RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016272
(392 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 587 bits (1516), Expect = 0.0
Identities = 250/377 (66%), Positives = 302/377 (80%), Gaps = 9/377 (2%)
Query: 18 QSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMY 77
+ V S + S A +S S+Y++ +DWDNLGFGL P DYMY
Sbjct: 34 SNSSVSSNPISSKAISLTRCDAVSS-------SSYTEVTELADIDWDNLGFGLVPTDYMY 86
Query: 78 TMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAI 136
MKC+ D F KG L R+G IELSPS+GVLNYGQGLFEG+KAYRKEDG ++LFRP++NAI
Sbjct: 87 IMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAI 146
Query: 137 RLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196
R++ GAERMCMP+P+++QF++AVK+T LANKRWVPPPGKGSLYIRPLL+GSG +LGLAPA
Sbjct: 147 RMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPA 206
Query: 197 PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKN 256
PEYTFL++ SPVGNYFKEG+AP+NL VE+EFHRATPGG GGVK I NYA VLKA S AK
Sbjct: 207 PEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKA 266
Query: 257 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGF 316
+G+SDVLYLD V+KK LEEVSSCNIFI+K N+ISTPA GTIL GITRKSII++A GF
Sbjct: 267 KGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQGF 326
Query: 317 QVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEF-KTGAQSVSRELYSTLVG 375
QVEER + VDELLEADEVFCTGTAVVV+PVGSITY+GKR+ + + G +VS++LY+ L
Sbjct: 327 QVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTS 386
Query: 376 IQTGLIKDNKGWTVEIN 392
+Q GLI+DN WTVE++
Sbjct: 387 LQMGLIEDNMNWTVELS 403
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 546 bits (1408), Expect = 0.0
Identities = 262/364 (71%), Positives = 316/364 (86%), Gaps = 4/364 (1%)
Query: 32 FCRYTSQAAASLQQDCEPSAYS--DDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEK 88
F +Y +QAA++L+++ + Y DD AD +DWDNLGFGL PADYMY MKCS F +
Sbjct: 26 FAKYNAQAASALREERKKPLYQNGDDVYAD-LDWDNLGFGLNPADYMYVMKCSKDGEFTQ 84
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G LS YG I+LSPS+GVLNYGQ ++EG KAYRKE+G+L+LFRPD NAIR++ GAERM MP
Sbjct: 85 GELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMP 144
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208
SPS+DQF++AVKQTALANKRWVPP GKG+LYIRPLL+GSGPILGL PAPEYTF+V+ASPV
Sbjct: 145 SPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPV 204
Query: 209 GNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 268
GNYFKEG+A LNLYVE+E+ RA PGGAGGVK+I+NYAPVLKA+SRAK+RGFSDVLYLDSV
Sbjct: 205 GNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSV 264
Query: 269 NKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDEL 328
KK LEE SSCN+F++KG ISTPAT+GTIL GITRKS++EIASD G+QV E+A+ VDE+
Sbjct: 265 KKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEV 324
Query: 329 LEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWT 388
++ADEVFCTGTAVVVAPVG+ITY+ KR+E+KTG +SV ++L S LVGIQTGLI+DNKGW
Sbjct: 325 MDADEVFCTGTAVVVAPVGTITYQEKRVEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWV 384
Query: 389 VEIN 392
+IN
Sbjct: 385 TDIN 388
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 503 bits (1297), Expect = e-180
Identities = 207/339 (61%), Positives = 273/339 (80%), Gaps = 2/339 (0%)
Query: 55 DESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLF 113
DE ++ W+ LGF L P DYMY KC + F +G++ YG I +SP +G+LNYGQGLF
Sbjct: 14 DEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLF 73
Query: 114 EGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP 173
EG+KAYR EDG++ LFRPDQNA+R+QTGA+R+CM PS++QF++AVKQT LANK+WVPPP
Sbjct: 74 EGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPP 133
Query: 174 GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG 233
GKG+LYIRPLL+GSG +LG+APAPEYTFL++ASPVGNY K + LNL V+ + RA G
Sbjct: 134 GKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRRAHSG 192
Query: 234 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPA 293
G GGVK+ +NY+PV+K++ AK+ GFSDVL+LD+ KN+EE+S+CNIFILKGNI+STP
Sbjct: 193 GTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPP 252
Query: 294 TSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRG 353
TSGTIL G+TRKSI E+A D G+QVEER + VDELLEA+EVFCTGTAVVV V ++T+
