BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016272
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 197/337 (58%), Gaps = 6/337 (1%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+DW NLGF + Y + ++ G+L+ + +S SS L+YGQ FEG+KAYR
Sbjct: 9 LDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYR 68
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY 179
+DG + LFRP+ NA RLQ A+R+ MP D+FIDA KQ AN+ +VPP G G +LY
Sbjct: 69 TKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLY 128
Query: 180 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 239
+RPLL+G G ++G+ PA EY F +FA PVGNYFK GLAP N ++D++ RA P G G K
Sbjct: 129 LRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAK 188
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGTI 298
NYA L A R FSDV+YLD +EEV S N F I K N TP S +I
Sbjct: 189 VGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPSI 247
Query: 299 LAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIE 357
L +T+ S++ +A G + E + VDEL + E GTA V++P+G + +
Sbjct: 248 LPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHV 307
Query: 358 F--KTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 392
F +T V+ +LY L GIQ G +K +GW +++
Sbjct: 308 FYSETEVGPVTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 204/341 (59%), Gaps = 13/341 (3%)
Query: 65 NLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR D
Sbjct: 33 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 92
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRP 182
G +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G + SLY+RP
Sbjct: 93 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 152
Query: 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242
++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 153 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 212
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTI 298
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP SG++
Sbjct: 213 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 272
Query: 299 LAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVAPVGSITYR 352
L GITR S++++A+D GF VEER I VDE E EVF GTA V+ PV + +
Sbjct: 273 LPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHH 332
Query: 353 GKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 392
G ++ L TL GIQ G D GW +N
Sbjct: 333 DGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 204/341 (59%), Gaps = 13/341 (3%)
Query: 65 NLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR D
Sbjct: 32 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 91
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRP 182
G +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G + SLY+RP
Sbjct: 92 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 151
Query: 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242
++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 152 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 211
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTI 298
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP SG++
Sbjct: 212 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 271
Query: 299 LAGITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVAPVGSITYR 352
L GITR S++++A+D GF VEER I VDE E EVF GTA V+ PV + +
Sbjct: 272 LPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHH 331
Query: 353 GKRIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 392
G ++ L TL GIQ G D GW +N
Sbjct: 332 DGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/339 (39%), Positives = 193/339 (56%), Gaps = 13/339 (3%)
Query: 67 GFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQ 125
GFG D+M ++ + + R+ YG IEL PS+ VL+Y Q +FEG+KAYR DG
Sbjct: 30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 126 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLL 184
+V FR D NA RL++ A R+ +P FI++++Q +K WVP G + +LY+RP +
Sbjct: 90 IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 185 VGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 244
+ P LG+ PA +Y +L+ ASP G YFK G+AP++++V E+ RA PGG G K NY
Sbjct: 150 FATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNY 209
Query: 245 APVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTILA 300
A L A + A G V++LD+V ++ +EE+ NIF + G+ + TP SG++L
Sbjct: 210 AASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLP 269
Query: 301 GITRKSIIEIASDCGFQVEERAIPVDELL------EADEVFCTGTAVVVAPVGSITYRGK 354
GITR S++++A D GF VEER I +DE E EVF GTA V+ PV + +
Sbjct: 270 GITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHGAS 329
Query: 355 RIEFKTGAQ-SVSRELYSTLVGIQTGLIKDNKGWTVEIN 392
G V+ L TL GIQ G D GW +
Sbjct: 330 EFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARLG 368
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 188/337 (55%), Gaps = 8/337 (2%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+DW LGF D Y + ++ G L+ +I L+ S L+YGQ FEG+KAYR
Sbjct: 24 IDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYR 83
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLY 179
DG + LFRPDQNA R++ R+ MP S +QFIDA Q AN+ ++PP G GSLY
Sbjct: 84 CADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLY 143
Query: 180 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 239
+RP ++G G +G+ APE+ F VF PVG YFK GL P N ++ ++ RA P G G K
Sbjct: 144 LRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTN-FITSDYDRAAPHGTGAAK 202
