Query 016280
Match_columns 392
No_of_seqs 282 out of 1173
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 1.6E-51 3.5E-56 400.6 25.5 313 1-320 1-340 (342)
2 KOG0166 Karyopherin (importin) 99.9 3.1E-27 6.7E-32 241.6 18.3 254 71-325 123-390 (514)
3 COG5064 SRP1 Karyopherin (impo 99.9 1.9E-26 4.2E-31 222.7 15.4 253 79-334 136-407 (526)
4 KOG0166 Karyopherin (importin) 99.8 4.9E-18 1.1E-22 174.3 19.3 256 71-328 79-351 (514)
5 PLN03200 cellulose synthase-in 99.8 1.8E-17 3.8E-22 191.3 22.2 250 75-325 380-635 (2102)
6 PLN03200 cellulose synthase-in 99.7 2.3E-16 5E-21 182.2 23.5 176 71-255 417-593 (2102)
7 COG5064 SRP1 Karyopherin (impo 99.6 6.2E-15 1.3E-19 143.3 13.2 188 70-258 255-446 (526)
8 KOG4224 Armadillo repeat prote 99.6 1E-14 2.2E-19 142.8 13.2 241 74-319 183-437 (550)
9 PF08609 Fes1: Nucleotide exch 99.6 1.8E-15 3.8E-20 123.3 6.3 84 5-95 2-92 (92)
10 cd00020 ARM Armadillo/beta-cat 99.5 2.7E-13 5.9E-18 112.5 14.3 118 94-212 2-119 (120)
11 KOG4224 Armadillo repeat prote 99.5 2.7E-12 5.9E-17 126.0 17.7 205 71-277 264-470 (550)
12 cd00020 ARM Armadillo/beta-cat 99.4 2.1E-12 4.5E-17 107.2 13.2 119 136-255 2-120 (120)
13 KOG2160 Armadillo/beta-catenin 99.2 6E-10 1.3E-14 109.8 18.2 180 75-258 61-243 (342)
14 PF10508 Proteasom_PSMB: Prote 99.2 2.6E-09 5.5E-14 112.2 20.5 183 71-257 51-233 (503)
15 KOG4199 Uncharacterized conser 99.1 1.7E-08 3.7E-13 98.7 22.0 221 33-259 168-407 (461)
16 KOG4199 Uncharacterized conser 99.0 1.2E-08 2.6E-13 99.9 17.1 186 70-257 254-446 (461)
17 PF04826 Arm_2: Armadillo-like 99.0 1.2E-08 2.6E-13 98.1 15.0 156 96-258 9-166 (254)
18 PF04826 Arm_2: Armadillo-like 98.9 1.5E-07 3.2E-12 90.6 19.9 181 71-258 26-208 (254)
19 PF05804 KAP: Kinesin-associat 98.9 6.5E-08 1.4E-12 104.6 18.1 177 76-258 267-444 (708)
20 PF10508 Proteasom_PSMB: Prote 98.9 4.9E-07 1.1E-11 95.1 22.9 188 71-261 90-284 (503)
21 PF05804 KAP: Kinesin-associat 98.8 2.2E-07 4.8E-12 100.5 20.0 179 71-258 303-482 (708)
22 KOG1293 Proteins containing ar 98.7 3.3E-07 7.2E-12 96.1 16.3 170 89-259 367-537 (678)
23 PF03224 V-ATPase_H_N: V-ATPas 98.7 9.9E-07 2.1E-11 87.2 18.5 186 71-259 70-273 (312)
24 KOG1517 Guanine nucleotide bin 98.7 3.3E-07 7.1E-12 99.9 15.4 184 74-257 486-673 (1387)
25 PRK09687 putative lyase; Provi 98.6 1E-06 2.2E-11 86.0 15.4 132 100-253 55-186 (280)
26 PF12348 CLASP_N: CLASP N term 98.5 2.8E-06 6.1E-11 79.5 13.0 187 68-261 17-212 (228)
27 KOG1048 Neural adherens juncti 98.4 2.3E-06 4.9E-11 91.6 12.6 165 143-309 235-427 (717)
28 cd00256 VATPase_H VATPase_H, r 98.3 0.00017 3.8E-09 74.1 23.8 183 73-257 69-260 (429)
29 PRK09687 putative lyase; Provi 98.3 1.1E-05 2.4E-10 78.8 14.4 192 101-325 25-218 (280)
30 KOG0168 Putative ubiquitin fus 98.3 1E-05 2.3E-10 87.0 14.8 177 77-258 184-367 (1051)
31 KOG0946 ER-Golgi vesicle-tethe 98.3 4.5E-05 9.9E-10 81.7 18.3 196 62-258 67-299 (970)
32 KOG1048 Neural adherens juncti 98.2 1.4E-05 3E-10 85.7 12.8 173 101-281 235-427 (717)
33 PRK13800 putative oxidoreducta 98.2 0.00017 3.6E-09 81.2 22.0 175 103-325 688-864 (897)
34 KOG0168 Putative ubiquitin fus 98.2 0.00019 4.1E-09 77.7 20.4 187 69-260 223-418 (1051)
35 PRK13800 putative oxidoreducta 98.1 9.7E-05 2.1E-09 83.0 16.6 194 99-325 621-833 (897)
36 PF08045 CDC14: Cell division 98.0 7.5E-05 1.6E-09 71.8 13.0 103 112-214 104-208 (257)
37 PF00514 Arm: Armadillo/beta-c 98.0 1.3E-05 2.8E-10 55.1 5.2 41 130-171 1-41 (41)
38 KOG2171 Karyopherin (importin) 98.0 0.00048 1E-08 76.8 19.8 150 105-258 354-507 (1075)
39 PF13646 HEAT_2: HEAT repeats; 97.9 3E-05 6.5E-10 61.2 6.6 86 101-209 1-88 (88)
40 KOG2122 Beta-catenin-binding p 97.9 6.7E-05 1.5E-09 84.6 10.3 196 87-284 381-589 (2195)
41 PF01602 Adaptin_N: Adaptin N 97.9 0.00067 1.5E-08 70.9 17.6 161 71-253 19-179 (526)
42 PF00514 Arm: Armadillo/beta-c 97.9 1.5E-05 3.3E-10 54.8 3.5 38 90-127 3-40 (41)
43 PF05536 Neurochondrin: Neuroc 97.8 0.0012 2.7E-08 70.2 19.3 193 49-257 5-215 (543)
44 PF13513 HEAT_EZ: HEAT-like re 97.8 2.8E-05 6E-10 56.7 4.8 55 113-169 1-55 (55)
45 KOG2171 Karyopherin (importin) 97.8 0.0022 4.7E-08 71.7 21.2 172 71-248 361-539 (1075)
46 PF13646 HEAT_2: HEAT repeats; 97.8 6.1E-05 1.3E-09 59.4 6.5 87 143-251 1-88 (88)
47 PF09759 Atx10homo_assoc: Spin 97.8 9E-05 1.9E-09 61.6 7.6 67 115-181 2-69 (102)
48 PF01602 Adaptin_N: Adaptin N 97.8 8.3E-05 1.8E-09 77.7 9.4 175 71-258 92-299 (526)
49 KOG1293 Proteins containing ar 97.8 0.0013 2.7E-08 69.8 17.7 137 86-225 408-545 (678)
50 KOG4500 Rho/Rac GTPase guanine 97.8 0.00091 2E-08 68.0 15.7 144 108-253 51-207 (604)
51 KOG4500 Rho/Rac GTPase guanine 97.7 0.001 2.2E-08 67.7 14.5 183 71-257 237-433 (604)
52 cd00256 VATPase_H VATPase_H, r 97.6 0.0015 3.3E-08 67.3 15.7 182 75-257 161-427 (429)
53 PTZ00429 beta-adaptin; Provisi 97.6 0.01 2.2E-07 65.5 22.8 164 73-258 47-211 (746)
54 PF03224 V-ATPase_H_N: V-ATPas 97.6 0.00071 1.5E-08 66.9 12.1 166 77-244 124-303 (312)
55 KOG3678 SARM protein (with ste 97.6 0.00065 1.4E-08 69.6 11.8 159 97-258 178-339 (832)
56 PF05536 Neurochondrin: Neuroc 97.5 0.01 2.2E-07 63.3 19.6 155 101-258 7-171 (543)
57 KOG2122 Beta-catenin-binding p 97.5 0.0008 1.7E-08 76.4 11.6 181 77-258 409-604 (2195)
58 smart00185 ARM Armadillo/beta- 97.4 0.00027 5.7E-09 47.7 4.5 39 90-128 3-41 (41)
59 PF05918 API5: Apoptosis inhib 97.4 0.0027 5.9E-08 67.2 14.2 161 101-282 25-185 (556)
60 KOG2759 Vacuolar H+-ATPase V1 97.4 0.0077 1.7E-07 61.2 16.0 182 75-257 174-440 (442)
61 PTZ00429 beta-adaptin; Provisi 97.3 0.043 9.3E-07 60.6 22.9 145 102-257 143-287 (746)
62 PF11698 V-ATPase_H_C: V-ATPas 97.3 0.00068 1.5E-08 57.8 6.9 102 9-130 15-117 (119)
63 KOG2759 Vacuolar H+-ATPase V1 97.3 0.039 8.5E-07 56.2 20.1 157 99-258 114-274 (442)
64 PF14664 RICTOR_N: Rapamycin-i 97.3 0.0088 1.9E-07 60.8 15.7 182 71-258 81-272 (371)
65 KOG1517 Guanine nucleotide bin 97.3 0.0025 5.4E-08 70.6 12.2 170 89-258 544-735 (1387)
66 COG5369 Uncharacterized conser 97.3 0.00097 2.1E-08 69.3 8.5 138 119-257 409-547 (743)
67 KOG0946 ER-Golgi vesicle-tethe 97.2 0.01 2.3E-07 64.2 15.9 185 70-258 35-244 (970)
68 KOG4646 Uncharacterized conser 97.2 0.0037 8.1E-08 54.7 10.3 128 102-232 19-147 (173)
69 KOG0213 Splicing factor 3b, su 97.2 0.0063 1.4E-07 65.5 13.9 150 104-257 804-956 (1172)
70 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00071 1.5E-08 49.1 4.6 55 156-211 1-55 (55)
71 KOG1241 Karyopherin (importin) 97.1 0.02 4.4E-07 61.9 17.1 173 106-281 371-556 (859)
72 PF09759 Atx10homo_assoc: Spin 97.1 0.0016 3.4E-08 54.2 7.0 68 158-225 2-71 (102)
73 PF11841 DUF3361: Domain of un 97.1 0.0095 2.1E-07 53.4 11.6 127 91-218 3-136 (160)
74 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0016 3.4E-08 55.6 6.3 73 142-214 44-116 (119)
75 PF10165 Ric8: Guanine nucleot 97.0 0.022 4.7E-07 59.3 16.0 249 79-336 2-308 (446)
76 PF05004 IFRD: Interferon-rela 97.0 0.2 4.3E-06 49.8 21.4 181 72-255 57-257 (309)
77 TIGR02270 conserved hypothetic 96.9 0.011 2.5E-07 60.8 12.1 118 101-253 88-205 (410)
78 KOG4413 26S proteasome regulat 96.9 0.03 6.5E-07 55.6 14.3 152 101-254 84-242 (524)
79 PF08045 CDC14: Cell division 96.8 0.026 5.6E-07 54.5 13.4 103 156-258 105-210 (257)
80 smart00185 ARM Armadillo/beta- 96.8 0.003 6.5E-08 42.4 4.9 37 176-212 4-40 (41)
81 COG5096 Vesicle coat complex, 96.7 0.044 9.6E-07 60.0 15.7 140 101-256 57-196 (757)
82 KOG4646 Uncharacterized conser 96.6 0.024 5.2E-07 49.7 10.1 116 141-258 16-131 (173)
83 COG1413 FOG: HEAT repeat [Ener 96.6 0.023 4.9E-07 56.2 11.4 67 183-258 179-245 (335)
84 KOG1789 Endocytosis protein RM 96.6 0.032 7E-07 62.3 13.2 140 71-214 1738-1884(2235)
85 KOG1991 Nuclear transport rece 96.5 0.041 9E-07 61.0 13.8 108 71-180 431-541 (1010)
86 KOG1222 Kinesin associated pro 96.5 0.02 4.4E-07 59.2 10.4 122 88-214 334-456 (791)
87 PF06371 Drf_GBD: Diaphanous G 96.4 0.065 1.4E-06 48.3 12.6 109 143-254 68-186 (187)
88 COG5181 HSH155 U2 snRNP splice 96.4 0.015 3.4E-07 61.6 9.3 152 102-257 607-761 (975)
89 TIGR02270 conserved hypothetic 96.4 0.16 3.6E-06 52.3 16.7 159 101-287 119-298 (410)
90 COG5369 Uncharacterized conser 96.4 0.02 4.4E-07 59.8 9.9 183 74-257 405-596 (743)
91 PF12348 CLASP_N: CLASP N term 96.4 0.22 4.7E-06 46.4 16.1 143 109-258 17-163 (228)
92 KOG2023 Nuclear transport rece 96.3 0.075 1.6E-06 57.0 13.9 153 75-234 145-307 (885)
93 KOG1824 TATA-binding protein-i 96.3 0.13 2.9E-06 57.0 16.1 165 102-275 860-1056(1233)
94 PF12717 Cnd1: non-SMC mitotic 96.2 0.077 1.7E-06 48.1 12.0 92 155-256 1-93 (178)
95 PF12460 MMS19_C: RNAPII trans 96.2 0.06 1.3E-06 55.4 12.3 112 102-217 274-398 (415)
96 KOG1058 Vesicle coat complex C 96.2 0.87 1.9E-05 49.8 20.8 152 101-258 136-349 (948)
97 COG1413 FOG: HEAT repeat [Ener 96.0 0.21 4.6E-06 49.3 15.1 136 99-257 43-211 (335)
98 PF11841 DUF3361: Domain of un 96.0 0.46 1E-05 42.7 15.2 125 135-260 5-136 (160)
99 PF02985 HEAT: HEAT repeat; I 95.9 0.015 3.2E-07 37.4 4.0 29 101-129 2-30 (31)
100 PF12717 Cnd1: non-SMC mitotic 95.8 0.53 1.1E-05 42.6 15.3 93 112-214 1-93 (178)
101 PF14664 RICTOR_N: Rapamycin-i 95.8 0.38 8.2E-06 49.0 15.8 149 104-258 30-179 (371)
102 KOG2734 Uncharacterized conser 95.8 1.2 2.5E-05 46.2 18.8 181 76-258 200-403 (536)
103 KOG2023 Nuclear transport rece 95.7 0.18 4E-06 54.1 13.4 153 101-258 130-288 (885)
104 KOG1222 Kinesin associated pro 95.7 0.39 8.5E-06 50.0 15.3 167 83-256 451-622 (791)
105 KOG3036 Protein involved in ce 95.7 1.2 2.5E-05 43.0 17.3 187 71-257 37-249 (293)
106 KOG1059 Vesicle coat complex A 95.7 0.33 7.2E-06 52.6 15.1 88 77-176 128-215 (877)
107 KOG1061 Vesicle coat complex A 95.6 0.083 1.8E-06 57.3 10.4 144 99-258 49-192 (734)
108 KOG2259 Uncharacterized conser 95.5 0.14 2.9E-06 55.0 11.6 180 73-258 194-442 (823)
109 KOG3678 SARM protein (with ste 95.5 0.13 2.8E-06 53.3 11.0 150 75-228 199-350 (832)
110 KOG1062 Vesicle coat complex A 95.5 0.61 1.3E-05 51.1 16.4 176 77-258 126-382 (866)
