Query 016275
Match_columns 392
No_of_seqs 155 out of 1758
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 4.2E-52 9.2E-57 426.7 34.8 345 1-357 255-615 (617)
2 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-51 2.7E-56 452.9 33.1 351 1-357 299-696 (1394)
3 PLN03140 ABC transporter G fam 100.0 4.4E-51 9.6E-56 447.2 33.1 342 1-358 1113-1469(1470)
4 PLN03211 ABC transporter G-25; 100.0 6E-50 1.3E-54 410.9 32.2 341 1-355 295-658 (659)
5 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-49 5.3E-54 434.8 33.1 338 1-356 996-1391(1394)
6 PLN03140 ABC transporter G fam 100.0 3.2E-49 7E-54 432.6 33.1 351 1-355 426-789 (1470)
7 KOG0061 Transporter, ABC super 100.0 1.4E-47 3.1E-52 389.5 30.0 344 1-358 259-611 (613)
8 KOG0065 Pleiotropic drug resis 100.0 1.8E-45 3.9E-50 381.7 24.9 354 1-358 350-733 (1391)
9 KOG0065 Pleiotropic drug resis 100.0 1.9E-45 4.1E-50 381.5 24.5 342 1-358 1024-1386(1391)
10 PF01061 ABC2_membrane: ABC-2 99.9 1.8E-24 3.8E-29 192.9 0.2 208 90-302 1-210 (210)
11 TIGR01291 nodJ ABC-2 type tran 99.8 1.4E-16 3.1E-21 146.4 21.5 237 92-354 7-250 (253)
12 TIGR01247 drrB daunorubicin re 99.7 2.5E-16 5.4E-21 143.5 19.5 227 98-349 1-234 (236)
13 TIGR00025 Mtu_efflux ABC trans 99.7 6E-16 1.3E-20 140.6 20.1 225 104-353 2-230 (232)
14 TIGR03861 phenyl_ABC_PedC alco 99.7 1.3E-15 2.8E-20 140.2 22.5 236 90-353 2-250 (253)
15 PRK15066 inner membrane transp 99.7 3.3E-14 7.1E-19 131.2 22.9 243 89-358 7-256 (257)
16 TIGR03062 pip_yhgE_Cterm YhgE/ 99.6 3.4E-14 7.5E-19 126.9 13.2 155 174-355 53-207 (208)
17 TIGR01248 drrC daunorubicin re 99.3 2.6E-11 5.7E-16 102.5 11.0 132 162-299 13-147 (152)
18 COG0842 ABC-type multidrug tra 99.3 4E-10 8.6E-15 104.7 18.9 169 165-356 115-284 (286)
19 COG1682 TagG ABC-type polysacc 99.0 1.7E-07 3.8E-12 86.0 20.9 237 89-356 17-257 (263)
20 TIGR03518 ABC_perm_GldF glidin 98.8 1E-06 2.2E-11 80.3 21.6 219 93-353 2-239 (240)
21 PF12679 ABC2_membrane_2: ABC- 98.6 5.2E-06 1.1E-10 77.1 19.7 169 168-355 88-276 (277)
22 PRK15176 Vi polysaccharide exp 98.6 6.6E-06 1.4E-10 75.9 19.3 105 228-355 156-260 (264)
23 PF12698 ABC2_membrane_3: ABC- 98.5 2.5E-08 5.4E-13 94.9 0.0 156 164-348 183-343 (344)
24 PF03379 CcmB: CcmB protein; 98.2 7.8E-05 1.7E-09 66.6 15.3 157 92-262 1-166 (215)
25 PF06422 PDR_CDR: CDR ABC tran 97.8 4.7E-05 1E-09 59.6 5.5 49 311-360 31-79 (103)
26 TIGR01190 ccmB heme exporter p 97.7 0.0021 4.5E-08 56.9 15.2 153 96-262 2-163 (211)
27 COG1277 NosY ABC-type transpor 97.7 0.0038 8.2E-08 58.1 17.7 244 91-355 3-276 (278)
28 COG4587 ABC-type uncharacteriz 97.4 0.012 2.7E-07 52.4 15.8 239 87-354 3-259 (268)
29 PF12051 DUF3533: Protein of u 97.0 0.024 5.3E-07 55.3 15.0 137 180-343 240-380 (382)
30 TIGR03733 lanti_perm_MutG lant 97.0 0.28 6.1E-06 44.8 21.8 69 179-247 85-158 (248)
31 COG1511 Predicted membrane pro 96.9 0.014 3.1E-07 62.2 13.4 161 174-360 610-771 (780)
32 COG2386 CcmB ABC-type transpor 96.9 0.034 7.4E-07 48.3 13.0 159 90-262 2-169 (221)
33 PF08370 PDR_assoc: Plant PDR 96.5 0.0062 1.3E-07 42.9 4.7 45 311-356 11-56 (65)
34 TIGR01257 rim_protein retinal- 96.2 0.22 4.8E-06 58.4 17.5 183 158-351 669-858 (2272)
35 PF06182 ABC2_membrane_6: ABC- 95.5 1 2.2E-05 40.5 16.0 113 180-296 72-185 (229)
36 COG3559 TnrB3 Putative exporte 95.5 1.2 2.6E-05 43.2 16.5 28 106-133 296-323 (536)
37 PF12730 ABC2_membrane_4: ABC- 95.3 0.92 2E-05 39.7 15.1 84 169-253 69-168 (232)
38 COG1668 NatB ABC-type Na+ effl 94.5 1.1 2.5E-05 44.1 14.2 116 175-293 224-356 (407)
39 TIGR01257 rim_protein retinal- 92.3 1.1 2.4E-05 52.8 11.5 96 161-258 1699-1798(2272)
40 TIGR03732 lanti_perm_MutE lant 91.7 10 0.00022 34.5 21.0 114 170-298 63-189 (241)
41 COG4200 Uncharacterized protei 89.6 15 0.00032 32.9 21.8 145 171-355 76-233 (239)
42 PF09847 DUF2074: Predicted pe 86.6 22 0.00048 35.6 14.2 106 84-197 242-347 (449)
43 KOG0059 Lipid exporter ABCA1 a 70.0 32 0.00069 37.7 10.2 97 163-262 319-417 (885)
44 COG4325 Predicted membrane pro 64.5 92 0.002 30.2 10.6 48 197-244 133-181 (464)
45 PRK11026 ftsX cell division AB 63.6 19 0.00041 34.1 6.1 47 83-129 4-50 (309)
46 TIGR03061 pip_yhgE_Nterm YhgE/ 60.8 10 0.00022 32.1 3.5 33 98-130 1-36 (164)
47 PF13829 DUF4191: Domain of un 60.5 1.3E+02 0.0028 27.0 10.4 48 82-129 3-50 (224)
48 PF04123 DUF373: Domain of unk 60.1 1.7E+02 0.0036 28.2 14.5 48 84-132 133-180 (344)
49 PF10766 DUF2592: Protein of u 58.6 20 0.00043 22.3 3.4 21 108-128 4-24 (41)
50 PF12273 RCR: Chitin synthesis 57.5 11 0.00024 30.6 3.0 20 330-349 2-21 (130)
51 PF01102 Glycophorin_A: Glycop 57.1 18 0.00038 29.1 4.0 28 329-356 67-94 (122)
52 COG3559 TnrB3 Putative exporte 50.9 2.6E+02 0.0057 27.8 11.4 107 180-295 124-232 (536)
53 TIGR00439 ftsX putative protei 49.9 35 0.00076 32.3 5.5 46 83-128 4-49 (309)
54 TIGR01195 oadG_fam sodium pump 47.4 45 0.00097 24.7 4.6 15 335-349 11-25 (82)
55 PF13346 ABC2_membrane_5: ABC- 46.1 1.9E+02 0.0041 24.7 14.2 31 177-207 71-101 (206)
56 PLN03211 ABC transporter G-25; 43.3 3.7E+02 0.008 28.4 12.4 79 158-241 463-543 (659)
57 PF11446 DUF2897: Protein of u 36.6 57 0.0012 22.2 3.3 25 335-359 7-31 (55)
58 PF04277 OAD_gamma: Oxaloaceta 36.2 87 0.0019 22.7 4.7 16 334-349 17-32 (79)
59 PTZ00046 rifin; Provisional 35.8 47 0.001 31.9 3.9 29 329-358 317-345 (358)
60 TIGR01477 RIFIN variant surfac 35.0 49 0.0011 31.7 3.9 29 329-358 312-340 (353)
61 PRK03814 oxaloacetate decarbox 34.3 68 0.0015 24.0 3.8 19 334-352 14-32 (85)
62 PF12911 OppC_N: N-terminal TM 34.3 1.4E+02 0.003 19.8 5.8 35 96-130 5-40 (56)
63 PF12273 RCR: Chitin synthesis 33.6 34 0.00073 27.7 2.3 22 335-356 4-25 (130)
64 PF15048 OSTbeta: Organic solu 30.7 95 0.0021 24.9 4.2 40 314-354 17-57 (125)
65 PF02009 Rifin_STEVOR: Rifin/s 28.9 60 0.0013 30.5 3.4 29 329-358 258-286 (299)
66 PF12768 Rax2: Cortical protei 26.6 1.2E+02 0.0025 28.4 4.8 18 367-384 264-281 (281)
67 PF03672 UPF0154: Uncharacteri 25.8 67 0.0015 22.6 2.3 27 333-359 5-31 (64)
68 TIGR01943 rnfA electron transp 25.1 2.6E+02 0.0056 24.4 6.3 35 328-364 132-166 (190)
69 PHA02690 hypothetical protein; 24.6 2.8E+02 0.0062 20.2 6.6 31 98-128 58-88 (90)
70 PF12725 DUF3810: Protein of u 24.5 3.3E+02 0.0072 25.8 7.6 30 175-204 3-32 (318)
71 KOG2533 Permease of the major 23.5 7.9E+02 0.017 25.0 14.1 13 181-193 275-287 (495)
72 PRK02919 oxaloacetate decarbox 22.3 2.1E+02 0.0045 21.3 4.5 15 335-349 14-28 (82)
73 KOG4404 Tandem pore domain K+ 21.3 5.6E+02 0.012 24.4 8.0 72 285-363 186-257 (350)
74 PF05545 FixQ: Cbb3-type cytoc 20.8 1.5E+02 0.0032 19.3 3.2 23 332-354 11-33 (49)
75 COG4393 Predicted membrane pro 20.4 2.8E+02 0.006 26.5 5.8 17 235-251 42-58 (405)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.2e-52 Score=426.71 Aligned_cols=345 Identities=21% Similarity=0.378 Sum_probs=299.8
Q ss_pred ChhhhhcCCCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhcCC---C
Q 016275 1 MQFFALNGFPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQDS---G 77 (392)
Q Consensus 1 v~YF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~ 77 (392)
++||+++|++||++.|||||++|+++.+.+.+. +..+..+++.+.|++++.+++..+..+.......+ .
T Consensus 255 ~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 326 (617)
T TIGR00955 255 VPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN--------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKD 326 (617)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHHhhcCccccc--------chHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccc
Confidence 379999999999999999999999986543221 12345667888898887776554443322211000 0
Q ss_pred --ccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 016275 78 --ALEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFM 155 (392)
Q Consensus 78 --~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~ 155 (392)
.....++.++++.|+.++++|.+++.+|||.++..++++.+++++++|.+|++++.++.+++++.|++|+++++..+.
T Consensus 327 ~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~ 406 (617)
T TIGR00955 327 SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQ 406 (617)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 112235678999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred hh-cCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHH
Q 016275 156 TI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLV 234 (392)
Q Consensus 156 ~~-~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~ 234 (392)
++ .+++.++.||.+|.||+.+|+|++++|++|++++++|..++.+++|++++||++|++.+++.|+.|++++++..+++
T Consensus 407 ~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~ 486 (617)
T TIGR00955 407 NVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVA 486 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHH
Confidence 54 56788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcc-C-----
Q 016275 235 ESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF-D----- 308 (392)
Q Consensus 235 ~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~-~----- 308 (392)
.++|.++++++++...|..++++++.++++++|++++.++||. || .|++|+||++|++++++.|||++.++ +
T Consensus 487 ~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~-~~-~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~ 564 (617)
T TIGR00955 487 TSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPV-YF-KWLSYLSWFRYGNEGLLINQWSDVDNIECTSAN 564 (617)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccH-HH-HHHHHcCHHHHHHHHHHHHHhCCCccccccCcC
Confidence 9999999999999999999999999999999999999999998 44 56999999999999999999998764 3
Q ss_pred ----CCCCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016275 309 ----NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKM 357 (392)
Q Consensus 309 ----~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~ 357 (392)
|..+|+++|+. +|++.++ .|.++++|+++.++|+++++++|+++.+.
T Consensus 565 ~~~~c~~~g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 565 TTGPCPSSGEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred cCCCCCcChHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44579999998 7888764 89999999999999999999999987553
No 2
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-51 Score=452.89 Aligned_cols=351 Identities=21% Similarity=0.396 Sum_probs=304.9
Q ss_pred ChhhhhcCCCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhc------
Q 016275 1 MQFFALNGFPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQ------ 74 (392)
Q Consensus 1 v~YF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------ 74 (392)
++||+++||+||++.|||||++|+++.+... ..++. +.......+++++.|++|+.+++..++++...+..
