Query 016271
Match_columns 392
No_of_seqs 150 out of 1755
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 10:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016271.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016271hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 21.8 52 0.0038 22.3 4.3 29 330-358 31-59 (100)
2 d1hvwa_ g.3.6.2 (A:) Atracotox 21.1 16 0.0011 17.8 0.8 10 8-17 5-14 (26)
3 d2j9ub1 g.41.11.1 (B:115-161) 14.2 26 0.0019 20.3 0.8 19 4-22 19-40 (47)
4 d2iuba2 f.17.3.1 (A:286-349) M 13.7 1.2E+02 0.0084 18.4 4.1 25 253-277 10-35 (64)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 12.0 1.1E+02 0.0083 16.2 3.7 20 110-129 17-36 (37)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.8 1.2E+02 0.0091 20.5 3.9 22 335-356 42-63 (107)
7 d1e8qa_ g.55.1.1 (A:) Cellulos 8.6 35 0.0026 19.8 0.0 11 3-13 4-14 (46)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 7.2 30 0.0022 23.3 -0.9 23 334-356 24-46 (91)
9 d1d0da_ g.8.1.2 (A:) Anticoagu 7.1 34 0.0025 20.3 -0.5 14 9-22 37-50 (60)
10 d2epra1 g.37.1.1 (A:350-384) P 5.8 70 0.0051 16.8 0.3 13 369-381 23-35 (35)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=21.83 E-value=52 Score=22.34 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 016271 330 WVDLAILFGMVVFYRLVFLGIVKTVEKMK 358 (392)
Q Consensus 330 ~~~~~iL~~~~v~~~~la~~~l~~~~~~k 358 (392)
+....+.+.+.++.-++.+...|++.++.
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 33344555555666667777777776533
No 2
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=21.05 E-value=16 Score=17.78 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=7.5
Q ss_pred CCCCCCCCCc
Q 016271 8 GFPCPTLQNP 17 (392)
Q Consensus 8 G~~cP~~~NP 17 (392)
|-|||-++|-
T Consensus 5 gqpcpynenc 14 (26)
T d1hvwa_ 5 GQPCPYNENC 14 (26)
T ss_dssp TSBCSSTTSB
T ss_pred CCcCCCCccc
Confidence 6788887774
No 3
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=14.18 E-value=26 Score=20.28 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=13.4
Q ss_pred hhhCCCCCCCCCC---chHHHH
Q 016271 4 FALNGFPCPTLQN---PSDHFL 22 (392)
Q Consensus 4 F~~~G~~cP~~~N---PAD~~l 22 (392)
|++.+.++|+..| ||||=|
T Consensus 19 ~~~n~~~~p~C~nCGV~~D~em 40 (47)
T d2j9ub1 19 FTKDTLPTPICINCGVPADYEL 40 (47)
T ss_dssp CCTTCSSCCBCTTTCCBCCHHH
T ss_pred eccCCCCCCcccccCCccCHHH
Confidence 5566777777776 788755
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=13.68 E-value=1.2e+02 Score=18.44 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcccc-cCCCCCCc
Q 016271 253 ITGAGIQGLMILGGGFF-RLPNDLPH 277 (392)
Q Consensus 253 ~~~~~~~~~~~l~sG~~-~~~~~iP~ 277 (392)
...+++..|..+.+|++ .+.+.+|.
T Consensus 10 T~it~iflP~t~i~gifGMN~~~~P~ 35 (64)
T d2iuba2 10 TIIATIFMPLTFIAGIYGMNFEYMPE 35 (64)
T ss_dssp HHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 34455667788888887 56666775
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.00 E-value=1.1e+02 Score=16.22 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016271 110 YWFRLGVYVLLGVGLATVFS 129 (392)
Q Consensus 110 ~~~~~~~~~~~~ll~g~~f~ 129 (392)
+...++...+.++++..-|+
T Consensus 17 Ly~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666665554
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.79 E-value=1.2e+02 Score=20.55 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 016271 335 ILFGMVVFYRLVFLGIVKTVEK 356 (392)
Q Consensus 335 iL~~~~v~~~~la~~~l~~~~~ 356 (392)
+.+.+.+++-++.+...|++.+
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 3333444455566666676544
No 7
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=8.63 E-value=35 Score=19.76 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=8.1
Q ss_pred hhhhCCCCCCC
Q 016271 3 FFALNGFPCPT 13 (392)
Q Consensus 3 yF~~~G~~cP~ 13 (392)
+++++||||=.
T Consensus 4 ws~~lGY~CC~ 14 (46)
T d1e8qa_ 4 WAQSQGYNCCN 14 (46)
T ss_dssp SGGGTTCEECS
T ss_pred cccccCCCccc
Confidence 56888999654
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.21 E-value=30 Score=23.29 Aligned_cols=23 Identities=9% Similarity=-0.141 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016271 334 AILFGMVVFYRLVFLGIVKTVEK 356 (392)
Q Consensus 334 ~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
..++.+.+++.++.+...|+|++
T Consensus 24 i~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 24 LMLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp HTTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHhhheeeecc
Confidence 34445555666666776777654
No 9
>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=7.13 E-value=34 Score=20.27 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.6
Q ss_pred CCCCCCCCchHHHH
Q 016271 9 FPCPTLQNPSDHFL 22 (392)
Q Consensus 9 ~~cP~~~NPAD~~l 22 (392)
.-||+..|-+|||-
T Consensus 37 wicpe~~~g~dyys 50 (60)
T d1d0da_ 37 WICPEDHTGADYYS 50 (60)
T ss_dssp EECTTTCCSCCCCC
T ss_pred eECCccCCCccchh
Confidence 35999999999874
No 10
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83 E-value=70 Score=16.76 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=8.2
Q ss_pred ccccccccCCCCC
Q 016271 369 MKRTTQIMENPYT 381 (392)
Q Consensus 369 ~~~~~~~~~~~~~ 381 (392)
+++.+++.|+|+.
T Consensus 23 rhklshs~ekpys 35 (35)
T d2epra1 23 RHKLSHSGEKPYS 35 (35)
T ss_dssp HHGGGSCSCCCCC
T ss_pred hhhcccCCCCCCC
Confidence 3446777777763
Done!