111 KOG1248 Uncharacterized conser 95.4 1.5 3.4E-05 49.9 19.7 217 30-259 672-902 (1176)
112 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.13 2.8E-06 42.4 8.8 93 158-254 2-95 (97)
113 KOG2734 Uncharacterized conser 95.2 3.9 8.5E-05 42.4 20.3 188 75-264 101-354 (536)
114 KOG1824 TATA-binding protein-i 95.0 0.33 7.2E-06 54.1 12.9 108 101-218 934-1041(1233)
115 KOG1242 Protein containing ada 95.0 0.58 1.3E-05 49.8 14.3 169 74-257 270-446 (569)
116 KOG1077 Vesicle coat complex A 95.0 0.7 1.5E-05 50.1 14.8 79 92-171 179-270 (938)
117 KOG1241 Karyopherin (importin) 94.9 0.14 3.1E-06 55.6 9.7 153 99-258 319-480 (859)
118 PF13251 DUF4042: Domain of un 94.9 0.16 3.4E-06 46.7 8.6 141 115-258 2-177 (182)
119 PF04078 Rcd1: Cell differenti 94.8 1.8 3.9E-05 41.9 15.9 188 70-258 7-221 (262)
120 PF12755 Vac14_Fab1_bd: Vacuol 94.8 0.28 6.1E-06 40.4 9.2 93 116-212 3-95 (97)
121 COG5181 HSH155 U2 snRNP splice 94.7 0.23 5E-06 53.0 10.4 213 99-323 688-942 (975)
122 KOG1248 Uncharacterized conser 94.7 10 0.00023 43.5 24.0 184 70-259 666-860 (1176)
123 cd03569 VHS_Hrs_Vps27p VHS dom 94.7 0.071 1.5E-06 46.9 5.7 74 100-173 42-116 (142)
124 PF11707 Npa1: Ribosome 60S bi 94.6 1.3 2.9E-05 44.2 15.4 168 92-260 50-242 (330)
125 KOG4413 26S proteasome regulat 94.5 3 6.4E-05 41.9 16.9 266 75-345 99-399 (524)
126 KOG4535 HEAT and armadillo rep 94.5 0.24 5.2E-06 51.6 9.7 152 101-257 435-605 (728)
127 PF06371 Drf_GBD: Diaphanous G 94.4 0.4 8.7E-06 43.1 10.2 110 100-212 67-186 (187)
128 PF08167 RIX1: rRNA processing 94.4 0.58 1.2E-05 42.1 11.1 114 101-218 27-148 (165)
129 PF10165 Ric8: Guanine nucleot 94.3 0.59 1.3E-05 48.8 12.5 125 133-260 14-173 (446)
130 COG5096 Vesicle coat complex, 94.2 1.4 3.1E-05 48.6 15.6 126 75-214 71-196 (757)
131 KOG2025 Chromosome condensatio 94.1 0.48 1E-05 51.4 11.4 129 70-207 57-187 (892)
132 KOG1566 Conserved protein Mo25 94.1 6.9 0.00015 38.9 19.0 139 157-300 181-328 (342)
133 PF02985 HEAT: HEAT repeat; I 93.9 0.093 2E-06 33.7 3.6 30 227-256 1-30 (31)
134 KOG1058 Vesicle coat complex C 93.9 1.8 3.9E-05 47.4 15.1 130 74-214 200-347 (948)
135 PF06025 DUF913: Domain of Unk 93.8 1.5 3.1E-05 44.9 13.9 104 93-197 99-209 (379)
136 PF12460 MMS19_C: RNAPII trans 93.8 6.8 0.00015 40.3 19.0 128 124-262 260-401 (415)
137 PF12031 DUF3518: Domain of un 93.8 0.38 8.3E-06 46.0 8.9 53 101-153 174-228 (257)
138 PF12719 Cnd3: Nuclear condens 93.8 0.69 1.5E-05 45.4 11.2 113 99-217 26-147 (298)
139 KOG2259 Uncharacterized conser 93.8 0.47 1E-05 51.1 10.4 104 137-252 369-472 (823)
140 KOG0414 Chromosome condensatio 93.7 2.7 5.9E-05 48.1 16.7 146 98-258 917-1067(1251)
141 PF08569 Mo25: Mo25-like; Int 93.7 3.3 7.3E-05 41.6 16.1 182 112-301 136-326 (335)
142 KOG2274 Predicted importin 9 [ 93.7 2.5 5.3E-05 47.2 15.9 156 28-187 542-705 (1005)
143 KOG1059 Vesicle coat complex A 93.6 1.6 3.5E-05 47.5 14.0 143 100-260 182-333 (877)
144 PF11701 UNC45-central: Myosin 93.5 0.33 7.2E-06 43.3 7.7 146 100-252 4-156 (157)
145 KOG1789 Endocytosis protein RM 93.4 0.84 1.8E-05 51.7 11.9 141 115-258 1741-1886(2235)
146 KOG2999 Regulator of Rac1, req 93.3 1.7 3.6E-05 46.2 13.4 159 50-218 84-247 (713)
147 KOG1020 Sister chromatid cohes 93.3 2.2 4.8E-05 50.0 15.3 134 115-260 793-926 (1692)
148 cd03568 VHS_STAM VHS domain fa 93.2 0.31 6.8E-06 43.0 6.9 74 101-174 39-113 (144)
149 PF04869 Uso1_p115_head: Uso1 93.0 2.1 4.6E-05 42.6 13.2 159 143-310 36-231 (312)
150 KOG2137 Protein kinase [Signal 92.9 1.4 3.1E-05 47.9 12.6 139 96-242 386-524 (700)
151 KOG1820 Microtubule-associated 92.8 2.9 6.3E-05 46.8 15.2 171 72-258 267-446 (815)
152 cd03567 VHS_GGA VHS domain fam 92.7 0.3 6.5E-06 42.9 6.1 74 100-173 39-118 (139)
153 KOG2956 CLIP-associating prote 92.7 11 0.00024 39.5 17.9 176 71-257 300-479 (516)
154 KOG2999 Regulator of Rac1, req 92.6 9 0.00019 40.9 17.5 157 102-260 86-247 (713)
155 PF08569 Mo25: Mo25-like; Int 92.3 2.9 6.3E-05 42.1 13.3 164 91-258 68-241 (335)
156 KOG0212 Uncharacterized conser 92.2 5.6 0.00012 42.4 15.5 175 82-259 232-410 (675)
157 KOG2611 Neurochondrin/leucine- 92.2 9 0.00019 40.3 16.6 197 104-315 16-231 (698)
158 PF04869 Uso1_p115_head: Uso1 92.2 10 0.00022 37.8 16.8 157 99-255 34-231 (312)
159 cd03561 VHS VHS domain family; 92.1 0.89 1.9E-05 39.3 8.3 74 101-174 39-115 (133)
160 cd03561 VHS VHS domain family; 91.9 1.7 3.7E-05 37.5 9.9 95 159-258 17-115 (133)
161 KOG4653 Uncharacterized conser 91.9 13 0.00028 41.7 18.2 173 76-259 745-922 (982)
162 KOG1991 Nuclear transport rece 91.9 6.2 0.00013 44.5 16.1 132 117-259 390-536 (1010)
163 KOG0213 Splicing factor 3b, su 91.9 1.3 2.9E-05 48.5 10.6 168 148-318 806-979 (1172)
164 KOG0212 Uncharacterized conser 91.7 4 8.7E-05 43.5 13.7 141 74-217 266-410 (675)
165 KOG1020 Sister chromatid cohes 91.6 13 0.00027 44.1 18.5 108 101-218 818-926 (1692)
166 COG5215 KAP95 Karyopherin (imp 91.5 9 0.00019 41.2 16.0 176 100-280 363-554 (858)
167 KOG1242 Protein containing ada 91.2 4.3 9.3E-05 43.4 13.6 173 101-280 136-308 (569)
168 KOG1062 Vesicle coat complex A 91.1 2.5 5.4E-05 46.6 11.9 140 112-258 247-417 (866)
169 COG5209 RCD1 Uncharacterized p 91.1 3.5 7.5E-05 39.4 11.4 182 75-256 62-269 (315)
170 COG5215 KAP95 Karyopherin (imp 91.1 4.1 8.8E-05 43.6 13.0 188 71-264 234-446 (858)
171 COG5240 SEC21 Vesicle coat com 91.0 2.8 6.2E-05 44.8 11.9 55 155-212 500-554 (898)
172 PF06025 DUF913: Domain of Unk 91.0 14 0.0003 37.9 16.8 162 77-239 3-209 (379)
173 PF14668 RICTOR_V: Rapamycin-i 91.0 0.86 1.9E-05 35.6 6.2 57 116-173 4-60 (73)
174 smart00288 VHS Domain present 90.9 3.2 7E-05 35.9 10.5 73 101-173 39-113 (133)
175 cd03569 VHS_Hrs_Vps27p VHS dom 90.9 2.6 5.7E-05 37.0 10.0 108 145-257 7-116 (142)
176 KOG2973 Uncharacterized conser 90.8 6.2 0.00013 39.3 13.2 149 102-257 6-163 (353)
177 KOG2025 Chromosome condensatio 90.1 19 0.0004 39.7 17.1 88 74-168 101-190 (892)
178 smart00638 LPD_N Lipoprotein N 89.6 13 0.00028 39.8 16.0 131 101-251 395-541 (574)
179 KOG1832 HIV-1 Vpr-binding prot 89.5 1.7 3.8E-05 48.4 9.1 172 74-258 568-776 (1516)
180 KOG3036 Protein involved in ce 89.4 22 0.00047 34.5 16.2 136 76-213 97-247 (293)
181 PF11865 DUF3385: Domain of un 89.4 3.7 7.9E-05 36.8 9.9 142 101-254 12-156 (160)
182 KOG1061 Vesicle coat complex A 89.2 1.8 3.9E-05 47.3 9.0 70 101-174 123-192 (734)
183 COG5231 VMA13 Vacuolar H+-ATPa 89.0 4 8.6E-05 40.8 10.4 72 184-255 356-428 (432)
184 cd03568 VHS_STAM VHS domain fa 89.0 6 0.00013 34.9 10.8 94 160-258 18-113 (144)
185 COG5098 Chromosome condensatio 89.0 2.3 4.9E-05 46.4 9.3 115 101-218 301-420 (1128)
186 KOG1060 Vesicle coat complex A 88.8 8.9 0.00019 42.5 13.7 161 74-257 51-211 (968)
187 PF00790 VHS: VHS domain; Int 88.8 2.8 6.1E-05 36.5 8.5 73 101-173 44-120 (140)
188 PF12719 Cnd3: Nuclear condens 88.8 3.3 7.1E-05 40.6 10.0 111 141-257 26-145 (298)
189 PF08167 RIX1: rRNA processing 88.7 8.6 0.00019 34.4 11.8 112 143-259 27-147 (165)
190 PF04078 Rcd1: Cell differenti 88.7 9.1 0.0002 37.2 12.5 145 74-220 66-224 (262)
191 PF14668 RICTOR_V: Rapamycin-i 88.6 1.6 3.4E-05 34.2 6.0 67 159-227 4-71 (73)
192 PF01347 Vitellogenin_N: Lipop 88.6 5.3 0.00011 43.0 12.3 182 32-251 380-585 (618)
193 KOG1077 Vesicle coat complex A 88.6 8.7 0.00019 42.1 13.3 160 101-276 76-237 (938)
194 PF14225 MOR2-PAG1_C: Cell mor 88.3 9.4 0.0002 37.1 12.5 166 75-257 79-256 (262)
195 PF05004 IFRD: Interferon-rela 88.0 30 0.00064 34.3 22.4 138 73-213 101-257 (309)
196 PF11701 UNC45-central: Myosin 88.0 1.2 2.6E-05 39.7 5.8 101 107-209 51-155 (157)
197 KOG0915 Uncharacterized conser 87.8 15 0.00033 43.4 15.5 156 101-259 1000-1164(1702)
198 smart00288 VHS Domain present 87.8 4.5 9.6E-05 35.0 9.1 93 160-257 18-113 (133)
199 KOG2274 Predicted importin 9 [ 87.5 29 0.00064 39.1 16.8 139 77-218 549-694 (1005)
200 PF00790 VHS: VHS domain; Int 87.5 5.3 0.00011 34.7 9.4 109 144-257 7-120 (140)
201 KOG1943 Beta-tubulin folding c 87.3 8.2 0.00018 44.0 12.7 147 99-256 341-501 (1133)
202 KOG2153 Protein involved in th 87.2 13 0.00028 40.3 13.5 177 71-258 204-395 (704)
203 KOG2611 Neurochondrin/leucine- 87.2 42 0.00091 35.6 16.8 146 73-221 26-193 (698)
204 cd03567 VHS_GGA VHS domain fam 87.1 6.2 0.00013 34.6 9.6 95 159-258 18-119 (139)
205 PF13764 E3_UbLigase_R4: E3 ub 86.8 7.3 0.00016 43.6 12.1 131 91-222 109-267 (802)
206 PF05918 API5: Apoptosis inhib 86.5 17 0.00036 39.1 14.2 104 144-259 26-129 (556)
207 KOG1060 Vesicle coat complex A 86.4 8.5 0.00018 42.6 11.8 58 107-173 295-352 (968)
208 KOG1967 DNA repair/transcripti 86.1 4.6 0.0001 45.3 9.8 146 100-249 868-1018(1030)
209 KOG4535 HEAT and armadillo rep 85.6 0.28 6E-06 51.1 0.3 60 111-170 542-602 (728)
210 PF08324 PUL: PUL domain; Int 85.5 23 0.0005 33.8 13.6 194 23-229 31-247 (268)
211 PF14500 MMS19_N: Dos2-interac 85.4 11 0.00024 36.5 11.3 141 104-255 4-153 (262)
212 COG5116 RPN2 26S proteasome re 85.3 10 0.00022 40.7 11.5 130 106-258 523-653 (926)
213 PF10363 DUF2435: Protein of u 85.2 3.7 8E-05 33.4 6.7 71 187-259 6-76 (92)
214 KOG2973 Uncharacterized conser 85.0 4.8 0.0001 40.0 8.5 106 145-258 7-114 (353)
215 KOG2062 26S proteasome regulat 85.0 3.9 8.5E-05 44.9 8.5 64 98-171 517-584 (929)
216 KOG2933 Uncharacterized conser 85.0 7.1 0.00015 38.8 9.7 99 101-212 131-233 (334)
217 COG5116 RPN2 26S proteasome re 84.9 4 8.6E-05 43.7 8.3 101 99-215 551-652 (926)
218 KOG0301 Phospholipase A2-activ 84.8 17 0.00036 39.7 12.9 183 45-236 520-726 (745)
219 KOG2032 Uncharacterized conser 84.8 27 0.00058 36.9 14.1 120 92-213 247-371 (533)
220 KOG1240 Protein kinase contain 84.7 9.1 0.0002 44.2 11.5 133 76-212 378-536 (1431)
221 cd03565 VHS_Tom1 VHS domain fa 84.6 4.7 0.0001 35.3 7.6 73 101-173 40-117 (141)
222 PF04063 DUF383: Domain of unk 84.0 7.7 0.00017 35.9 9.1 127 108-236 4-157 (192)
223 cd00197 VHS_ENTH_ANTH VHS, ENT 83.6 19 0.00041 29.9 10.7 69 101-169 39-113 (115)