Sbjct: 253 TSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHD 312
Query: 354 KRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGWTVEIN 392
K+++++TG +++S +L+ L IQ G+++D KGW VEI+
Sbjct: 313 KKVKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 472 bits (1216), Expect = e-167
Identities = 237/386 (61%), Positives = 290/386 (75%), Gaps = 4/386 (1%)
Query: 7 MIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNL 66
M CL S + S K F + ++AAAS+ ++ A +DE +DWD L
Sbjct: 1 MALRRCLPQSSTT---SSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKL 57
Query: 67 GFGLTPADYMYTMK-CSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQ 125
GF L D+M+ K C + FE+G LSRYG IEL+P++G+LNYGQGL EGMKAYR EDG+
Sbjct: 58 GFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGR 117
Query: 126 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 185
++LFRP+ NA+R++ GAERMCM SPS+ QFI+ VKQT LAN+RWVPPPGKGSLY+RPLL
Sbjct: 118 ILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLF 177
Query: 186 GSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYA 245
GSG LG+A APEYTFLVF SPV NYFKEG A LNLYVE+ RA GG GGVKAISNY
Sbjct: 178 GSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYG 237
Query: 246 PVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRK 305
PVL+ + RAK+RGFSDVLYLD+ KN+EEVS+ NIF++KGNII TPATSGTIL GITRK
Sbjct: 238 PVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRK 297
Query: 306 SIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSV 365
SIIEIA D G++VEER +PV+EL EA+EVFCTGTA VA VGSIT++ R E+K G V
Sbjct: 298 SIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIV 357
Query: 366 SRELYSTLVGIQTGLIKDNKGWTVEI 391
+++L S L+GIQTG I+D K W ++I
Sbjct: 358 TQQLRSILLGIQTGSIQDTKDWVLQI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 447 bits (1152), Expect = e-157
Identities = 156/339 (46%), Positives = 209/339 (61%), Gaps = 10/339 (2%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 121
DW NLGFG D+M + + + RL YG +EL P++ VL+YGQ +FEG+KAYR
Sbjct: 18 DWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRH 77
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLYI 180
+DG +VLFRPD NA RLQ A+R+ MP + F++AVKQ A++ WVPP G+G SLY+
Sbjct: 78 KDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYL 137
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240
RP ++ + P LG+ PA EY F V ASPVG YFK G+ P++++V DE+ RA PGG G K
Sbjct: 138 RPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKV 197
Query: 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGTIL 299
NYA L A + AK +G VLYLD+V +EEV N F I K + TP SG+IL
Sbjct: 198 GGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTV-TPPLSGSIL 256
Query: 300 AGITRKSIIEIASDCGFQVEERAIPVDELLEA------DEVFCTGTAVVVAPVGSITYRG 353
GITR S++++A D G VEER + +DE E F GTA V+ P+G I Y+
Sbjct: 257 PGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKD 316
Query: 354 KRIEFKTG-AQSVSRELYSTLVGIQTGLIKDNKGWTVEI 391
K G V+++LY L GIQ G ++D GW V++
Sbjct: 317 KEFVIGDGEVGPVTQKLYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 371 bits (954), Expect = e-129
Identities = 140/282 (49%), Positives = 176/282 (62%), Gaps = 3/282 (1%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
L P++ L+YGQ +FEG+KAYR DG++VLFRPD+NA RL A R+ +P S+++FID
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 158 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA 217
A+K+ + WVP G SLYIRP + G+ P LG++PA EY F VFASPVG YFK G
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 218 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVS 277
++ V F RA PGG G KA NYA L A A +G+ L+LD + EV
Sbjct: 121 GVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-AHGYVAEVG 178
Query: 278 SCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCT 337
+ NIF +K + TP G+IL GITR SI+E+A D G +VEER I DEL EADEVF T
Sbjct: 179 TMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238
Query: 338 GTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTG 379
GTA VV PVG I YRGK V+++LY L IQ G
Sbjct: 239 GTAAVVTPVGEIDYRGKEPGE-GEVGPVTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 342 bits (880), Expect = e-117
Identities = 154/310 (49%), Positives = 198/310 (63%), Gaps = 7/310 (2%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