T Consensus 299 ~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~~--e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 375 (1394)
T TIGR00956 299 KQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPGY--EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTK 375 (1394)
T ss_pred HHHHHHcCCCCCCCCChHHHHHhccChhhhh-ccccc--cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhH
Confidence 4799999999999999999999998764221 11111 11112345689999999998877666554432110
Q ss_pred -----------CCCccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHH
Q 016275 75 -----------DSGALEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGS 143 (392)
Q Consensus 75 -----------~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g 143 (392)
........++..|+++|+++|++|++++.+|||..+..++++.+++|+++|++|+++++++.+++++.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g 455 (1394)
T TIGR00956 376 EAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGG 455 (1394)
T ss_pred HHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Confidence 001122345778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHH
Q 016275 144 LLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYF 223 (392)
Q Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~ 223 (392)
++|+++++.+++++..++.+..||++|.||+.+++|++++|++|++++++|..++.+++|.+++|||+|++.+++.|+.|
T Consensus 456 ~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f 535 (1394)
T TIGR00956 456 ALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFY 535 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHH
Confidence 99999999888887777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcC
Q 016275 224 VLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFE 303 (392)
Q Consensus 224 ~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~ 303 (392)
+++++++.+++.+++.+++++++|...|+.++++++++++++||+++|.++||. |..|++|+||++|++++++.|||+
T Consensus 536 ~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~ 613 (1394)
T TIGR00956 536 LLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFH 613 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999998 556699999999999999999999
Q ss_pred CCccCCC------------------------------CCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016275 304 GLKFDNN------------------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT 353 (392)
Q Consensus 304 ~~~~~~~------------------------------~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~ 353 (392)
+.+++|+ .+|+++|+..++++.++ .|+++++|++++++|++++++++++
T Consensus 614 ~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 614 GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred CCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887662 37889999767887665 9999999999999999999999998
Q ss_pred hhcc
Q 016275 354 VEKM 357 (392)
Q Consensus 354 ~~~~ 357 (392)
.+..
T Consensus 693 ~~~~ 696 (1394)
T TIGR00956 693 NKGA 696 (1394)
T ss_pred cccc
Confidence 7633
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.4e-51 Score=447.18 Aligned_cols=342 Identities=20% Similarity=0.299 Sum_probs=300.0
Q ss_pred Chhhhhc-CCC-CCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhcCCCc
Q 016275 1 MQFFALN-GFP-CPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQDSGA 78 (392)
Q Consensus 1 v~YF~~~-G~~-cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 78 (392)
++||+++ |++ ||++.|||||+||+++.+.+.. ...++++.|++|+.+++..+.+++...+.++..
T Consensus 1113 ~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~-------------~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 1179 (1470)
T PLN03140 1113 IEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK-------------LGIDFAEHYKSSSLYQRNKALVKELSTPPPGAS 1179 (1470)
T ss_pred HHHHHhcCCCCCCCCCCCchhhhhhhhccccccc-------------ccchHHHHHhccHHHHHHHHHHHHhccCCCCcc
Confidence 4899998 675 9999999999999987542211 113689999999988877666655543221111
Q ss_pred --cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCCh---hhHHHHHHHHHHHHHHHH
Q 016275 79 --LEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDN---NSIQARGSLLMFVASYLT 153 (392)
Q Consensus 79 --~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~---~~~~~~~g~l~~~~~~~~ 153 (392)
....++.+++++|++++++|+++++||||.++..|+++.+++++++|++|++++++. .+++++.|++|+.+++.+
T Consensus 1180 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 1259 (1470)
T PLN03140 1180 DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259 (1470)
T ss_pred ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 123568899999999999999999999999999999999999999999999998764 567788999998888877
Q ss_pred HHhh-cCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHH
Q 016275 154 FMTI-GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACML 232 (392)
Q Consensus 154 ~~~~-~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~ 232 (392)
+.++ ..+|.+..||.+|.||+.+|+|++.+|++|++++|+|+.++.+++|.+++||++|++++++.|+.|++++++..+
T Consensus 1260 ~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~ 1339 (1470)
T PLN03140 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFL 1339 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Confidence 7654 457889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCC--
Q 016275 233 LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN-- 310 (392)
Q Consensus 233 ~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~-- 310 (392)
++.++|+++++++||.+.|..++++++.++++|||+++|.++||. ||+ |++|+||++|++++++.|||.|.++.|+
T Consensus 1340 ~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y~~~~l~~~~f~~~~~~~~~~ 1417 (1470)
T PLN03140 1340 YFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAWTVYGLIVSQYGDVEDTIKVP 1417 (1470)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HHH-HHHHcCHHHHHHhhhHHHHhCCCCCcccCC
Confidence 999999999999999999999999999999999999999999998 565 6999999999999999999999876553
Q ss_pred -----CCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 311 -----LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 311 -----~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
.++++++..++|+++++ .|.+++++++|+++|++++++++++.+++|
T Consensus 1418 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1418 GGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred CCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 34678887879998875 999999999999999999999999988765
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6e-50 Score=410.91 Aligned_cols=341 Identities=18% Similarity=0.267 Sum_probs=270.0
Q ss_pred ChhhhhcCCCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHH--Hh-hc---
Q 016275 1 MQFFALNGFPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEI--CK-AQ--- 74 (392)
Q Consensus 1 v~YF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~-~~--- 74 (392)
++||+++|++||++.|||||+||+++.+...+. .. ..+.....+.+.+.|+++. .++..+..+.. .. ..
T Consensus 295 ~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 369 (659)
T PLN03211 295 MAYFESVGFSPSFPMNPADFLLDLANGVCQTDG---VS-EREKPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFV 369 (659)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHcCccccCCC---cc-ccccchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhh
Confidence 479999999999999999999999986532110 00 0011112234556665322 11111111110 00 00
Q ss_pred ----CCCc-cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHH
Q 016275 75 ----DSGA-LEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVA 149 (392)
Q Consensus 75 ----~~~~-~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~ 149 (392)
.... .....+.++|++|+.+|++|.+++ +||+.+...|+++.+++|+++|++|++.+ ..+++++.|++|+++
T Consensus 370 ~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~ 446 (659)
T PLN03211 370 GSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFIS 446 (659)
T ss_pred hcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 0000 011234578999999999999998 89999999999999999999999999985 678999999999998
Q ss_pred HHHHHHh-hcCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHH
Q 016275 150 SYLTFMT-IGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLF 228 (392)
Q Consensus 150 ~~~~~~~-~~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~ 228 (392)
++.++.+ +..++.|+.||++|.||+.+|+|++++|++|++++++|..++.+++|++++|||+|++.++++|+.|+++++
T Consensus 447 ~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~ 526 (659)
T PLN03211 447 IFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLL 526 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHH
Confidence 8766544 578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCc--
Q 016275 229 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK-- 306 (392)
Q Consensus 229 l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~-- 306 (392)
+..+++.++|++++++++|...|+.++++++.++++|||++++ +||+ |..|++|+||++|++++++.|||.+.+
T Consensus 527 l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~--~~~W~~ylS~~~y~~eal~~nef~~~~~~ 602 (659)
T PLN03211 527 GYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS--CMAWIKYISTTFYSYRLLINVQYGEGKRI 602 (659)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH--HHHHHHHhCHHHHHHHHHHHHhcCCcccc
Confidence 9999999999999999999999999999999999999999997 7998 445699999999999999999997643
Q ss_pred ---cCCCC------CHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016275 307 ---FDNNL------DGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 307 ---~~~~~------~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
+.|+. .+..++.. ..++. .+.|.++++|+++.+++++++|++|++.+
T Consensus 603 ~~~~~C~~~~~~~~~~c~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 603 SSLLGCSLPHGSDRASCKFVEE-DVAGQ-ISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccccCCCCcccCCCCCCccchh-hhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24531 11223333 22232 24899999999999999999999998654
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-49 Score=434.80 Aligned_cols=338 Identities=17% Similarity=0.280 Sum_probs=292.1
Q ss_pred ChhhhhcCC-CCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhcC---C
Q 016275 1 MQFFALNGF-PCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQD---S 76 (392)
Q Consensus 1 v~YF~~~G~-~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~ 76 (392)
++||+++|+ +||++.|||||+||+++.+.+.. ..+++.+.|++|+.+++..++++....... .
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 1062 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAED 1062 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCcc
Confidence 489999996 99999999999999998643211 123688999999887766665555433211 0
Q ss_pred --CccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHH
Q 016275 77 --GALEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTF 154 (392)
Q Consensus 77 --~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~~~~~~ 154 (392)
......++.+++++|+++|++|.+++.||||.++..|+++.+++|+++|++|+++++++.+++++.|.+|+.+++..+
T Consensus 1063 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1063 DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNP 1142 (1394)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111224678999999999999999999999999999999999999999999999999999999999999988777666
Q ss_pred HhhcCCchhhHHHHHH-HHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhh-------HHHHHHH
Q 016275 155 MTIGGFPSFVEDMKVF-ERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQH-------FIYFVLL 226 (392)
Q Consensus 155 ~~~~~~~~~~~er~~~-~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~-------f~~~~l~ 226 (392)
.....++.|+.||.++ .||+.+|+|++.+|++|++++|+|+.++.+++|.+++||++|++.++.. |+.++++
T Consensus 1143 ~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~ 1222 (1394)
T TIGR00956 1143 LIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLL 1222 (1394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHH
Confidence 6556788888898886 8999999999999999999999999999999999999999999987766 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCc
Q 016275 227 LFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK 306 (392)
Q Consensus 227 ~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~ 306 (392)
++++.+++.++|+++++++|+...|..++++++.++++|||+++|.++||. +|. |++|+||++|++++++.++|++.+
T Consensus 1223 ~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l~~~~~~~~~ 1300 (1394)
T TIGR00956 1223 STMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQALLSTGLADVP 1300 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHHHHHHcCCCe
Confidence 999999999999999999999999999999999999999999999999998 666 599999999999999999998877
Q ss_pred cCCC--------------------------------------------CCHHHHHHhhhccccCchhHHHHHHHHHHHHH
Q 016275 307 FDNN--------------------------------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVF 342 (392)
Q Consensus 307 ~~~~--------------------------------------------~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~ 342 (392)
+.|. .+|+++|+. ++++.++ .|+|++++++++++
T Consensus 1301 ~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~~-~w~~~~i~~~~~~~ 1378 (1394)
T TIGR00956 1301 VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYSG-RWRNFGIFIAFIFF 1378 (1394)
T ss_pred eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCcccc-cccchhhhhHHHHH
Confidence 5331 389999998 6776664 99999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 016275 343 YRLVFLGIIKTVEK 356 (392)
Q Consensus 343 ~~~la~~~l~~~~~ 356 (392)
+ ++++++++++.+
T Consensus 1379 ~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1379 N-IIATVFFYWLAR 1391 (1394)
T ss_pred H-HHHHHhhheEEE
Confidence 9 778888887643
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.2e-49 Score=432.57 Aligned_cols=351 Identities=17% Similarity=0.248 Sum_probs=298.6
Q ss_pred ChhhhhcCCCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhc--CCCc
Q 016275 1 MQFFALNGFPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQ--DSGA 78 (392)
Q Consensus 1 v~YF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~ 78 (392)
.+||+++||+||++.|||||++|+++.+. ++..+.....+.....+++++++|++|+.+++..++++...+.. +...
T Consensus 426 ~~yF~~lGf~cP~~~n~ADFl~~v~s~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 504 (1470)
T PLN03140 426 LEFFESCGFKCPERKGTADFLQEVTSKKD-QEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAA 504 (1470)
T ss_pred HHHHHHcCCCCCCCCChHHHHHHhcCchh-hhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccccc
Confidence 37999999999999999999999998542 11111011112122346789999999988877666554432211 1112
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCC---hhhHHHHHHHHHHHHHHHHHH
Q 016275 79 LEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTD---NNSIQARGSLLMFVASYLTFM 155 (392)
Q Consensus 79 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~---~~~~~~~~g~l~~~~~~~~~~ 155 (392)
....++..+++.|++.+++|.++.++||+..+..++++.+++|+++|++|++.+.+ ..+.+...|.+||.+++.++.
T Consensus 505 ~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~ 584 (1470)
T PLN03140 505 LVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584 (1470)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 23456889999999999999999999999999999999999999999999998643 234567788888888888888
Q ss_pred hhcCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHH
Q 016275 156 TIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVE 235 (392)
Q Consensus 156 ~~~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
++..++.+..||++|.|||..++|++++|++|++++++|..++.+++|++++|||+|+++++++|+.|+++++++.+++.