224 KOG2062 26S proteasome regulat 83.6 16 0.00035 40.3 12.3 87 110-212 566-652 (929)
225 COG5098 Chromosome condensatio 83.5 7.7 0.00017 42.5 9.8 145 98-258 890-1040(1128)
226 KOG4151 Myosin assembly protei 83.3 8.1 0.00017 42.6 10.2 156 93-251 578-737 (748)
227 KOG4151 Myosin assembly protei 83.2 4.3 9.4E-05 44.6 8.1 139 118-257 561-701 (748)
228 PF13251 DUF4042: Domain of un 83.2 19 0.00042 33.0 11.3 117 100-216 40-177 (182)
229 KOG2032 Uncharacterized conser 82.6 19 0.00041 38.0 12.0 113 139-255 252-371 (533)
230 KOG1967 DNA repair/transcripti 82.6 3.6 7.7E-05 46.1 7.2 105 101-207 911-1018(1030)
231 KOG1820 Microtubule-associated 82.5 93 0.002 35.2 20.1 146 104-259 258-404 (815)
232 KOG1243 Protein kinase [Genera 82.5 23 0.00049 38.8 13.0 138 108-257 263-400 (690)
233 PF12397 U3snoRNP10: U3 small 82.4 6.7 0.00014 33.0 7.5 67 101-173 8-76 (121)
234 KOG0414 Chromosome condensatio 82.0 7.4 0.00016 44.7 9.5 116 101-219 314-434 (1251)
235 KOG1243 Protein kinase [Genera 81.3 12 0.00026 40.9 10.4 170 71-256 267-438 (690)
236 COG5240 SEC21 Vesicle coat com 81.2 6.4 0.00014 42.2 8.2 94 71-170 444-554 (898)
237 PF08506 Cse1: Cse1; InterPro 80.8 25 0.00055 35.8 12.3 131 113-250 225-370 (370)
238 KOG1087 Cytosolic sorting prot 80.7 6.8 0.00015 41.2 8.2 68 101-168 40-109 (470)
239 COG5218 YCG1 Chromosome conden 80.6 21 0.00045 38.6 11.6 127 71-205 63-191 (885)
240 PF01365 RYDR_ITPR: RIH domain 80.0 6.2 0.00013 36.4 7.0 116 93-214 37-170 (207)
241 COG5231 VMA13 Vacuolar H+-ATPa 79.7 2.6 5.7E-05 42.1 4.5 124 90-213 270-428 (432)
242 cd00197 VHS_ENTH_ANTH VHS, ENT 79.3 20 0.00043 29.8 9.3 91 159-254 17-114 (115)
243 KOG1240 Protein kinase contain 78.4 26 0.00055 40.8 12.1 96 72-170 437-536 (1431)
244 PF12830 Nipped-B_C: Sister ch 78.3 48 0.001 30.2 12.2 109 142-257 9-124 (187)
245 KOG1822 Uncharacterized conser 77.8 10 0.00022 45.6 9.2 112 100-214 877-989 (2067)
246 PF12830 Nipped-B_C: Sister ch 77.1 58 0.0013 29.6 16.2 66 101-175 10-78 (187)
247 KOG3665 ZYG-1-like serine/thre 77.0 75 0.0016 35.3 15.3 94 165-259 494-591 (699)
248 KOG2676 Uncharacterized conser 75.1 3.8 8.2E-05 41.5 4.2 64 118-181 375-439 (478)
249 KOG1943 Beta-tubulin folding c 75.0 34 0.00073 39.3 11.9 139 110-255 555-705 (1133)
250 PF10363 DUF2435: Protein of u 74.5 7.6 0.00016 31.6 5.2 71 101-175 5-76 (92)
251 COG5656 SXM1 Importin, protein 74.4 92 0.002 34.8 14.5 115 74-194 432-549 (970)
252 KOG1993 Nuclear transport rece 74.2 63 0.0014 36.2 13.3 162 85-255 475-644 (978)
253 PF14726 RTTN_N: Rotatin, an a 73.2 29 0.00063 28.6 8.4 93 114-208 2-95 (98)
254 PF10521 DUF2454: Protein of u 72.0 43 0.00094 32.6 10.8 71 101-171 121-203 (282)
255 PF10521 DUF2454: Protein of u 71.4 44 0.00096 32.5 10.8 114 142-256 120-254 (282)
256 KOG1078 Vesicle coat complex C 71.3 26 0.00057 38.9 9.7 94 71-170 423-531 (865)
257 KOG1086 Cytosolic sorting prot 71.1 1.1E+02 0.0024 32.0 13.5 57 108-164 54-116 (594)
258 KOG0413 Uncharacterized conser 71.0 16 0.00035 41.6 8.1 125 113-254 945-1072(1529)
259 PF13001 Ecm29: Proteasome sta 70.5 18 0.00039 38.3 8.4 82 93-178 364-450 (501)
260 KOG3665 ZYG-1-like serine/thre 70.2 30 0.00064 38.4 10.2 163 87-250 501-692 (699)
261 KOG0211 Protein phosphatase 2A 70.1 62 0.0013 36.3 12.5 137 107-253 526-662 (759)
262 KOG4653 Uncharacterized conser 69.3 46 0.001 37.5 11.1 73 106-180 854-927 (982)
263 PF06012 DUF908: Domain of Unk 68.2 23 0.0005 35.4 8.1 63 114-177 237-303 (329)
264 KOG2038 CAATT-binding transcri 66.4 75 0.0016 35.5 11.8 70 143-218 306-375 (988)
265 PF14726 RTTN_N: Rotatin, an a 66.3 53 0.0011 27.1 8.5 93 157-250 2-95 (98)
266 PF12074 DUF3554: Domain of un 64.7 67 0.0014 31.9 10.7 176 71-260 36-240 (339)
267 cd03565 VHS_Tom1 VHS domain fa 64.7 97 0.0021 27.0 10.7 94 159-257 18-117 (141)
268 PF08324 PUL: PUL domain; Int 64.6 33 0.00072 32.7 8.3 175 81-258 43-234 (268)
269 cd03572 ENTH_epsin_related ENT 63.9 55 0.0012 28.1 8.5 88 161-253 20-117 (122)
270 PF09758 FPL: Uncharacterised 63.6 32 0.00069 30.7 7.1 128 127-254 12-148 (149)
271 PF12530 DUF3730: Protein of u 63.5 1.3E+02 0.0029 28.3 18.3 129 70-214 13-152 (234)
272 KOG2956 CLIP-associating prote 62.5 2.1E+02 0.0046 30.3 14.5 192 143-346 288-492 (516)
273 KOG0413 Uncharacterized conser 62.4 30 0.00065 39.5 8.1 110 142-256 577-686 (1529)
274 PF08623 TIP120: TATA-binding 62.2 1.1E+02 0.0025 27.7 10.7 81 198-282 41-121 (169)
275 PF01365 RYDR_ITPR: RIH domain 62.0 12 0.00025 34.6 4.4 123 131-258 33-172 (207)
276 COG5209 RCD1 Uncharacterized p 61.4 68 0.0015 30.9 9.2 96 76-172 118-219 (315)
277 KOG1949 Uncharacterized conser 60.9 2.5E+02 0.0053 31.5 14.3 108 99-212 220-330 (1005)
278 KOG1832 HIV-1 Vpr-binding prot 60.1 1.4E+02 0.003 34.2 12.5 144 77-236 331-490 (1516)
279 TIGR00207 fliG flagellar motor 60.1 1.9E+02 0.0042 29.0 22.1 45 270-325 285-330 (338)
280 KOG2038 CAATT-binding transcri 59.8 1.4E+02 0.003 33.5 12.3 141 104-258 201-373 (988)
281 PF08216 CTNNBL: Catenin-beta- 59.5 12 0.00027 31.4 3.6 44 74-117 62-105 (108)
282 PF11791 Aconitase_B_N: Aconit 58.7 14 0.00031 32.9 4.1 104 49-174 22-126 (154)
283 cd03572 ENTH_epsin_related ENT 58.1 82 0.0018 27.0 8.6 86 123-214 25-120 (122)
284 KOG0211 Protein phosphatase 2A 57.9 69 0.0015 35.9 10.0 139 109-257 169-307 (759)
285 COG5656 SXM1 Importin, protein 57.7 2.1E+02 0.0046 32.1 13.3 146 98-249 407-565 (970)
286 KOG2199 Signal transducing ada 57.2 1.7E+02 0.0036 30.4 11.7 111 142-257 8-120 (462)
287 COG4913 Uncharacterized protei 57.1 3.3E+02 0.007 30.7 18.3 247 73-347 650-920 (1104)
288 PF12463 DUF3689: Protein of u 57.0 1.5E+02 0.0034 29.4 11.4 127 133-259 1-177 (303)
289 PF13764 E3_UbLigase_R4: E3 ub 57.0 3.4E+02 0.0073 30.8 19.1 181 73-257 186-408 (802)
290 KOG2073 SAP family cell cycle 57.0 90 0.0019 35.4 10.8 62 132-193 181-248 (838)
291 KOG1078 Vesicle coat complex C 56.6 1.2E+02 0.0026 34.0 11.3 74 186-264 247-320 (865)
292 PRK05686 fliG flagellar motor 56.4 2.2E+02 0.0048 28.5 20.8 48 270-327 288-335 (339)
293 KOG2676 Uncharacterized conser 56.3 11 0.00024 38.2 3.3 64 162-225 376-441 (478)
294 PF10274 ParcG: Parkin co-regu 56.2 1.4E+02 0.003 27.5 10.2 73 184-258 38-112 (183)
295 KOG2137 Protein kinase [Signal 55.8 1.9E+02 0.0041 32.1 12.6 173 72-257 287-460 (700)
296 PF09324 DUF1981: Domain of un 55.3 20 0.00044 28.6 4.1 60 141-205 17-80 (86)
297 KOG0915 Uncharacterized conser 55.1 85 0.0018 37.6 10.3 132 115-254 973-1112(1702)
298 PF07814 WAPL: Wings apart-lik 54.5 1.1E+02 0.0024 31.0 10.3 83 111-194 34-116 (361)
299 PF04388 Hamartin: Hamartin pr 53.6 3.2E+02 0.0068 30.3 14.3 62 197-258 81-143 (668)
300 PF01603 B56: Protein phosphat 52.7 2.2E+02 0.0047 29.4 12.3 99 76-175 108-208 (409)
301 cd08050 TAF6 TATA Binding Prot 52.2 2.6E+02 0.0057 28.1 13.2 139 26-169 170-338 (343)
302 PLN03205 ATR interacting prote 51.5 1.4E+02 0.003 31.1 10.1 125 110-235 383-544 (652)
303 PF01347 Vitellogenin_N: Lipop 50.5 70 0.0015 34.4 8.6 96 154-260 447-558 (618)
304 PF04388 Hamartin: Hamartin pr 50.0 39 0.00084 37.3 6.6 69 112-180 81-149 (668)
305 PF12530 DUF3730: Protein of u 49.7 2.3E+02 0.005 26.7 16.6 194 101-313 2-217 (234)
306 COG5218 YCG1 Chromosome conden 49.3 4E+02 0.0086 29.3 15.6 116 182-334 89-205 (885)
307 cd03562 CID CID (CTD-Interacti 49.2 1E+02 0.0022 25.3 7.7 89 110-209 16-104 (114)
308 PF14500 MMS19_N: Dos2-interac 49.1 1.3E+02 0.0029 29.0 9.5 67 188-257 3-71 (262)
309 KOG2199 Signal transducing ada 48.7 87 0.0019 32.3 8.2 86 72-162 23-109 (462)
310 KOG1525 Sister chromatid cohes 48.3 33 0.0007 40.5 5.9 147 98-256 258-406 (1266)
311 KOG2933 Uncharacterized conser 47.5 1.6E+02 0.0035 29.5 9.7 110 143-259 90-203 (334)
312 PRK07194 fliG flagellar motor 46.5 3.2E+02 0.0069 27.4 19.3 20 24-43 28-47 (334)
313 PF06685 DUF1186: Protein of u 45.8 2.9E+02 0.0062 26.7 14.2 90 112-224 55-153 (249)
314 KOG4524 Uncharacterized conser 45.5 1.1E+02 0.0023 35.1 9.0 96 184-280 803-902 (1014)
315 smart00638 LPD_N Lipoprotein N 45.4 2.3E+02 0.0049 30.3 11.5 77 154-248 492-571 (574)
316 KOG0567 HEAT repeat-containing 45.4 1.2E+02 0.0026 29.8 8.3 97 97-215 182-282 (289)
317 PF13001 Ecm29: Proteasome sta 44.5 1.3E+02 0.0028 31.9 9.3 107 106-215 326-445 (501)
318 PRK14707 hypothetical protein; 43.6 3.1E+02 0.0066 34.6 12.6 140 98-239 372-513 (2710)
319 PF14663 RasGEF_N_2: Rapamycin 43.2 57 0.0012 27.4 5.2 40 100-140 9-48 (115)
320 KOG1087 Cytosolic sorting prot 43.2 76 0.0016 33.5 7.2 70 184-253 38-110 (470)
321 PF07814 WAPL: Wings apart-lik 43.1 1.5E+02 0.0033 30.0 9.2 93 143-236 23-116 (361)
322 PF04063 DUF383: Domain of unk 42.1 1.2E+02 0.0026 28.0 7.6 59 114-174 73-135 (192)
323 PLN03205 ATR interacting prote 42.0 2.2E+02 0.0047 29.8 9.9 157 101-259 325-520 (652)
324 PF08389 Xpo1: Exportin 1-like 41.0 71 0.0015 26.8 5.7 87 26-123 62-148 (148)
325 PF06012 DUF908: Domain of Unk 40.9 1.1E+02 0.0025 30.4 7.9 71 163-233 240-323 (329)
326 PRK14707 hypothetical protein; 39.4 3.5E+02 0.0076 34.1 12.2 170 77-249 310-481 (2710)
327 KOG4464 Signaling protein RIC- 38.2 5E+02 0.011 27.3 12.5 83 111-195 109-198 (532)
328 PF11864 DUF3384: Domain of un 38.0 4.9E+02 0.011 27.2 19.2 173 72-258 4-209 (464)
329 PLN03076 ARF guanine nucleotid 37.5 2.9E+02 0.0062 34.3 11.5 105 99-213 1133-1253(1780)
330 PF08767 CRM1_C: CRM1 C termin 37.1 4.3E+02 0.0093 26.2 11.6 138 114-257 42-196 (319)
331 PF01603 B56: Protein phosphat 36.7 3.6E+02 0.0079 27.7 11.0 170 70-248 145-319 (409)
332 PF03378 CAS_CSE1: CAS/CSE pro 36.4 3.9E+02 0.0085 27.9 11.2 145 112-257 43-214 (435)
333 PF10274 ParcG: Parkin co-regu 35.9 3.5E+02 0.0076 24.9 10.5 76 101-179 40-117 (183)
334 PF04821 TIMELESS: Timeless pr 34.9 2.3E+02 0.0051 27.3 8.8 148 92-259 33-212 (266)
335 PF08216 CTNNBL: Catenin-beta- 34.7 33 0.00072 28.9 2.4 38 206-244 68-105 (108)
336 COG1536 FliG Flagellar motor s 34.5 5E+02 0.011 26.2 21.1 16 182-197 200-215 (339)
