544444333333
Q ss_pred -HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--cccccccHHHHHHHHhHhhhcCCCcCC
Q 016271 233 -LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR-LPNDLPHPFWK--YPLYYIAFHKYAYQGMFKNEFEGLKFD 308 (392)
Q Consensus 233 -~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~iP~~~w~--~~~~~lsp~~y~~~~l~~~~~~~~~~~ 308 (392)
+..+++.++|++++|...+...+..+.....+...... ..++.....|. ..+.+++|..+ ++.......++...
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~- 246 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGFV- 246 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccccc-
Confidence 45899999999999888877766655544433322221 11221110021 11466677553 22222222221110
Q ss_pred CCCCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016271 309 NNLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTV 354 (392)
Q Consensus 309 ~~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~ 354 (392)
+...|.++++++++.+++..+++..++++
T Consensus 247 -----------------~~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 247 -----------------WLSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01378889999999999999998755543
No 22
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.61 E-value=1e-05 Score=74.73 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHHHHHHHHHHhhc-ccch----
Q 016271 90 TQCIVLTSRSFVNMYRDLG-YYWFRLGVYVLLGVGLATVFSNLGTD-NNSIQARGSLLMFVASFLTFMTIG-GFPS---- 162 (392)
Q Consensus 90 ~Q~~~L~~R~~~~~~R~~~-~~~~~~~~~~~~~ll~g~~f~~~~~~-~~~~~~~~g~l~~~~~~~~~~~~~-~~~~---- 162 (392)
.-++.|.+|+++...|+-. ...-.++.|+++.+++..+|...... ..+. .+..|..+....+..+. ++..
T Consensus 19 ~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~~---~~~~fl~~Gl~pw~~fs~~~~~~~~a 95 (264)
T PRK15176 19 ELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIST---DDISFVIAGILPYLLFRYTITATMRT 95 (264)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999998777654 34456778888878777777543211 0000 01122222222222111 0000
Q ss_pred -hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 016271 163 -FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYD-LPGLHKGYQHFTYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 163 -~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~-~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
-..+..-..| +. ..-...++....++...++..++..++.+. ..+..+. .........++..+...++|++
T Consensus 96 ~si~~~~~li~----kv-~~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~ll~~l~~~glgli 168 (264)
T PRK15176 96 HSFSTSLAVVS----QV-KKRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQ--KPFLIFEGMVIAWLLGLSFGYF 168 (264)
T ss_pred HHHHHHhhcCC----CC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh--hHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111111 11 222333333334444433333332121121 1233322 2122222223344445566666
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhh
Q 016271 241 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDN 320 (392)
Q Consensus 241 i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~ 320 (392)
+|.+..-..-..-+...+..+++..+|.+.|.+.+|+ .++ ++.+.||+.+.+|+.-...+++...
T Consensus 169 ls~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~-~~~-~il~~NPl~~~ie~~R~~~~~~~~~------------- 233 (264)
T PRK15176 169 CDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY-SLL-SIFSWNPLLHANEIVREGMFEGYHS------------- 233 (264)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH-HHH-HHHHHCcHHHHHHHHHHHHhcCcCc-------------
Confidence 6654322211222344556778888999999999998 244 4889999999999998887754211
Q ss_pred hccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 321 WQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 321 ~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
.+.+....+++.++..++++++.|+.+
T Consensus 234 --------~~~~~~~~~~~~~~~l~~G~~~~~~~~ 260 (264)
T PRK15176 234 --------LYLEPFYPLAFSATLFLAGLIFHLICD 260 (264)
T ss_pred --------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 122335666777777777766666543
No 23
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.41 E-value=4.8e-08 Score=93.04 Aligned_cols=158 Identities=23% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhHHHHHH--HHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccC---CccchhHHHHHHHHHHHHHHHHHH
Q 016271 162 SFVEDMKV--FERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPG---LHKGYQHFTYFVLLLFACMLLVES 236 (392)
Q Consensus 162 ~~~~er~~--~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~ 236 (392)
...+||+. ..|-+..|. +...|++++.+..+...+++.++...+ +.| ++. .+++..++..++..++..+
T Consensus 181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHH
Confidence 33456555 444445665 999999999999999998888776664 344 443 2555566777788888999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHH
Q 016271 237 LMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV 316 (392)
Q Consensus 237 ~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~ 316 (392)
++.+++.++++...+..+..++..++..++|.++|.+++|+ |.+++.++.|..|..+++....+.+ .
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~P~~~~~~~~~~~~~~~-~---------- 321 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS--FLQWISSFLPFYWFIQGLRNIIYGD-W---------- 321 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH--HHHHHHHHhhHHHHHHHHHHHHHhc-H----------
Confidence 99999999999988887777776666677777788888987 5556899999999888875554211 1
Q ss_pred HhhhhccccCchhHHHHHHHHHHHHHHHHHHH
Q 016271 317 LRDNWQLQMGYSKWVDLAILFGMVVFYRLVFL 348 (392)
Q Consensus 317 L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~ 348 (392)
.+.+..+++++++.+++.+++.
