BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016280
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 68 QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTI 126
Q Q+ E L+ L + E++D A D + G+ L+G YL+ A +R +A +++ T
Sbjct: 34 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC 93
Query: 127 VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186
QN Q+ V+ L LL D TVR KAL AIS L+R + G+ F +G+
Sbjct: 94 SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 153
Query: 187 AALRDALGSESVKFQRKALNLIQYLL 212
+ L A+ + K + K+ L+Q LL
Sbjct: 154 SVLMRAMQQQVQKLKVKSAFLLQNLL 179
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Query: 68 QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTI 126
Q Q+ E L+ L + E+ D A D + G L+G YL+ A +R +A +++ T
Sbjct: 50 QAADQQEREGALELLADLCENXDNAADFCQLSGXHLLVGRYLEAGAAGLRWRAAQLIGTC 109
Query: 127 VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186
QN Q+ V+ L LL D TVR KAL AIS L+R + G+ F +G+
Sbjct: 110 SQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169
Query: 187 AALRDALGSESVKFQRKALNLIQYLL 212
+ L A + K + K+ L+Q LL
Sbjct: 170 SVLXRAXQQQVQKLKVKSAFLLQNLL 195
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 132 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 191
R L + +G P L N P +V A+ + +L+ H + A RLA G +
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283
Query: 192 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
L +VKF + +Q L N ++ G P+ ++++
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E M E Q + ++ A L +I
Sbjct: 14 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIA 72
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 73 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 132
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 133 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 191
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 224
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E M E Q + ++ A L +I
Sbjct: 15 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIA 73
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 74 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 133
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 134 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 192
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 193 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 225
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E + E Q + ++ A L +I
Sbjct: 101 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE-FMRENQPEMLQLEAAWALTNIA 159
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 160 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 219
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 220 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E M E Q + ++ A L +I
Sbjct: 15 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIA 73
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 74 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 133
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 134 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 192
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 193 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 225
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E M E Q + ++ A L +I
Sbjct: 13 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIA 71
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 72 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 131
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 132 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 190
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 223
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E M E Q + ++ A L +I
Sbjct: 13 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIA 71
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 72 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 131
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 132 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 190
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 191 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 223
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 16/213 (7%)
Query: 40 MQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIG 99
MQ Q +K + ++ + P V+ GV P+ +E M E Q + ++ A L +I
Sbjct: 14 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEMLQLEAAWALTNIA 72
Query: 100 G-------------LAPL-LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP 145
PL + L ++ +A + + ++ + V++ N +EP
Sbjct: 73 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 132
Query: 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205
+L F S+ +RT A +S+L R KP + ++ L + S + A
Sbjct: 133 ILGLFNSNKPSLIRT-ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 191
Query: 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE 238
I YL + V + P+ ++ L S E
Sbjct: 192 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 224
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%)
Query: 132 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 191
R L + +G P L P +V A+ + +L+ H + A RLA G +
Sbjct: 88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147
Query: 192 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
L +VKF + +Q L N ++ G P+ ++++
Sbjct: 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 35 WFME--AMQSQTVDVIKRMKEITLVMQTPEQVLESQ-------GVTPQDIEDM-LDELQE 84
W ++ ++ +V KRM + L +PE +++ Q GV PQ E L