337 PF04499 SAPS: SIT4 phosphatas 34.3 2.4E+02 0.0053 29.8 9.4 43 131-173 52-94 (475)
338 KOG1788 Uncharacterized conser 33.5 1.1E+02 0.0024 35.7 6.7 78 176-253 900-980 (2799)
339 KOG2549 Transcription initiati 33.1 6.6E+02 0.014 27.2 14.5 113 143-257 241-372 (576)
340 KOG4464 Signaling protein RIC- 32.1 4.7E+02 0.01 27.5 10.5 105 154-260 109-236 (532)
341 KOG2374 Uncharacterized conser 31.6 6.8E+02 0.015 26.9 11.8 66 101-168 46-122 (661)
342 PF08506 Cse1: Cse1; InterPro 30.8 4.7E+02 0.01 26.6 10.6 91 70-166 267-370 (370)
343 PF06685 DUF1186: Protein of u 29.7 2.2E+02 0.0049 27.4 7.5 56 92-149 102-161 (249)
344 PF11894 DUF3414: Protein of u 29.4 1.6E+02 0.0034 36.3 7.8 56 115-170 580-638 (1691)
345 PF05327 RRN3: RNA polymerase 29.1 7.5E+02 0.016 26.6 13.3 138 30-179 10-162 (563)
346 PF11640 TAN: Telomere-length 28.8 1.9E+02 0.0042 25.3 6.6 31 143-174 6-36 (155)
347 PF12783 Sec7_N: Guanine nucle 28.6 4E+02 0.0088 23.3 9.7 99 157-257 37-148 (168)
348 PF11935 DUF3453: Domain of un 28.3 5.2E+02 0.011 24.5 11.4 110 152-261 3-151 (239)
349 PF12783 Sec7_N: Guanine nucle 28.3 4.1E+02 0.0089 23.3 9.7 86 94-182 68-157 (168)
350 KOG2149 Uncharacterized conser 27.9 7E+02 0.015 25.8 11.6 112 143-260 60-175 (393)
351 PF07539 DRIM: Down-regulated 27.7 1.9E+02 0.0042 25.3 6.2 30 224-253 15-44 (141)
352 PF10257 RAI16-like: Retinoic 27.3 6.5E+02 0.014 25.3 11.5 138 95-235 5-181 (353)
353 PF14663 RasGEF_N_2: Rapamycin 27.1 1.6E+02 0.0034 24.8 5.3 40 185-225 9-48 (115)
354 KOG0392 SNF2 family DNA-depend 26.9 3.7E+02 0.0081 32.1 9.6 142 143-306 818-959 (1549)
355 PF11791 Aconitase_B_N: Aconit 26.7 3.7E+02 0.008 24.1 7.7 26 101-126 96-121 (154)
356 PF14631 FancD2: Fanconi anaem 26.2 2.1E+02 0.0047 34.5 8.0 67 190-260 441-507 (1426)
357 PF07571 DUF1546: Protein of u 25.9 3.1E+02 0.0068 22.0 6.7 53 112-169 19-76 (92)
358 PF11707 Npa1: Ribosome 60S bi 25.8 6.6E+02 0.014 24.9 17.9 135 111-258 38-190 (330)
359 PF11935 DUF3453: Domain of un 25.7 2.1E+02 0.0046 27.1 6.6 56 124-179 94-153 (239)
360 KOG1949 Uncharacterized conser 25.5 5E+02 0.011 29.2 9.8 148 106-258 181-334 (1005)
361 KOG1924 RhoA GTPase effector D 25.0 1.1E+03 0.023 27.0 14.2 100 157-257 207-319 (1102)
362 PF08389 Xpo1: Exportin 1-like 24.7 1.9E+02 0.0041 24.1 5.6 61 186-250 84-148 (148)
363 smart00087 PTH Parathyroid hor 24.7 59 0.0013 21.9 1.8 15 29-43 19-33 (36)
364 PF08713 DNA_alkylation: DNA a 24.4 1.1E+02 0.0024 27.6 4.4 100 78-185 86-198 (213)
365 PF12765 Cohesin_HEAT: HEAT re 24.3 79 0.0017 21.6 2.5 25 226-250 18-42 (42)
366 PF04510 DUF577: Family of unk 24.3 5.6E+02 0.012 23.5 10.4 149 102-255 6-164 (174)
367 cd06561 AlkD_like A new struct 24.1 3E+02 0.0065 24.4 7.1 75 103-187 109-186 (197)
368 KOG0567 HEAT repeat-containing 22.8 7.4E+02 0.016 24.4 15.0 29 99-127 67-97 (289)
369 PF10273 WGG: Pre-rRNA-process 22.7 2E+02 0.0044 22.7 4.9 32 6-42 11-42 (82)
370 smart00567 EZ_HEAT E-Z type HE 22.7 1.3E+02 0.0028 18.4 3.1 14 114-127 2-15 (30)
371 PF12074 DUF3554: Domain of un 22.6 2.4E+02 0.0053 27.9 6.7 77 70-148 174-254 (339)
372 PF08623 TIP120: TATA-binding 22.5 5.9E+02 0.013 23.1 11.4 73 72-150 41-115 (169)
373 smart00802 UME Domain in UVSB 22.5 3.3E+02 0.0071 22.7 6.4 58 70-131 27-86 (107)
374 PF08767 CRM1_C: CRM1 C termin 22.4 7.6E+02 0.017 24.4 12.5 178 77-256 46-248 (319)
375 PF12726 SEN1_N: SEN1 N termin 22.1 1.1E+03 0.024 26.1 13.5 57 199-255 496-553 (727)
376 PF12031 DUF3518: Domain of un 21.6 1.8E+02 0.0038 28.3 5.0 82 156-238 138-228 (257)
377 PF01465 GRIP: GRIP domain; I 21.4 2.4E+02 0.0052 19.8 4.5 33 103-135 11-43 (46)
378 PF09324 DUF1981: Domain of un 20.9 3.7E+02 0.008 21.2 6.1 60 101-165 19-82 (86)
379 PRK13781 paaB phenylacetate-Co 20.5 38 0.00082 27.8 0.3 26 316-341 46-75 (95)
380 PF11157 DUF2937: Protein of u 20.5 6E+02 0.013 22.9 8.1 88 76-164 33-123 (167)
381 PF08064 UME: UME (NUC010) dom 20.4 3.3E+02 0.0071 22.4 6.0 69 141-214 11-84 (107)
382 PF07923 N1221: N1221-like pro 20.0 1.7E+02 0.0037 28.6 4.8 52 185-236 61-126 (293)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-51 Score=400.65 Aligned_cols=313 Identities=50% Similarity=0.673 Sum_probs=292.9
Q ss_pred CCCCC------CChHHHHHHHHhcC--CCCCCCCCCC-------------HHHHHHHHHHHhhCC---ccHHHHHHHHHH
Q 016280 1 MAKDG------PNWDGLLKWSLAHS--DGTRSTRNLS-------------EEDRRWFMEAMQSQT---VDVIKRMKEITL 56 (392)
Q Consensus 1 ~~~~~------~~~~gLLkwsi~~s--d~~~~~~~~s-------------~E~~~~L~~Al~~~~---~D~~~~mk~~~~ 56 (392)
|+.+| ++|+|+++|++.++ +|+.+...++ +||++|+.++|...+ .|.+++||.+..
T Consensus 1 ~~~~G~~~~~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~ 80 (342)
T KOG2160|consen 1 MSIEGGSHVRPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLKDEKEDRKWLQELMQAHTEDQKDFVEDMKVISD 80 (342)
T ss_pred CCCCCcccccCccccchhhcccccccccCCCchhhhccchhhhhhhccCcccchHHHHHHHHHhhhhhhhhcccchhHHH
Confidence 66777 99999999999999 7888888888 999999999999986 888999999999
Q ss_pred HhcC-cHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 016280 57 VMQT-PEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ 135 (392)
Q Consensus 57 ~l~~-~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~ 135 (392)
+|+. |...+++.+.++++++++|++|++|||+||||++|+++|||.+++.+|++++++||+.|+|+||+++||||++|+
T Consensus 81 ~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe 160 (342)
T KOG2160|consen 81 VMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQE 160 (342)
T ss_pred HHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9988 777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhh
Q 016280 136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~ 213 (392)
.|++.|++++|+.+|.++.+.++|+||+||||+++|++++++..|...+|+.+|..+|++ .+.++|+||++++++|+.
T Consensus 161 ~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 161 QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999998889999999999999999999999999999999999999999 679999999999999999
Q ss_pred cCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHH
Q 016280 214 ENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGA 293 (392)
Q Consensus 214 ~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~ 293 (392)
.+++..+.+...|+...++.+....+.+++|+++.++..+........ ++ ..+...+++.|+++++.++ ++.+
T Consensus 241 ~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~-~~-~~~~~~l~e~l~~~~q~~~-----~~~~ 313 (342)
T KOG2160|consen 241 EDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK-EL-FVSLLNLEELLKSLIQIIS-----DHAA 313 (342)
T ss_pred hhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc-hh-hhhhhhHHHHHHHHHHHHH-----HHHH
Confidence 999999999999999999999999999999999999999888776443 34 6778889999999999888 6789
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccce
Q 016280 294 AREERHLVDSLWNACYNEPSSLRDKGL 320 (392)
Q Consensus 294 ~~ee~~~~~~L~~~~f~~~~~~~~~~~ 320 (392)
++++.+||+.+|.+||..|+.+|+.+.
T Consensus 314 ~~~e~~l~~~l~~~~~e~~~~~~~~~~ 340 (342)
T KOG2160|consen 314 LEEERQLVNSLWEICGEVPSILRKLLG 340 (342)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhc
Confidence 999999999999999999999998753
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-27 Score=241.61 Aligned_cols=254 Identities=18% Similarity=0.224 Sum_probs=222.0
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
.+.-..+|-..|.++.. ..+..+.+++.|.++.++.||.+++..|+++|.|+||+++.+.|.+++.++++|++++|+.+
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~ 202 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL 202 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence 34445677788888776 44788999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+.........+.++|+||++|||..|....-.....+++|..++++.|..+...|||+|+||+.+.++..+.+++.|+++
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP 282 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence 88765568999999999999999866665555788999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-HHHh-----------hhcCCChhhHHHHHH
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-ERIK-----------GISLMSPEDLGAARE 296 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-~~~~-----------~i~~~~~ed~~~~~e 296 (392)
.|+.+|.+....++..||++++|++++++.++...+ .+.+..|..++. +..+ .|..++.++++++.+
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid 362 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID 362 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999999999999999999999999996543322 478888888888 3333 344478888888888
Q ss_pred HHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 297 ERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 297 e~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
- .++..|++.+-..+..+|||++|+|+.
T Consensus 363 a-~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 363 A-NLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred c-ccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 6 788888888888889999999999873
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.9e-26 Score=222.65 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=215.0
Q ss_pred HHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCH
Q 016280 79 LDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDV 156 (392)
Q Consensus 79 L~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~ 156 (392)
...|.++...- +....+++.|++|.++.+|.+++.+||.+|.|+||++|.+.+.|++.|+++|++.+|+.+|.+. .+.
T Consensus 136 aWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i 215 (526)
T COG5064 136 AWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI 215 (526)
T ss_pred HHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH
Confidence 34444443322 3345566789999999999999999999999999999999999999999999999999998754 456
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc
Q 016280 157 TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 236 (392)
Q Consensus 157 ~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~ 236 (392)
.+.+.+.|.||++||+..|....-...-.+++|.+++.+.|+.+...|||+|+||.....+..+.+++.|..++|+++|.
