Query 016275
Match_columns 392
No_of_seqs 155 out of 1758
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 10:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 20.5 63 0.0046 17.3 3.5 22 108-129 15-36 (37)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 17.0 75 0.0055 21.4 4.2 26 331-356 32-57 (100)
3 d2iuba2 f.17.3.1 (A:286-349) M 13.0 1.1E+02 0.0083 18.4 3.9 26 252-277 9-35 (64)
4 d2j9ub1 g.41.11.1 (B:115-161) 11.5 39 0.0028 19.5 0.9 18 4-21 19-39 (47)
5 d1hvwa_ g.3.6.2 (A:) Atracotox 10.9 42 0.003 16.1 0.8 10 8-17 5-14 (26)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 10.5 4.4E+02 0.032 22.0 9.3 29 186-214 35-63 (405)
7 d1e8qa_ g.55.1.1 (A:) Cellulos 9.7 30 0.0022 20.0 0.0 12 3-14 4-15 (46)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.0 1.6E+02 0.012 19.9 3.9 23 334-356 41-63 (107)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 7.6 2.4E+02 0.017 16.7 3.9 27 330-356 5-31 (57)
10 d1ls1a1 a.24.13.1 (A:1-88) Sig 5.9 88 0.0064 20.7 1.0 20 7-26 60-79 (88)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.48 E-value=63 Score=17.25 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 016275 108 GYYWFRLGVYVLLGIGLATVFS 129 (392)
Q Consensus 108 ~~~~~~~~~~~~~~ll~G~~f~ 129 (392)
..++..+....++++++..-|+
T Consensus 15 tsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 3344455556667777665554
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.00 E-value=75 Score=21.39 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 331 VDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 331 ~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
..+.+.+.+.++..++.+...|+|.+
T Consensus 32 v~~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33344455556666777777777654
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.99 E-value=1.1e+02 Score=18.44 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhcccc-cCCCCCCc
Q 016275 252 IITGAGIQGLMILGGGFF-RLPNDLPH 277 (392)
Q Consensus 252 ~~~~~~~~~~~~l~sG~~-~~~~~iP~ 277 (392)
.++.+.+.+|..+.+|++ .+.+.+|.
T Consensus 9 lT~it~iflP~t~i~gifGMN~~~~P~ 35 (64)
T d2iuba2 9 LTIIATIFMPLTFIAGIYGMNFEYMPE 35 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 445566778888888887 56666775
No 4
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=11.45 E-value=39 Score=19.47 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=13.1
Q ss_pred hhhcCCCCCCCCC---chhHH
Q 016275 4 FALNGFPCPALQN---PSDHF 21 (392)
Q Consensus 4 F~~~G~~cP~~~N---PAD~~ 21 (392)
|++-+.++|+..| ||||=
T Consensus 19 ~~~n~~~~p~C~nCGV~~D~e 39 (47)
T d2j9ub1 19 FTKDTLPTPICINCGVPADYE 39 (47)
T ss_dssp CCTTCSSCCBCTTTCCBCCHH
T ss_pred eccCCCCCCcccccCCccCHH
Confidence 5566778888777 78873
No 5
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=10.86 E-value=42 Score=16.14 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=7.1
Q ss_pred CCCCCCCCCc
Q 016275 8 GFPCPALQNP 17 (392)
Q Consensus 8 G~~cP~~~NP 17 (392)
|-|||-++|-
T Consensus 5 gqpcpynenc 14 (26)
T d1hvwa_ 5 GQPCPYNENC 14 (26)
T ss_dssp TSBCSSTTSB
T ss_pred CCcCCCCccc
Confidence 6778877764
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.52 E-value=4.4e+02 Score=22.05 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHhhhhchheeeccccc
Q 016275 186 FGNTFSALPYLALISLIPGAIVYYLPGLH 214 (392)
Q Consensus 186 ~a~~l~~l~~~~~~~~i~~~i~y~l~g~~ 214 (392)
+++....+..+++.++++..+..-+.++.
T Consensus 35 ~g~lFi~lL~m~v~PLIf~sii~gi~~L~ 63 (405)
T d2nwwa1 35 FGDLFVRLLKMLVMPIVFASLVVGAASIS 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555566666666666666655555543
No 7
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=9.68 E-value=30 Score=20.05 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=8.7
Q ss_pred hhhhcCCCCCCC
Q 016275 3 FFALNGFPCPAL 14 (392)
Q Consensus 3 YF~~~G~~cP~~ 14 (392)
+++++||+|=..
T Consensus 4 ws~~lGY~CC~~ 15 (46)
T d1e8qa_ 4 WAQSQGYNCCNN 15 (46)
T ss_dssp SGGGTTCEECSS
T ss_pred cccccCCCcccC
Confidence 467899997543
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=8.95 E-value=1.6e+02 Score=19.89 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 016275 334 AILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 334 ~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
.+.+.+.++..++.+...|+|.+
T Consensus 41 i~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 41 IITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Confidence 33344444555666666676544
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.55 E-value=2.4e+02 Score=16.73 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016275 330 WVDLAILFGMVVFYRLVFLGIIKTVEK 356 (392)
Q Consensus 330 ~~~~~iL~~~~v~~~~la~~~l~~~~~ 356 (392)
|+.++.+..+.++..++...++..-.+
T Consensus 5 ~R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 5 WRAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555544444444444
No 10
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=5.91 E-value=88 Score=20.67 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=17.1
Q ss_pred cCCCCCCCCCchhHHHhhhc
Q 016275 7 NGFPCPALQNPSDHFLKTIN 26 (392)
Q Consensus 7 ~G~~cP~~~NPAD~~ld~v~ 26 (392)
.|-..+++.||.|+++.++.
T Consensus 60 ~g~~v~~~~~p~~~iikiV~ 79 (88)
T d1ls1a1 60 LGKQVLESLTPAEVILATVY 79 (88)
T ss_dssp HHTTTTTCSCHHHHHHHHHH
T ss_pred hHHHhhcCCCHHHHHHHHHH
Confidence 46778999999999998875
Done!