Sbjct: 341 WLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHI 400
Query: 85 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEANG 142
V + A+D+ + LA G +GE+ T+ QN P + +EA
Sbjct: 401 PVGRVQ-ADDMDELARLADEYG------------SGEIRLTVEQNIIIPNIETSKIEALL 447
Query: 143 LEPLLSNFASDPDVTVR 159
EP+LS F+ DP + ++
Sbjct: 448 KEPVLSTFSPDPPILMK 464
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 35 WFME--AMQSQTVDVIKRMKEITLVMQTPEQVLESQ-------GVTPQDIEDM-LDELQE 84
W ++ ++ +V KRM + L +PE +++ Q GV PQ E L
Sbjct: 341 WLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHI 400
Query: 85 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEANG 142
V + A+D+ + LA G +GE+ T+ QN P + +EA
Sbjct: 401 PVGRVQ-ADDMDELARLADEYG------------SGEIRLTVEQNIIIPNIETSKIEALL 447
Query: 143 LEPLLSNFASDPDVTVR 159
EP+LS F+ DP + ++
Sbjct: 448 KEPVLSTFSPDPPILMK 464
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 35 WFME--AMQSQTVDVIKRMKEITLVMQTPEQVLESQ-------GVTPQDIEDM-LDELQE 84
W ++ ++ +V KRM + L +PE +++ Q GV PQ E L
Sbjct: 341 WLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHI 400
Query: 85 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEANG 142
V + A+D+ + LA G +GE+ T+ QN P + +EA
Sbjct: 401 PVGRVQ-ADDMDELARLADEYG------------SGEIRLTVEQNIIIPNIETSKIEALL 447
Query: 143 LEPLLSNFASDPDVTVR 159
EP+LS F+ DP + ++
Sbjct: 448 KEPVLSTFSPDPPILMK 464
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 35 WFME--AMQSQTVDVIKRMKEITLVMQTPEQVLESQ-------GVTPQDIEDM-LDELQE 84
W ++ ++ +V KRM + L +PE +++ Q GV PQ E L
Sbjct: 341 WLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHI 400
Query: 85 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEANG 142
V + A+D+ + LA G +GE+ T+ QN P + +EA
Sbjct: 401 PVGRVQ-ADDMDELARLADEYG------------SGEIRLTVEQNIIIPNIETSKIEALL 447
Query: 143 LEPLLSNFASDPDVTVR 159
EP+LS F+ DP + ++
Sbjct: 448 KEPVLSTFSPDPPILMK 464
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 35 WFME--AMQSQTVDVIKRMKEITLVMQTPEQVLESQ-------GVTPQDIEDM-LDELQE 84
W ++ ++ +V KRM + L +PE +++ Q GV PQ E L
Sbjct: 341 WLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHI 400
Query: 85 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEANG 142
V + A+D+ + LA G +GE+ T+ QN P + +EA
Sbjct: 401 PVGRVQ-ADDMDELARLADEYG------------SGEIRLTVEQNIIIPNIETSKIEALL 447
Query: 143 LEPLLSNFASDPDVTVR 159
EP+LS F+ DP + ++
Sbjct: 448 KEPVLSTFSPDPPILMK 464
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 35 WFME--AMQSQTVDVIKRMKEITLVMQTPEQVLESQ-------GVTPQDIEDM-LDELQE 84
W ++ ++ +V KRM + L +PE +++ Q GV PQ E L
Sbjct: 341 WLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHI 400
Query: 85 HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEANG 142
V + A+D+ + LA G +GE+ T+ QN P + +EA
Sbjct: 401 PVGRVQ-ADDMDELARLADEYG------------SGEIRLTVEQNIIIPNIETSKIEALL 447
Query: 143 LEPLLSNFASDPDVTVR 159
EP+LS F+ DP + ++
Sbjct: 448 KEPVLSTFSPDPPILMK 464
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 100 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 158
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 159 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 196
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 95 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 153
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 191
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 99 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 157
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 195
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 82 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 140
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 178
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 98 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 156
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 157 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 194
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 101 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 159
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 160 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 197
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 99 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 157
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 195
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 84 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 142
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 143 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 180
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 82 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 140
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 178
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 86 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 144
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 145 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 182
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 97 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE 196
+ ++ G+ L+ S D +V A+ + +L+ H + A RLA G + L
Sbjct: 95 IFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 153
Query: 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234
+VKF + +Q L N ++ G P+ ++++
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,039,566
Number of Sequences: 62578
Number of extensions: 411957
Number of successful extensions: 950
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 49
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)