GRL+ YG + L P S VL+YGQ FEG+KAYR DG +VLFRPD NA RL+ A R+ MP
Sbjct: 4 GRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMP 63
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKG-SLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
+ F++A++Q ANK WVPP G G SLY+RP ++G+ P LG+ PAPEY F VFASP
Sbjct: 64 ELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASP 123
Query: 208 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267
VG YFK GLAP++++V E+ RA PGG G VK NYA L A ++A +G V+YLD
Sbjct: 124 VGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP 183
Query: 268 VNKKNLEEVSSCNIF-ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVD 326
V +EEV + N F I + TP SG+IL GITR S++++A D G +VEER I +D
Sbjct: 184 VEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDID 243
Query: 327 ELLEADE----VFCTGTAVVVAPVGSITYRGKRIEFKTGAQS-VSRELYSTLVGIQTGLI 381
EL E VF GTA V+ PVG I + GK + F +G V++ LY L IQ G
Sbjct: 244 ELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQYGDF 303
Query: 382 KDNKGWTVEI 391
+D GW VE+
Sbjct: 304 EDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 262 bits (672), Expect = 2e-86
Identities = 111/272 (40%), Positives = 145/272 (53%), Gaps = 21/272 (7%)
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163
L+YG G+FEG++A + LFR D++ RL A+R+ +P P ++ +A+K+
Sbjct: 3 GLHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELV 57
Query: 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNL 221
AN SLYIRPLL LG+AP P E TF+VFASPVG Y K G + L
Sbjct: 58 AANN-------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRL 110
Query: 222 YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 281
+ RA PGG G K + A A G + L LD + E S+ N+
Sbjct: 111 ITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNV 167
Query: 282 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAV 341
FI+K + TP G IL GITR S+IE+A + G +VEER I +DEL ADEVF TGTA
Sbjct: 168 FIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAA 227
Query: 342 VVAPVGSITYRGKRIEFKTGAQSVSRELYSTL 373
V PV I RG + K G V+R+L L
Sbjct: 228 EVTPVTEIDGRGI-GDGKPG--PVTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 239 bits (612), Expect = 5e-77
Identities = 112/297 (37%), Positives = 154/297 (51%), Gaps = 22/297 (7%)
Query: 88 KGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCM 147
G L +LS L+YG G+FE ++AY + LFR D++ RL+ A+R+ +
Sbjct: 7 NGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSAKRLGL 61
Query: 148 PSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P P ++ I+ + Q LA VP LYIRPL+ G G LG+ A E T +V ASP
Sbjct: 62 PRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAASP 116
Query: 208 VGNYFKEGLA--PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 265
VG Y K G + L + R P G G K NY + A AK G + L L
Sbjct: 117 VGAYLKGGRLEKGVVLVISSPV-RRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLL 175
Query: 266 DSVNKKNLEEVSSCNIFILKGN-IISTPATSGTILAGITRKSIIEIASDCGFQVEERAIP 324
D + E + N+F +KG+ ++ TP SG IL GITR S++E+A + G VEER I
Sbjct: 176 DE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERPIT 233
Query: 325 VDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLVGIQTGLI 381
+++L +ADEVF T TA V PVG I R + G V+++L L IQ G I
Sbjct: 234 LEDLKQADEVFLTNTAAGVTPVGLIDGR----VGQPG--PVTKKLRELLTDIQYGEI 284
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 146 bits (372), Expect = 5e-41
Identities = 98/300 (32%), Positives = 140/300 (46%), Gaps = 45/300 (15%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG G+FEG++AY G + FR ++ RL A+ + M P S+D+ ++A ++
Sbjct: 30 LHYGTGVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT---FLVFASPVGNYF-KEGLAP- 218
N S YIRPL+ VG GL P + A P G Y +E L
Sbjct: 89 KNNL-------KSAYIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAYLGEEALEKG 138
Query: 219 LNLYVEDEFHRA----TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 274
+ + V + R P A KA NY + A + A+ G+ + L LD
Sbjct: 139 IRVKVS-SWTRHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDVEGY---- 190
Query: 275 EVSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA 331
VS NIFI++ ++ TP + +IL GITR ++I +A D G +V ER I DEL A
Sbjct: 191 -VSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIA 249