T Consensus 585 ~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~ 664 (1470)
T PLN03140 585 GFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAA 664 (1470)
T ss_pred HHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccC---C---
Q 016275 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD---N--- 309 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~---~--- 309 (392)
+++.++++++++...|+.++++++++++++||+++|.++||+ |..|++|+||++|+++|++.|||.+..+. |
T Consensus 665 ~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~--w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~ 742 (1470)
T PLN03140 665 GIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN--WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN 742 (1470)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch--HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC
Confidence 999999999999999999999999999999999999999998 45569999999999999999999886543 2
Q ss_pred -CCCHHHHHHhhhccccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016275 310 -NLDGEQVLRDKWQLQMGY-SKWVDLAILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 310 -~~~g~~~l~~~~~~~~~~-~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
..+|+++|+. +|++.++ +.|.++++|++++++|++++++++++.+
T Consensus 743 ~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 743 STRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred CcccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2689999988 7887543 4799999999999999999999999865
No 7
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-47 Score=389.50 Aligned_cols=344 Identities=29% Similarity=0.553 Sum_probs=287.3
Q ss_pred ChhhhhcCCCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhcCCCccc
Q 016275 1 MQFFALNGFPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQDSGALE 80 (392)
Q Consensus 1 v~YF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
++||+++|++||++.|||||++|+++.+ ++.++ .....+.....+.++......+... ...+.-......
T Consensus 259 ~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 328 (613)
T KOG0061|consen 259 LEFFSSLGFPCPELENPADFLLDLLSVD-SGTRE------LEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSKKV 328 (613)
T ss_pred HHHHHhCCCCCCCcCChHHHHHHHHccC-CCchh------HHhHHHHHHHhhhccccchhhhhHH---HHhhhccccccc
Confidence 4799999999999999999999999965 11110 1112222233333332111111111 111100001111
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhh-cC
Q 016275 81 KKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTI-GG 159 (392)
Q Consensus 81 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~ 159 (392)
+....++|+.|+..|++|.+++.+|||.+...|+++.+++++++|.+|++.+.+..+++++.|++++++.+..+.++ ++
T Consensus 329 ~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~ 408 (613)
T KOG0061|consen 329 EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGA 408 (613)
T ss_pred ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11228999999999999999999999999999999999999999999999999999999999999999888877765 47
Q ss_pred CchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 016275 160 FPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMM 239 (392)
Q Consensus 160 ~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~ 239 (392)
++.|+.||++|.||+.+|+|+.++|++|+.++++|..++.+++|++++||++|++++...|+.+++++++..+++.++|+
T Consensus 409 i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~ 488 (613)
T KOG0061|consen 409 VPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGL 488 (613)
T ss_pred HHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcc--------CCCC
Q 016275 240 IVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF--------DNNL 311 (392)
Q Consensus 240 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~--------~~~~ 311 (392)
+++++++|...|..++++++.++++++|++++.+.+|+ |.+|++|+|+++|++|++++|||.+... .|..
T Consensus 489 ~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~ 566 (613)
T KOG0061|consen 489 FISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCES 566 (613)
T ss_pred HHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccc
Confidence 99999999999999999999999999999999999998 5567999999999999999999996222 3447
Q ss_pred CHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 312 DGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 312 ~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
+|.++++. .+++.++ .|.|+.+++++.++|++++|+.++++.+.+
T Consensus 567 ~~~~~l~~-~~~~~~~-~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 567 TGEDVLKQ-LGFEDSS-FWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cHHHHHHh-cCCcccc-cchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999 6776554 999999999999999999999999987654
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-45 Score=381.71 Aligned_cols=354 Identities=22% Similarity=0.396 Sum_probs=309.8
Q ss_pred ChhhhhcCCCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhcCC--Cc
Q 016275 1 MQFFALNGFPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQDS--GA 78 (392)
Q Consensus 1 v~YF~~~G~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~ 78 (392)
++||+++||.||+++++|||+.++.+.+ +....+...+.+.....++++.+.|++++.+++...+++...++..+ ..
T Consensus 350 ~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~a 428 (1391)
T KOG0065|consen 350 LPYFEDMGFKCPPRKGTADFLTEVTSKK-DQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAA 428 (1391)
T ss_pred HHHHHhcCccCCCccCHHHHHHHhhcCc-cccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchh
Confidence 4799999999999999999988888732 22222222222334455689999999999999888877766554322 34
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHHHHHHHhh
Q 016275 79 LEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLG-TDNNSIQARGSLLMFVASYLTFMTI 157 (392)
Q Consensus 79 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~ 157 (392)
+..+++..+.|.|++.++.|.+....||..++....++.+++++++|.+|++.+ .+..+.+.+.|.+||.+++.++.++
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l 508 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL 508 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH
Confidence 566789999999999999999999999999999999999999999999999998 6677889999999999999888888
Q ss_pred cCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHH
Q 016275 158 GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESL 237 (392)
Q Consensus 158 ~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~ 237 (392)
.-++.....|+++.|+|...+|+++++.++..+.++|..++.+++|.+|.||+.|+.+++++||.++++++++.+++.++
T Consensus 509 aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~l 588 (1391)
T KOG0065|consen 509 AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGL 588 (1391)
T ss_pred HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCC-------
Q 016275 238 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN------- 310 (392)
Q Consensus 238 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~------- 310 (392)
..++++++++...|+.++.+.++...+++|+.+|..+||+ |.+|++|+||+.|++|+++.|||++..++|.
T Consensus 589 Fr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~ 666 (1391)
T KOG0065|consen 589 FRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYD 666 (1391)
T ss_pred HHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccc
Confidence 9999999999999999999999999999999999999997 6667999999999999999999999888774
Q ss_pred --------------------CCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 311 --------------------LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 311 --------------------~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
..|.+++...++++..+ +|++++++++|.++|.++..+++.+.+..+
T Consensus 667 n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 667 NISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred ccccccccchhhccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 23455665545555554 999999999999999999999999876433
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-45 Score=381.54 Aligned_cols=342 Identities=19% Similarity=0.294 Sum_probs=300.1
Q ss_pred ChhhhhcC-CCCCCCCCchhHHHhhhccccchhhhhccCCCCCcHHHHHHHHHHHhcCHhhHHHHHHHHHHHhhcCC---
Q 016275 1 MQFFALNG-FPCPALQNPSDHFLKTINKDFQKDIEEGLAGVIPTEEAIDILTKSYKSSDNYLQLRSQVAEICKAQDS--- 76 (392)
Q Consensus 1 v~YF~~~G-~~cP~~~NPAD~~ld~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--- 76 (392)
++|||++| .+||+..|||||+||+++...+.+. -.++++.|++|+.+++++++++.+.++.++
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~-------------~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~ 1090 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEASL-------------SVDFAEIWKNSEEYKRNKELVKELSQPPPGFST 1090 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccccc-------------CccHHHHHhccHHHHHHHHHHHHHhcCCccCCc
Confidence 58999986 9999999999999999986543321 127999999999999999999988876444
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHh
Q 016275 77 GALEKKSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMT 156 (392)
Q Consensus 77 ~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 156 (392)
+...+.++.+|++.|++.+++|+...+||+|.++..|+++.++.|+++|+.|++.+++..+++|..|.+|+.+.+.....
T Consensus 1091 ~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~ 1170 (1391)
T KOG0065|consen 1091 DLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNN 1170 (1391)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhh
Confidence 22345678999999999999999999999999999999999999999999999999999999999999998877666554
Q ss_pred hc-CCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHH
Q 016275 157 IG-GFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVE 235 (392)
Q Consensus 157 ~~-~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
.. ..+.+..||..+.||+.+|+|+..+|++|++++|+|+.++++.+|.++.|+++|+.+++.+++.+++..+++.+...
T Consensus 1171 ~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~ 1250 (1391)
T KOG0065|consen 1171 NQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFT 1250 (1391)
T ss_pred hhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44 44566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCC-----
Q 016275 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNN----- 310 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~----- 310 (392)
.+|+++..++||...|+.+.+.++..+..|||++.|...||. ||. |.+|+||++|.++++...++++.+..|.
T Consensus 1251 ~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~ 1328 (1391)
T KOG0065|consen 1251 TLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMN 1328 (1391)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCCceeeecCCcc
Confidence 999999999999999999999999999999999999999999 777 5999999999999999999999887664
Q ss_pred -------CCHHHHHHhhhc----cccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 311 -------LDGEQVLRDKWQ----LQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 311 -------~~g~~~l~~~~~----~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
.+..++++.+++ +.++. ......+...+.+++.+++.+.+++..++|
T Consensus 1329 ~~~pp~g~tcge~m~~~~~~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1329 YFDPPSGQTCGEFMEDFFGEGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred ccCCCCCcCHHHHHHHHhccCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 466789999887 55443 333334556788888999999998887655
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=1.8e-24 Score=192.90 Aligned_cols=208 Identities=26% Similarity=0.365 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhc-CCchhhHHH
Q 016275 90 TQCIVLTSRSFVNMYRDLGYY-WFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIG-GFPSFVEDM 167 (392)
Q Consensus 90 ~q~~~l~~R~~~~~~R~~~~~-~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~~~~~~er 167 (392)
+|++.+++|+++..+|||... ...++.++++++++|.++.+.++..++. ++.+++...+....+.... ......+|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999887444444 6677776666665544443 346788899
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016275 168 KVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPN 247 (392)
Q Consensus 168 ~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~ 247 (392)
..+.||+.++.|++..|.+++.+.+++..++..+++..+.+.+.|++.+ +++.+++.+++...++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999899876 66778888888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhc
Q 016275 248 YLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 302 (392)
Q Consensus 248 ~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~ 302 (392)
.+.+..+.+.+..+++++||.++|.+.+|+ |.+|+.+++|++|+.|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999997 66779999999999999987764
No 11
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.76 E-value=1.4e-16 Score=146.45 Aligned_cols=237 Identities=14% Similarity=0.057 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHhhccCCCC---hhhH-HHHHHHHHHHHHHHHHHhhcCCchhh--
Q 016275 92 CIVLTSRSFVNMYRD-LGYYWFRLGVYVLLGIGLATVFSNLGTD---NNSI-QARGSLLMFVASYLTFMTIGGFPSFV-- 164 (392)
Q Consensus 92 ~~~l~~R~~~~~~R~-~~~~~~~~~~~~~~~ll~G~~f~~~~~~---~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~-- 164 (392)
...+.+|+++.++|+ |..+...+++|+++.+++|..+....++ .+.. +-..|++.+.+++.+.... ....+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~-~~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFET-IYATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 566779999999999 9999999999999999999988653221 1111 1112444433333222111 111222
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016275 165 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASL 244 (392)
Q Consensus 165 ~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~ 244 (392)
+|+..++|-+.++. +...+++||++.+....+++.++...+.+ +.|.... ..+.....++++..++..++|.+++..
T Consensus 86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~ 162 (253)
T TIGR01291 86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSMLVAAL 162 (253)
T ss_pred HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24445566666666 89999999999998877777766555543 4454432 345555566667788888999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccc
Q 016275 245 VPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQ 324 (392)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~ 324 (392)
.++.+.+..+.+.+..|++++||.++|.+.+|+ |.+++.+++|++|+.|++....+.+ +
T Consensus 163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~g~-------------------~ 221 (253)
T TIGR01291 163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVMLGG-------------------P 221 (253)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHhCC-------------------C
Confidence 999999998999999999999999999999998 7777999999999999986553221 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016275 325 MGYSKWVDLAILFGMVVFYRLVFLGIIKTV 354 (392)
Q Consensus 325 ~~~~~~~~~~iL~~~~v~~~~la~~~l~~~ 354 (392)
. .+.+.+++++.++.+++..++...+|++
T Consensus 222 ~-~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 G-TQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1256788899999999988887776654
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.73 E-value=2.5e-16 Score=143.51 Aligned_cols=227 Identities=14% Similarity=0.051 Sum_probs=164.2
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccC-CCC--hhh---H-HHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 016275 98 RSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNL-GTD--NNS---I-QARGSLLMFVASYLTFMTIGGFPSFVEDMKVF 170 (392)
Q Consensus 98 R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~-~~~--~~~---~-~~~~g~l~~~~~~~~~~~~~~~~~~~~er~~~ 170 (392)
|+++..+|||..+...+++|+++.+++|.++... +.+ ..+ . +-..|.+.+.....+... .......+|+..+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~-~~~~~~~~~~g~~ 79 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS-GISVIWDRQFGFL 79 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCHH
Confidence 6788899999999999999999999999987543 111 111 1 112233333222222111 1111222344455
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Q 016275 171 ERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLT 250 (392)
Q Consensus 171 ~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~ 250 (392)
+|-..++. +...|+++|.+.+++..+++.++...+.+++.+.+. ..+...++..++..++..++|.+++...++.+.
T Consensus 80 ~~~~~~P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~ 156 (236)
T TIGR01247 80 KEILVAPA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEG 156 (236)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 55555555 899999999999999999999888888887766553 344445555666777889999999999999998
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhH
Q 016275 251 GIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKW 330 (392)
Q Consensus 251 a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 330 (392)
+..+.+.+..++.++||.++|.+.+|+ |.+|+.+++|.+|+.|++......+. ... +.+
T Consensus 157 ~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~~------------------~~~-~~~ 215 (236)
T TIGR01247 157 FQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGVS------------------PTF-PLE 215 (236)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCCC------------------ccc-chH
Confidence 888999999999999999999999998 66779999999999999764332211 012 367
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016275 331 VDLAILFGMVVFYRLVFLG 349 (392)
Q Consensus 331 ~~~~iL~~~~v~~~~la~~ 349 (392)
.++++|+++.+++.+++..