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL--KGNIISTPATSGT 297
NYA L AK R F+DV+YLD +EE + N F + G TP S +
Sbjct: 203 VGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTP-QSPS 261
Query: 298 ILAGITRKSIIEIASD-CGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI 356
IL IT+ S++ +A G +VEE I +DEL + E GTA V+ P+G I +
Sbjct: 262 ILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFH 321
Query: 357 EFKTGAQ--SVSRELYSTLVGIQTGLIKDNKGWTVEI 391
F + ++ V+R LY LVGIQ G + +GW V++
Sbjct: 322 VFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 183/345 (53%), Gaps = 21/345 (6%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 239
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPAT 294
NY L A A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 223 MGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 281
Query: 295 SGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVG 347
G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA VV PV
Sbjct: 282 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVS 341
Query: 348 SITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 389
I Y+G+ I T G + SR + S L IQ G ++ + WT+
Sbjct: 342 DILYKGETIHIPTMENGPKLASR-ILSKLTDIQYG--REERDWTI 383
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 21/345 (6%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 23 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 82
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 83 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 142
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 239
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 143 RPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 202
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPAT 294
NY L A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 203 MGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 261
Query: 295 SGTILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVG 347
G IL G+TR+ I+++A G F+V ER + +D+L A E+F +GTA VV PV
Sbjct: 262 DGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVS 321
Query: 348 SITYRGKRIEFKT---GAQSVSRELYSTLVGIQTGLIKDNKGWTV 389
I Y+G+ I T G + SR L S L IQ G ++ WT+
Sbjct: 322 DILYKGETIHIPTMENGPKLASRIL-SKLTDIQYG--REESDWTI 363
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 167/310 (53%), Gaps = 14/310 (4%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 350
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA VAPV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRIL 324
Query: 351 YRGKRIEFKT 360
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 167/310 (53%), Gaps = 14/310 (4%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 350
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA VAPV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRIL 324
Query: 351 YRGKRIEFKT 360
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 14/310 (4%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 350
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 351 YRGKRIEFKT 360
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 14/310 (4%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 350
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRIL 324
Query: 351 YRGKRIEFKT 360
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 14/310 (4%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 350
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 351 YRGKRIEFKT 360
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 164/310 (52%), Gaps = 14/310 (4%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP SL +RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG-FQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSIT 350
IL G+ R+S++++A G F+V ER I + +LL A EVF +GTA V PV I
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 351 YRGKRIEFKT 360
Y+ + + T
Sbjct: 325 YKDRNLHIPT 334
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 157/323 (48%), Gaps = 21/323 (6%)
Query: 76 MYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNA 135
M T K +F G + R+ ++ S L+YG +FEG++ Y G +V FR ++
Sbjct: 1 MTTKKADYIWF-NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHM 58
Query: 136 IRLQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA 194
RL A+ P S SID+ ++A + N S YIRPL+ +G+
Sbjct: 59 QRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVN 111
Query: 195 PAPEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKA 250
P Y+ ++ A P G Y E L + ++RA P KA NY L
Sbjct: 112 PPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLV 171
Query: 251 ISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEI 310
S A+ G+ + + LD VN + E + N+F +K ++ TP + + L GITR +II++
Sbjct: 172 GSEARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKL 229
Query: 311 ASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSREL 369
A + G +V E+ + + L ADEVF +GTA + PV S+ G ++ E + G V++ +
Sbjct: 230 AKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRCG--PVTKRI 285
Query: 370 YSTLVGIQTGLIKDNKGWTVEIN 392
G+ TG +D GW ++N
Sbjct: 286 QQAFFGLFTGETEDKWGWLDQVN 308
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 157/321 (48%), Gaps = 20/321 (6%)
Query: 78 TMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIR 137
T K ++ + G + R+ ++ S L+YG +FEG++ Y G +V FR ++ R
Sbjct: 1 TTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQR 59