T Consensus 216 smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs 295 (526)
T COG5064 216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS 295 (526)
T ss_pred HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence 89999999999999997665555556778999999999999999999999999999988888999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCChh---hhhhhhhhHHHHHHHHHHHHhhhcC-----------CChhhHHHHHHHHHHHH
Q 016280 237 SEDPDVREAALRGLLELAREKADG---SAIKLAEDNEKLKQLLGERIKGISL-----------MSPEDLGAAREERHLVD 302 (392)
Q Consensus 237 ~~d~~v~E~aL~aL~~L~~~~~~~---~~~~~~~~~~~L~~~L~~~~~~i~~-----------~~~ed~~~~~ee~~~~~ 302 (392)
+++..++..+++.+++|+++++.. +..| +.+..|+.+|.+..+.|++ +|.+++.++.+- .++.
T Consensus 296 ~~sa~iqtPalR~vGNIVTG~D~QTqviI~~--G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~-nliP 372 (526)
T COG5064 296 HESAKIQTPALRSVGNIVTGSDDQTQVIINC--GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDA-NLIP 372 (526)
T ss_pred CccccccCHHHHhhcCeeecCccceehheec--ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhc-ccch
Confidence 999999999999999999999843 4455 8999999999887766655 788888888885 6778
Q ss_pred HHHHHHhCCCccccccceeeccCCCC---CCcccc
Q 016280 303 SLWNACYNEPSSLRDKGLLVLPGEDA---PPPDVA 334 (392)
Q Consensus 303 ~L~~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~ 334 (392)
.|.+..-.-...+|||+||+++.--. .-||..
T Consensus 373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 88887777788899999999986543 445763
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.9e-18 Score=174.31 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=204.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
+++....+...+..+...-.+ -+..+..|.++.++.+|. +.++.+|..|+|+|.++|..+...-+.|++.|++|.|+
T Consensus 79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi 158 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI 158 (514)
T ss_pred CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence 445566777788877776654 455556699999999996 56799999999999999999888888899999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV-KFQRKALNLIQYLLNENASDCSVVDKLG 226 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~-kl~~kA~~lLs~L~~~~~~~~~~l~~~G 226 (392)
+++.+ ++..|+..|+|||+|++.+.+.....++.+|+++.|..++...+. .+.+.+.|+|++||.+.......-.-..
T Consensus 159 ~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 159 QLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 99887 688999999999999999999889999999999999999988764 8999999999999987644333344457
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHHHh-----------hhcCCChhhHHHH
Q 016280 227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIK-----------GISLMSPEDLGAA 294 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~~~-----------~i~~~~~ed~~~~ 294 (392)
+++.|..|+.+.|.++..-|+.||..|+.+.+..+.-.+ .+...+|..+|.+.-- .|-.++.++-+.+
T Consensus 238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence 899999999999999999999999999988885422111 3566777777765432 2333666665555
Q ss_pred HHHHHHHHHHHHHHhCCCcc-ccccceeeccCCCC
Q 016280 295 REERHLVDSLWNACYNEPSS-LRDKGLLVLPGEDA 328 (392)
Q Consensus 295 ~ee~~~~~~L~~~~f~~~~~-~~~~~~~~~~~~~~ 328 (392)
..- .....|....++.+.. ||||++|+||.=-+
T Consensus 318 i~~-~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 318 INS-GALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred Hhc-ChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 553 5678888888855544 99999999997443
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.77 E-value=1.8e-17 Score=191.31 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=198.1
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 154 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~ 154 (392)
++.+.+.|..++.|+.++.-|...|++++|+.+|.+.+.++|..++|+|..++.++...++.|.+.|+++.|+++|.++
T Consensus 380 qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~- 458 (2102)
T PLN03200 380 QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS- 458 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-
Confidence 4778888999999999999999999999999999999999999999999999999899999999999999999999984
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L 234 (392)
+..++..|+++|++++.+++.....++++||++.|+++|.+++.++|..|+|+|.+|+.+.+..+..+.+.|+++.|+++
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 68999999999999999888888899999999999999999999999999999999998644445556688999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCChhhh----hhhhhhHHHHHHHHHHHHhhhcC-CChhhH-HHHHHHHHHHHHHHHHH
Q 016280 235 ASSEDPDVREAALRGLLELAREKADGSA----IKLAEDNEKLKQLLGERIKGISL-MSPEDL-GAAREERHLVDSLWNAC 308 (392)
Q Consensus 235 L~~~d~~v~E~aL~aL~~L~~~~~~~~~----~~~~~~~~~L~~~L~~~~~~i~~-~~~ed~-~~~~ee~~~~~~L~~~~ 308 (392)
|++++..+++.|+.+|.+|+.+...... ..+.+.....+...-.-+..|-. .+.+|. ........-++.|....
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 9999999999999999999876653321 11122222222221112222211 111110 00011124567888888
Q ss_pred hCCCccccccceeeccC
Q 016280 309 YNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 309 f~~~~~~~~~~~~~~~~ 325 (392)
-++...++++++|+|..
T Consensus 619 ~sgs~~ikk~Aa~iLsn 635 (2102)
T PLN03200 619 SSSKEETQEKAASVLAD 635 (2102)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 88888899998888744
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.73 E-value=2.3e-16 Score=182.20 Aligned_cols=176 Identities=16% Similarity=0.124 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+.+.++.+...|.+++.. .++...+.+.||+++|+.+|.+++..+|..|+|+|++++..|+..+..|++.|++|+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 467888999999999965 5778899999999999999999999999999999999999999888999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
|.+ ++..++..|+|||+|++.+.+..+..+...|+++.|+.+|.+.+.+.|..|+|+|.+|+...... .++
T Consensus 497 L~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~--------~I~ 567 (2102)
T PLN03200 497 LET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA--------TIS 567 (2102)
T ss_pred HcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh--------HHH
Confidence 987 47899999999999999875555555667899999999999999999999999999998643221 225
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
.++.+|.+++..++.+++++|.++..
T Consensus 568 ~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 568 QLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 55555555555666666655555543
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.61 E-value=6.2e-15 Score=143.32 Aligned_cols=188 Identities=20% Similarity=0.192 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCC-ChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iD-nA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
.++|-+.+|...+.++++-.. ....+.+.|....|+.+|.|++..|+.-|...+|+++..+..--+.++.+|+++.+..
T Consensus 255 ~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~ 334 (526)
T COG5064 255 RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRS 334 (526)
T ss_pred cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHH
Confidence 467888999999999998664 4566778899999999999999999999999999999987755566889999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC---CcchHHHHhc
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN---ASDCSVVDKL 225 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~---~~~~~~l~~~ 225 (392)
+|.+. ...+|+.|.|.||++.-++....+++++.+-+|+|+++|.+-+-++|..|||++++...+. |.....+++.
T Consensus 335 lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q 413 (526)
T COG5064 335 LLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ 413 (526)
T ss_pred HhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc
Confidence 98874 4599999999999999999999999999999999999999999999999999999998663 3446788999
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 226 GFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
|+|+.|..+|...+-.+.+.+|.++.++.....
T Consensus 414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred cchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 999999999999898899999999999887665
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1e-14 Score=142.77 Aligned_cols=241 Identities=17% Similarity=0.178 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC--CHHHHHHhhC
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFA 151 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g--~l~~Ll~LL~ 151 (392)
..-.++..|..+.+.-+|.+.++..||+|.|+.+|.+++..+|.+++.+|++++-. ...+..+.+.+ .++.|+++++
T Consensus 183 vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 183 VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMD 261 (550)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHh
Confidence 34568889999999999999999999999999999999999999999999999975 45667777877 8999999976
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
+ .++.++..|..||.++... ..-+..++++|++|.++++|+++.-++-...++.|+++.- .+.+...+.+.|+++.|
T Consensus 262 ~-~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pL 338 (550)
T KOG4224|consen 262 D-GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPL 338 (550)
T ss_pred C-CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHH
Confidence 6 5789999999999999865 4567788899999999999999988888888999999986 46777788999999999
Q ss_pred HHhhcCCC-hHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHH-------HHhh---hcCCChhhHHHHHHHHH
Q 016280 232 LHLASSED-PDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGE-------RIKG---ISLMSPEDLGAAREERH 299 (392)
Q Consensus 232 v~LL~~~d-~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~-------~~~~---i~~~~~ed~~~~~ee~~ 299 (392)
|.+|+-.| ..+|-+|..+|.+|+..........+ .++-++|++++.. ++.. +-.++.+|.+++.+- .
T Consensus 339 VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~-g 417 (550)
T KOG4224|consen 339 VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDS-G 417 (550)
T ss_pred HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhc-C
Confidence 99999655 55999999999999885543222211 3566777777652 2221 111566666555553 6
Q ss_pred HHHHHHHHHhCCCccccccc
Q 016280 300 LVDSLWNACYNEPSSLRDKG 319 (392)
Q Consensus 300 ~~~~L~~~~f~~~~~~~~~~ 319 (392)
+|+-|+.-.|.+.-++|..+
T Consensus 418 i~~iLIp~t~s~s~Ev~gNa 437 (550)
T KOG4224|consen 418 IIPILIPWTGSESEEVRGNA 437 (550)
T ss_pred CcceeecccCccchhhcccH
Confidence 78888888888888888763
No 9
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.59 E-value=1.8e-15 Score=123.31 Aligned_cols=84 Identities=39% Similarity=0.495 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHhcCCC---CCCCC--CCCHHHHHHHHHHHhhC--CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHH
Q 016280 5 GPNWDGLLKWSLAHSDG---TRSTR--NLSEEDRRWFMEAMQSQ--TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIED 77 (392)
Q Consensus 5 ~~~~~gLLkwsi~~sd~---~~~~~--~~s~E~~~~L~~Al~~~--~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~ 77 (392)
.++++|||||||+||.. +.++. .-.+++++|..++|... .++++++||+++.++.++ +.+.|+++.
T Consensus 2 ~~~l~~LLkWsI~ns~~~~~~~~~~~~~~~~~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~-------~~t~edk~~ 74 (92)
T PF08609_consen 2 DPNLNGLLKWSIENSTTSASDAPPSAEQPDEERRQLDPEALDALFGGPSDAELMKEAMEVLEDP-------EVTLEDKLI 74 (92)
T ss_pred CHHHHHHHHHHHHcCCCCccccccCcCCchhhhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCC-------CCCHHHHHH
Confidence 36899999999999942 22221 22234566666665553 488999999999988764 468899999
Q ss_pred HHHHHHHhhcCCCChHHH
Q 016280 78 MLDELQEHVESIDMANDL 95 (392)
Q Consensus 78 aL~~L~~lve~iDnA~d~ 95 (392)
||+.|++|||+|||||++
T Consensus 75 Ald~le~LVE~IDNANnl 92 (92)
T PF08609_consen 75 ALDNLEELVENIDNANNL 92 (92)
T ss_pred HHHHHHHHHHcccccccC
Confidence 999999999999999985
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.53 E-value=2.7e-13 Score=112.49 Aligned_cols=118 Identities=26% Similarity=0.303 Sum_probs=110.8
Q ss_pred HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280 94 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 94 d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
.|++.|+++.++.+|.+++..+|..|+++|++++.++|.....+++.|+++.|+.++.+ .++.++..|+|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 47889999999999999999999999999999999999899999999999999999886 58899999999999999998
Q ss_pred cccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 174 KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 174 ~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
+.....+...|+++.|.+++.+.+.+++..++++|.+|+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 877888888999999999999999999999999999987
No 11
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.7e-12 Score=125.99 Aligned_cols=205 Identities=16% Similarity=0.198 Sum_probs=172.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
++..+-.|--.|..+..+-.+...++..|++|.++++|+++.-.+-.....||.+++-. |-.-..|.+.|.+.||+++|
T Consensus 264 s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL 342 (550)
T KOG4224|consen 264 SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLL 342 (550)
T ss_pred ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHH
Confidence 33455567778888889999999999999999999999998877777788888887743 43445578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
....+++++..|...|-++.-.+..+...|...|+++.|..++......+|.....+++.|+- +..++..+.+.|+++.
T Consensus 343 ~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld~gi~~i 421 (550)
T KOG4224|consen 343 RAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLDSGIIPI 421 (550)
T ss_pred hcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcce
Confidence 987778899999999999998888899999999999999999999888888888888887775 4677899999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhhhhhhhhHHHHHHHHH
Q 016280 231 MLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEKLKQLLG 277 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~~~~~~~~~~L~~~L~ 277 (392)
|+.++.+.+.+++..++.+|.|++.+-. ..++++..+|...+...|.
T Consensus 422 LIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~ 470 (550)
T KOG4224|consen 422 LIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLA 470 (550)
T ss_pred eecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHH
Confidence 9999999999999999999999998765 3455555666655554443
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.44 E-value=2.1e-12 Score=107.16 Aligned_cols=119 Identities=29% Similarity=0.313 Sum_probs=110.0
Q ss_pred HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280 136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 215 (392)
Q Consensus 136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~ 215 (392)
.+++.|+++.|+.++.+ .+..++..++++|++++.+.+.....|+..|+++.|..+|.+++.+++..|+++|++|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 36788999999999886 46899999999999999998888899999999999999999999999999999999999887
Q ss_pred CcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 216 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 216 ~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
+.....+.+.|+++.+++++...+..+++.++.+|.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7777888999999999999999999999999999999863
No 13
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6e-10 Score=109.79 Aligned_cols=180 Identities=19% Similarity=0.226 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 154 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~ 154 (392)
+....+...+.++..+...++.++ ++....-..+.+.+=|..|..-|-..+.+-... ..++..||+.+|+..+.+ +
T Consensus 61 ~~~~~e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~~l~~-~ 136 (342)
T KOG2160|consen 61 MQAHTEDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLGYLEN-S 136 (342)
T ss_pred HHHhhhhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHHHhcC-C
Confidence 334455566788888888888887 222222224567888999999999999875544 558999999999997665 6
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH 233 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~ 233 (392)
+.++|..|+|.|+.+++|+|..+..+.+.||++.|..++.++ +..++.||++++++|+++++.....|...+....|..
T Consensus 137 ~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~ 216 (342)
T KOG2160|consen 137 DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRD 216 (342)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHH
Confidence 889999999999999999999999999999999999999875 5789999999999999999999999999988999999
Q ss_pred hhcC--CChHHHHHHHHHHHHHHcCCC
Q 016280 234 LASS--EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 234 LL~~--~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+.+ .+..++.+++..+..+.....
T Consensus 217 vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 217 VLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 9998 667788999999999887665
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.16 E-value=2.6e-09 Score=112.24 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+.|+.+.+.+.|..+++..+...- .-+..+.|...|.|+++.||..+++.|+.+++++....+.+.+.+.++.++.++
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL 128 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence 557777888888888887755444 345567788999999999999999999999999988778788889999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
.. ++..|...|+-+|+.++++ +.....++..+++..|..++...+..+|.++..++..++..+++..+.+.+.|+++.