T Consensus 216 ~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 216 QDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888754
No 13
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.72 E-value=6e-16 Score=140.62 Aligned_cols=225 Identities=11% Similarity=0.025 Sum_probs=150.8
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHhhCCCCchH
Q 016275 104 YRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQA-RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERERLNGHYGAT 182 (392)
Q Consensus 104 ~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~er~~~~rE~~~g~Y~~~ 182 (392)
+|||..+...+.+|+++.++++.++.+.. +....+. ..+.+-+..+..+....+..-...+|+..++|-+.++. +..
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~-~~~ 79 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPL-PRL 79 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCC-cHH
Confidence 69999999999999999999998886531 1112211 22322222222111111111122334446667777766 999
Q ss_pred HHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHH
Q 016275 183 AFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVP---NYLTGIITGAGIQ 259 (392)
Q Consensus 183 ~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~---~~~~a~~~~~~~~ 259 (392)
.|+++|.+...+..+++..++. +.+++.|++.... ....++...+....+.+++.+++.+.+ +.+.+..+.+.+.
T Consensus 80 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~ 157 (232)
T TIGR00025 80 GILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLVW 157 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999888888877766555 4455778875433 233334444444555666666666654 4455577888888
Q ss_pred HHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhHHHHHHHHHH
Q 016275 260 GLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGM 339 (392)
Q Consensus 260 ~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~ 339 (392)
++++++||.++|.+.+|+ |.+|+.+++|++|+.+++......+. +.. ..+.++++++++
T Consensus 158 ~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~~------------------~~~-~~~~~~~~l~~~ 216 (232)
T TIGR00025 158 FIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVSV------------------DTF-GAVRDLVVVLAF 216 (232)
T ss_pred HHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCCC------------------Chh-hHHHHHHHHHHH
Confidence 999999999999999998 77889999999999999865543221 111 268888899999
Q ss_pred HHHHHHHHHHHHHH
Q 016275 340 VVFYRLVFLGIIKT 353 (392)
Q Consensus 340 ~v~~~~la~~~l~~ 353 (392)
.+++..++....|+
T Consensus 217 ~~v~~~la~~~~~r 230 (232)
T TIGR00025 217 WVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHhc
Confidence 99888888765543
No 14
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.72 E-value=1.3e-15 Score=140.25 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccC-CC------C---hhhHHHHHHHHHHHHHHHHHHhhcC
Q 016275 90 TQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNL-GT------D---NNSIQARGSLLMFVASYLTFMTIGG 159 (392)
Q Consensus 90 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~-~~------~---~~~~~~~~g~l~~~~~~~~~~~~~~ 159 (392)
++++.+++|+++.+.|||..+...+++|+++.+++|.+|... +. + ....+-..|++.+......+.+ +.
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-~~ 80 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-SL 80 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 578999999999999999999999999999999999988543 11 1 0111222344433333222221 11
Q ss_pred CchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 016275 160 FPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMM 239 (392)
Q Consensus 160 ~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~ 239 (392)
.....+|+....+-+.... +...+.+++.+..+...+++.++...+.+ +.|.+.+...+......+++..++..++|+
T Consensus 81 ~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~lgl 158 (253)
T TIGR03861 81 SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGALGL 158 (253)
T ss_pred HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1123344446666666666 88889999999998888887766555554 346655444444444555667777889999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC---CccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHH
Q 016275 240 IVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL---PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQV 316 (392)
Q Consensus 240 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~i---P~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~ 316 (392)
++|.++++.+.+..+.+.++.+++++||.+.|.+.+ |+ |.+|+.++||++|..|++...-. |
T Consensus 159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~-g------------ 223 (253)
T TIGR03861 159 ALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALY-G------------ 223 (253)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHh-C------------
Confidence 999999998888888888999999999999999877 65 77779999999999999854321 1
Q ss_pred HHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016275 317 LRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT 353 (392)
Q Consensus 317 l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~ 353 (392)
+ . .|.+++++.++.+++..++....|+
T Consensus 224 -------~--~-~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 224 -------Q--L-NLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred -------C--c-chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1 3556677788888888888766553
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.66 E-value=3.3e-14 Score=131.23 Aligned_cols=243 Identities=12% Similarity=0.077 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHhhccC-CC--Chhh-HHHHHHHHHHHHHHHHHHhhcCCchh
Q 016275 89 LTQCIVLTSRSFVNMYRDLGY-YWFRLGVYVLLGIGLATVFSNL-GT--DNNS-IQARGSLLMFVASYLTFMTIGGFPSF 163 (392)
Q Consensus 89 ~~q~~~l~~R~~~~~~R~~~~-~~~~~~~~~~~~ll~G~~f~~~-~~--~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~ 163 (392)
++-++.+.+|+++.+.||+.. +..-++++.++.+++|..+... +. +.+. .+-..|++.+.....+... +...+
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~--~~~~i 84 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN--VASSF 84 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 567889999999999999854 4555566667777777666432 11 1111 1122244433322222111 11222
Q ss_pred hHHH--HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016275 164 VEDM--KVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIV 241 (392)
Q Consensus 164 ~~er--~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i 241 (392)
.++| ...+|-..+.. +...+.+++.+......+++.++...+.+...|.+.. ........+++........|.++
T Consensus 85 ~~~~~~~~~~~l~vtp~-~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 85 FSAKFQRNIEELLVSPV-PNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHhhhHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2232 23333344554 8889999999988877777766666565554566532 23333333334344444558888
Q ss_pred HHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhh
Q 016275 242 ASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKW 321 (392)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~ 321 (392)
+...++.+....+.+.++.|++++||.++|.+++|+ |.+++.++||++|..|++...-+.+
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~g~----------------- 222 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFLGI----------------- 222 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHcCC-----------------
Confidence 888888888888889999999999999999999998 7788999999999999996543211
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 322 QLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 322 ~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
+ +...|.++++++++.+++..++...+|++++.|
T Consensus 223 --~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 223 --S-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred --C-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 1 112688899999999999999988888766554
No 16
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.57 E-value=3.4e-14 Score=126.85 Aligned_cols=155 Identities=13% Similarity=0.038 Sum_probs=126.0
Q ss_pred hhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 016275 174 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII 253 (392)
Q Consensus 174 ~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~ 253 (392)
+.+.. +.+.++++|.+..++..++++++...+.+++.|++.. ++..+++.+++..+++.++|.+++..+++...+
T Consensus 53 ~~~p~-~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~-- 127 (208)
T TIGR03062 53 LPKSA-RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF-- 127 (208)
T ss_pred cccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--
Confidence 33443 7788899999999999999999999999988898753 567788888889999999999999998876543
Q ss_pred HHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhHHHH
Q 016275 254 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDL 333 (392)
Q Consensus 254 ~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 333 (392)
.....+.+.++++|.++|.+.+|+ |.+|+++++|++|+.+++....+.+ + ....|.++
T Consensus 128 ~~~~~~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~-------------------~-~~~~~~~~ 185 (208)
T TIGR03062 128 LALVLLVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGG-------------------N-DGTLWQAV 185 (208)
T ss_pred HHHHHHHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCC-------------------c-HHHHHHHH
Confidence 344445677778999999999998 7778999999999999997665433 1 12378899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016275 334 AILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 334 ~iL~~~~v~~~~la~~~l~~~~ 355 (392)
++|+++.+++.+++....|+++
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988777655
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.29 E-value=2.6e-11 Score=102.47 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=103.4
Q ss_pred hhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHH---HHHHHHHHHHHHHHHHH
Q 016275 162 SFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFI---YFVLLLFACMLLVESLM 238 (392)
Q Consensus 162 ~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~---~~~l~~~l~~~~~~~~g 238 (392)
...+|+..++|-+.++. ++..++++|.+......+++..+...+.+ +.|++.+. .+. .++++..+.......+|
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~-~~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~ 89 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIAL-ALGFRFRN-GVAAALLFLLIPSIFGIAFAALV 89 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889998888 99999999999999999999988888885 45887653 333 33333344556666777
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHh
Q 016275 239 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFK 299 (392)
Q Consensus 239 ~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~ 299 (392)
..++...++.+. ....+.+.+|+.++||.++|.+++|+ |.+++.+++|++|+.|++..
T Consensus 90 ~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 90 MAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence 777666666554 43457788999999999999999998 89999999999999999864
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.27 E-value=4e-10 Score=104.72 Aligned_cols=169 Identities=19% Similarity=0.252 Sum_probs=124.4
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-H
Q 016275 165 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVA-S 243 (392)
Q Consensus 165 ~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~-~ 243 (392)
+++..+.|-..++. +...+++++.+.......+...+...+..++.|.. ....+.....++.+......++|.+++ .
T Consensus 115 ~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 192 (286)
T COG0842 115 REFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTF 192 (286)
T ss_pred HhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666 43556666666666555555555555666667743 334566666777777788888888666 3
Q ss_pred hccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhcc
Q 016275 244 LVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQL 323 (392)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~ 323 (392)
..++.+.+....+.+..++.+++|.++|.+.+|+ |.+++.+++|.+|+.+++......+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~~~----------------- 253 (286)
T COG0842 193 AKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGGWR----------------- 253 (286)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCCCc-----------------
Confidence 5566788888888999999999999999999998 788899999999999999665543311
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 324 QMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 324 ~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
..+.+.++++++++.+++.+++...+|++++
T Consensus 254 --~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 254 --NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1127889999999999999999888887654
No 19
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=1.7e-07 Score=85.98 Aligned_cols=237 Identities=16% Similarity=0.107 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHhhccCCCC---hhhHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 016275 89 LTQCIVLTSRSFVNMYRD-LGYYWFRLGVYVLLGIGLATVFSNLGTD---NNSIQARGSLLMFVASYLTFMTIGGFPSFV 164 (392)
Q Consensus 89 ~~q~~~l~~R~~~~~~R~-~~~~~~~~~~~~~~~ll~G~~f~~~~~~---~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 164 (392)
+...+.|.+|+++...|+ .-...-.++.|.++.++++.+|...-.. .--.+-..|++.......+ ...+...+.
T Consensus 17 ~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~~--i~~~~~s~~ 94 (263)
T COG1682 17 RRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSEA--ISEGAGSVV 94 (263)
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH--HHhHHHHhh
Confidence 455677889999965554 4445556777777777777777654221 1112222333321111000 001222333
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016275 165 EDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASL 244 (392)
Q Consensus 165 ~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~ 244 (392)
.+..+++|-+ .++..+.+++++.++....+..++.....-+ .|..+ ..++......+.+..+.+.++|+++|.+
T Consensus 95 ~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~-~~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l 168 (263)
T COG1682 95 ANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLII-LGVEP-SWHWLLLLPALLLLILFSVGLGLILASL 168 (263)
T ss_pred hhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444332 2788899999999987777666555544443 33333 3455555566666677777888888877
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccc
Q 016275 245 VPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQ 324 (392)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~ 324 (392)
.....--..+...++.+++..+|.++|.+.+|+ .++ ++.++||+.+.+|.....-+.+...
T Consensus 169 ~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~-~~~-~~~~~NP~~~iie~~R~~~~~~~~~----------------- 229 (263)
T COG1682 169 GVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPE-QLR-ELVLLNPLTHIIESFRAPLLGGDVP----------------- 229 (263)
T ss_pred hhhcccHHHHHHHHHHHHHHhCceeeehhhccH-HHH-HHHHHCcHHHHHHHHHHHHhCCCcc-----------------
Confidence 665554555667778889999999999999998 454 4999999999999997776544211
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 325 MGYSKWVDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 325 ~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
.+.+.....++.++..++++...++.+|
T Consensus 230 ----~~~~~~~~~~~~li~l~vg~~~~~~~~~ 257 (263)
T COG1682 230 ----DLHLLVYILLLTLILLFVGLLLFRKFRK 257 (263)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344445556666666667666665543
No 20
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.84 E-value=1e-06 Score=80.29 Aligned_cols=219 Identities=15% Similarity=0.116 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhcc---CCCChhhHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 016275 93 IVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSN---LGTDNNSIQARGSLLMFVASYLTFMTIGGFPSFVEDMKV 169 (392)
Q Consensus 93 ~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~---~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~er~~ 169 (392)
+.+.+|+++.+.|+|.....-.+..++.|+.......+ ...+..+.....+...+. ........++ ..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~p~l~~-------~~ 72 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFLWVFPGDFNILDYGYADLTPFFSLAPWV--FLFLIPAITM-------RS 72 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcCcchHHHHHHHHHHH--HHHHHHHHHH-------HH
Confidence 46889999999999998877777766666443221111 111122222222221111 1111111122 33
Q ss_pred HHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHhh---hhchheeeccccc---cchhhHHHHHHHHHHHHHHHH
Q 016275 170 FERERLNGH--------YGATAFVFGNTFSALPYLALISL---IPGAIVYYLPGLH---EGYQHFIYFVLLLFACMLLVE 235 (392)
Q Consensus 170 ~~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~---i~~~i~y~l~g~~---~~~~~f~~~~l~~~l~~~~~~ 235 (392)
+.+||++|. -+...++++|.++.+...++..+ ++.... ...|.+ .+.+.+....+..++.+.+..