T Consensus 322 ----------~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 322 ----------SEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp --------------------------------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1266777888888888777664
No 24
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=98.19 E-value=0.00011 Score=65.66 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 016271 92 CIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQ-ARGSLLMFVASFLTFMTIGGFPSFVEDMKVF 170 (392)
Q Consensus 92 ~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~er~~~ 170 (392)
++.+.||+++.-+|++.....-+...+....++.+.+ +.+.+... ...|++.....+.+..+. + ..|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al---~~~~~~l~~~~~gllWi~~lfa~~l~~--------~-r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFAL---GPDPDLLARVAPGLLWIALLFASLLGL--------N-RSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhc---CCchhHHHHHhHHHHHHHHHHHHHHHh--------h-HhH
Confidence 4679999999999999887766666555555555443 33333323 234555444434333332 2 357
Q ss_pred HHHhcCCC--------CchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 171 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVA 242 (392)
Q Consensus 171 ~rE~~~g~--------Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~ 242 (392)
.+|+++|. .++..++++|.++......+..++...+...+.|.+. ..+..+.+.+.+.+.....+|...+
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a 146 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA 146 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888877 3677899999999988777766666666555667653 4555666666777777778888877
Q ss_pred HhcchhHHHHHHHHHHHHHH
Q 016271 243 SLVPNYLTGIITGAGIQGLM 262 (392)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~ 262 (392)
+++-+......+.+++..|+
T Consensus 147 al~~~~r~~~~Ll~lL~lPl 166 (215)
T PF03379_consen 147 ALAAGARGREILLPLLLLPL 166 (215)
T ss_pred HHHHhccccCHHHHHHHHHH
Confidence 76655444444444444443
No 25
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=97.99 E-value=1.4e-05 Score=62.54 Aligned_cols=49 Identities=16% Similarity=0.410 Sum_probs=43.6
Q ss_pred CCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 016271 311 LDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMKPV 360 (392)
Q Consensus 311 ~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~k~~ 360 (392)
++|++||+.-+++..+| +|+|++|+++|+++|.++.++++.+.+..+..
T Consensus 31 V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~ 79 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSG 79 (103)
T ss_pred EeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 68999999768998886 99999999999999999999999988766653
No 26
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.85 E-value=0.0019 Score=60.19 Aligned_cols=242 Identities=15% Similarity=0.171 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhc---cCCC-----ChhhH--HHHH-HHHHHHHHHHHHHhhc
Q 016271 90 TQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFS---NLGT-----DNNSI--QARG-SLLMFVASFLTFMTIG 158 (392)
Q Consensus 90 ~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~---~~~~-----~~~~~--~~~~-g~l~~~~~~~~~~~~~ 158 (392)
.++..+.+++++...|+|.............++.....+. .... ..... .... ...++...+..+ .
T Consensus 2 ~~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l 78 (278)
T COG1277 2 SNILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPLLAIL---L 78 (278)
T ss_pred chhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHHHHHHH---H
Confidence 3577889999999999998877665444445554444442 1111 11111 0000 111111111111 1
Q ss_pred ccchhHHHHHHHHHHhcCCC--------CchHHHHHHHHHHHhhHHHHHHhhhh--h-hhhcccCCcc---chhHHHHHH
Q 016271 159 GFPSFVEDMKVFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPG--A-IVYDLPGLHK---GYQHFTYFV 224 (392)
Q Consensus 159 ~~~~~~~er~~~~rE~~~g~--------Y~~~~y~la~~l~~~~~~~~~~~i~~--~-i~y~~~g~~~---~~~~f~~~~ 224 (392)
+. ..+-+|+++|+ .++..-+.+|.+..+...++..++.. . ......|... +......+.
T Consensus 79 ~~-------~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 151 (278)
T COG1277 79 GA-------DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFL 151 (278)
T ss_pred cc-------chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 22 34556666666 68889999999998866666555544 1 2333344433 222455667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhccccc------CCCCCCccccccccccccHHHHHHHHhH
Q 016271 225 LLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR------LPNDLPHPFWKYPLYYIAFHKYAYQGMF 298 (392)
Q Consensus 225 l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~------~~~~iP~~~w~~~~~~lsp~~y~~~~l~ 298 (392)
...++...+..+++.+++...++...+...+..+.....+..+... .....| +...+...+|..+..+...
T Consensus 152 ~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~ 228 (278)
T COG1277 152 GSSLLYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAF 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhh
Confidence 7777788888899999999999888777766655544433222211 111111 1122677888887777655
Q ss_pred hhhcCC-CcCCCCCCHHHHHhhhhccc-cCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 299 KNEFEG-LKFDNNLDGEQVLRDNWQLQ-MGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 299 ~~~~~~-~~~~~~~~g~~~L~~~~~~~-~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
...... ... .+ .+.. .....|.++.+++++.+++..++++.+++++
T Consensus 229 ~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 229 TILLQSGFSD----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred hhcccccccc----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444311 000 00 0011 1113788999999999999999988776554
No 27
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=97.73 E-value=0.0028 Score=56.18 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHH-HHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 016271 95 LTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQAR-GSLLMFVASFLTFMTIGGFPSFVEDMKVFERE 173 (392)
Q Consensus 95 L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~~~~~er~~~~rE 173 (392)
+.+|+++.-+|++.....-++..++...++.+-+ +.+.+..+.. .|++.....+....++ | ..|.+|
T Consensus 1 ~~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la~---gp~~~~l~~~apgilWva~lfa~ll~l--------~-rlF~~d 68 (211)
T TIGR01190 1 LIRRDLRLAFRAGGGILNPLWFFLIVVTLFPFGV---GPELKLLSRIAPGIVWVGALLSSLLSL--------D-RLFRDD 68 (211)
T ss_pred CcHHHHHHHHcccchHHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHHHHHHHh--------h-HHHHHH
Confidence 3689999999998877655555444444444333 4444334433 3555444444444332 2 478888
Q ss_pred hcCCC--------CchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016271 174 RLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLV 245 (392)
Q Consensus 174 ~~~g~--------Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~ 245 (392)
+++|. .+....+++|.++......+...+..-+.-.+.|++. .....+.+.+.+.+...+.+|-+.++++
T Consensus 69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt 146 (211)
T TIGR01190 69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALT 146 (211)
T ss_pred HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 4788899999999987766666655555555666653 3345666677777777888888887776
Q ss_pred chh
Q 016271 246 PNY 248 (392)
Q Consensus 246 ~~~ 248 (392)
-+.