T Consensus 129 ~~-~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ 206 (503)
T PF10508_consen 129 RD-PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDL 206 (503)
T ss_pred cC-CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHH
Confidence 65 6889999999999999976 456666778889999999999888889999999999999988888899999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 231 MLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
++..|.++|.-+|..|+.+|..|+...
T Consensus 207 ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 207 LLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 999999999999999999999999933
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.7e-08 Score=98.72 Aligned_cols=221 Identities=14% Similarity=0.184 Sum_probs=167.2
Q ss_pred HHHHHHHHhhCCccHHHHHHH-HHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCC----------CChHHHHHcCCh
Q 016280 33 RRWFMEAMQSQTVDVIKRMKE-ITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESI----------DMANDLHSIGGL 101 (392)
Q Consensus 33 ~~~L~~Al~~~~~D~~~~mk~-~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~i----------DnA~d~~~lGgl 101 (392)
.+|++.|--...+.--..|+- ++.+|..+ +...+.+ +-.-++.+.|.-++-+- ..|+.|.+.||+
T Consensus 168 ~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~---l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l 243 (461)
T KOG4199|consen 168 LQWLQKACIMHEVNRQLFMELKILELILQV---LNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGIL 243 (461)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHH---HcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhH
Confidence 688887743321111112332 33444322 2223333 33334555666555433 479999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHH---HHHHHHHHHhhcCCcccH
Q 016280 102 APLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVR---TKALGAISSLIRHNKPGI 177 (392)
Q Consensus 102 ~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr---~kAl~ALS~lvR~~~~~~ 177 (392)
..|+..|.. -++++-..++-.|+++|-+++.||. |.+.||+..|++++....+..+| +.++..|+.+. ++....
T Consensus 244 ~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvK 321 (461)
T KOG4199|consen 244 TALTEALQAGIDPDSLVSLSTTLKALAVRDEICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVK 321 (461)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchH
Confidence 999999975 5789999999999999999999987 89999999999998864444555 55666677776 566788
Q ss_pred HHHHHcChHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CC-ChHHHHHHHHHHHHH
Q 016280 178 EAFRLANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SE-DPDVREAALRGLLEL 253 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~--s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~-d~~v~E~aL~aL~~L 253 (392)
..+++.||.+.|+.++. ++++.+-..++..++.|+-..|++...+++.|+-...++-++ ++ ...+|..+..++.||
T Consensus 322 s~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNi 401 (461)
T KOG4199|consen 322 STIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNI 401 (461)
T ss_pred HHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 89999999999998874 578999999999999999999999999999999999998887 33 467999999999999
Q ss_pred HcCCCh
Q 016280 254 AREKAD 259 (392)
Q Consensus 254 ~~~~~~ 259 (392)
+.++..
T Consensus 402 v~rs~~ 407 (461)
T KOG4199|consen 402 VVRSAE 407 (461)
T ss_pred HHhhhh
Confidence 988754
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.2e-08 Score=99.85 Aligned_cols=186 Identities=16% Similarity=0.236 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-CCHHHH---HHHHHHHHHHhhCCHHHHHHHHHcCCHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-SHANIR---AKAGEVVTTIVQNNPRSQQLVMEANGLEP 145 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR---~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~ 145 (392)
.+++.+..+.-.|..+--.-+....+.+.||+..|++++.+ .+.+.| ..++..|..+|.+. .++..|++.||++.
T Consensus 254 ~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 254 IDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDK 332 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHH
Confidence 34454544444444444444556677889999999999976 445555 56777778888764 48889999999999
Q ss_pred HHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 146 LLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 146 Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
++.++. ...++.|-..++-+||-++--.|.....|++.||-...++.|+.. ...+|+.|||+|++++....+++..+
T Consensus 333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~ 412 (461)
T KOG4199|consen 333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL 412 (461)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH
Confidence 998854 445788989999999998877888888999999999999999864 37899999999999998888888888
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
...| ++.|+..-+..+.++...+-.+|..|--+.
T Consensus 413 l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 413 LANG-IEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred Hhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 8887 667777777778888777777776554333
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.98 E-value=1.2e-08 Score=98.09 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=123.7
Q ss_pred HHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 96 HSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 96 ~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
...+.++.|+.+|++ .++.+++.|..++|+++. .|..|+.+.+.|+++.+..++.+ +++.+|.+|++||.++..+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~- 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVND- 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCCh-
Confidence 345668899999985 689999999999999875 68999999999999999999877 68999999999999998654
Q ss_pred ccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 175 PGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
..+..+- .-.-.++...... -+..+|..++.+|.+|+..+ .....+ .+.++.++.||.+++..++.+++++|.+|
T Consensus 86 en~~~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 86 ENQEQIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3454442 2233333333443 37899999999999997543 223333 24788999999999999999999999999
Q ss_pred HcCCC
Q 016280 254 AREKA 258 (392)
Q Consensus 254 ~~~~~ 258 (392)
+.+..
T Consensus 162 S~np~ 166 (254)
T PF04826_consen 162 SENPD 166 (254)
T ss_pred ccCHH
Confidence 98775
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.92 E-value=1.5e-07 Score=90.62 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=142.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
++.-.+.++-.+......--+-.-+.+.||++.+..+|.++++.+|..|.+++.+++.+ .+.|..+-. .++.+++..
T Consensus 26 dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~~Ik~--~i~~Vc~~~ 102 (254)
T PF04826_consen 26 DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQEQIKM--YIPQVCEET 102 (254)
T ss_pred ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHHHHHH--HHHHHHHHH
Confidence 34455666666666555444556667899999999999999999999999999999876 446665533 477777754
Q ss_pred CCC-CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 151 ASD-PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 151 ~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
.+. .+..++..++.+|.++...+. ....+ .+.++.+.++|.+.+.++|..++.+|.+|+. ++.....++..+++.
T Consensus 103 ~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~ 178 (254)
T PF04826_consen 103 VSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLS 178 (254)
T ss_pred hcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchh
Confidence 443 467899999999999976543 23333 5689999999999999999999999999985 577777888889999
Q ss_pred HHHHhhcCC-ChHHHHHHHHHHHHHHcCCC
Q 016280 230 LMLHLASSE-DPDVREAALRGLLELAREKA 258 (392)
Q Consensus 230 ~Lv~LL~~~-d~~v~E~aL~aL~~L~~~~~ 258 (392)
.++.|+... +.++...++..+.+|..+-.
T Consensus 179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 179 SFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 999999865 67889999999999966554
No 19
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.89 E-value=6.5e-08 Score=104.58 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=150.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD 155 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~ 155 (392)
-.++..|.++.++..+-..+++.|++++|+++|.+.+.++...+..+|..++-.. .++..+.+.|++++|++++.++ +
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~-~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSE-N 344 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCC-C
Confidence 3567789999999999999999999999999999999999999999999999764 4788899999999999999884 6
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 016280 156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA 235 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL 235 (392)
..++..++.+|-|+.-+ +.....++..|.+|.|+.+|.+++ .+.-++.+|++|+.. ...+..|...+.++.++.++
T Consensus 345 ~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHH
Confidence 78999999999999854 567889999999999999998654 456688889998864 56778888889999999975
Q ss_pred c-CCChHHHHHHHHHHHHHHcCCC
Q 016280 236 S-SEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 236 ~-~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
- .++..+...++.++.|++.+..
T Consensus 421 l~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 421 LENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HhCCCccccHHHHHHHHHHhcCHH
Confidence 5 5566676667788888888765
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.85 E-value=4.9e-07 Score=95.10 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
++.-+.-++..|..+++..+.+ .-+.+.+.++.++.+|.+++.+|...|+.+|..++.+.+..+ .++..+.+..|..+
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~-~l~~~~~~~~L~~l 168 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE-QLFDSNLLSKLKSL 168 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH-HHhCcchHHHHHHH
Confidence 4456677788888888877664 445567888888999999999999999999999999877664 47788889999998
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+.+ .+..+|.++...+..++++++.........|-++.++..|.++|.-+|..|+-+|..|+. .+...+.+.+.|+++
T Consensus 169 ~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~ 246 (503)
T PF10508_consen 169 MSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFD 246 (503)
T ss_pred Hhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHH
Confidence 776 467899999999999999999888888899999999999999999999999999999998 678889999999999
Q ss_pred HHHHhhcCC--Ch---HHH-HHHHHHHHHHHcCCChhh
Q 016280 230 LMLHLASSE--DP---DVR-EAALRGLLELAREKADGS 261 (392)
Q Consensus 230 ~Lv~LL~~~--d~---~v~-E~aL~aL~~L~~~~~~~~ 261 (392)
.|+.++... |+ .+. -..+...++++...+..+
T Consensus 247 ~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 247 KLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred HHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 999999743 22 122 233367777877655433
No 21
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.84 E-value=2.2e-07 Score=100.49 Aligned_cols=179 Identities=11% Similarity=0.095 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+.+-...++..|..|.-.-+|...+.+.|.++.|++++.+++..++..|.++|.|++.+ +..+..+++.|.+|+|+.+|
T Consensus 303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh
Confidence 44556667788888888889999999999999999999999999999999999999976 66788999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
.++. .+.-++..|.+++.. ..+...|...+.++.|++++-+ ++.++...++.++.+|+.+ +.+.+.+++.|.++
T Consensus 382 ~d~~---~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~ 456 (708)
T PF05804_consen 382 KDPN---FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQ 456 (708)
T ss_pred CCCc---hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHH
Confidence 7643 445566666666654 4577889888999999987654 6778888889999999864 66778888888899
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.|+...-.....+ .+..|.|++.|.+
T Consensus 457 ~L~~ra~~~~D~l---LlKlIRNiS~h~~ 482 (708)
T PF05804_consen 457 SLMKRALKTRDPL---LLKLIRNISQHDG 482 (708)
T ss_pred HHHHHHHhcccHH---HHHHHHHHHhcCc
Confidence 9988654322222 2367788888874
No 22
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.73 E-value=3.3e-07 Score=96.08 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=132.0
Q ss_pred CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 016280 89 IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 168 (392)
Q Consensus 89 iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~ 168 (392)
|+++..|...--...+.......+...++.||.++-+++..-.-.+.-+-..++..+||+++ .+++..+...+++||.|
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICN 445 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHH
Confidence 67777776554444444444567888898899888877754333333322336788999997 45788999999999999
Q ss_pred hhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc-hHHHHHhhcCCChHHHHHHH
Q 016280 169 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF-PRLMLHLASSEDPDVREAAL 247 (392)
Q Consensus 169 lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~-v~~Lv~LL~~~d~~v~E~aL 247 (392)
+|-.+.+-+..|+..||+..|...+.+++..+|.++.|+|+++.-...+......-..+ -..++.+..+++..|||.++
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF 525 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765544333322333 34567788899999999999
Q ss_pred HHHHHHHcCCCh
Q 016280 248 RGLLELAREKAD 259 (392)
Q Consensus 248 ~aL~~L~~~~~~ 259 (392)
..|.|++-++..
T Consensus 526 qllRNl~c~~~~ 537 (678)
T KOG1293|consen 526 QLLRNLTCNSRK 537 (678)
T ss_pred HHHHHhhcCcHH
Confidence 999999988653
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.71 E-value=9.9e-07 Score=87.16 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHHhhcCC-CChHHHHHcC------ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCH
Q 016280 71 TPQDIEDMLDELQEHVESI-DMANDLHSIG------GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGL 143 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lG------gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l 143 (392)
..+-+.-.|-.+.+++.+. ....-|+... -+.++++++.+++.-++..|+.+++.++...+....... .+.+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l 148 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEAL 148 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHH
Confidence 3455566777777777766 4566666632 589999999999999999999999999876664444322 4567
Q ss_pred HHHHHhhCCC---CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-----cC--CCHHHHHHHHHHHHHHhh
Q 016280 144 EPLLSNFASD---PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-----GS--ESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 144 ~~Ll~LL~s~---~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-----~s--~d~kl~~kA~~lLs~L~~ 213 (392)
+.+++.+.+. .+..++.-|+.+++.++|. +.....|...+|++.|..++ .+ .+..++=.+++++--|+-
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 7888777653 2345778999999999976 56788899999999999999 22 347788888888877764
Q ss_pred cCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCCh
Q 016280 214 ENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 214 ~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
++...+.+.+.++++.|+.+++ +....+..-++.+|.|++.....
T Consensus 228 -~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 228 -EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp -SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred -CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 4566777888889999999998 45677888899999999988874
No 24
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=3.3e-07 Score=99.94 Aligned_cols=184 Identities=19% Similarity=0.134 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHhhcCCCChHHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280 74 DIEDMLDELQEHVESIDMANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~-~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
-+.+||.-|..+++---.|.++. ..|.+|.+++||+++-.++|---+.+-+.|..-.|.||..+++.+|-...++.|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 36789999999999889998887 67999999999999999999999999999988889999999999998888888775
Q ss_pred C--CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 153 D--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 153 ~--~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
. -+++-|.-|+|-|+.++++++.+++.....+-+.+....|.++ .+-+|...|-.|..|-.+..+.+-.=.+.+..+
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 2 2468999999999999999999999999999999999999885 688999999999999988777666666778999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.|+.+|.++-++||..|+.||+.+....
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999998864
No 25
>PRK09687 putative lyase; Provisional
Probab=98.62 E-value=1e-06 Score=86.01 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=84.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
.++.+..+++++++.+|+.|+|+||.+-... ..+. -.++.|..++.++++..||..|+.+|+.++......
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--- 125 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--- 125 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH-----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence 3566778889999999999999999874321 1112 246667777677788899999999999886443211
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
....+..+..++.+++..||..|+++|..+-. ...++.|+.+|.+++.+||..|+.+|+.+
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 11133445556666666777777766654421 12355566666666666666666666655
No 26
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.45 E-value=2.8e-06 Score=79.51 Aligned_cols=187 Identities=19% Similarity=0.247 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHHHHhhcCC---CChHHHHHc--CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 016280 68 QGVTPQDIEDMLDELQEHVESI---DMANDLHSI--GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANG 142 (392)
Q Consensus 68 ~~~~~e~~~~aL~~L~~lve~i---DnA~d~~~l--Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~ 142 (392)
.+.+=+.+.++|..|..++... +....|... ..+..++..+.+....|-..|+.+|+.++..-...-+.+++ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 3456788899999999998866 555555432 34556777888888889999999999999753322222222 46
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
+|.|+..+.+ +...++..|..+|-.++.+.+..... -+..+...+.++++.+|..++..+..++...+.....+
T Consensus 96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 8899998776 46789999999999999876611211 15667788899999999999999999987766222223
Q ss_pred Hh----cCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280 223 DK----LGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 261 (392)
Q Consensus 223 ~~----~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~ 261 (392)
.. ..+++.+..++.+.++++|+.|-.++..+.++.+...