Query: 332 DEVFCTGTAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 387
DEVF TGTA V P+ + R GKR G ++ +L S I G + W
Sbjct: 250 DEVFFTGTAAEVTPIREVDGRQIGNGKR-----G--PITEKLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 145 bits (369), Expect = 7e-41
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 28/293 (9%)
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163
L+YG G+FEG++AY + G +FR ++ RL A+ M P S ++ ++A ++T
Sbjct: 20 ALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETL 78
Query: 164 LANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGLAPLN 220
N S YIRPL+ G G LGL P Y ++ A P G Y E
Sbjct: 79 RKN-------NLRSAYIRPLVFRGDGD-LGLNPRAGYKPDVIIAAWPWGAYLGEEALEKG 130
Query: 221 LYVE-DEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ + + R P KA NY L A S A+ G+ + + LD + + E S
Sbjct: 131 IDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSG 188
Query: 279 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 338
NIFI+K ++ TP + +IL GITR ++I +A + G +V E+ I +EL ADE F TG
Sbjct: 189 ENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTG 248
Query: 339 TAVVVAPVGSITYR----GKRIEFKTGAQSVSRELYSTLVGIQTGLIKDNKGW 387
TA + P+ + R G+R V+++L + TG +D GW
Sbjct: 249 TAAEITPIREVDGRKIGNGRR-------GPVTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 133 bits (336), Expect = 7e-37
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 129 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188
F D++ RL+ A+ + SI+ +++ AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 189 PILGLAPAPEYTFLVFASPVGNYFK-EGLAPLN-LYVEDEFHRATPGGAGGVKAISNYAP 246
GL+P ++ + L L + G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 247 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKS 306
VL A+ A+ GF D L LD N+ E S+ NIFI+KG + TP IL GITR++
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQA 169
Query: 307 IIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 349
++++A + G +VEER + + +L EADE F T + V PV SI
Sbjct: 170 LLDLAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 121 bits (306), Expect = 4e-32
Identities = 71/258 (27%), Positives = 112/258 (43%), Gaps = 47/258 (18%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E ++ Y +G F D++ RL A+ + + P + ++ + +++ N
Sbjct: 23 FGDGVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDE 226
+ G+G +YI+ + G GP P +V + L P L
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQPLP-----LPPAELL---- 122
Query: 227 FHRATPGGAGGVKAIS--------------NYAP-VLKAISRAKNRGFSDVLYLDSVNKK 271
GV+ I+ N VL AK G + + LD+
Sbjct: 123 --------EKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQ-EAKEAGADEAILLDADG-- 171
Query: 272 NLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEA 331
+ E SS N+FI+K ++ TP IL GITR ++IE+A + G VEER ++EL A
Sbjct: 172 LVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTA 231
Query: 332 DEVFCTGTAVVVAPVGSI 349
DEVF T T V PV I
Sbjct: 232 DEVFLTSTTAEVMPVVEI 249
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 111 bits (279), Expect = 2e-28
Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 32/250 (12%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANK 167
YG G+FE M+A DG+L L D + RL+ A R+ +P P + + A++ AN
Sbjct: 6 YGDGVFETMRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN- 59
Query: 168 RWVPPPGKGSLYIRPLLV-GSGPILGLAPA--PEYTFLVFASPVGNYFKE-----GLAPL 219
+G IR +L G G G AP+ P V P+ +++ P+
Sbjct: 60 ----DIDEG--RIRLILSRGPGG-RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPV 112
Query: 220 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 279
L G+K + NY + A A++RG + L+LD+ + E ++
Sbjct: 113 RL--------GEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDG--RVIEGTAS 161
Query: 280 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 339
N+F +K + TP+ LAGITR+ +IE+A+ G+ V+ER + +++LL ADE F T +
Sbjct: 162 NLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNS 221
Query: 340 AVVVAPVGSI 349
+ VAPV +I
Sbjct: 222 LLGVAPVTAI 231
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 105 bits (264), Expect = 7e-26
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 173 PGKGSLYIRPLLVG-SGPILGLAPAPEYT---FLVFASPVGNY--FKEGLAPLNLYVEDE 226