T Consensus 73 ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 73 FAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTI-YQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 445555554 38899999999998755443332 111111 112222 245555555666677777889
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCC--CccccccccccccHHHHHHHHhHhhhcCCCccCCCCCH
Q 016275 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDL--PHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDG 313 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~i--P~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g 313 (392)
++|.++|++.++...|..++..+...+ +.|... ..++ |+ |.+|+.++||.+|..+.. +|.
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l--~~~~~~-l~~~~~~~--~~~~l~~~sp~~~~~~~~-----~g~-------- 213 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLF--YFGFDG-LASLLWGG--SAYTISELGLSYHYESIS-----RGV-------- 213 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHH--HHHHHH-Hhhhcchh--HHHHHHHcCHHHHHHHHH-----cCc--------
Confidence 999999999988877765554433222 222221 2334 55 667799999987765544 110
Q ss_pred HHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016275 314 EQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKT 353 (392)
Q Consensus 314 ~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~ 353 (392)
+ .+.++...+.+.+++..++...+++
T Consensus 214 ---------i-----~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 214 ---------I-----DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ---------c-----cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 2566777788888888888776654
No 21
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.62 E-value=5.2e-06 Score=77.15 Aligned_cols=169 Identities=15% Similarity=0.227 Sum_probs=95.5
Q ss_pred HHHHHHhhCCC--------CchHHHHHHHHHHHhhHHH---HHhhhhch---heeeccccccchhhHHHHHHHHHHHHH-
Q 016275 168 KVFERERLNGH--------YGATAFVFGNTFSALPYLA---LISLIPGA---IVYYLPGLHEGYQHFIYFVLLLFACML- 232 (392)
Q Consensus 168 ~~~~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~---~~~~i~~~---i~y~l~g~~~~~~~f~~~~l~~~l~~~- 232 (392)
..+.+|+++|. +++..++++|.+......+ +...+... ......|.+.+...+....+...+..+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 35667776665 5899999999999887632 22111111 111124555555555554444443433
Q ss_pred --HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--cccccccHHHHHHHHhHhhhcCCCcc
Q 016275 233 --LVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFR-LPNDLPHPFWK--YPLYYIAFHKYAYQGMFKNEFEGLKF 307 (392)
Q Consensus 233 --~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~iP~~~w~--~~l~~lsp~~y~~~al~~~~~~~~~~ 307 (392)
+..+++.++|+++++...|...+..+.....+...... ..++....-|. ..+.+++|..+..... .....+.
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~-- 244 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPFNLLI-GSILGGG-- 244 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHHHHHH-HHhhccc--
Confidence 45899999999999888777776665544433333321 11111110011 1146677765432222 1211110
Q ss_pred CCCCCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016275 308 DNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 308 ~~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
+.....|.++++++++.+++.++++..+++|+
T Consensus 245 ----------------~~~~~~~~~~~~~~~~~~v~l~la~~~F~rrD 276 (277)
T PF12679_consen 245 ----------------FVWLSTWPSLLILLAYTLVFLALAYYRFQRRD 276 (277)
T ss_pred ----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00023788999999999999999997776553
No 22
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.60 E-value=6.6e-06 Score=75.93 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcc
Q 016275 228 FACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF 307 (392)
Q Consensus 228 ~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~ 307 (392)
++..+.+.++|+++|.+..-..-...+...++.+++..||.+.|.+.+|+ +.+++.+.||+.+.+|+....-+.+..
T Consensus 156 ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~--~~~~il~~NPl~~~ie~~R~~~~~~~~- 232 (264)
T PRK15176 156 VIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPY--SLLSIFSWNPLLHANEIVREGMFEGYH- 232 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcH--HHHHHHHHCcHHHHHHHHHHHHhcCcC-
Confidence 33445555777776655433333444556677888999999999999998 334488999999999999776654421
Q ss_pred CCCCCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016275 308 DNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 308 ~~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
. .+.+.....++.++..++++...|+.+
T Consensus 233 -----------------~---~~~~~~~~~~~~~~~l~~G~~~~~~~~ 260 (264)
T PRK15176 233 -----------------S---LYLEPFYPLAFSATLFLAGLIFHLICD 260 (264)
T ss_pred -----------------c---cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 122335666777777777777666543
No 23
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.48 E-value=2.5e-08 Score=94.91 Aligned_cols=156 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHH--HHHHHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccc---cccchhhHHHHHHHHHHHHHHHHHHH
Q 016275 164 VEDMK--VFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPG---LHEGYQHFIYFVLLLFACMLLVESLM 238 (392)
Q Consensus 164 ~~er~--~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g---~~~~~~~f~~~~l~~~l~~~~~~~~g 238 (392)
.+||. +..|-+.+|. +...|++++.+..+...++..++...+ +.| ++.. ++...++.+++..++..+++
T Consensus 183 ~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 256 (344)
T PF12698_consen 183 VEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFG 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHH
Confidence 44544 4555557776 999999999999999988888776654 445 4433 55556677888889999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHH
Q 016275 239 MIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLR 318 (392)
Q Consensus 239 ~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~ 318 (392)
.+++.++++...+..+..++.++...++|.++|.+++|+ +.+++.++.|.+|..+++....+
T Consensus 257 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~P~~~~~~~~~~~~~---------------- 318 (344)
T PF12698_consen 257 FLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS--FLQWISSFLPFYWFIQGLRNIIY---------------- 318 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH--HHHHHHHHhhHHHHHHHHHHHHH----------------
Confidence 999999999988888877777767777888888889998 55669999999999888754431
Q ss_pred hhhccccCchhHHHHHHHHHHHHHHHHHHH
Q 016275 319 DKWQLQMGYSKWVDLAILFGMVVFYRLVFL 348 (392)
Q Consensus 319 ~~~~~~~~~~~~~~~~iL~~~~v~~~~la~ 348 (392)
|. ..+.+.++++++++.+++.+++.
T Consensus 319 ---~~--~~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 319 ---GD--WSEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp ------------------------------
T ss_pred ---hc--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11266788888888888877664
No 24
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=98.19 E-value=7.8e-05 Score=66.64 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhH-HHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 016275 92 CIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSI-QARGSLLMFVASYLTFMTIGGFPSFVEDMKVF 170 (392)
Q Consensus 92 ~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~er~~~ 170 (392)
++.+++|+++.-+|++.....-+...+....++...+ +.+.+.. +...|++..+..+....+.+ ..|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al---~~~~~~l~~~~~gllWi~~lfa~~l~~~---------r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFAL---GPDPDLLARVAPGLLWIALLFASLLGLN---------RSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhc---CCchhHHHHHhHHHHHHHHHHHHHHHhh---------HhH
Confidence 4678999999999999887766666666655555443 3332222 33446666554444433322 457
Q ss_pred HHHhhCCC--------CchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016275 171 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVA 242 (392)
Q Consensus 171 ~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~ 242 (392)
.+|+++|. .++..++++|.+.......+..++...+...+.|.+. ..+..+.+.+.+.+.....+|.+.+
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a 146 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA 146 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888876 2577899999999987776666665555555667653 4555666666677777778888777
Q ss_pred HhccchHHHHHHHHHHHHHH
Q 016275 243 SLVPNYLTGIITGAGIQGLM 262 (392)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~ 262 (392)
+++-+......+.++...|+
T Consensus 147 al~~~~r~~~~Ll~lL~lPl 166 (215)
T PF03379_consen 147 ALAAGARGREILLPLLLLPL 166 (215)
T ss_pred HHHHhccccCHHHHHHHHHH
Confidence 66554444444555555544
No 25
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=97.78 E-value=4.7e-05 Score=59.56 Aligned_cols=49 Identities=16% Similarity=0.400 Sum_probs=43.6
Q ss_pred CCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016275 311 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPV 360 (392)
Q Consensus 311 ~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~ 360 (392)
.+|++||+..++++.++ .|+|++|+++|+++|.++.++++.+.+..+..
T Consensus 31 V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~ 79 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSG 79 (103)
T ss_pred EeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 68999999768998886 99999999999999999999999988766653
No 26
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=97.70 E-value=0.0021 Score=56.92 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=95.2
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHH-HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHh
Q 016275 96 TSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQA-RGSLLMFVASYLTFMTIGGFPSFVEDMKVFERER 174 (392)
Q Consensus 96 ~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~er~~~~rE~ 174 (392)
.+|+++.-+|++.....-++..++...++..-+ +.+.+..+. ..|++.....+....+.+ ..|.+|+
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la~---gp~~~~l~~~apgilWva~lfa~ll~l~---------rlF~~d~ 69 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFGV---GPELKLLSRIAPGIVWVGALLSSLLSLD---------RLFRDDF 69 (211)
T ss_pred cHHHHHHHHcccchHHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHH
Confidence 589999999999877665655555555544433 333333333 346666555555444432 5778888
Q ss_pred hCCC--------CchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016275 175 LNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVP 246 (392)
Q Consensus 175 ~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~ 246 (392)
++|. .+....+++|.++......+...+...+.-.+.|++. .....+.+.+.+.+.....+|.+.++++-
T Consensus 70 e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt~ 147 (211)
T TIGR01190 70 EDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALTV 147 (211)
T ss_pred hCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8885 3778889999999876665555555544444667653 34455666777777777788887777655
Q ss_pred chHHHHHHHHHHHHHH
Q 016275 247 NYLTGIITGAGIQGLM 262 (392)
Q Consensus 247 ~~~~a~~~~~~~~~~~ 262 (392)
+......+.+++.+|+
T Consensus 148 g~r~~~~Ll~lL~lPl 163 (211)
T TIGR01190 148 GLKRGGLLLSLLVLPL 163 (211)
T ss_pred hccCCchHHHHHHHHH
Confidence 4333333444444443
No 27
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.68 E-value=0.0038 Score=58.06 Aligned_cols=244 Identities=16% Similarity=0.174 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhc---cCCC-ChhhHHHHHHH---HHHHHHHHH-HHhhcCCch
Q 016275 91 QCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFS---NLGT-DNNSIQARGSL---LMFVASYLT-FMTIGGFPS 162 (392)
Q Consensus 91 q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~---~~~~-~~~~~~~~~g~---l~~~~~~~~-~~~~~~~~~ 162 (392)
+...+.+++++...|+|.............++.....+. .... .........+. ......+.. +....+.
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 80 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPLLAILLGA-- 80 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHcc--
Confidence 477888999999999998877766444455555444442 1111 11000000011 100111111 1111222
Q ss_pred hhHHHHHHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHhhhhc--h-heeecccccc---chhhHHHHHHHHH
Q 016275 163 FVEDMKVFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPG--A-IVYYLPGLHE---GYQHFIYFVLLLF 228 (392)
Q Consensus 163 ~~~er~~~~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~i~~--~-i~y~l~g~~~---~~~~f~~~~l~~~ 228 (392)
.++.+|+++|. .++.--+.||.+..+...++...+.. . ......|... +......+....+
T Consensus 81 -----~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 155 (278)
T COG1277 81 -----DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSL 155 (278)
T ss_pred -----chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence 34566666665 47788889999888765554444443 1 2233334333 2234566777777
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccC------CCCCCccccccccccccHHHHHHHHhHhhhc
Q 016275 229 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRL------PNDLPHPFWKYPLYYIAFHKYAYQGMFKNEF 302 (392)
Q Consensus 229 l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~ 302 (392)
+...+..+++.+++...++...+...+..+.....+..+.... ....| +...+...+|..+..+.......
T Consensus 156 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~ 232 (278)
T COG1277 156 LYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILL 232 (278)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcc
Confidence 8888889999999999998887777766655544433333211 11111 12226788888877777544433
Q ss_pred CC-CccCCCCCHHHHHHhhhcccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016275 303 EG-LKFDNNLDGEQVLRDKWQLQM-GYSKWVDLAILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 303 ~~-~~~~~~~~g~~~l~~~~~~~~-~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
.. ... .+ .+... ....|.++.+++++.+++..++++..++|+
T Consensus 233 ~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 233 QSGFSD----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred cccccc----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 000 00 11111 113788999999999999999998887664
No 28
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.41 E-value=0.012 Score=52.37 Aligned_cols=239 Identities=15% Similarity=0.082 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChh-----hHHHHHHHHHHHHHHHHHHhhcCCc
Q 016275 87 DFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNN-----SIQARGSLLMFVASYLTFMTIGGFP 161 (392)
Q Consensus 87 s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~-----~~~~~~g~l~~~~~~~~~~~~~~~~ 161 (392)
.+++..+.+++-.+.....-+...+.-.+...+-+++.+.++-.+-++.. +..+..++.+.+-.....+...+.-
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~ 82 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW 82 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666665555555555555555555555545543322211 1233333333222222222222222
Q ss_pred hhhHHHHHHHHHhhCCC-----CchHHHHHHHHHHHh--------hHHHHHhhhhchheeeccccccchhhHHHHHHHHH
Q 016275 162 SFVEDMKVFERERLNGH-----YGATAFVFGNTFSAL--------PYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLF 228 (392)
Q Consensus 162 ~~~~er~~~~rE~~~g~-----Y~~~~y~~a~~l~~l--------~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~ 228 (392)
. |.+|-..|. -++..|.......+. |..++-..++....-... .-.+......+.+.+.