Query: 138 LQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196
L A+ P S SID+ ++A + N S YIRPL+ +G+ P
Sbjct: 60 LHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPP 112
Query: 197 PEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS 252
Y+ ++ A P G Y E L + ++RA P KA NY L S
Sbjct: 113 AGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGS 172
Query: 253 RAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIAS 312
A+ G+ + + LD VN + E + N+F +K ++ TP + + L GITR +II++A
Sbjct: 173 EARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK 230
Query: 313 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRI-EFKTGAQSVSRELYS 371
+ G +V E+ + + L ADEVF +GTA + PV S+ G ++ E + G V++ +
Sbjct: 231 ELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVD--GIQVGEGRCG--PVTKRIQQ 286
Query: 372 TLVGIQTGLIKDNKGWTVEIN 392
G+ TG +D GW ++N
Sbjct: 287 AFFGLFTGETEDKWGWLDQVN 307
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 123/267 (46%), Gaps = 12/267 (4%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G+L + ++ + L+YG G+FEG++AY+ DG +FR ++ RL A+ M
Sbjct: 35 GKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMD 94
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-P 207
P + ++A ++ + + S Y+RP++ LG++ + A+ P
Sbjct: 95 VPFDQETLEAAQRDVVRENK------LESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWP 148
Query: 208 VGNYF-KEGLAPLNLYVEDEFHRATPG-GAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 265
G Y +EGLA F R KA Y + A A G+ + L L
Sbjct: 149 WGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLL 208
Query: 266 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPV 325
D + E S N F++ + TP + + L GITR ++I +A + G +V E+ I
Sbjct: 209 DV--DGYVSEGSGENFFLVNRGKLYTPDLA-SCLDGITRDTVITLAKEAGIEVIEKRITR 265
Query: 326 DELLEADEVFCTGTAVVVAPVGSITYR 352
DE+ ADE F TGTA V P+ + R
Sbjct: 266 DEVYTADEAFFTGTAAEVTPIRELDNR 292
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 130/298 (43%), Gaps = 25/298 (8%)
Query: 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQ 161
S L+YG +FEG++AY G +FR ++ R A+ + M P + ++ +A+K+
Sbjct: 26 SHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKE 84
Query: 162 TALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPE--YTFLVFASPVGNYF-KEGLAP 218
N G S YIRPL LG+ P P +V A G Y +E +
Sbjct: 85 VVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRK 137
Query: 219 LNLYVEDEFHR----ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 274
+ + R PG A K NY A A G + L LD + +
Sbjct: 138 GARLITSSWARFPANVMPGKA---KVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVA 192
Query: 275 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 334
E S N+F ++ +I S L GITR S+I IA D G++V+ D+L ADEV
Sbjct: 193 EGSGENLFFVRDGVIYALEHS-VNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEV 251
Query: 335 FCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 392
F TGTA V PV I +R K A V+ L + TG + +GW +N
Sbjct: 252 FMTGTAAEVTPVSMIDWRPIG---KGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 275 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEV 334
E S N+F++K + TP+ IL GITR+++I++A VEER + V EL EADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 335 FCTGTAVVVAPV 346
F T T+ V PV
Sbjct: 236 FLTHTSAGVVPV 247
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 343 VAPVGSI 349
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 343 VAPVGSI 349
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 343 VAPVGSI 349
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ K SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNTVTKG----SSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 343 VAPVGSI 349
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTSGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
+K I+ T + IL GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 343 VAPVGSI 349
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 26/247 (10%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
+K I+ T + I GITR +I A++ V+E E L+ DE+F T T
Sbjct: 185 GIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSE 244
Query: 343 VAPVGSI 349
+ PV I
Sbjct: 245 ITPVIEI 251
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 255 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 314
K+ GF DV++ D + E ++ + KG+ I TP+ G IL G T+ ++ A++
Sbjct: 201 KSNGFDDVIFTDG---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 315 GFQVEERAIPVDELLEADEVF 335
G++ +E+ + +D+L AD V+
Sbjct: 258 GWRCKEKDLSIDDLFGADSVW 278
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGI 302
NY + A +A G D L+ ++ N ++ E + N+F+++ NI+ TP IL GI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNTEN--HVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 303 TRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 339
TR +I V+E ++ + +AD VF T +
Sbjct: 202 TRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 121/259 (46%), Gaps = 30/259 (11%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
ELS L YG GLFE + A R +L+ +++ RL+ G R+ +P +
Sbjct: 33 ELSVRDRGLAYGDGLFETL-AVRAGTPRLL----ERHLARLEEGCRRLAIPLDTA----- 82
Query: 158 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPAPEYT--FLVFASPVGNY--- 211
A++Q LA + G G + L+V G L G AP E + ++ SP Y
Sbjct: 83 ALRQELLA---FCAALGDG---VAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPER 136
Query: 212 -FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNK 270