T Consensus 147 ~g~ 149 (211)
T TIGR01190 147 VGL 149 (211)
T ss_pred Hhc
Confidence 543
No 28
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.52 E-value=0.0035 Score=61.33 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCcc--ch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 016271 180 GATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHK--GY--QHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG 255 (392)
Q Consensus 180 ~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~ 255 (392)
+...+++-|.+......++.+++++.+.. ..+.+. .. +.|+.+|...++...+.....-.+..+.+.+-.+ +.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~~-af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~~~--~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVSL-AFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPFMP--FW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HH
Confidence 88899999999999999999988888873 444332 33 4588888887776654433333333343333322 22
Q ss_pred HHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccccCchhHHHHHH
Q 016271 256 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQMGYSKWVDLAI 335 (392)
Q Consensus 256 ~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~~~~~i 335 (392)
.+..+.+.+.+ .+.|.+-.|. +++| .+-. |++.+++++....|++.. ....+++++
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~~--------------------~~lg~n~gi 372 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTCK--------------------GQLGRNYGI 372 (382)
T ss_pred HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCCc--------------------ccccchHHH
Confidence 22333444556 4559999998 7775 5555 999999999888765432 137888899
Q ss_pred HHHHHHHH
Q 016271 336 LFGMVVFY 343 (392)
Q Consensus 336 L~~~~v~~ 343 (392)
|+++.++-
T Consensus 373 l~aw~~v~ 380 (382)
T PF12051_consen 373 LFAWIVVN 380 (382)
T ss_pred HHHHHHHH
Confidence 99998763
No 29
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=97.48 E-value=0.078 Score=48.57 Aligned_cols=76 Identities=13% Similarity=0.023 Sum_probs=50.2
Q ss_pred HHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhh-----cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016271 172 RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVY-----DLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVP 246 (392)
Q Consensus 172 rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~ 246 (392)
|.-.+...++..+++||++......++..++...+.. ...+-+.+...+....+.++++++....+.++++....
T Consensus 78 k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g 157 (248)
T TIGR03733 78 KNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFG 157 (248)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333334588999999999887777766554322222 11112334456666777778888889999999998887
Q ss_pred h
Q 016271 247 N 247 (392)
Q Consensus 247 ~ 247 (392)
+
T Consensus 158 ~ 158 (248)
T TIGR03733 158 M 158 (248)
T ss_pred C
Confidence 5
No 30
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.41 E-value=0.038 Score=49.39 Aligned_cols=238 Identities=13% Similarity=0.039 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChh-----hHHHHHHHHHHHHHHHHHHhhcccc
Q 016271 87 DFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNN-----SIQARGSLLMFVASFLTFMTIGGFP 161 (392)
Q Consensus 87 s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~-----~~~~~~g~l~~~~~~~~~~~~~~~~ 161 (392)
++++..+.+.+-.+..+.--+...+.-.+...+-+++.+.++-.+.++.+ +..+..+.++.+.+....+...++-
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~ 82 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW 82 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777666666555555555555555555555545544433222 1223333333332222222222221
Q ss_pred hhHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHhhHHHHH---HhhhhhhhhcccCC---c-cchhHHHHHHHHHHH
Q 016271 162 SFVEDMKVFERERLNGH-----YGATAFVFGNTFSALPYLALI---SLIPGAIVYDLPGL---H-KGYQHFTYFVLLLFA 229 (392)
Q Consensus 162 ~~~~er~~~~rE~~~g~-----Y~~~~y~la~~l~~~~~~~~~---~~i~~~i~y~~~g~---~-~~~~~f~~~~l~~~l 229 (392)
.|.+|...|. -++..|.........+..+.. -.+..+..|.+.+- . .+......+.+.+.+
T Consensus 83 -------ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~ 155 (268)
T COG4587 83 -------EFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALAL 155 (268)
T ss_pred -------HHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHH
Confidence 2345555554 244455544444443332222 11112222223221 1 122222222222222
Q ss_pred HHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCC
Q 016271 230 CMLLVESLMMIVASL-VPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD 308 (392)
Q Consensus 230 ~~~~~~~~g~~i~~~-~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~ 308 (392)
.......+...+++. +.| +-++.+.........++||.+.|++-.|+ |.+-+--..|+.|.+.-=.......
T Consensus 156 ~~~~~F~i~f~~~~~aFwt-~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~P~~llvGk---- 228 (268)
T COG4587 156 LFLLRFLIQFTFGLFAFWT-ERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYTPVMLLVGK---- 228 (268)
T ss_pred HHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhccHHHHHhcc----
Confidence 222223333444433 344 44666677666778889999999999998 7665666788888765432222111
Q ss_pred CCCCHHHHHhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 309 NNLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKT 353 (392)
Q Consensus 309 ~~~~g~~~L~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~ 353 (392)
.+.+ ..+.+.++.+++.+++.++.-...|+
T Consensus 229 --------------~s~~-~il~al~v~~~Wl~im~~l~~~lWrr 258 (268)
T COG4587 229 --------------YSGA-QILKALLVQIGWLLIMWLLSRWLWRR 258 (268)
T ss_pred --------------ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 37888889999988888877654443
No 31
>COG1511 Predicted membrane protein [Function unknown]
Probab=97.01 E-value=0.0099 Score=63.47 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=110.2
Q ss_pred hcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 016271 174 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGII 253 (392)
Q Consensus 174 ~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~ 253 (392)
...+.+....|++++.+..+.....+..+....-+++.|++. ..-+++++..+.+++++..+-..+..++.+... .
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~--~~~~~~~~~~i~~s~~f~~ii~~lv~~~g~~g~--~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEV--KSPLLLVLFAIFSSVAFMIIIYLLVSLFGNPGK--F 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEecc--CchhHHHHHHHHHHHHHHHHHHHHHHHhCcchH--H
Confidence 566678888999999999999999999888888877777763 334455555566777766666666666665543 3
Q ss_pred HHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccccCchhHHHH
Q 016271 254 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQMGYSKWVDL 333 (392)
Q Consensus 254 ~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~~~~~ 333 (392)
+..++.+.+...+|-..|.+..|. +++. ++..-|++|++.++-..... ......|...
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~~~--------------------~~~~~~~~~~ 743 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVIGG--------------------PIPSNLWSGL 743 (780)
T ss_pred HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhhcc--------------------CchHHHhhhH
Confidence 445556667777888889999998 6665 99999999996665433211 1111378888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhccc
Q 016271 334 AILFGMVVFYRL-VFLGIVKTVEKMKP 359 (392)
Q Consensus 334 ~iL~~~~v~~~~-la~~~l~~~~~~k~ 359 (392)
+++.++.++|++ +.++.+....+.+.
