Query 016275
Match_columns 392
No_of_seqs 155 out of 1758
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 10:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9u_A Receptor tyrosine-prote 30.4 82 0.0028 18.2 4.0 28 329-356 6-33 (40)
2 2ks1_B Epidermal growth factor 24.9 87 0.003 19.3 3.5 11 345-355 29-39 (44)
3 2knc_B Integrin beta-3; transm 18.6 50 0.0017 23.2 1.6 7 362-368 45-51 (79)
4 3arc_L Photosystem II reaction 13.5 2.2E+02 0.0075 16.5 3.5 23 107-129 14-36 (37)
5 2rlw_A PLNF; toxin; NMR {Lacto 11.4 78 0.0027 17.4 0.7 11 16-26 19-29 (34)
6 4h33_A LMO2059 protein; bilaye 9.3 5.5E+02 0.019 19.5 5.5 51 285-350 43-93 (137)
7 2h1z_A Hybrid atracotoxin; bet 8.8 1.2E+02 0.0041 17.8 0.9 12 7-18 6-17 (39)
8 2nwl_A GLTPH, glutamate sympor 8.7 7E+02 0.024 23.3 6.9 63 184-246 44-108 (422)
9 2kv5_A FST, putative uncharact 7.6 3.5E+02 0.012 15.4 2.5 18 110-127 4-21 (33)
10 2iub_A CORA, divalent cation t 7.3 8.3E+02 0.029 22.0 6.7 79 229-307 283-362 (363)
No 1
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=30.38 E-value=82 Score=18.17 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 329 KWVDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 329 ~~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
+...+-++.+..++|.+++--.|.||.+
T Consensus 6 l~malt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEEEccc
Confidence 4556678889999999999888888754
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.91 E-value=87 Score=19.29 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=4.5
Q ss_pred HHHHHHHHHhh
Q 016275 345 LVFLGIIKTVE 355 (392)
Q Consensus 345 ~la~~~l~~~~ 355 (392)
++.++.+|+++
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 33344444443
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.63 E-value=50 Score=23.24 Aligned_cols=7 Identities=14% Similarity=0.079 Sum_probs=2.7
Q ss_pred ccccccc
Q 016275 362 KAFMSVP 368 (392)
Q Consensus 362 ~~~~~~~ 368 (392)
+|+...+
T Consensus 45 ~kFEkE~ 51 (79)
T 2knc_B 45 AKFEEER 51 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=13.47 E-value=2.2e+02 Score=16.52 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Q 016275 107 LGYYWFRLGVYVLLGIGLATVFS 129 (392)
Q Consensus 107 ~~~~~~~~~~~~~~~ll~G~~f~ 129 (392)
+..++..+....++++++..-|+
T Consensus 14 RTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhcc
Confidence 33444455555666666665543
No 5
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=11.40 E-value=78 Score=17.41 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=8.3
Q ss_pred CchhHHHhhhc
Q 016275 16 NPSDHFLKTIN 26 (392)
Q Consensus 16 NPAD~~ld~v~ 26 (392)
.||||.+..+.
T Consensus 19 gpadwvisavr 29 (34)
T 2rlw_A 19 GPADWVISAVR 29 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 58999887653
No 6
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=9.27 E-value=5.5e+02 Score=19.53 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=27.2
Q ss_pred ccccHHHHHHHHhHhhhcCCCccCCCCCHHHHHHhhhccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 016275 285 YYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGI 350 (392)
Q Consensus 285 ~~lsp~~y~~~al~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~iL~~~~v~~~~la~~~ 350 (392)
.|..-+.|++..+...-|.|..- .+........+.+++|..+.-.+++.+.
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P---------------~t~~gr~~~~~~~~~g~~~~~~~~~~i~ 93 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVP---------------VTPIGRILASIMMLFGIAFIGMITSTIT 93 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCC---------------CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCCCCCC---------------CCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888876665544321 0000124455556666665555555554
No 7
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=8.77 E-value=1.2e+02 Score=17.78 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=9.3
Q ss_pred cCCCCCCCCCch
Q 016275 7 NGFPCPALQNPS 18 (392)
Q Consensus 7 ~G~~cP~~~NPA 18 (392)
-|-|||..++|.
T Consensus 6 sgQPCpyN~~pC 17 (39)
T 2h1z_A 6 VDQPCSLNTQPC 17 (39)
T ss_dssp TTSBCCTTSCCB
T ss_pred CCCCCCCCcccc
Confidence 377899888874
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=8.68 E-value=7e+02 Score=23.30 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhHHHHHhhhhchheeeccccc-cchhhH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016275 184 FVFGNTFSALPYLALISLIPGAIVYYLPGLH-EGYQHF-IYFVLLLFACMLLVESLMMIVASLVP 246 (392)
Q Consensus 184 y~~a~~l~~l~~~~~~~~i~~~i~y~l~g~~-~~~~~f-~~~~l~~~l~~~~~~~~g~~i~~~~~ 246 (392)
..++.....+..+++.+++++.+..-+.++. .+.++. ..-.+..++++..+..+|..++.+.+
T Consensus 44 ~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 44 KPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467777778888888888888887777773 344453 22333344455556666766665544
No 9
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=7.58 E-value=3.5e+02 Score=15.43 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016275 110 YWFRLGVYVLLGIGLATV 127 (392)
Q Consensus 110 ~~~~~~~~~~~~ll~G~~ 127 (392)
++..++.|++.|+++-++
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456688888888887765
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=7.28 E-value=8.3e+02 Score=21.97 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccc-cCCCCCCccccccccccccHHHHHHHHhHhhhcCCCcc
Q 016275 229 ACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFF-RLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF 307 (392)
Q Consensus 229 l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~-~~~~~iP~~~w~~~l~~lsp~~y~~~al~~~~~~~~~~ 307 (392)
.+......+...++.-.-......++.+++++|..+.+|++ .|.+.||..-|.+...++.-+.-++.++...-|+-..+
T Consensus 283 ~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 283 IVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
Done!