T Consensus 83 e-------f~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~-~~l~~~~l~~~~l~la 154 (268)
T COG4587 83 E-------FEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAIL-QFLSPWTLYLFVLALA 154 (268)
T ss_pred H-------HHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHh-hcCCHHHHHHHHHHHH
Confidence 2 334433332 244455544444443 333332323221111001 1123333333333333
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccC
Q 016275 229 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD 308 (392)
Q Consensus 229 l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~ 308 (392)
+....-..+...+++.+=-.+.|+.+....-....++||.+.|++-.|+ |.+-+--..|+-|.+.-=
T Consensus 155 ~~~~~~F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~P----------- 221 (268)
T COG4587 155 LLFLLRFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYTP----------- 221 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhccH-----------
Confidence 3333333444444443333456788888877888899999999999999 666566777777755321
Q ss_pred CCCCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016275 309 NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV 354 (392)
Q Consensus 309 ~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~ 354 (392)
...+-.. .+.+ ..+.+.++.+++..++.++.-...|+.
T Consensus 222 -----~~llvGk--~s~~-~il~al~v~~~Wl~im~~l~~~lWrrg 259 (268)
T COG4587 222 -----VMLLVGK--YSGA-QILKALLVQIGWLLIMWLLSRWLWRRG 259 (268)
T ss_pred -----HHHHhcc--ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 1112 388899999999999988886655543
No 29
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=96.99 E-value=0.024 Score=55.35 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHhhHHHHHhhhhchheeecccccc--ch--hhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 016275 180 GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHE--GY--QHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITG 255 (392)
Q Consensus 180 ~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~--~~--~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~ 255 (392)
+...+++-|.+......++.+++++.+. +..+++. .. ++|+.+|...++...+.....-.+..+.+..- ..+.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence 8888899999988888888888888777 4555543 23 45888877766655433222222223333322 2222
Q ss_pred HHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhHHHHHH
Q 016275 256 AGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAI 335 (392)
Q Consensus 256 ~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~i 335 (392)
.++.+.+.+.+ .+.|.+-.|. +++| .+-+ |++.+++++...-|++.+ ....+++++
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~~~--------------------~~lg~n~gi 372 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDTCK--------------------GQLGRNYGI 372 (382)
T ss_pred HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCCCc--------------------ccccchHHH
Confidence 22333444555 4569999998 7775 4444 999999999888665422 137788899
Q ss_pred HHHHHHHH
Q 016275 336 LFGMVVFY 343 (392)
Q Consensus 336 L~~~~v~~ 343 (392)
|+++.++-
T Consensus 373 l~aw~~v~ 380 (382)
T PF12051_consen 373 LFAWIVVN 380 (382)
T ss_pred HHHHHHHH
Confidence 99988764
No 30
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=96.98 E-value=0.28 Score=44.84 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHhhHHHHHhhhhchhee----ecc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016275 179 YGATAFVFGNTFSALPYLALISLIPGAIVY----YLP-GLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPN 247 (392)
Q Consensus 179 Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y----~l~-g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~ 247 (392)
.+...+++||++..+...++..++...+.. ++. +-+.+...+....+.+++.++....+.+.++....+
T Consensus 85 ~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~ 158 (248)
T TIGR03733 85 KSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM 158 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 478899999999887666665543222221 111 123344566666777788888889999999988775
No 31
>COG1511 Predicted membrane protein [Function unknown]
Probab=96.89 E-value=0.014 Score=62.17 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=109.3
Q ss_pred hhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 016275 174 RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGII 253 (392)
Q Consensus 174 ~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~ 253 (392)
...+.+...-|++++.+..+.....+..+.....+++.|+... .-+.+++..+.+++++..+-..+..++.+. +..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~--~~~~~~~~~i~~s~~f~~ii~~lv~~~g~~--g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK--SPLLLVLFAIFSSVAFMIIIYLLVSLFGNP--GKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC--chhHHHHHHHHHHHHHHHHHHHHHHHhCcc--hHH
Confidence 5667788889999999999988888888888777777777643 333455555556666656555555565643 455
Q ss_pred HHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhHHHH
Q 016275 254 TGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDL 333 (392)
Q Consensus 254 ~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 333 (392)
+..++++.++..+|-..|.+..|. +++. +....|++|++..+..... +.- ....|...
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~~-------------------~~~-~~~~~~~~ 743 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVIG-------------------GPI-PSNLWSGL 743 (780)
T ss_pred HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhhc-------------------cCc-hHHHhhhH
Confidence 555666778888888899999998 5655 9999999999766632221 111 11377788
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhccccc
Q 016275 334 AILFGMVVFYRL-VFLGIIKTVEKMKPV 360 (392)
Q Consensus 334 ~iL~~~~v~~~~-la~~~l~~~~~~~~~ 360 (392)
+++.++.+++++ +.++.+....+.+.+
T Consensus 744 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 771 (780)
T COG1511 744 LALIGFLILFIIGGLFLKLPLDKKLKKV 771 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888777776 444444444443333
No 32
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.034 Score=48.29 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHH-HHHHHHHHHHHHHHHHhhcCCchhhHHHH
Q 016275 90 TQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQ-ARGSLLMFVASYLTFMTIGGFPSFVEDMK 168 (392)
Q Consensus 90 ~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~er~ 168 (392)
..++.+++|++|.-+|.+.....-+........++..-+ |.+.+-.. --.|++.......+..+. ..
T Consensus 2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~~v---Gpd~~~la~iaPgilWia~lLA~lL~l---------~r 69 (221)
T COG2386 2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPLAV---GPDPQLLARIAPGILWIAALLASLLGL---------ER 69 (221)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc---CCchhHHHHhcchHHHHHHHHHHHHhH---------HH
Confidence 356789999999999999887666666555555554433 33322222 223555544333333222 25
Q ss_pred HHHHHhhCCCC--------chHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016275 169 VFERERLNGHY--------GATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 169 ~~~rE~~~g~Y--------~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
.|.+|+++|.- ....-+++|+++....+.+.-++..-+.+.+.|++. +.+....+.+.+.+...+.+|..
T Consensus 70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~~--~~~~~~~ltLllGtp~ls~~ga~ 147 (221)
T COG2386 70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMDV--GALGALALTLLLGTPALSFLGAV 147 (221)
T ss_pred HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCH--hHHHHHHHHHHhcchHHHHHHHH
Confidence 78999999862 445567899999877776666666666666777763 45555556666666666666666
Q ss_pred HHHhccchHHHHHHHHHHHHHH
Q 016275 241 VASLVPNYLTGIITGAGIQGLM 262 (392)
Q Consensus 241 i~~~~~~~~~a~~~~~~~~~~~ 262 (392)
.+++.-+....-.+.++++.|.
T Consensus 148 gaALtv~lrrgglLl~vlvlPl 169 (221)
T COG2386 148 GAALTVGLRRGGLLLSVLVLPL 169 (221)
T ss_pred HHHHHhcCccCCchhhHHHHHH
Confidence 6655444433334444444443
No 33
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.46 E-value=0.0062 Score=42.89 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=39.0
Q ss_pred CCHHHHHHhhhccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 311 LDGEQVLRDKWQLQMG-YSKWVDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 311 ~~g~~~l~~~~~~~~~-~~~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
.-|+++|++ .|+..+ +++|..+++|+|+.++|.++..++|.+.+.
T Consensus 11 tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p 56 (65)
T PF08370_consen 11 TLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNP 56 (65)
T ss_pred cHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468999999 677654 469999999999999999999999998874
No 34
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.17 E-value=0.22 Score=58.38 Aligned_cols=183 Identities=11% Similarity=0.112 Sum_probs=105.4
Q ss_pred cCCchhhHHHHHHHHH--hhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHH
Q 016275 158 GGFPSFVEDMKVFERE--RLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVE 235 (392)
Q Consensus 158 ~~~~~~~~er~~~~rE--~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~ 235 (392)
..+.....||..=.|| +.-|+ +.+.|++|+++..+...++.+++.+++.. .+--.....++..++++++.+++..
T Consensus 669 ~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I 745 (2272)
T TIGR01257 669 MTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATI 745 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHH
Confidence 3345566788777777 56666 88999999999988766665555444322 1111122345566677777888889
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhccc-ccCCCCCCccccccccccccHHHHHHHHhHhhhcC----CCccCCC
Q 016275 236 SLMMIVASLVPNYLTGIITGAGIQGLMILGGGF-FRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFE----GLKFDNN 310 (392)
Q Consensus 236 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~-~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~----~~~~~~~ 310 (392)
.++.++++++.+...|..++.++.+.+.+--.+ +.-.+.++. ...+.+.-++|.-+++..-....++ |..+..
T Consensus 746 ~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~-~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n- 823 (2272)
T TIGR01257 746 MQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTA-DLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSN- 823 (2272)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCH-HHHHHHHhcCHHHHHHHHHHHHHHhhhCCCccccc-
Confidence 999999999999999988888876554332111 112233443 1222366777877666544333332 222210
Q ss_pred CCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 016275 311 LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGII 351 (392)
Q Consensus 311 ~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l 351 (392)
+.+. -..+.+.+....+++|++=.+++.++++..=
T Consensus 824 -----~~~~-~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld 858 (2272)
T TIGR01257 824 -----IGNS-PLEGDEFSFLLSMKMMLLDAALYGLLAWYLD 858 (2272)
T ss_pred -----cccc-ccCCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0001111245556666776777777766543
No 35
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=95.49 E-value=1 Score=40.48 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHH-hhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 016275 180 GATAFVFGNTFSA-LPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI 258 (392)
Q Consensus 180 ~~~~y~~a~~l~~-l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~ 258 (392)
+...+.+.+-+.. ....++..++.........+.+.+..+++.+.+.+++..+...++..+++..+=-......+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~--- 148 (229)
T PF06182_consen 72 NYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS--- 148 (229)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 5555555554443 222333333322223333567777788888887777777777777777776533222233332
Q ss_pred HHHHHHhcccccCCCCCCccccccccccccHHHHHHHH
Q 016275 259 QGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQG 296 (392)
Q Consensus 259 ~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~a 296 (392)
.....+++|...|.+-.|+ +.+..+.++.|+.|....
T Consensus 149 ~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~ 185 (229)
T PF06182_consen 149 YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYV 185 (229)
T ss_pred HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHH
Confidence 2334458999999999999 344435555898876554
No 36
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=1.2 Score=43.20 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhccCCC
Q 016275 106 DLGYYWFRLGVYVLLGIGLATVFSNLGT 133 (392)
Q Consensus 106 ~~~~~~~~~~~~~~~~ll~G~~f~~~~~ 133 (392)
|+..++.-.+...+++++.|.+|.++++
T Consensus 296 ~Rg~lI~W~v~~fllglvygs~fg~l~~ 323 (536)
T COG3559 296 NRGSLILWTVGLFLLGLVYGSVFGGLGD 323 (536)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445556667778899999999987753
No 37
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=95.33 E-value=0.92 Score=39.70 Aligned_cols=84 Identities=27% Similarity=0.410 Sum_probs=46.1
Q ss_pred HHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHhhhhchhee---ecccc-ccchhhH----HHHHHHHHHHHH
Q 016275 169 VFERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVY---YLPGL-HEGYQHF----IYFVLLLFACML 232 (392)
Q Consensus 169 ~~~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y---~l~g~-~~~~~~f----~~~~l~~~l~~~ 232 (392)
.+.+|+++|. .++..++.+|.++.....++..++...+.+ .+.+. +.+...+ ..+.+..++...
T Consensus 69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (232)
T PF12730_consen 69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSL 148 (232)
T ss_pred HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence 4556666665 378999999999987666555554333322 22232 2222222 233334444444
Q ss_pred HHHHHHHHHHHhccchHHHHH
Q 016275 233 LVESLMMIVASLVPNYLTGII 253 (392)
Q Consensus 233 ~~~~~g~~i~~~~~~~~~a~~ 253 (392)
....+ .+++...+|...+..
T Consensus 149 ~~~~~-~~i~~~~~~~~~~i~ 168 (232)
T PF12730_consen 149 FISLL-LFISSLFRNSIVAII 168 (232)
T ss_pred HHHHH-HHHHHHHhhHHHHHH
Confidence 44455 777888887554443
No 38
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.48 E-value=1.1 Score=44.08 Aligned_cols=116 Identities=15% Similarity=0.001 Sum_probs=67.8
Q ss_pred hCCCCchHHHHHHHHHHHhhHHHHHhhhhchhee---------eccc--cccchhhHHHHHHHHHHHH-HHHHHHHHHHH
Q 016275 175 LNGHYGATAFVFGNTFSALPYLALISLIPGAIVY---------YLPG--LHEGYQHFIYFVLLLFACM-LLVESLMMIVA 242 (392)
Q Consensus 175 ~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y---------~l~g--~~~~~~~f~~~~l~~~l~~-~~~~~~g~~i~ 242 (392)
.++. ++..++.||++.-....+++..++.+.++ ...+ +......+..+.+...+.+ +...+++.+++
T Consensus 224 ssPv-Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~ 302 (407)
T COG1668 224 SSPV-SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLG 302 (407)
T ss_pred ccCc-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 99999999999999998888777666652 1111 1222333434444444444 44455888899
Q ss_pred HhccchHHHHHHHHHHHHHH-----HHhcccccCCCCCCccccccccccccHHHHH
Q 016275 243 SLVPNYLTGIITGAGIQGLM-----ILGGGFFRLPNDLPHPFWKYPLYYIAFHKYA 293 (392)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~-----~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~ 293 (392)
.++++.+.|+.....+..+. .+..+...|...+.. +..++.+++|+.=.