T Consensus 744 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 770 (780)
T COG1511 744 LALIGFLILFIIGGLFLKLPLDKKLKK 770 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877777 44444444444333
No 32
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.042 Score=47.80 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHH-HHHHHHHHHHHHHHHhhcccchhHHHHH
Q 016271 90 TQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQA-RGSLLMFVASFLTFMTIGGFPSFVEDMK 168 (392)
Q Consensus 90 ~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~er~ 168 (392)
..+..+.+|++|.-+|.+.....-+........++.. .++++.+-... .-|++.....+.+..+. ||
T Consensus 2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~---~vGpd~~~la~iaPgilWia~lLA~lL~l--------~r- 69 (221)
T COG2386 2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPL---AVGPDPQLLARIAPGILWIAALLASLLGL--------ER- 69 (221)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc---ccCCchhHHHHhcchHHHHHHHHHHHHhH--------HH-
Confidence 4567899999999999998766555544444444433 33444333222 23555554444443332 44
Q ss_pred HHHHHhcCCCC--------chHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 016271 169 VFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 169 ~~~rE~~~g~Y--------~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
.|++|+++|.- ....-+++|+++....+.+.-++.+-..+.+.|.+ .+.+....+.+++.+...+.+|-.
T Consensus 70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga~ 147 (221)
T COG2386 70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGAV 147 (221)
T ss_pred HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHHH
Confidence 78999999872 45566889999988777777666666667677765 355665666666666665556655
Q ss_pred HHHhcchhH
Q 016271 241 VASLVPNYL 249 (392)
Q Consensus 241 i~~~~~~~~ 249 (392)
.++++-+..
T Consensus 148 gaALtv~lr 156 (221)
T COG2386 148 GAALTVGLR 156 (221)
T ss_pred HHHHHhcCc
Confidence 555544333
No 33
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.83 E-value=0.0022 Score=45.23 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=38.2
Q ss_pred CCHHHHHhhhhcccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016271 311 LDGEQVLRDNWQLQM-GYSKWVDLAILFGMVVFYRLVFLGIVKTVEK 356 (392)
Q Consensus 311 ~~g~~~L~~~~~~~~-~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
+-|.++|++ .|+.. ++++|..+++|++++++|.++..++|.+.+.
T Consensus 11 tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p 56 (65)
T PF08370_consen 11 TLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNP 56 (65)
T ss_pred cHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999 55544 4568999999999999999999999999864
No 34
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=95.91 E-value=1.2 Score=40.03 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=72.8
Q ss_pred HHHHhcCCC--------CchHHHHHHHHHHH-hhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 016271 170 FERERLNGH--------YGATAFVFGNTFSA-LPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 170 ~~rE~~~g~--------Y~~~~y~la~~l~~-~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
+.++.++|. ++...+.+.+-+.. ....++.+++.........+.+.+..++..+.+.+.+..+...++..+
T Consensus 54 i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~ 133 (229)
T PF06182_consen 54 ISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFI 133 (229)
T ss_pred HhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 45656666555543 223333333333333334567777778887777777777777777777
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhH
Q 016271 241 VASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMF 298 (392)
Q Consensus 241 i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~ 298 (392)
++.++=-......+. .....+++|...|.+-.|+ ..+..+.++.|+.+....=.
T Consensus 134 ~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P~ 187 (229)
T PF06182_consen 134 IGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVPA 187 (229)
T ss_pred HHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHHH
Confidence 776543222222222 2334458999999999998 33333555588887765533
No 35
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=95.80 E-value=0.94 Score=39.68 Aligned_cols=84 Identities=26% Similarity=0.378 Sum_probs=47.4
Q ss_pred HHHHHhcCCC--------CchHHHHHHHHHHHhhHHHHHHhhhhhhhh---cccCC-ccchhH----HHHHHHHHHHHHH
Q 016271 169 VFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVY---DLPGL-HKGYQH----FTYFVLLLFACML 232 (392)
Q Consensus 169 ~~~rE~~~g~--------Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y---~~~g~-~~~~~~----f~~~~l~~~l~~~ 232 (392)
.+.+|+++|+ .++..++.+|.++.....++..++...+.+ .+.+. ..+... ...+.+..++...
T Consensus 69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (232)
T PF12730_consen 69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSL 148 (232)
T ss_pred HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence 4445555554 489999999999998776666555333322 22232 222222 2233334444444
Q ss_pred HHHHHHHHHHHhcchhHHHHH
Q 016271 233 LVESLMMIVASLVPNYLTGII 253 (392)
Q Consensus 233 ~~~~~g~~i~~~~~~~~~a~~ 253 (392)
....+ .+++...+|...+..
T Consensus 149 ~~~~~-~~i~~~~~~~~~~i~ 168 (232)
T PF12730_consen 149 FISLL-LFISSLFRNSIVAII 168 (232)
T ss_pred HHHHH-HHHHHHHhhHHHHHH
Confidence 44455 777888887655543
No 36
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=95.75 E-value=0.54 Score=55.36 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=85.6
Q ss_pred cccchhHHHHHHHHHHhcC--CCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHH
Q 016271 158 GGFPSFVEDMKVFERERLN--GHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVE 235 (392)
Q Consensus 158 ~~~~~~~~er~~~~rE~~~--g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
..+.....||+.=.||... |+ +.+.|++|..+..+...++.+++.+++... +--....+++..++++++.++...