+LYIRP+ G G+AP PE T + +P+ F L+P
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSP-------- 138
Query: 227 FHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 285
F R T A KA Y +A+ A++RGF + L LD + N+ E ++ N+F++K
Sbjct: 139 FRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVK 196
Query: 286 GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVVVAP 345
++ TP +GT L GITR+ +I + + G V E + ++ LEADEVF TG V P
Sbjct: 197 DGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVP 256
Query: 346 V 346
V
Sbjct: 257 V 257
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 101 bits (255), Expect = 1e-24
Identities = 84/275 (30%), Positives = 118/275 (42%), Gaps = 76/275 (27%)
Query: 104 GVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQT 162
G L YG G+FEG++AY +G +FR ++ RL A+ + + P S ++ + V +T
Sbjct: 25 GFL-YGDGVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET 78
Query: 163 ALANKRWVPPPGKGSLYIRPLL---VGSGPILGLAP--APEYTFLVFASPVGNYFKEGLA 217
N YIR ++ VG LGL P P+ T + A P+G Y E
Sbjct: 79 LRKN-------NLRDAYIRLVVSRGVGD---LGLDPRKCPKPTVVCIAEPIGLYPGE--- 125
Query: 218 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVL--------YLDSV- 268
LY G LK I+ + R D L YL+++
Sbjct: 126 ---LY--------EKG--------------LKVITVSTRRNRPDALSPQVKSLNYLNNIL 160
Query: 269 -----NKKNLEE---------VSSC---NIFILKGNIISTPATSGTILAGITRKSIIEIA 311
N ++E V+ NIFI+K + TP T L GITR ++IEIA
Sbjct: 161 AKIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIA 220
Query: 312 SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 346
+ G V E + +L ADEVF TGTA V PV
Sbjct: 221 KELGIPVREELFTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 101 bits (255), Expect = 1e-24
Identities = 89/283 (31%), Positives = 135/283 (47%), Gaps = 40/283 (14%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+Y +FEG +AY G++ F+ +++ RL+ AE + P S+ + IDA K+ L
Sbjct: 32 LHYASSVFEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAE-IDAAKKETL 85
Query: 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF----KEGLAPL 219
A Y+RP+ ++G++ L A+ +YF K L
Sbjct: 86 AANGLT------DAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRL 139
Query: 220 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS--RAKNRGFSDVLYLDSVNKKNLEEV 276
++ ++ R P A KA Y ++ IS A+ +G++D L LD + + E
Sbjct: 140 DI---AKWRRPDPETAPSAAKAAGLY--MICTISKHAAEAKGYADALMLDY--RGYVAEA 192
Query: 277 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFC 336
+ NIF +K +I TP T L GITR+++IE+A G +V ER I +EL E F
Sbjct: 193 TGANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFL 251
Query: 337 TGTAVVVAPVGSI-TYRGKRIEFKTGAQSVSREL---YSTLVG 375
TGTA V PV I YR F GA ++R+L Y LV
Sbjct: 252 TGTAAEVTPVSEIGEYR-----FTPGA--ITRDLMDDYEALVR 287
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 82.3 bits (204), Expect = 1e-17
Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 38/254 (14%)
Query: 109 GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKR 168
G G+FE + DG+ + RL A + +P P +D++ AV LA +
Sbjct: 38 GDGVFETLLVR---DGRPCNLEA--HLERLARSAALLDLPEPDLDRWRRAV---ELAIEE 89
Query: 169 WVPPPGKGSL---YIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK----EGLAPLNL 221
W P + +L Y R G P T V SPV EG++ + L
Sbjct: 90 WRAPEDEAALRLVYSRGRESGGAP----------TAWVTVSPVPERVARARREGVSVITL 139
Query: 222 ---YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS---VNKKNLEE 275
Y D RA P G K +S YA + A+ A RG DV++ + V LE
Sbjct: 140 DRGYPSDAAERA-PWLLAGAKTLS-YAVNMAALRYAARRGADDVIFTSTDGYV----LEG 193
Query: 276 VSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVF 335
+S + I + + TP IL G T+ ++ E+A + G+ E RA+ +L AD V+
Sbjct: 194 PTS-TVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVW 252
Query: 336 CTGTAVVVAPVGSI 349
+ + A V ++
Sbjct: 253 LVSSVRLAARVHTL 266
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 78.0 bits (193), Expect = 2e-16
Identities = 76/305 (24%), Positives = 113/305 (37%), Gaps = 77/305 (25%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
LS S YG G F R DGQ+ L ++ RLQ ER+ +P Q
Sbjct: 11 SLSVSDRSTQYGDGCFTTA---RVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQ 65
Query: 158 AVKQTALANKRWVPPPGKGSLYI---RPLLVGSG-----------P--ILGLAPAPEYTF 201