+++G+ L+ P AG +K ++ VL A + + G ++ L LD V++
Sbjct: 137 HWQQGV---RLFACRTRLAEQPLLAG-LKHLNRLEQVL-ARAEWSDAGHAEGLMLD-VHE 190
Query: 271 KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLE 330
+ +E V S + +L G +++ P +AG+ R ++E A G + R + + EL
Sbjct: 191 RVVEGVFSNLLLVLDGTLVA-PDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELAT 249
Query: 331 ADEVFCTGTAVVVAPVGSI 349
ADEVF + + PV ++
Sbjct: 250 ADEVFLCNSQFGIWPVRAL 268
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 236 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 295
G+K ++ VL S + + L LDS + + E + N+F KGN++ TP
Sbjct: 137 AGIKHLNRLEQVLIR-SHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLD 193
Query: 296 GTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 346
+ GI R+ I + + +Q+ E ++E L+ADE+ + V PV
Sbjct: 194 QAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 235 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNII----- 289
A VK IS YA + N+ F+D L + + N + E SC F+ +++
Sbjct: 15 APAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPF 74
Query: 290 ---STPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 337
S T G G KSIIE + G E +A+ DE ++ ++F +
Sbjct: 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 125
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 239 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST---PATS 295
K IS YA + N+ F+D L + + N + E SC F+ +++ + P TS
Sbjct: 1 KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITS 60
Query: 296 GTILAGI-----TRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 337
GI KSIIE + G E +A+ DE ++ ++F +
Sbjct: 61 MKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTS 107
>pdb|1USY|H Chain H, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 278 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 337
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 338 GTAVVVAPVGSITYRGKRIEFKTGAQSV 365
T VVV PV T R K + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREKVVSFLEKLQEV 197
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 189 PILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 238
PI G+ P Y L P+G + + P VEDE + GG GV
Sbjct: 2 PIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGV 51
>pdb|1DNV|A Chain A, Parvovirus (Densovirus) From Galleria Mellonella
Length = 437
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 281 IFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTA 340
IF L N+I P +GT ++ + + C ++ + +P+ ++ G+
Sbjct: 47 IFGLANNVIG-PTGTGT-------TAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSR 98
Query: 341 VVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVE 390
VV V + +R RI F+T + + + + +QT + + GW +
Sbjct: 99 VVECNV-KVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGIN 147
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 326 DELLEADEVFCTGTAVVVAPVGSIT 350
+++LE D + C GT++ VAPV I
Sbjct: 389 EDILECDLLICIGTSLKVAPVSEIV 413
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 326 DELLEADEVFCTGTAVVVAPVGSIT 350
+++LE D + C GT++ VAPV I
Sbjct: 251 EDILECDLLICIGTSLKVAPVSEIV 275
>pdb|1O64|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O64|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 279 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 338
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 125 CRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVIR 171
Query: 339 TAVVVAPVGSITYRGKRIEFKTGAQSV 365
T VVV PV T R + + F Q V
Sbjct: 172 THVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1USY|E Chain E, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|F Chain F, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
pdb|1USY|G Chain G, Atp Phosphoribosyl Transferase (Hisg:hisz) Complex From
Thermotoga Maritima
Length = 208
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 278 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 337
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 123 HCRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVI 169
Query: 338 GTAVVVAPVGSITYRGKRIEFKTGAQSV 365
T VVV PV T R + + F Q V
Sbjct: 170 RTHVVVNPVSYRTKREEVVSFLEKLQEV 197
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 294 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD--EVFCTGTAVVVAP 345
T+ +LA R I E A + G + + I VDE ++ + VF TG A +AP
Sbjct: 261 TNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAP 314
>pdb|1O63|A Chain A, Crystal Structure Of An Atp Phosphoribosyltransferase
pdb|1O63|B Chain B, Crystal Structure Of An Atp Phosphoribosyltransferase
Length = 219
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 279 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 338
C I LKG++ P +AG++ +I ++ G ++E + + DE+F
Sbjct: 125 CRIIPLKGSVELAP------IAGLS--DLIVDITETGRTLKENNLEI-----LDEIFVIR 171
Query: 339 TAVVVAPVGSITYRGKRIEFKTGAQSV 365
T VVV PV T R + + F Q V
Sbjct: 172 THVVVNPVSYRTKREEVVSFLEKLQEV 198
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 279 CNIFILKGNIISTPATSGTILAGI 302
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 279 CNIFILKGNIISTPATSGTILAGI 302
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,961,533
Number of Sequences: 62578
Number of extensions: 525716
Number of successful extensions: 1157
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 45
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)