T Consensus 669 ~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~--~~~~~~s~~~~lfl~~~~y~~s~I 745 (2272)
T TIGR01257 669 MTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH--GRILHYSDPFILFLFLLAFSTATI 745 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CceeecCChHHHHHHHHHHHHHHH
Confidence 4456677788888888544 55 889999999999887777766554444321 111122344555556667777888
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHhccc-ccCCCCCCccccccccccccHHHHHHHHh
Q 016271 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGF-FRLPNDLPHPFWKYPLYYIAFHKYAYQGM 297 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~-~~~~~~iP~~~w~~~~~~lsp~~y~~~~l 297 (392)
.++.+++.++.+...|..++.++...+.+--.+ +.-.+.++.. ..+.++-++|.-+++..-
T Consensus 746 ~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~-~~~~~sL~sp~af~~g~~ 807 (2272)
T TIGR01257 746 MQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAD-LKTAVSLLSPVAFGFGTE 807 (2272)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHH-HHHHHHhcCHHHHHHHHH
Confidence 999999999999998888888776554432211 1123344431 222266677866665443
No 37
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=94.86 E-value=2.5 Score=41.14 Aligned_cols=211 Identities=16% Similarity=0.123 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC---hhhHHHH------HHHH---HHHHHHHHHH----h---hcccchhHHHHHH
Q 016271 109 YYWFRLGVYVLLGVGLATVFSNLGTD---NNSIQAR------GSLL---MFVASFLTFM----T---IGGFPSFVEDMKV 169 (392)
Q Consensus 109 ~~~~~~~~~~~~~ll~g~~f~~~~~~---~~~~~~~------~g~l---~~~~~~~~~~----~---~~~~~~~~~er~~ 169 (392)
.++.-.+-..+.++++|.+|.++++. ...+.+. .|.+ |+...+...+ + +..+.....||+.
T Consensus 299 ~lI~W~v~~fllglvygs~fg~l~~fL~~n~avrqave~~e~ag~le~~Flv~lfsIisil~a~~~V~~vlkl~geEr~n 378 (536)
T COG3559 299 SLILWTVGLFLLGLVYGSVFGGLGDFLGDNTAVRQAVERMEGAGALEQAFLVLLFSIISILAAAFAVSLVLKLHGEERGN 378 (536)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 34455566678889999999877542 1111111 0111 2221111111 1 1122233455555
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHhhHHHHHHh---hhhhhhhcccCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016271 170 FERERLNGHYGATAFVFGNTFSALPYLALISL---IPGAIVYDLPGL--HKGYQHFTYFVLLLFACMLLVESLMMIVASL 244 (392)
Q Consensus 170 ~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~---i~~~i~y~~~g~--~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~ 244 (392)
-...-.++-.|++..+.+.+...+....+..+ ......|.+.+- ..+....+.--++.+.-.+...++...+.-+
T Consensus 379 r~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll~GL 458 (536)
T COG3559 379 RAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLLFGL 458 (536)
T ss_pred hHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 44444444457666666666555443333322 222233333221 1111122222222222333444555555566
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcCCCCCCHHHHHhhhhccc
Q 016271 245 VPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDNWQLQ 324 (392)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~y~~~~l~~~~~~~~~~~~~~~g~~~L~~~~~~~ 324 (392)
.|........--.+......++| .-++|+ | +-.+||+.|--. .+.+
T Consensus 459 aPr~t~laWlyl~~~~fvtyLg~----Llslpe--w---l~nlSp~~hip~-------------------------lpve 504 (536)
T COG3559 459 APRFTPLAWLYLIVGFFVTYLGG----LLSLPE--W---LLNLSPFAHIPR-------------------------LPVE 504 (536)
T ss_pred chhhhhhHHHHHHHHHHHHHHHH----hcccHH--H---HhcCCccccCcc-------------------------CCcc
Confidence 67655444333333334445565 446776 5 677888654210 0011
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 325 MGYSKWVDLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 325 ~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
|.+.| .++.+.++.+....+++.+.|+|+
T Consensus 505 -d~n~~-pll~l~ii~vaL~~lGf~~yrRRd 533 (536)
T COG3559 505 -DFNAV-PLLWLLIIDVALITLGFMAYRRRD 533 (536)
T ss_pred -ccchH-HHHHHHHHHHHHHHhhHHHHhhhc
Confidence 11233 345566667777777777766554
No 38
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=94.84 E-value=2.8 Score=38.12 Aligned_cols=67 Identities=12% Similarity=0.008 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHHHhhHHHHHHhhhhhhhhc---ccCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016271 179 YGATAFVFGNTFSALPYLALISLIPGAIVYD---LPGLH-KGYQHFTYFVLLLFACMLLVESLMMIVASLV 245 (392)
Q Consensus 179 Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~---~~g~~-~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~ 245 (392)
.+....++||++......++..++..+..+. +.|.. .+...+....+..++.++....+.+.++...
T Consensus 80 vs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~l~ls~~~ 150 (241)
T TIGR03732 80 VDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCLFLARKF 150 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999877766666554433221 22311 2233444455556666666666666666444
No 39
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=92.76 E-value=1.2 Score=52.59 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=68.5
Q ss_pred chhHHHHHHHHH--HhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhccc--CCccchhHHHHHHHHHHHHHHHHHH
Q 016271 161 PSFVEDMKVFER--ERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLP--GLHKGYQHFTYFVLLLFACMLLVES 236 (392)
Q Consensus 161 ~~~~~er~~~~r--E~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~--g~~~~~~~f~~~~l~~~l~~~~~~~ 236 (392)
.....||..=.| ..-+|. +..+|+++..+.++...++..+++.++++..- ++. +...+...++++++.+++...
T Consensus 1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257 1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence 344567766443 456787 99999999999999888888777666655332 222 334555566777888999999
Q ss_pred HHHHHHHhcchhHHHHHHHH
Q 016271 237 LMMIVASLVPNYLTGIITGA 256 (392)
Q Consensus 237 ~g~~i~~~~~~~~~a~~~~~ 256 (392)
+.++++.++++...|.....