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 22 2467788889999999999999999999988776543
No 27
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.41 E-value=2.3e-06 Score=91.61 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=128.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--chH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS--DCS 220 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~--~~~ 220 (392)
++..+.+|++ .++.++..|.+-|-.+|+++......+...|||+.|+.+|.+....|++.||++|.+|+-+... ++-
T Consensus 235 lpe~i~mL~~-q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMS-QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhc-cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 5677888876 5789999999999999999999999999999999999999999999999999999999976555 677
Q ss_pred HHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHh------------------
Q 016280 221 VVDKLGFPRLMLHLASS-EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIK------------------ 281 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~------------------ 281 (392)
.+.+.+.|+.++.+|+. .|.++++.+..+|+||.+...-.. ...++.+..|...+---..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~-~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM-LIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 88899999999999995 799999999999999998843111 1114444444444332111
Q ss_pred -------hhcCCChhhHHHHHHHHHHHHHHHHHHh
Q 016280 282 -------GISLMSPEDLGAAREERHLVDSLWNACY 309 (392)
Q Consensus 282 -------~i~~~~~ed~~~~~ee~~~~~~L~~~~f 309 (392)
.+..-+.|..+..++.-.+++.|+..|-
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence 1111245666677777777888888665
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.34 E-value=0.00017 Score=74.15 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhhcCCC-ChHHHHHc-----CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280 73 QDIEDMLDELQEHVESID-MANDLHSI-----GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL 146 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iD-nA~d~~~l-----Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L 146 (392)
+-+.-.|--+.+++..-+ .+.-|++. .-+.+++.+|++++.-|...|+.+++.++...+.........-.+..|
T Consensus 69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l 148 (429)
T cd00256 69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWL 148 (429)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 444555666666666532 35677765 468889999999999999999999999987544221211111123345
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHh
Q 016280 147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDK 224 (392)
Q Consensus 147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l~~ 224 (392)
...+.+..+...+.-++.+++.++|.. .....|...+|++.|..+|+.. +..++=.+++.+--|.-+ +...+.+.+
T Consensus 149 ~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~ 226 (429)
T cd00256 149 KEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKR 226 (429)
T ss_pred HHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhcc
Confidence 555555334567778889999999874 4677888999999999999863 457777777777666543 335556677
Q ss_pred cCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCC
Q 016280 225 LGFPRLMLHLASS-EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 225 ~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~ 257 (392)
.++|+.++.+++. .-..+..-++.+|.|+....
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 8999999999984 45667778888899988754
No 29
>PRK09687 putative lyase; Provisional
Probab=98.33 E-value=1.1e-05 Score=78.79 Aligned_cols=192 Identities=14% Similarity=0.059 Sum_probs=129.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
++.|+.+|.+++..+|+.|++.|+.+-. ..+++.+..++.+ .++.+|..|+++|+.+-.....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccc-----
Confidence 7889999999999999999999987642 2245566776554 5889999999999998543211
Q ss_pred HHcChHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC-
Q 016280 181 RLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA- 258 (392)
Q Consensus 181 ~~~gGl~~L~~l-L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~- 258 (392)
....++.|..+ +++++..||..|+.+|.++....... ...++..+..++.+++..||..++.+|+.+-...-
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai 161 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAI 161 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHH
Confidence 22356777766 67788999999999999997543221 11245567777888999999999999976642111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 259 DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 259 ~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
+....++.++...++..-...+..+.. .+ -+..+.|+.........+|.++++.|-.
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~---~~-------~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY---DN-------PDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC---CC-------HHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 112222233333333333333333311 01 1455667888888888999998888853
No 30
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1e-05 Score=87.03 Aligned_cols=177 Identities=23% Similarity=0.226 Sum_probs=143.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHc-----CChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 77 DMLDELQEHVESIDMANDLHSI-----GGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~l-----Ggl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
..++.|.++||.+-..+.-.-- -.+|.|+.+|++ .+.+|.-.||.+|.+++.--|..-..++++++||.|+.-|
T Consensus 184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL 263 (1051)
T KOG0168|consen 184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKL 263 (1051)
T ss_pred HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhh
Confidence 3566677777766554433211 234778899988 5799999999999999999999999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPR 229 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~ 229 (392)
..=.-..|...++.||--|.|.++ .+++.+||+...+..|.=....+|++|....++.|..=+.+ ...+ +..+|
T Consensus 264 ~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealP 338 (1051)
T KOG0168|consen 264 LTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALP 338 (1051)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHH
Confidence 654567899999999999999887 47789999999999988778999999999999999753333 2233 34689
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.|..+|...|.+..|.++-++..++...-
T Consensus 339 lL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 339 LLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999877554
No 31
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=4.5e-05 Score=81.75 Aligned_cols=196 Identities=20% Similarity=0.220 Sum_probs=154.8
Q ss_pred HHhhhhCCCCHHHHHHHHHHHHHhhcCCC------C-----------hHHHHHc-CChHHHHHhhcCCCHHHHHHHHHHH
Q 016280 62 EQVLESQGVTPQDIEDMLDELQEHVESID------M-----------ANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVV 123 (392)
Q Consensus 62 ~~~l~~~~~~~e~~~~aL~~L~~lve~iD------n-----------A~d~~~l-Ggl~~Ll~lL~s~~~~IR~~Aa~vL 123 (392)
..++.....++|-+.-+||.+..++..-| + |..|++. +-+..|+.++..-+-.||+.|..+|
T Consensus 67 i~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLl 146 (970)
T KOG0946|consen 67 IQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLL 146 (970)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHH
Confidence 34455555678888889999988887653 3 3455544 4556677888999999999999999
Q ss_pred HHHhhCCH-HHHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC----C
Q 016280 124 TTIVQNNP-RSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE----S 197 (392)
Q Consensus 124 g~iaqNNp-~~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~----d 197 (392)
..+..+-| ++|.+++.. -||..|+.+|.. ..+-+|-.|++-|+.++|+++..++.+.-.+++.-|..++... .
T Consensus 147 salls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 147 SALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99888755 899999877 689999999875 4668999999999999999998888887889999999998753 2
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC---Ch------H----HHHHHHHHHHHHHcCCC
Q 016280 198 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE---DP------D----VREAALRGLLELAREKA 258 (392)
Q Consensus 198 ~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~---d~------~----v~E~aL~aL~~L~~~~~ 258 (392)
--|-..++.+|.+|+..+.++...|.+.+.|+.|.++|..+ |. + -...+|.++..++.-+.
T Consensus 226 gIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N 299 (970)
T KOG0946|consen 226 GIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN 299 (970)
T ss_pred cchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence 46788999999999999999999999999999999998732 21 1 12445666666666443
No 32
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.21 E-value=1.4e-05 Score=85.70 Aligned_cols=173 Identities=14% Similarity=0.141 Sum_probs=133.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc--cHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--GIE 178 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~--~~~ 178 (392)
++-.+.+|.+.++.++..|+.-|-.++--+.+++..+-+.|+|++||.+|.+ ...+|++.|.+|+-|++-+... +.-
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence 5677899999999999999999999999888899999999999999999998 4779999999999999988766 777
Q ss_pred HHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--------------CCChHHH
Q 016280 179 AFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--------------SEDPDVR 243 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--------------~~d~~v~ 243 (392)
++...+|++.++++|.. .|..+++.+...|-+|.+. ...+..++.. .+..|...+- ..+.++-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999986 7899999999999999865 2333333322 2333322211 1134566
Q ss_pred HHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHh
Q 016280 244 EAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIK 281 (392)
Q Consensus 244 E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~ 281 (392)
-.+..+|.|++....+ ..++| ..|...|-+.++
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c-----~GLIdaL~~~iq 427 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMREC-----DGLIDALLFSIQ 427 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhc-----cchHHHHHHHHH
Confidence 7788888888886653 35555 445555555555
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.20 E-value=0.00017 Score=81.16 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=95.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280 103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL 182 (392)
Q Consensus 103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~ 182 (392)
.|+..|.++++.||..|+.+|+.+.. +-...|+..|. +++..||..|+.+|+.+-
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~-D~d~~VR~~Av~aL~~~~------------ 742 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALG-DPDHRVRIEAVRALVSVD------------ 742 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhc-CCCHHHHHHHHHHHhccc------------
Confidence 34444455555555555555544321 11223444433 356666666666666531
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hh
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DG 260 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~ 260 (392)
..+.|..++.+++..||..++..|..+.... ...++.|..+++++++.+|..|+.+|..+..... ..
T Consensus 743 --~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~ 811 (897)
T PRK13800 743 --DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAA 811 (897)
T ss_pred --CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHH
Confidence 1233455666666777777766666664321 1225677888888888888888888887754321 11
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 261 SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 261 ~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
....+.++...+|..--..+..+.. .+.+..|...+-.+...+|++++++|-.
T Consensus 812 l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 812 ATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 2233344444444444444433331 1233555555566677788888887765
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00019 Score=77.67 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=152.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280 69 GVTPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL 146 (392)
Q Consensus 69 ~~~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L 146 (392)
+..+|-+..|...|.++||-..-. .-++..+.+|.|+ +|+.-..-+|-+++..+|-.+.+.+|+ ++++.|+|...
T Consensus 223 E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~ 299 (1051)
T KOG0168|consen 223 EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAV 299 (1051)
T ss_pred cccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHH
Confidence 345677778899999999987654 4455789999999 477889999999999999999998884 59999999998
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc---CCcchHHHH
Q 016280 147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE---NASDCSVVD 223 (392)
Q Consensus 147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~---~~~~~~~l~ 223 (392)
|..|+- -+..++++|+...+|+|..-++-.-.| ....+|.|..+|+..|.+.-+.+|-.+.+++.. .+...+.++
T Consensus 300 LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f~~-v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~ 377 (1051)
T KOG0168|consen 300 LSYLDF-FSIHAQRVALAIAANCCKSIRSDEFHF-VMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLC 377 (1051)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHh
Confidence 887763 246799999999999998765443333 467899999999999999999999999999854 444567888
Q ss_pred hcCchHHHHHhhcCCC----hHHHHHHHHHHHHHHcCCChh
Q 016280 224 KLGFPRLMLHLASSED----PDVREAALRGLLELAREKADG 260 (392)
Q Consensus 224 ~~G~v~~Lv~LL~~~d----~~v~E~aL~aL~~L~~~~~~~ 260 (392)
..|+|....+||.... ..+..-..++|..++.+++..
T Consensus 378 s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 378 SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence 8999999999998654 346677789999999998854
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.06 E-value=9.7e-05 Score=83.04 Aligned_cols=194 Identities=21% Similarity=0.231 Sum_probs=120.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
+.++.|+.+|.++++.||..|+..|+.+. ....++.|+.+| +|++..||..|+.+|..+....+.
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--- 685 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--- 685 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc---
Confidence 35678889999999999999999999764 123567788777 456888999998888777432211
Q ss_pred HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----------Ccc--h----HHHHhcCchHHHHHhhcCCChHH
Q 016280 179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----------ASD--C----SVVDKLGFPRLMLHLASSEDPDV 242 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~----------~~~--~----~~l~~~G~v~~Lv~LL~~~d~~v 242 (392)
.+.|..+|.++++.+|..|+.+|..+-... ++. + ..+.+.+-.+.|..++.+++..|
T Consensus 686 -------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 686 -------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 134455555566666666655554331110 000 0 11122233456777888889999
Q ss_pred HHHHHHHHHHHHcCCC---hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccc
Q 016280 243 REAALRGLLELAREKA---DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKG 319 (392)
Q Consensus 243 ~E~aL~aL~~L~~~~~---~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~ 319 (392)
|..++.+|..+..... ......+.++....+...-..+..+.. . -.....|......+.-.+|.++
T Consensus 759 R~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~---------~~~~~~l~~aL~d~d~~VR~~A 827 (897)
T PRK13800 759 RIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC--P---------PDDVAAATAALRASAWQVRQGA 827 (897)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c---------chhHHHHHHHhcCCChHHHHHH
Confidence 9999999988876553 223333345555555555555555432 1 0122345666666677799998
Q ss_pred eeeccC
Q 016280 320 LLVLPG 325 (392)
Q Consensus 320 ~~~~~~ 325 (392)
+.+|..
T Consensus 828 a~aL~~ 833 (897)
T PRK13800 828 ARALAG 833 (897)
T ss_pred HHHHHh
Confidence 888854
No 36
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.04 E-value=7.5e-05 Score=71.78 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 191 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~ 191 (392)
...+...|..+|--++..+|.+|..+....++..|+.+|....++.++..++.+|.+++..++.++..|-..+|+..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 34467778999999999999999999999999999999966567899999999999999999999999999999999999
Q ss_pred hhcCC--CHHHHHHHHHHHHHHhhc
Q 016280 192 ALGSE--SVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 192 lL~s~--d~kl~~kA~~lLs~L~~~ 214 (392)
++++. +..+|.|..-+|...+..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHcc
Confidence 99874 588988888776655544
No 37
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=1.3e-05 Score=55.15 Aligned_cols=41 Identities=34% Similarity=0.569 Sum_probs=37.0
Q ss_pred CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280 130 NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 171 (392)
Q Consensus 130 Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR 171 (392)
||..++.+++.|++++|+++|.+ .+..++..|+|||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 46778889999999999999885 689999999999999975
No 38
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00048 Score=76.77 Aligned_cols=150 Identities=22% Similarity=0.230 Sum_probs=114.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280 105 LGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN 184 (392)
Q Consensus 105 l~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g 184 (392)
-.+|.|++..-|..|..+|+.++...++.-...+. ..++..+..| +|+++.||..|+.||+-+..+..+..+.....-
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 35778999999999999999999886644332221 2344444443 568999999999999999999999888887777
Q ss_pred hHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchH-HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 185 GYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKL--GFPR-LMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 185 Gl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~-~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
-++.|+..+.+. +++++..|+.++-++....+.. .+.-. +++. .+..|+.++...++|.++.+|...+....