T Consensus 303 ~~a~~~k~aq~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~--~ls~IPf~~p~~~~ 356 (407)
T COG1668 303 AMAGSIKEAQTLISPLTFLAIIAFLPLSFISAAPDNAVAL--ILSAIPFLLPVAML 356 (407)
T ss_pred HHhcCHHHHHHHhhHHHHHHHHHHHHHHHhccCCcchhHH--HHhhccchhHHHHH
Confidence 99999988888877332222 223334445554543 33335555554433
No 39
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=92.30 E-value=1.1 Score=52.79 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=68.9
Q ss_pred chhhHHHHHHH--HHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccc--cchhhHHHHHHHHHHHHHHHHH
Q 016275 161 PSFVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLH--EGYQHFIYFVLLLFACMLLVES 236 (392)
Q Consensus 161 ~~~~~er~~~~--rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~--~~~~~f~~~~l~~~l~~~~~~~ 236 (392)
.....||..=. -..-+|. ++.+|+++.++.++...++..+++.++++ .++.. .+...+...++++++.+++...
T Consensus 1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~-~f~~~~~~~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257 1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFI-GFQKKAYTSPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhChhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 33445666433 3467887 99999999999999888777777665554 33321 1234566667788889999999
Q ss_pred HHHHHHHhccchHHHHHHHHHH
Q 016275 237 LMMIVASLVPNYLTGIITGAGI 258 (392)
Q Consensus 237 ~g~~i~~~~~~~~~a~~~~~~~ 258 (392)
+..++|.++++...|......+
T Consensus 1777 ~tYl~SflF~~~~~A~~~~~~i 1798 (2272)
T TIGR01257 1777 MMYPASFLFDVPSTAYVALSCA 1798 (2272)
T ss_pred HHHHHHHhhCCchhHHHHHHHH
Confidence 9999999999998887654433
No 40
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=91.74 E-value=10 Score=34.48 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHhhhhchhee---eccccc-cchhhHHHHHHHHHHHHHHHHHH
Q 016275 170 FERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVY---YLPGLH-EGYQHFIYFVLLLFACMLLVESL 237 (392)
Q Consensus 170 ~~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y---~l~g~~-~~~~~f~~~~l~~~l~~~~~~~~ 237 (392)
..+|+++|- .+....++||++.-....++..++..+..+ ++.|.. .+...++...+..++.++....+
T Consensus 63 ~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l 142 (241)
T TIGR03732 63 HKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPL 142 (241)
T ss_pred HHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444 367788999999877666555554442222 122311 12334444445555555555566
Q ss_pred HHHHHHhccchHHHHHHHHHHHHH-HHHhcccccCCCCCCccccccccccccHHHHHHHHhH
Q 016275 238 MMIVASLVPNYLTGIITGAGIQGL-MILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMF 298 (392)
Q Consensus 238 g~~i~~~~~~~~~a~~~~~~~~~~-~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~ 298 (392)
-+.++... +.. . ++.+.. ..+..|.+...+ + .| ++.|..|....+.
T Consensus 143 ~l~ls~~~-g~~----~-si~ig~~~~li~g~~~~~~--~--~w-----~~~P~s~~~rl~~ 189 (241)
T TIGR03732 143 CLFLARKF-GMF----V-SILVNLVLGLIFGIVLATK--S--FW-----WLFPYSWPSRLMC 189 (241)
T ss_pred HHHHHHHH-HHH----H-HHHHHHHHHHHHHHHHHcc--C--Ce-----EEechHHHHHHHh
Confidence 66665443 211 1 111111 133345543222 2 23 4677788877774
No 41
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.62 E-value=15 Score=32.87 Aligned_cols=145 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred HHHhhCCC--------CchHHHHHHHHHHHhhHHHHHhhhhchhee---eccccccch--hhHHHHHHHHHHHHHHHHHH
Q 016275 171 ERERLNGH--------YGATAFVFGNTFSALPYLALISLIPGAIVY---YLPGLHEGY--QHFIYFVLLLFACMLLVESL 237 (392)
Q Consensus 171 ~rE~~~g~--------Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y---~l~g~~~~~--~~f~~~~l~~~l~~~~~~~~ 237 (392)
.-|+.+|. +...-.|++|++.-+....+..++.....+ ...|...+. ..++.....-++.+....++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45655555 467777899999877655555333332222 123433332 23344444445556666667
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCccccccccccccHHHHHHHHhHhhhcCCCccCCCCCHHHHH
Q 016275 238 MMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVL 317 (392)
Q Consensus 238 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l 317 (392)
=...+...+|...|..++... |..+- ..-++.|+ | +.|-+|..-..
T Consensus 156 Q~wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~~~~----------------------- 201 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPILPMF----------------------- 201 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhhhhh-----------------------
Confidence 777788888888777766554 32222 23456887 4 66777765111
Q ss_pred HhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016275 318 RDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVE 355 (392)
Q Consensus 318 ~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~ 355 (392)
+...+.-.++..+.+.++++.+.+++.+++++
T Consensus 202 ------~~~l~v~~~i~~~~v~~ll~~l~s~l~~~r~~ 233 (239)
T COG4200 202 ------SGSLSVETGILFLGVLALLFLLSSFLFFKRKK 233 (239)
T ss_pred ------ccccccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11111334555666677777888887777654
No 42
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=86.57 E-value=22 Score=35.56 Aligned_cols=106 Identities=8% Similarity=0.049 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhcCCchh
Q 016275 84 AHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLGTDNNSIQARGSLLMFVASYLTFMTIGGFPSF 163 (392)
Q Consensus 84 ~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 163 (392)
++.+...-...+++.++|...|++..+. -+..|+++.+..-....+.++. .. ...+.+......+++......
T Consensus 242 ~~~k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~~~---~~---~~~~~i~~~~~~ss~~~~~~l 314 (449)
T PF09847_consen 242 FKIKIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPFIFMILSSGDP---LS---LTIFYIIIIGVYSSMMSDALL 314 (449)
T ss_pred eccccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHHhhcCch---hH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444567799999999999988876 4777777766542222122211 11 112222222222233333344
Q ss_pred hHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHHH
Q 016275 164 VEDMKVFERERLNGHYGATAFVFGNTFSALPYLA 197 (392)
Q Consensus 164 ~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~~ 197 (392)
..|++.+.=-+.-+. +...+..+|.+.......
T Consensus 315 ~~E~~~~~~l~sLPi-~~~~~v~sKil~~~~i~~ 347 (449)
T PF09847_consen 315 KIEGEGFEFLRSLPI-KKREFVRSKILIPSIIPS 347 (449)
T ss_pred HHhhhcchhHhhCCC-ChHHHHHHHHHHHHHHHH
Confidence 456665544455555 888899999998764433
No 43
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=69.99 E-value=32 Score=37.72 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=68.5
Q ss_pred hhHHHHHHH--HHhhCCCCchHHHHHHHHHHHhhHHHHHhhhhchheeeccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 016275 163 FVEDMKVFE--RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHEGYQHFIYFVLLLFACMLLVESLMMI 240 (392)
Q Consensus 163 ~~~er~~~~--rE~~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~ 240 (392)
...||..-. -+..+|+ ++.+|+++..+.++...++...+...+++ +.| ......+....+...+.......+..+
T Consensus 319 li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~-~f~-~~~~~~~~~~~~~~~l~~~s~i~l~y~ 395 (885)
T KOG0059|consen 319 LILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVL-IFG-FFAGNNTVIILLLLLLYIRSAIPLTYI 395 (885)
T ss_pred HHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhh-eee-cccccchHHHHHHHHHHHHHHHHHHHH
Confidence 334554433 3478887 89999999999999888877776665555 333 223345566667777778888899999
Q ss_pred HHHhccchHHHHHHHHHHHHHH
Q 016275 241 VASLVPNYLTGIITGAGIQGLM 262 (392)
Q Consensus 241 i~~~~~~~~~a~~~~~~~~~~~ 262 (392)
.+.+++....+.....++....
T Consensus 396 ~s~~f~~~~~~~v~~~i~~~~s 417 (885)
T KOG0059|consen 396 LSFIFSKESTASVILSIYNLIS 417 (885)
T ss_pred HHHHhcCCcCceeehhhHHHHH
Confidence 9999888888877765554433
No 44
>COG4325 Predicted membrane protein [Function unknown]
Probab=64.55 E-value=92 Score=30.21 Aligned_cols=48 Identities=19% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHhhhhchheeeccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016275 197 ALISLIPGAIVYYLPGLHEG-YQHFIYFVLLLFACMLLVESLMMIVASL 244 (392)
Q Consensus 197 ~~~~~i~~~i~y~l~g~~~~-~~~f~~~~l~~~l~~~~~~~~g~~i~~~ 244 (392)
++.+++|++.+.-.+|...+ .+.|.-+..+...+.+...++|.++..+
T Consensus 133 FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisig~~iyfl 181 (464)
T COG4325 133 FLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGALIYFL 181 (464)
T ss_pred HHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444554433 3677777777777777777777777654
No 45
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=63.60 E-value=19 Score=34.08 Aligned_cols=47 Identities=9% Similarity=-0.065 Sum_probs=37.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhc
Q 016275 83 SAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFS 129 (392)
Q Consensus 83 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~ 129 (392)
+...+|..|-...+++.+++++|||...+..++...+..+++|.++.
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~~l 50 (309)
T PRK11026 4 QFTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVCYL 50 (309)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999888777666666666665543
No 46
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=60.81 E-value=10 Score=32.10 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=25.1
Q ss_pred HHHHHhhcChhHH---HHHHHHHHHHHHHHHHhhcc
Q 016275 98 RSFVNMYRDLGYY---WFRLGVYVLLGIGLATVFSN 130 (392)
Q Consensus 98 R~~~~~~R~~~~~---~~~~~~~~~~~ll~G~~f~~ 130 (392)
|.++.++|||... +.-+++|+++++++|..+++
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5688889999644 34577788888888888754
No 47
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=60.52 E-value=1.3e+02 Score=27.01 Aligned_cols=48 Identities=6% Similarity=-0.211 Sum_probs=31.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhc
Q 016275 82 KSAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFS 129 (392)
Q Consensus 82 ~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~ 129 (392)
+..+.++++|++..++-+-+..-+=+.....-++.++++++++|+++.
T Consensus 3 k~k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 3 KPKKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred ccccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678889988877666554333334455666777778888888873
No 48
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=60.11 E-value=1.7e+02 Score=28.22 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhhccCC
Q 016275 84 AHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVFSNLG 132 (392)
Q Consensus 84 ~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f~~~~ 132 (392)
+++.-....+++++|.+|+...||.+-..-++.| .+.+++..++.-.+
T Consensus 133 kQs~~iEsTYyll~~YlKk~l~Dp~~~~~~lGvP-G~~lLiy~i~~l~~ 180 (344)
T PF04123_consen 133 KQSRGIESTYYLLGRYLKKALSDPEYRRTFLGVP-GLILLIYAILALLG 180 (344)
T ss_pred EcCCCcHHHHHHHHHHHHHhhcChhhhceeecch-HHHHHHHHHHHHHc
Confidence 4666788899999999999999999988877677 55554444443333
No 49
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=58.60 E-value=20 Score=22.31 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 016275 108 GYYWFRLGVYVLLGIGLATVF 128 (392)
Q Consensus 108 ~~~~~~~~~~~~~~ll~G~~f 128 (392)
+..+..+..|+++++++|++|
T Consensus 4 Sl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999998
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=57.51 E-value=11 Score=30.64 Aligned_cols=20 Identities=25% Similarity=0.673 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016275 330 WVDLAILFGMVVFYRLVFLG 349 (392)
Q Consensus 330 ~~~~~iL~~~~v~~~~la~~ 349 (392)
|.-++++++++++++++.++
T Consensus 2 W~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHH
Confidence 44444545444444444433
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.13 E-value=18 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 329 KWVDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
.+..+++++|++.+..+++|++.|+++|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666777777766666666665443333
No 52
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=50.94 E-value=2.6e+02 Score=27.75 Aligned_cols=107 Identities=14% Similarity=0.036 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHhhHHHHHhhhhchheeec--cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 016275 180 GATAFVFGNTFSALPYLALISLIPGAIVYYL--PGLHEGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAG 257 (392)
Q Consensus 180 ~~~~y~~a~~l~~l~~~~~~~~i~~~i~y~l--~g~~~~~~~f~~~~l~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~ 257 (392)
+..+-+.|-+...+..+++...+......-. .+.. ....-+.|-..+-..++...++..+.+.+.++.......+-.
T Consensus 124 grlan~~aa~~~ll~~sil~gai~alsLla~~~~~~i-~lags~afgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~ 202 (536)
T COG3559 124 GRLANLTAALLLLLGASILTGAIGALSLLATRYIDDI-ALAGSVAFGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFA 202 (536)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHH
Confidence 4444455555555555555544443332211 2222 222334455566677777777777777777655433332222
Q ss_pred HHHHHHHhcccccCCCCCCccccccccccccHHHHHHH
Q 016275 258 IQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQ 295 (392)
Q Consensus 258 ~~~~~~l~sG~~~~~~~iP~~~w~~~l~~lsp~~y~~~ 295 (392)
.+....+ -=.+-...+ . -+.|+||.-|.+.