T Consensus 1777 ~tYl~SflF~~~~~A~~~~~ 1796 (2272)
T TIGR01257 1777 MMYPASFLFDVPSTAYVALS 1796 (2272)
T ss_pred HHHHHHHhhCCchhHHHHHH
Confidence 99999999999988865544
No 40
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.54 E-value=12 Score=33.38 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=66.2
Q ss_pred HHHhcCCC--------CchHHHHHHHHHHHhhHHHHHHhhhhhhhhcc---cCCccchh--HHHHHHHHHHHHHHHHHHH
Q 016271 171 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYDL---PGLHKGYQ--HFTYFVLLLFACMLLVESL 237 (392)
Q Consensus 171 ~rE~~~g~--------Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~---~g~~~~~~--~f~~~~l~~~l~~~~~~~~ 237 (392)
.-|+.+|. +++.-.|++|+..-+....+.+++....++.. .|...+.. .++.-...-++.+.-...+
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555 67888899999988877776655544444322 23332222 2333333344455555567
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHH
Q 016271 238 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHK 291 (392)
Q Consensus 238 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~~~~lsp~~ 291 (392)
=...+..++|...+..++... .+.+.. .-++.|. | +.|-.|..
T Consensus 156 Q~wLsm~fknf~~al~igI~l-~a~fva-----~~~s~~~--~---~PW~~pi~ 198 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL-PALFVA-----SAESLPV--W---LPWASPIL 198 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH-HHHHHH-----hccccCc--c---ccchhhhh
Confidence 777788889988888777665 222222 3455776 5 66667755
No 41
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=87.77 E-value=14 Score=36.59 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=51.3
Q ss_pred CchHHHHHHHHHHHhhHHHHHHhhhhhhhhc---------ccC--CccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 016271 179 YGATAFVFGNTFSALPYLALISLIPGAIVYD---------LPG--LHKGYQHFTYFVLLLFACM-LLVESLMMIVASLVP 246 (392)
Q Consensus 179 Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~---------~~g--~~~~~~~f~~~~l~~~l~~-~~~~~~g~~i~~~~~ 246 (392)
-|+..++.+|++.-....+++..+..+..++ ..+ +...+..+..+.+++.+.+ +...+++.+++..+.
T Consensus 227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~ 306 (407)
T COG1668 227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG 306 (407)
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999887666666521 111 1222333434444444333 445558888899999
Q ss_pred hhHHHHHHHH
Q 016271 247 NYLTGIITGA 256 (392)
Q Consensus 247 ~~~~a~~~~~ 256 (392)
+.+.++....
T Consensus 307 ~~k~aq~~~~ 316 (407)
T COG1668 307 SIKEAQTLIS 316 (407)
T ss_pred CHHHHHHHhh
Confidence 8888776665
No 42
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=87.02 E-value=22 Score=35.66 Aligned_cols=107 Identities=7% Similarity=0.036 Sum_probs=62.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHHHHhhcccch
Q 016271 83 STHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPS 162 (392)
Q Consensus 83 ~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 162 (392)
+++.+...-...+++.+++...|++..+. -++.|+++++..-......++... ...+........+++.+...
T Consensus 241 ~~~~k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~~~~~------~~~~~i~~~~~~ss~~~~~~ 313 (449)
T PF09847_consen 241 KFKIKIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPFIFMILSSGDPLS------LTIFYIIIIGVYSSMMSDAL 313 (449)
T ss_pred eeccccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHHhhcCchhH------HHHHHHHHHHHHHHHHHHHH
Confidence 34455566678899999999999988765 577777777664322222222111 11222222223333343344
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHH
Q 016271 163 FVEDMKVFERERLNGHYGATAFVFGNTFSALPYLA 197 (392)
Q Consensus 163 ~~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~ 197 (392)
...|++.+.--+.-.. +...+..+|.+.......
T Consensus 314 l~~E~~~~~~l~sLPi-~~~~~v~sKil~~~~i~~ 347 (449)
T PF09847_consen 314 LKIEGEGFEFLRSLPI-KKREFVRSKILIPSIIPS 347 (449)
T ss_pred HHHhhhcchhHhhCCC-ChHHHHHHHHHHHHHHHH
Confidence 4456666544444444 888999999998764443
No 43
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=67.57 E-value=90 Score=27.98 Aligned_cols=48 Identities=8% Similarity=-0.205 Sum_probs=34.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhc
Q 016271 82 KSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFS 129 (392)
Q Consensus 82 ~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~ 129 (392)
++..++.++|++..++-+-+..-+=+..++..++.+++.++++|+++.
T Consensus 3 k~k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 3 KPKKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred ccccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345778899999888777665444445566677778888888888874
No 44
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=67.17 E-value=42 Score=36.81 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=67.1
Q ss_pred chhHHHHHHHHH--HhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 016271 161 PSFVEDMKVFER--ERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLM 238 (392)
Q Consensus 161 ~~~~~er~~~~r--E~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~~g 238 (392)
.....||..-.| +.-+|+ +..+|+++..+.+.+..++..++...+++. .| .....+.....+..++.......+.
T Consensus 317 ~~li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~-f~-~~~~~~~~~~~~~~~l~~~s~i~l~ 393 (885)
T KOG0059|consen 317 LSLILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLI-FG-FFAGNNTVIILLLLLLYIRSAIPLT 393 (885)
T ss_pred hHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhe-ee-cccccchHHHHHHHHHHHHHHHHHH
Confidence 344456666554 477787 899999999999999988887776665553 33 2233445555566667777788899
Q ss_pred HHHHHhcchhHHHHHHHHHHH
Q 016271 239 MIVASLVPNYLTGIITGAGIQ 259 (392)
Q Consensus 239 ~~i~~~~~~~~~a~~~~~~~~ 259 (392)
...+.+++....+.....+..