+KQ A G L + R GSG P IL ++P P +
Sbjct: 66 EMKQLAAEL-------ENGVLKVIISR----GSGGRGYSPAGCAAPTRILSVSPYPAHYS 114
Query: 202 L-------VFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRA 254
+ P + G PL G+K ++ VL +
Sbjct: 115 RWREQGITLALCPT----RLGRNPL---------------LAGIKHLNRLEQVL-IRAEL 154
Query: 255 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 314
+ + L LDS + E + N+F KG ++ TP +AG+ R+ I+E+ +
Sbjct: 155 EQTEADEALVLDSEG--WVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQS 212
Query: 315 GFQVEERAIPVDELLEADEVFCTGTAVVVAPV---GSITYRGKRIEFKTGAQSVSRELYS 371
G+ V E ++ELL+ADEVF + + V PV G +Y S L
Sbjct: 213 GYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSYS-------------SGTLTR 259
Query: 372 TLVGI 376
L +
Sbjct: 260 YLQPL 264
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 74.2 bits (183), Expect = 4e-15
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 256 NRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 315
N + L LD+ N+ E ++ NIF KGN + TP S +AG+ R+ ++ + G
Sbjct: 154 NSEADEALVLDTDG--NVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALG 211
Query: 316 FQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 349
+++EE ++ELL ADEVF T + + V PV +I
Sbjct: 212 YEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
Score = 38.3 bits (90), Expect = 0.004
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
++S S L YG G F K +G++ L D + RLQ A R+ +P P D +
Sbjct: 9 QISVSDRGLQYGDGCFTTAKVR---NGKIELL--DLHLERLQDAAARLGIPLPDWDALRE 63
Query: 158 AVKQTAL 164
+ Q A
Sbjct: 64 EMAQLAA 70
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 73.6 bits (181), Expect = 9e-15
Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 48/277 (17%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G+L + ++ +G G++E ++ Y +G LF +++ RL A ++ +
Sbjct: 6 GQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NG--KLFTVNEHIDRLYASAAKIRID 60
Query: 149 SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P + ++ + + N G +Y + + G P PA ++ A
Sbjct: 61 IPYTKEELHQLLHELVEKNNL-----NTGHVYFQ-VTRGVAPRNHQFPAGTVKPVITA-- 112
Query: 208 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS--------------NYAPVLKAISR 253
Y KE P E+ GVKAI+ N + A
Sbjct: 113 ---YTKEVPRP-----EENL-------EKGVKAITVEDIRWLRCDIKSLNLLGNVLAKQE 157
Query: 254 AKNRG-FSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIAS 312
A +G + +L+ + E SS N++ +K ++ T + IL GITR I+ A
Sbjct: 158 AHEKGAYEAILHRGGT----VTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAE 213
Query: 313 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSI 349
+ G V+E +ELL ADEVF + T + PV I
Sbjct: 214 ENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEI 250
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 72.7 bits (178), Expect = 2e-14
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 29/254 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
YG G+FEG+++Y +F ++ RL A+ + + P ++D+ +AV QT N
Sbjct: 29 YGDGVFEGIRSYGGN-----VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 167 KRWVPPPGKGSLYIRPLLVGSGP-ILGLAP--APEYTFLVFASPVG----NYFKEGLAPL 219
YIR L+V G LGL P + + ++ A + ++ GL+ +
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVV 135
Query: 220 NLYVEDEFHRATPGGAG-GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
++ R TP +K+++ VL I A G + L L+ + + E S
Sbjct: 136 SVASR----RNTPDALDPRIKSMNYLNNVLVKI-EAAQAGVLEALMLN--QQGYVCEGSG 188
Query: 279 CNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTG 338
N+F++K + TP + L GITR S+IE+ EER ++ ADEVF TG
Sbjct: 189 DNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTG 248
Query: 339 TAVVVAPVGSITYR 352
TA + PV + R
Sbjct: 249 TAAELIPVVKVDSR 262
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 70.0 bits (172), Expect = 2e-13
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 275 EVSSCNIFILK--GNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEAD 332
E +S N +I+ G +++ PA + IL GITR ++I++A + G +VEER + E A
Sbjct: 181 EGASSNAWIVTKDGKLVTRPADNF-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAR 239
Query: 333 EVFCTGTAVVVAPVGSI 349
E F T + V PV I
Sbjct: 240 EAFITAASSFVFPVVQI 256
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 68.1 bits (167), Expect = 6e-13
