Query 016271
Match_columns 392
No_of_seqs 150 out of 1755
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 10:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9u_A Receptor tyrosine-prote 38.5 57 0.002 18.9 4.0 30 329-358 6-35 (40)
2 2knc_B Integrin beta-3; transm 16.6 60 0.002 22.9 1.6 20 361-380 44-63 (79)
3 2h1z_A Hybrid atracotoxin; bet 16.4 50 0.0017 19.4 0.9 12 7-18 6-17 (39)
4 2rlw_A PLNF; toxin; NMR {Lacto 13.8 64 0.0022 17.8 0.9 11 16-26 19-29 (34)
5 2klu_A T-cell surface glycopro 10.8 2.9E+02 0.01 18.6 3.5 9 350-358 31-39 (70)
6 2nwl_A GLTPH, glutamate sympor 9.5 9.1E+02 0.031 22.5 8.1 63 184-246 44-108 (422)
7 2kv5_A FST, putative uncharact 7.9 3.3E+02 0.011 15.5 2.5 18 110-127 4-21 (33)
8 2q67_A Potassium channel prote 7.9 6.6E+02 0.022 18.4 5.5 40 88-130 4-43 (114)
9 2l2t_A Receptor tyrosine-prote 7.4 4.5E+02 0.015 16.1 4.4 33 331-363 12-44 (44)
10 2lx0_A Membrane fusion protein 7.3 3.5E+02 0.012 14.6 4.0 30 327-357 3-32 (32)
No 1
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=38.55 E-value=57 Score=18.85 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 329 KWVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
+...+.++.++.++|.+++--.|-|+-++.
T Consensus 6 l~malt~i~gl~vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEEEccccc
Confidence 566777888999999999988888876643
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.58 E-value=60 Score=22.88 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=9.8
Q ss_pred ccccccccccccccccCCCC
Q 016271 361 VKAFMSVPMKRTTQIMENPY 380 (392)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ 380 (392)
.++|.+-++++.-+..+||-
T Consensus 44 ~~kFEkE~~~~~w~~~~NPl 63 (79)
T 2knc_B 44 FAKFEEERARAKWDTANNPL 63 (79)
T ss_dssp HHHHHHHHHHHHHTTTTCCH
T ss_pred HHHHHHHHHhcccccCCCCC
Confidence 45665444444334455553
No 3
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=16.42 E-value=50 Score=19.44 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=9.5
Q ss_pred CCCCCCCCCCch
Q 016271 7 NGFPCPTLQNPS 18 (392)
Q Consensus 7 ~G~~cP~~~NPA 18 (392)
-|-|||.+++|.
T Consensus 6 sgQPCpyN~~pC 17 (39)
T 2h1z_A 6 VDQPCSLNTQPC 17 (39)
T ss_dssp TTSBCCTTSCCB
T ss_pred CCCCCCCCcccc
Confidence 377899999883
No 4
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=13.79 E-value=64 Score=17.79 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=8.2
Q ss_pred CchHHHHHhhc
Q 016271 16 NPSDHFLKTIN 26 (392)
Q Consensus 16 NPAD~~ld~v~ 26 (392)
.||||.+..+.
T Consensus 19 gpadwvisavr 29 (34)
T 2rlw_A 19 GPADWVISAVR 29 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 58999987553
No 5
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=10.79 E-value=2.9e+02 Score=18.58 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=4.7
Q ss_pred HHHHhhhcc
Q 016271 350 IVKTVEKMK 358 (392)
Q Consensus 350 ~l~~~~~~k 358 (392)
+.|.+++++
T Consensus 31 cvkcrhRrr 39 (70)
T 2klu_A 31 SVRSRHRRR 39 (70)
T ss_dssp HHHSSCCSS
T ss_pred hhHHHHHHH
Confidence 555555544
No 6
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=9.46 E-value=9.1e+02 Score=22.52 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhhcccCCc-cchhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016271 184 FVFGNTFSALPYLALISLIPGAIVYDLPGLH-KGYQHF-TYFVLLLFACMLLVESLMMIVASLVP 246 (392)
Q Consensus 184 y~la~~l~~~~~~~~~~~i~~~i~y~~~g~~-~~~~~f-~~~~l~~~l~~~~~~~~g~~i~~~~~ 246 (392)
..+++....+..+++.+++++.+..-..+++ .+.++. ..-.+..+.++..+..+|+.++.+.+
T Consensus 44 ~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 44 KPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777778888888999999888887774 344443 22233334455666677777776654
No 7
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=7.92 E-value=3.3e+02 Score=15.54 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016271 110 YWFRLGVYVLLGVGLATV 127 (392)
Q Consensus 110 ~~~~~~~~~~~~ll~g~~ 127 (392)
++..++.|++.|+++-++
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888887655
No 8
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=7.90 E-value=6.6e+02 Score=18.37 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcc
Q 016271 88 FLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGVGLATVFSN 130 (392)
Q Consensus 88 ~~~Q~~~L~~R~~~~~~R~~~~~~~~~~~~~~~~ll~g~~f~~ 130 (392)
+.-++..+.++.. ..+|++... ..+..++..+++|.+.+.
T Consensus 4 ~~~~~~rl~~~~~-~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 4 FLLTLKRMLRACL-RAWKDKEFQ--VLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhhhhHH--HHHHHHHHHHHHHHHHHH
Confidence 3445555666544 445666543 233334555566666544
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.41 E-value=4.5e+02 Score=16.07 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 016271 331 VDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKA 363 (392)
Q Consensus 331 ~~~~iL~~~~v~~~~la~~~l~~~~~~k~~~~~ 363 (392)
...++..+..++..++..+.+-+++|++..-++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kra 44 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKKKRA 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhhccC
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=7.33 E-value=3.5e+02 Score=14.65 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016271 327 YSKWVDLAILFGMVVFYRLVFLGIVKTVEKM 357 (392)
Q Consensus 327 ~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~ 357 (392)
+.+|..+.-|.+.. -|...++..+++..++
T Consensus 3 htiweviaglvall-tflafgfwlfkylqkk 32 (32)
T 2lx0_A 3 HTIWEVIAGLVALL-TFLAFGFWLFKYLQKK 32 (32)
T ss_dssp SSSHHHHHHHHHHH-HHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHHhcC
Done!