T Consensus 394 y~~s~~f~~~~~~~v~~~i~~ 414 (885)
T KOG0059|consen 394 YILSFIFSKESTASVILSIYN 414 (885)
T ss_pred HHHHHHhcCCcCceeehhhHH
Confidence 999999888877766554443
No 45
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=64.79 E-value=13 Score=23.09 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 016271 108 GYYWFRLGVYVLLGVGLATVF 128 (392)
Q Consensus 108 ~~~~~~~~~~~~~~ll~g~~f 128 (392)
+..++-+..|++|++++|++|
T Consensus 4 Sl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999998
No 46
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=64.59 E-value=7 Score=31.83 Aligned_cols=17 Identities=24% Similarity=0.694 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016271 330 WVDLAILFGMVVFYRLV 346 (392)
Q Consensus 330 ~~~~~iL~~~~v~~~~l 346 (392)
|.-++++++++++++++
T Consensus 2 W~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFL 18 (130)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 54444544444444333
No 47
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=60.29 E-value=10 Score=32.10 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=24.9
Q ss_pred HHHHHhhcChhHHH---HHHHHHHHHHHHHHHHhcc
Q 016271 98 RSFVNMYRDLGYYW---FRLGVYVLLGVGLATVFSN 130 (392)
Q Consensus 98 R~~~~~~R~~~~~~---~~~~~~~~~~ll~g~~f~~ 130 (392)
|.+++.+|||..+. .-+++|+++++++|..+++
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57888999996543 4467788888888888754
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.32 E-value=15 Score=29.48 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 016271 329 KWVDLAILFGMVVFYRLVFLGI 350 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~ 350 (392)
.+..+++++|++.+-.+++|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 5677777777665555555554
No 49
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=58.14 E-value=28 Score=32.94 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=36.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q 016271 82 KSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVF 128 (392)
Q Consensus 82 ~~~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f 128 (392)
++...+|+.|-...+++.+++.+|||...++.++...+..+++|..+
T Consensus 3 ~~~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~~ 49 (309)
T PRK11026 3 RQFTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVCY 49 (309)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999988776666555555555543
No 50
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=54.46 E-value=1.4e+02 Score=25.60 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhh
Q 016271 166 DMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIV 207 (392)
Q Consensus 166 er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~ 207 (392)
|+....+-..+-..++..+..||.+..+...++..++.....
T Consensus 60 ~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~ 101 (206)
T PF13346_consen 60 EKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIA 101 (206)
T ss_pred HhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444478999999999999887777766555443
No 51
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=46.39 E-value=30 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 016271 338 GMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 338 ~~~v~~~~la~~~l~~~~~~k 358 (392)
++.+...+.-..+||+..+.|
T Consensus 10 viVlgvIigNia~LK~sAk~K 30 (55)
T PF11446_consen 10 VIVLGVIIGNIAALKYSAKMK 30 (55)
T ss_pred HHHHHHHHhHHHHHHHhcccC
Confidence 334445555677789887744
No 52
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=44.18 E-value=27 Score=33.45 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
.-..+++++++.+++.++ |+.|||||+.|
T Consensus 312 IiaSiIAIvvIVLIMvII-YLILRYRRKKK 340 (353)
T TIGR01477 312 IIASIIAILIIVLIMVII-YLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhcch
Confidence 566666666666666554 77899998744
No 53
>PTZ00046 rifin; Provisional
Probab=43.72 E-value=27 Score=33.50 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
.-..+++++++.+++.++ |+.|||||+.|
T Consensus 317 IiaSiiAIvVIVLIMvII-YLILRYRRKKK 345 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVII-YLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhcch
Confidence 566666666666666554 77799998744
No 54
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=43.37 E-value=60 Score=23.53 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 016271 336 LFGMVVFYRLVFLGI 350 (392)
Q Consensus 336 L~~~~v~~~~la~~~ 350 (392)
++|+.++|.+|..+.
T Consensus 9 i~Gm~iVF~~L~lL~ 23 (79)
T PF04277_consen 9 IIGMGIVFLVLILLI 23 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 55
>COG4393 Predicted membrane protein [Function unknown]
Probab=43.06 E-value=2.7e+02 Score=26.58 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcchhHH
Q 016271 234 VESLMMIVASLVPNYLT 250 (392)
Q Consensus 234 ~~~~g~~i~~~~~~~~~ 250 (392)
+.-+|.++++-.|..+.
T Consensus 41 ~~~~g~~~~~y~pKsq~ 57 (405)
T COG4393 41 FGYFGFFIAAYFPKSQN 57 (405)
T ss_pred HHHHHHHHHHhcccccc
Confidence 34567777776665554
No 56
>COG4325 Predicted membrane protein [Function unknown]
Probab=41.07 E-value=3.5e+02 Score=26.47 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHhhhhhhhhcccCCccch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016271 164 VEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGY-QHFTYFVLLLFACMLLVESLMMIVA 242 (392)
Q Consensus 164 ~~er~~~~rE~~~g~Y~~~~y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~~~~-~~f~~~~l~~~l~~~~~~~~g~~i~ 242 (392)
++--..|.|++.+.. .++. ++.+++|++.+---+|-..+. +.|..+..+...+.+...++|.++.
T Consensus 114 PRll~~fmrd~~nqv------vLa~--------FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisig~~iy 179 (464)
T COG4325 114 PRLLRTFLRDVPNQV------VLAI--------FLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGALIY 179 (464)
T ss_pred HHHHHHHhhcCchHH------HHHH--------HHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHHHHHHH
Confidence 445556666655433 2222 333334444433334433333 6677666666666666667777665
Q ss_pred Hh---cchhHHHHHHHHH
Q 016271 243 SL---VPNYLTGIITGAG 257 (392)
Q Consensus 243 ~~---~~~~~~a~~~~~~ 257 (392)
.+ ..+...++++..+
T Consensus 180 fl~~l~~siq~~n~i~kv 197 (464)
T COG4325 180 FLHHLMHSIQIDNIIDKV 197 (464)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 44 2333444444433
No 57
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=39.70 E-value=28 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 016271 335 ILFGMVVFYRLVFLGIVKTVEKMKPVVKAFM 365 (392)
Q Consensus 335 iL~~~~v~~~~la~~~l~~~~~~k~~~~~~~ 365 (392)
.++...++.-+.++++|..-.+-|.+.+|.+
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455555667777766666565555543
No 58
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=38.66 E-value=67 Score=30.42 Aligned_cols=44 Identities=11% Similarity=-0.180 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHH
Q 016271 84 THADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATV 127 (392)
Q Consensus 84 ~~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~ 127 (392)
|..-|+.|-+..+++.+++.+|||...++.++...+..+++|..