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 280 NIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGT 339
N+F +KG+I+ TP+ IL GITR +I++ + G +V+E +ELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 340 AVVVAP---VGSITYRGKR 355
+ P + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 51.6 bits (123), Expect = 3e-07
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 237 GVKAIS--------------NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF 282
GV+AIS N P + A ++A+ +G + L+ V + E S N F
Sbjct: 134 GVRAISEPDTRWLRCDIKSLNLLPNILAATKAERKGCKEALF---VRNGTVTEGSHSNFF 190
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVEERAIPVDELLEADEVFCTGTAVV 342
++K + T + IL GI R+ ++ +A V+E V ++ +ADE F TGT +
Sbjct: 191 LIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIE 250
Query: 343 VAPV 346
+ P+
Sbjct: 251 ILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 37.7 bits (88), Expect = 0.007
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI-FILKGNIISTPATSGTILAG 301
NY P + A+ RG ++LD + + E + N+ F+ + P IL+G
Sbjct: 188 NYLPNALSQMEAEERGAFAGIWLD--EEGFVAEGPNMNVAFLTNDGELVLPPFD-KILSG 244
Query: 302 ITRKSIIEIA-----SDCGFQVEERAIPVDELLEADEVFCTGTAVVVAPV 346
T + ++E+A V++R I V+E ADE+ G+ V V P+
Sbjct: 245 CTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPI 294
>gnl|CDD|100037 cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup
1 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 298
Score = 32.6 bits (75), Expect = 0.34
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 293 ATSGTILAGITRKSIIEIASDCGFQVEERAIPVDE 327
AT G IL + + AS G ++E+ IP+ +
Sbjct: 216 ATEGGILGALWE---VAEASGVGLRIEKDKIPIRQ 247
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.8 bits (72), Expect = 0.66
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 2 MRPATMIRNACLRNFSQSLR------------VGSAFLKSGDFCRYTSQAAASLQQDCEP 49
+ P T RN ++SLR +A LK R+TS A+L+Q EP
Sbjct: 423 LSPRTTRRNMLATELTESLRRNLLWERQQKSATANAVLKR----RHTSHDVANLKQYPEP 478
Query: 50 SAYSDDESADHMDWD 64
D+ + W+
Sbjct: 479 PGAKKDKDVKNSSWN 493
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 30.7 bits (70), Expect = 0.83
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 34/211 (16%)
Query: 128 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187
R D++ RL+ A + P AV+ P L +R L
Sbjct: 18 FPRLDRHLARLERSARALGFPCD-----PAAVRAKLAEAVAGAQGP----LRLRLTLARD 68
Query: 188 GPI-LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAP 246
G + + AP P P ++ +A L D R K + A
Sbjct: 69 GRLTVETAPLP-------PLPPDTVWRVAIARTRLDSADPLLR--------YKT-TRRAA 112
Query: 247 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFI-LKGNIISTPATSGTILAGITRK 305
A + +V+ L+ + + E + N+F+ G +++TP S +L G+ R
Sbjct: 113 YDAARAELPPAEADEVILLNE--RGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRA 170
Query: 306 SIIEIASDCGFQVEERAIPVDELLEADEVFC 336
++ + E + VD+L A ++
Sbjct: 171 ELL-----DAGRAREAVLTVDDLKSARAIWV 196
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 28.8 bits (65), Expect = 2.1
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 257 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS-GTILAG---ITRKSIIEIAS 312
+ + D L L + K + +F+ K +++ P L G I RK+
Sbjct: 23 QSYLDPLLLSLLLPKRGRPL----VFVAKDELLNLPLLGWLMRLLGCIFIDRKNA----- 73
Query: 313 DCGFQVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYST 372
++ A ++ L+E + G V++ P G+ + G+ + FK GA ++RE
Sbjct: 74 ------KDAANTLEYLVE---LLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 373 LV 374
+V
Sbjct: 125 IV 126
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 30.0 bits (67), Expect = 2.1
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 108 YGQG----------LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 154
YGQG ++ G + R+ED Q+ L NA +L T + P I
Sbjct: 149 YGQGFPSFLRNKVFIYRGKEYERREDFQMQLMSQFPNAEKLNTTS----APGDDIKN 201
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 29.4 bits (66), Expect = 3.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 64 DNLGFGLTP--ADYMYTMKCSNDYFEKGRLSRYG 95
D LGFG +P AD +YT++ + E+ L RY
Sbjct: 239 DLLGFGRSPKPADSLYTLREHLEMIERSVLERYK 272
>gnl|CDD|226222 COG3698, COG3698, Predicted periplasmic protein [Function unknown].