T Consensus 203 llG~afl-vRmi~Dvss--~-----~L~WfsPlgW~~~ 232 (536)
T COG3559 203 LLGTAFL-VRMIGDVSS--G-----TLSWFSPLGWSLQ 232 (536)
T ss_pred HHHHHHH-HHHHhcccc--c-----ccccccCccceEE
Confidence 2211111 000112222 1 1889999988543
No 53
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=49.87 E-value=35 Score=32.27 Aligned_cols=46 Identities=11% Similarity=-0.143 Sum_probs=35.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHhh
Q 016275 83 SAHADFLTQCIVLTSRSFVNMYRDLGYYWFRLGVYVLLGIGLATVF 128 (392)
Q Consensus 83 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f 128 (392)
.+.+-|+.|-+..+++.+++++|||......++...+..+++|..+
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~~~ 49 (309)
T TIGR00439 4 HYASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLVMY 49 (309)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999988776666555555555443
No 54
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=47.40 E-value=45 Score=24.71 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 016275 335 ILFGMVVFYRLVFLG 349 (392)
Q Consensus 335 iL~~~~v~~~~la~~ 349 (392)
+++|+.++|.++..+
T Consensus 11 ~v~GM~~VF~fL~lL 25 (82)
T TIGR01195 11 TVLGMGIVFLFLSLL 25 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444443
No 55
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=46.09 E-value=1.9e+02 Score=24.71 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=22.7
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHhhhhchhe
Q 016275 177 GHYGATAFVFGNTFSALPYLALISLIPGAIV 207 (392)
Q Consensus 177 g~Y~~~~y~~a~~l~~l~~~~~~~~i~~~i~ 207 (392)
-..++..+..||.+..+...++..++.....
T Consensus 71 lPvsr~~iV~akyl~~~i~~~~~~l~~~i~~ 101 (206)
T PF13346_consen 71 LPVSRKEIVLAKYLFSLIIILIGSLISLIIA 101 (206)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3358999999999998877766666554443
No 56
>PLN03211 ABC transporter G-25; Provisional
Probab=43.33 E-value=3.7e+02 Score=28.45 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=34.0
Q ss_pred cCCchhhHHHHHHHHHhhCCCCchHHHHHHHHHHHhhHH-HHHhhhhchheeeccccccchhhH-HHHHHHHHHHHHHHH
Q 016275 158 GGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYL-ALISLIPGAIVYYLPGLHEGYQHF-IYFVLLLFACMLLVE 235 (392)
Q Consensus 158 ~~~~~~~~er~~~~rE~~~g~Y~~~~y~~a~~l~~l~~~-~~~~~i~~~i~y~l~g~~~~~~~f-~~~~l~~~l~~~~~~ 235 (392)
...+.+.+|+.. +-+....| ..+..++.+-..+... +..+++|.++..-. +.. .+..| +..+++.+.....+.
T Consensus 463 ~er~v~~rE~~~--~~Y~~~~Y-~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~-~~~-~F~~f~li~~l~~~~~~s~g~ 537 (659)
T PLN03211 463 QERAIFVKERAS--GMYTLSSY-FMARIVGDLPMELILPTIFLTVTYWMAGLKP-ELG-AFLLTLLVLLGYVLVSQGLGL 537 (659)
T ss_pred HhhHHHHHhhhC--CCCCHHHH-HHHHHHHHHHHHHHHHHHHHhheeEcCCCcC-CHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666642 22222333 3345555555554333 33444444444432 332 23333 333343444444444
Q ss_pred HHHHHH
Q 016275 236 SLMMIV 241 (392)
Q Consensus 236 ~~g~~i 241 (392)
.++.++
T Consensus 538 ~i~a~~ 543 (659)
T PLN03211 538 ALGAAI 543 (659)
T ss_pred HHHHHc
Confidence 444443
No 57
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=36.58 E-value=57 Score=22.18 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 016275 335 ILFGMVVFYRLVFLGIIKTVEKMKP 359 (392)
Q Consensus 335 iL~~~~v~~~~la~~~l~~~~~~~~ 359 (392)
+++.+.++..+....+||+-.+.|.
T Consensus 7 lIIviVlgvIigNia~LK~sAk~K~ 31 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAKMKF 31 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcccCC
Confidence 4455566666777778888776443
No 58
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=36.17 E-value=87 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 016275 334 AILFGMVVFYRLVFLG 349 (392)
Q Consensus 334 ~iL~~~~v~~~~la~~ 349 (392)
.+|+.+++++.++..+
T Consensus 17 ~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 17 LVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 59
>PTZ00046 rifin; Provisional
Probab=35.75 E-value=47 Score=31.89 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 329 KWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
+..++.+++.+.+++ ++-|+.||+||+.|
T Consensus 317 IiaSiiAIvVIVLIM-vIIYLILRYRRKKK 345 (358)
T PTZ00046 317 IIASIVAIVVIVLIM-VIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhcch
Confidence 666777777666666 66778899998754
No 60
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.98 E-value=49 Score=31.65 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 329 KWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
+..++.+++.+.+++ ++-|+.||+||++|
T Consensus 312 IiaSiIAIvvIVLIM-vIIYLILRYRRKKK 340 (353)
T TIGR01477 312 IIASIIAILIIVLIM-VIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhcch
Confidence 666777766666666 66778899998744
No 61
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=34.34 E-value=68 Score=23.97 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016275 334 AILFGMVVFYRLVFLGIIK 352 (392)
Q Consensus 334 ~iL~~~~v~~~~la~~~l~ 352 (392)
++++|++++|.++..+.+-
T Consensus 14 lm~~GM~~VF~fL~lLi~~ 32 (85)
T PRK03814 14 LMLTGMGVVFIFLTLLVYL 32 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666555544433
No 62
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=34.29 E-value=1.4e+02 Score=19.77 Aligned_cols=35 Identities=14% Similarity=-0.041 Sum_probs=19.5
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHH-HHHHHHHhhcc
Q 016275 96 TSRSFVNMYRDLGYYWFRLGVYVL-LGIGLATVFSN 130 (392)
Q Consensus 96 ~~R~~~~~~R~~~~~~~~~~~~~~-~~ll~G~~f~~ 130 (392)
.++.++.+.||+..++..++..++ +..++|-.+..
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456667777888877655544433 33344444433
No 63
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.65 E-value=34 Score=27.73 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 016275 335 ILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 335 iL~~~~v~~~~la~~~l~~~~~ 356 (392)
++++++++++++.+++..++++
T Consensus 4 l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444454433
No 64
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=30.71 E-value=95 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=17.9
Q ss_pred HHHHHhh-hccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016275 314 EQVLRDK-WQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTV 354 (392)
Q Consensus 314 ~~~l~~~-~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~ 354 (392)
.+.|++. +-|..++...+++.||..-+++ .+++++.|.+.
T Consensus 17 qE~LEemlW~fR~ED~tpWNysiL~Ls~vv-lvi~~~LLgrs 57 (125)
T PF15048_consen 17 QELLEEMLWFFRVEDATPWNYSILALSFVV-LVISFFLLGRS 57 (125)
T ss_pred HHHHHHHHHheecCCCCCcchHHHHHHHHH-HHHHHHHHHHH
Confidence 3445442 2455444333344444443333 34455555554
No 65
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.91 E-value=60 Score=30.50 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016275 329 KWVDLAILFGMVVFYRLVFLGIIKTVEKMK 358 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~~~ 358 (392)
+..++.+++.+.+++ ++-|+.||+||+.|
T Consensus 258 I~aSiiaIliIVLIM-vIIYLILRYRRKKK 286 (299)
T PF02009_consen 258 IIASIIAILIIVLIM-VIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 455555555555555 45566688877543
No 66
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.60 E-value=1.2e+02 Score=28.36 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=11.9
Q ss_pred cccccccccccCCCCCCC
Q 016275 367 VPMKQTTQIMENPCATPP 384 (392)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~ 384 (392)
++.+++.++.|.+++-||
T Consensus 264 ~p~~~~~d~~~~~~~vpP 281 (281)
T PF12768_consen 264 APTSPRIDEDEMMQRVPP 281 (281)
T ss_pred CCcccccCcccccccCCC
Confidence 444556777778777665
No 67
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.84 E-value=67 Score=22.57 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016275 333 LAILFGMVVFYRLVFLGIIKTVEKMKP 359 (392)
Q Consensus 333 ~~iL~~~~v~~~~la~~~l~~~~~~~~ 359 (392)
++.++|..++|.+.-...-++..++.|
T Consensus 5 lali~G~~~Gff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 344455555555555444444444444
No 68
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=25.11 E-value=2.6e+02 Score=24.42 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 016275 328 SKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAF 364 (392)
Q Consensus 328 ~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~~~~~ 364 (392)
+....++.-+||.++..+++. +|-+-+..++|+++
T Consensus 132 s~~~glg~GlGf~lal~l~a~--iRE~l~~~~vP~~~ 166 (190)
T TIGR01943 132 SIVYAVGAGLGFTLAMVIFAG--IRERLDLSDVPKAF 166 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCCccc
Confidence 355666777777777776664 45554444555554
No 69
>PHA02690 hypothetical protein; Provisional
Probab=24.63 E-value=2.8e+02 Score=20.23 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=14.8
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHhh
Q 016275 98 RSFVNMYRDLGYYWFRLGVYVLLGIGLATVF 128 (392)
Q Consensus 98 R~~~~~~R~~~~~~~~~~~~~~~~ll~G~~f 128 (392)
--++..||||..-.+....+.+..+.+-++|
T Consensus 58 iv~Rl~~RN~gacamlAlaAA~~yLflcL~y 88 (90)
T PHA02690 58 IVFRLIWRNPGACAMLALAAAVYYLFLCLFY 88 (90)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666555444444444444444443
No 70
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=24.46 E-value=3.3e+02 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=18.8
Q ss_pred hCCCCchHHHHHHHHHHHhhHHHHHhhhhc
Q 016275 175 LNGHYGATAFVFGNTFSALPYLALISLIPG 204 (392)
Q Consensus 175 ~~g~Y~~~~y~~a~~l~~l~~~~~~~~i~~ 204 (392)
..|.|...+-.++++..-+|+++...+.+.
T Consensus 3 s~~iYp~i~~~l~~~~g~~PFSvgdi~~~~ 32 (318)
T PF12725_consen 3 SRGIYPVISKLLRRLFGWFPFSVGDILYYL 32 (318)
T ss_pred cCcchHHHHHHHHHhccCcChhHHHHHHHH
Confidence 356677777777777777776665444433
No 71
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=23.47 E-value=7.9e+02 Score=24.96 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHh
Q 016275 181 ATAFVFGNTFSAL 193 (392)
Q Consensus 181 ~~~y~~a~~l~~l 193 (392)
.++|.+..+...+
T Consensus 275 vw~~~l~~~~~~l 287 (495)
T KOG2533|consen 275 VWPFSLCYFFLKL 287 (495)
T ss_pred HHHHHHHHHHHhh
Confidence 3344443333333
No 72
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=22.33 E-value=2.1e+02 Score=21.26 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 016275 335 ILFGMVVFYRLVFLG 349 (392)
Q Consensus 335 iL~~~~v~~~~la~~ 349 (392)
+++|++++|.++.++
T Consensus 14 MvlGMg~VfvFL~lL 28 (82)
T PRK02919 14 MFLGMGFVLAFLFLL 28 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555444443
No 73
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=21.30 E-value=5.6e+02 Score=24.41 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 016275 285 YYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKA 363 (392)
Q Consensus 285 ~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~l~~~~~~~~~~~~ 363 (392)
.|+.-.+|.+-.+-.+-|.|..-. ++ ++-++. ...+-...-+.||+|.+++...+-.+.|+.++.+.++.+|
T Consensus 186 syfds~YyCFITltTIGFGDyVal--Q~-~~alq~----qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr 257 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVAL--QQ-DAALQS----QPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAEDERR 257 (350)
T ss_pred chhhhhheeeeeeeeccccchhhh--cc-hhhhhC----CCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 567777777777777766554321 11 112222 1111133456789999999999999999998777665433
No 74
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.76 E-value=1.5e+02 Score=19.33 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016275 332 DLAILFGMVVFYRLVFLGIIKTV 354 (392)
Q Consensus 332 ~~~iL~~~~v~~~~la~~~l~~~ 354 (392)
....++.+.++|..+.+.+.+.+
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 33445555555555555555433
No 75
>COG4393 Predicted membrane protein [Function unknown]
Probab=20.40 E-value=2.8e+02 Score=26.46 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=10.1
Q ss_pred HHHHHHHHHhccchHHH
Q 016275 235 ESLMMIVASLVPNYLTG 251 (392)
Q Consensus 235 ~~~g~~i~~~~~~~~~a 251 (392)
.-+|..+++..|..+.-
T Consensus 42 ~~~g~~~~~y~pKsq~~ 58 (405)
T COG4393 42 GYFGFFIAAYFPKSQNL 58 (405)
T ss_pred HHHHHHHHHhcccccce
Confidence 35667777766654433
Done!