T Consensus 5 ~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~~ 48 (309)
T TIGR00439 5 YASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLVM 48 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 45568889999999999999999988776666555544444544
No 59
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.33 E-value=28 Score=28.27 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH-HHHHHh
Q 016271 336 LFGMVVFYRLVFL-GIVKTV 354 (392)
Q Consensus 336 L~~~~v~~~~la~-~~l~~~ 354 (392)
|++++|+++++.+ ++..+.
T Consensus 4 l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 444433
No 60
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=37.57 E-value=86 Score=23.23 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 016271 335 ILFGMVVFYRLVFLGI 350 (392)
Q Consensus 335 iL~~~~v~~~~la~~~ 350 (392)
+++|+.++|.+|..+.
T Consensus 11 ~v~GM~~VF~fL~lLi 26 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLI 26 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
No 61
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=33.99 E-value=46 Score=31.34 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
....+++++++.+++.++ |+.|||||++|
T Consensus 258 I~aSiiaIliIVLIMvII-YLILRYRRKKK 286 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVII-YLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 455555555555555555 66688888644
No 62
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=33.05 E-value=4.5e+02 Score=25.31 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHH
Q 016271 85 HADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATV 127 (392)
Q Consensus 85 ~~s~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~ 127 (392)
++.-....+.|++|.+++...||.+-..-+..| .+.+++..+
T Consensus 134 Qs~~iEsTYyll~~YlKk~l~Dp~~~~~~lGvP-G~~lLiy~i 175 (344)
T PF04123_consen 134 QSRGIESTYYLLGRYLKKALSDPEYRRTFLGVP-GLILLIYAI 175 (344)
T ss_pred cCCCcHHHHHHHHHHHHHhhcChhhhceeecch-HHHHHHHHH
Confidence 344567889999999999999999987777667 444444333
No 63
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.90 E-value=1.5e+02 Score=19.67 Aligned_cols=36 Identities=11% Similarity=-0.064 Sum_probs=19.3
Q ss_pred HHHHHHHhhcChhHHHHHHHHH-HHHHHHHHHHhccC
Q 016271 96 TSRSFVNMYRDLGYYWFRLGVY-VLLGVGLATVFSNL 131 (392)
Q Consensus 96 ~~R~~~~~~R~~~~~~~~~~~~-~~~~ll~g~~f~~~ 131 (392)
.++.++.+.||+..+..-++.. ++...++|-.+...
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566677778987765544433 33333444444343
No 64
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=30.52 E-value=2.8e+02 Score=29.63 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHh
Q 016271 89 LTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVF 128 (392)
Q Consensus 89 ~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f 128 (392)
...+++.++|+..+.+|. +.-..+...++|+++.++=
T Consensus 74 ~~~~~~~~~r~~q~i~r~---l~eDW~flalLG~imAlvS 110 (931)
T KOG0476|consen 74 RETCQEFLTRQMQNIVRK---LGEDWFFLALLGVIMALVS 110 (931)
T ss_pred HHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH
Confidence 345677888888888774 3334445555555555443
No 65
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.06 E-value=68 Score=29.72 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKAF 364 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k~~~~~~ 364 (392)
.+...++|+++.|++.+|..+ |. +|+|..|+|-
T Consensus 261 cgiaalvllil~vvliiLYiW-ly--rrRK~swkhe 293 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIW-LY--RRRKKSWKHE 293 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HH--Hhhccccccc
Confidence 667778888888888888655 33 3334456653
No 66
>PTZ00370 STEVOR; Provisional
Probab=26.94 E-value=77 Score=29.44 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKAF 364 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k~~~~~~ 364 (392)
.+...++|+++.|++.++..+ |. +|+|..|+|-
T Consensus 257 ygiaalvllil~vvliilYiw-ly--rrRK~swkhe 289 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIW-LY--RRRKNSWKHE 289 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HH--HhhcchhHHH
Confidence 667778888888888888655 33 3334556664
No 67
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.84 E-value=95 Score=20.30 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016271 332 DLAILFGMVVFYRLVFLGIVKTVE 355 (392)
Q Consensus 332 ~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
..+.++.+.++|..+.+.+.+.++
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 344555556666666555554333
No 68
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.63 E-value=43 Score=29.65 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKAFMSVPM 369 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k~~~~~~~~~~~ 369 (392)
.+..++++.|.+.+-.++..+.+-+.-|+++..+..+++|+
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~g~QagKq 77 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHKKGYQAGKQ 77 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHhhccccchhhhccc
Confidence 56666777766666555555555443444444455554554
No 69
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.35 E-value=1.6e+02 Score=22.14 Aligned_cols=26 Identities=8% Similarity=0.330 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016271 331 VDLAILFGMVVFYRLVFLGIVKTVEK 356 (392)
Q Consensus 331 ~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
..++++.++.++..++.++|=+.|+|
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkr 60 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKR 60 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33566666666767777777554444
No 70
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.80 E-value=4.4e+02 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=15.3
Q ss_pred cCCCCchHHHHHHHHHHHhhHHHHHH
Q 016271 175 LNGHYGATAFVFGNTFSALPYLALIS 200 (392)
Q Consensus 175 ~~g~Y~~~~y~la~~l~~~~~~~~~~ 200 (392)
..|.|...+-.++.+..-+|+++.-.
T Consensus 3 s~~iYp~i~~~l~~~~g~~PFSvgdi 28 (318)
T PF12725_consen 3 SRGIYPVISKLLRRLFGWFPFSVGDI 28 (318)
T ss_pred cCcchHHHHHHHHHhccCcChhHHHH
Confidence 34566666666666666666655443
No 71
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.21 E-value=1.6e+02 Score=23.74 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 016271 329 KWVDLAILFGMVVFYRL 345 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~ 345 (392)
-..-.+|+++.+++..+
T Consensus 63 ~~~i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIG 79 (122)
T ss_dssp -TCHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHH
Confidence 44545554444444433
Done!