Length = 250
Score = 28.9 bits (65), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 191 LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 238
L A + L+FA G Y APL LYVE+ + AGG
Sbjct: 69 LLAALNKQGQSLLFAMNGGMY-HPDYAPLGLYVENGKEQVPLNTAGGE 115
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 73 and 85 amino acids
in length.
Length = 83
Score = 27.2 bits (60), Expect = 4.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 183 LLVGSGPILGLAPAPEYTFL 202
LL+G+ ILGL AP Y F+
Sbjct: 59 LLLGTASILGLLAAPAYFFI 78
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 27.7 bits (62), Expect = 4.3
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 257 RGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGF 316
+ F D L L ++ L F+ K + P G +L + +I
Sbjct: 8 QSFLDPLVLSAL----LPRKLGRVRFVAKKELFYVPLL-GWLLRLL--GAI-------FI 53
Query: 317 QVEERAIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFKTGAQSVSRELYSTLV 374
L EA E+ G +++ P G+ + GK + FK GA ++ E +V
Sbjct: 54 DRSNGRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIV 111
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 28.8 bits (65), Expect = 6.4
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 337 TGTAVVVAPVGSITYRG--------KRIE--FKTGAQSVSREL 369
T TAVVVA GS TY G R + F G SVS L
Sbjct: 253 TATAVVVA-TGSRTYFGSLAKSIVGTRAQTAFDRGVNSVSWLL 294
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 28.7 bits (64), Expect = 8.0
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 266 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSI--IEIASDCGFQVEER-- 321
D V+KK +E ++ + LKG PA + +L GITR +I I S FQ +
Sbjct: 2788 DLVSKKLFKEENA-RVIALKGE----PAIAEPVLLGITRAAIGSDSIISAASFQETTKVL 2842
Query: 322 -----AIPVDELLEADEVFCTGTAVVVAPVGSITYRGKRIEFK 359
A+ D L + E G + PVG+ Y+ K+I +
Sbjct: 2843 TEASIAMKKDFLEDLKENVVLGRMI---PVGTGMYKNKKIVLR 2882
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP.
Length = 293
Score = 27.8 bits (63), Expect = 8.8
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 309 EIA--SDCGFQVEERAIPVD-------ELLEAD--EVFCTGTAVVVAP 345
EIA S G ++EE AIPV E+L D + G V + P
Sbjct: 220 EIARASGVGIEIEEEAIPVREEVRGACEMLGLDPLYLANEGKFVAIVP 267
>gnl|CDD|237973 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 28.1 bits (63), Expect = 9.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 96 KIELSPSSGVLNYGQGLFEG---------MKAYRKEDGQLVLFRP 131
K +L+ S ++N+G L+EG M A ++ +LV+F P
Sbjct: 191 KRDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.400
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,245,934
Number of extensions: 1997095
Number of successful extensions: 1668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1621
Number of HSP's successfully gapped: 52
Length of query: 392
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 293
Effective length of database: 6,546,556
Effective search space: 1918140908
Effective search space used: 1918140908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)