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 888899999875 5899999999999998654433 22222 4444 34446678889999999999999987554
No 39
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=3e-05 Score=61.21 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=67.6
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 101 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 101 l~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
++.|++.| +++++.+|..|+++||.+- .+ .+++.|+.++. ++++.||..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLK-DEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhC---------
Confidence 57899988 8899999999999999542 12 24888999884 579999999999999871
Q ss_pred HHHcChHHHHHHhhcCCC-HHHHHHHHHHHH
Q 016280 180 FRLANGYAALRDALGSES-VKFQRKALNLIQ 209 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs 209 (392)
....++.|.+++.+++ ..+|..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3448889999998754 566888887764
No 40
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.86 E-value=6.7e-05 Score=84.63 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=147.6
Q ss_pred cCCCChHHHHHcC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHH
Q 016280 87 ESIDMANDLHSIG-GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALG 164 (392)
Q Consensus 87 e~iDnA~d~~~lG-gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ 164 (392)
-++.|...+|... -+..||..|.+...+|..-.+.+|.|+.=+-. .....+-+.|-+..|.........+...+..|.
T Consensus 381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLS 460 (2195)
T KOG2122|consen 381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLS 460 (2195)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHH
Confidence 4666878888764 45778899999888999999999999986544 344445577889889887655445566677889
Q ss_pred HHHHhhcCCcccHHHHHH-cChHHHHHHhhcCC----CHHHHHHHHHHHHHHh---hcCCcchHHHHhcCchHHHHHhhc
Q 016280 165 AISSLIRHNKPGIEAFRL-ANGYAALRDALGSE----SVKFQRKALNLIQYLL---NENASDCSVVDKLGFPRLMLHLAS 236 (392)
Q Consensus 165 ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~----d~kl~~kA~~lLs~L~---~~~~~~~~~l~~~G~v~~Lv~LL~ 236 (392)
||.||.-|+..+...|+. -|++.+|+..|.-+ ..++-..|-..|.|.. ......++++.+.+.+..|+..|+
T Consensus 461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence 999999999889888886 58899999999743 4666667766666654 334566788999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHhhhc
Q 016280 237 SEDPDVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGIS 284 (392)
Q Consensus 237 ~~d~~v~E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~~i~ 284 (392)
+....+.-.++.+|+||...++. ...+ -++..-|+.+|....+-|.
T Consensus 541 S~SLTiVSNaCGTLWNLSAR~p~DQq~LwD--~gAv~mLrnLIhSKhkMIa 589 (2195)
T KOG2122|consen 541 SHSLTIVSNACGTLWNLSARSPEDQQMLWD--DGAVPMLRNLIHSKHKMIA 589 (2195)
T ss_pred hcceEEeecchhhhhhhhcCCHHHHHHHHh--cccHHHHHHHHhhhhhhhh
Confidence 99999999999999999888872 2222 2444555666555444433
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.86 E-value=0.00067 Score=70.86 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+.+++..++..|-.+.-.-.+.. -|+..++.++.+.+..+|..+.-.+..+...++.. .++ ++..|.+=|
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~-----~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~kdl 88 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDIS-----FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQKDL 88 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---G-----STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHHhh
Confidence 44566666666666544333222 67899999999999999999999999999999873 222 345566555
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
.+ +++.+|.-|+.+||++. .+.. ...-++.+.+++.++++.||++|+.++..+....++. +... +++.
T Consensus 89 ~~-~n~~~~~lAL~~l~~i~--~~~~-----~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~ 156 (526)
T PF01602_consen 89 NS-PNPYIRGLALRTLSNIR--TPEM-----AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPK 156 (526)
T ss_dssp CS-SSHHHHHHHHHHHHHH---SHHH-----HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHH
T ss_pred cC-CCHHHHHHHHhhhhhhc--ccch-----hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHH
Confidence 65 68899999999999987 2222 2335788899999999999999999999999876553 3344 7899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHH
Q 016280 231 MLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
+..+|.+.++.++..|+.++..+
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHH
Confidence 99999999999999999999999
No 42
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=1.5e-05 Score=54.79 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=35.6
Q ss_pred CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 90 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIV 127 (392)
Q Consensus 90 DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~ia 127 (392)
++...+++.||+++|+.+|++++.++|..|+|+|++++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999999987
No 43
>PF05536 Neurochondrin: Neurochondrin
Probab=97.84 E-value=0.0012 Score=70.17 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChH----HHHHcCChHHHHHhhcC-------CCHHHHH
Q 016280 49 KRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMAN----DLHSIGGLAPLLGYLKN-------SHANIRA 117 (392)
Q Consensus 49 ~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~----d~~~lGgl~~Ll~lL~s-------~~~~IR~ 117 (392)
..+++|+.+++.. +.+++-.+|--+..++.+-|.-. .+.+.=|+..+-+||++ +....+.
T Consensus 5 ~~l~~c~~lL~~~---------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~ 75 (543)
T PF05536_consen 5 ASLEKCLSLLKSA---------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLS 75 (543)
T ss_pred HHHHHHHHHhccC---------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHH
Confidence 4677888877653 24677788888888898776422 24555568888899987 4577899
Q ss_pred HHHHHHHHHhhCCHHHH--HHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC
Q 016280 118 KAGEVVTTIVQNNPRSQ--QLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 195 (392)
Q Consensus 118 ~Aa~vLg~iaqNNp~~Q--~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s 195 (392)
.|..+|++.+. .|... ..++ +-||.|+.++.+..+..+...++.+|.+++ .++.+.+.|+..|+++.|.+++.+
T Consensus 76 LavsvL~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 76 LAVSVLAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh
Confidence 99999999998 45442 2333 349999999887656688899999999999 788999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHhhcCCcchHHHHhc-----CchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 196 ESVKFQRKALNLIQYLLNENASDCSVVDKL-----GFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 196 ~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-----G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.......|+.++.+++...... .+.+. .++..+...+...+...+=..+..|..+-...
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~--~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQK--SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchh--hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 6777889999999998653311 11111 34455555666555555666677777766655
No 44
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.84 E-value=2.8e-05 Score=56.70 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 016280 113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL 169 (392)
Q Consensus 113 ~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~l 169 (392)
+.+|..|+|+||++++..+...+.++ ..+++.|+.+|.+ ++..||.+|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 46899999999999999887766544 3588999999865 4669999999999975
No 45
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0022 Score=71.72 Aligned_cols=172 Identities=18% Similarity=0.137 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHc--CChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSI--GGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l--Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll 147 (392)
+...+..+|-.|.-..| -+...+... ..++.++.+|+.+++.||+.||.+||.++.+ -|.+|....+ -.++.|+
T Consensus 361 ~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e-~l~~aL~ 437 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE-RLPPALI 437 (1075)
T ss_pred CHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH-hccHHHH
Confidence 34555566666665555 222223221 2356667889999999999999999999998 6677776544 4666788
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH-HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL- 225 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~- 225 (392)
..+++..++.|+..|.-|+=+..-+++...-.=+--+-+. .+..++++....+|..++.+|...+..-. ..|+..
T Consensus 438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~---~~F~pY~ 514 (1075)
T KOG2171|consen 438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ---EKFIPYF 514 (1075)
T ss_pred HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh---hhhHhHH
Confidence 8888877788999998888888777665433223334445 55566778889999999999999986422 233332
Q ss_pred -CchHHHHHhhcCCC-hHHHHHHHH
Q 016280 226 -GFPRLMLHLASSED-PDVREAALR 248 (392)
Q Consensus 226 -G~v~~Lv~LL~~~d-~~v~E~aL~ 248 (392)
-+++.|.+.|...+ .+.|+....
T Consensus 515 d~~Mp~L~~~L~n~~~~d~r~Lrgk 539 (1075)
T KOG2171|consen 515 DRLMPLLKNFLQNADDKDLRELRGK 539 (1075)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHhh
Confidence 34566666666544 455444333
No 46
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.80 E-value=6.1e-05 Score=59.44 Aligned_cols=87 Identities=28% Similarity=0.280 Sum_probs=69.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
|+.|++.|.+++++.+|..|+++|+.+- ....++.|..++++++..+|..|+++|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 5789999867789999999999999331 1245899999999999999999999999873
Q ss_pred HhcCchHHHHHhhcCC-ChHHHHHHHHHHH
Q 016280 223 DKLGFPRLMLHLASSE-DPDVREAALRGLL 251 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~-d~~v~E~aL~aL~ 251 (392)
....++.|..++.++ +..+|+.|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234688899988875 4557899998874
No 47
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.80 E-value=9e-05 Score=61.59 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 115 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 115 IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
+|.....+||+++-+|+.+|+.+.+.|||+.+++...- +.++.+|.-|+|||-+++.+++.+++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56778899999999999999999999999999988553 35789999999999999999998887764
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.79 E-value=8.3e-05 Score=77.68 Aligned_cols=175 Identities=23% Similarity=0.276 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
++..+-.||..|..+. ..+.+..+ ++.+..+|.++++.||..|+.++..+.+.+|.. +-.. .++.|.++|
T Consensus 92 n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL 161 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL 161 (526)
T ss_dssp SHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT
T ss_pred CHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc
Confidence 4566678899998855 44555555 788889999999999999999999999988854 2222 577888887
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch--H--------
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC--S-------- 220 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~--~-------- 220 (392)
.|+++.|+..|+.++..+ +.++.....+ ...-+..|.+++...++-++.+++.++..++...+... .
T Consensus 162 -~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~ 238 (526)
T PF01602_consen 162 -SDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN 238 (526)
T ss_dssp -THSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred -cCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence 557899999999999999 4444321111 22334455555566677777777777766664333222 0
Q ss_pred ---------------HH--------HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 221 ---------------VV--------DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 221 ---------------~l--------~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+ .-..+++.|+.++.+.+.+++-.++.+|..++...+
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred HhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 01 112456777788888888888888888888888774
No 49
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.78 E-value=0.0013 Score=69.81 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=113.0
Q ss_pred hcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHH
Q 016280 86 VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA 165 (392)
Q Consensus 86 ve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~A 165 (392)
|..+++. +-...+..+++++|..++.-|+..+..+|.|++-.-...|..++..||+..|++++.+ .+.++|.+++|+
T Consensus 408 V~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~-~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 408 VSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD-PDFNSRANSLWV 484 (678)
T ss_pred HHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC-CCchHHHHHHHH
Confidence 3333444 6677889999999988999999999999999999877788999999999999998665 688999999999
Q ss_pred HHHhhcCCccc-HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 166 ISSLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 166 LS~lvR~~~~~-~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
|-.+.-+...- +.++...=+...|..+...++..||+.+..++++|+-+..+..+.+.+.
T Consensus 485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 99999886543 3344455567778888899999999999999999997666666666554
No 50
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.77 E-value=0.00091 Score=68.02 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=113.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc----CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc
Q 016280 108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 183 (392)
Q Consensus 108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~----g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~ 183 (392)
....+..++.-+..|++..+. ||.-+..|.+. +++..|.+...+ ++.+|......||+|+|..+..++.+|...
T Consensus 51 i~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l 128 (604)
T KOG4500|consen 51 IMTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNL 128 (604)
T ss_pred eeeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence 344567889999999999984 56666666665 456666666555 478999999999999999999999999999
Q ss_pred ChHHHHHHhhcC---CC----HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHH
Q 016280 184 NGYAALRDALGS---ES----VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVREAALRGLLEL 253 (392)
Q Consensus 184 gGl~~L~~lL~s---~d----~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E~aL~aL~~L 253 (392)
||-.+++++|++ .+ .++-.-++.+|++-..++.+.+..+.++|+++.|+.++. -.+....|..+-...++
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nl 207 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNL 207 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccH
Confidence 998888888875 22 577788888899888888888999999999999988876 34566777777544443
No 51
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.68 E-value=0.001 Score=67.71 Aligned_cols=183 Identities=19% Similarity=0.130 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHHcC-
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEAN- 141 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-~-------~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g- 141 (392)
.++-.++.|+.|....|+-.-.-.|.+.|.++.++.+++. . .-.+-..++..+.-+....+..|. +...+
T Consensus 237 ~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~-L~~~p~ 315 (604)
T KOG4500|consen 237 REDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQK-LHADPQ 315 (604)
T ss_pred ccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHH-HhcCcH
Confidence 3455678899999999988888899999999999999875 2 123455677777777777676666 44444
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCC
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENA 216 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~ 216 (392)
.+..++..+.++ |......+..||+|++|... ....|++.+-+..|+.+|.. ++.+++-.++.+|++|.- ..
T Consensus 316 ~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv 392 (604)
T KOG4500|consen 316 FLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PV 392 (604)
T ss_pred HHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cC
Confidence 678888888885 67899999999999999865 55678899999999999864 468999999999999986 46
Q ss_pred cchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 217 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 217 ~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.++..+...|+++.++..++...+.++-+-+.+|.-+...-
T Consensus 393 ~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q 433 (604)
T KOG4500|consen 393 SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ 433 (604)
T ss_pred CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch
Confidence 77889999999999999999888888888777775544433
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.65 E-value=0.0015 Score=67.27 Aligned_cols=182 Identities=17% Similarity=0.147 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
...++..|..++..-+....|.+.+|+++|+.+|+.. ...++-.++-||=-++=+.+ ..+...+.+.++.|+.++..
T Consensus 161 ~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 161 VQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHh
Confidence 4456788888888888888999999999999999763 45666666666655554433 54555567888888888876
Q ss_pred CCCHHHHHHHHHHHHHhhcC------------------------------------------------------------
Q 016280 153 DPDVTVRTKALGAISSLIRH------------------------------------------------------------ 172 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~------------------------------------------------------------ 172 (392)
...+.|-+-++.++-|++..
T Consensus 240 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y 319 (429)
T cd00256 240 STKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEY 319 (429)
T ss_pred hhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 65556666566555555320
Q ss_pred -----------Cc---------ccHHHHHHcC--hHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 173 -----------NK---------PGIEAFRLAN--GYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 173 -----------~~---------~~~~~f~~~g--Gl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
.| .+...|.+.+ -+..|+.+|. |.|+.+..-||+=|..+++..|..+..+.+.|+=.
T Consensus 320 ~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~ 399 (429)
T cd00256 320 KSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQ 399 (429)
T ss_pred HHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHH
Confidence 11 2233443332 2345677774 56788888899999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+++|+.++|++|+..||.++..|..++
T Consensus 400 ~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 400 RVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999886554
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=97.64 E-value=0.01 Score=65.48 Aligned_cols=164 Identities=12% Similarity=0.162 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhh-cCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280 73 QDIEDMLDELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 73 e~~~~aL~~L~~lv-e~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
.++..++..+..+. ...|... +++-+++++.+++.++|....-.+.+.+..+|.. .++ ++..|.+=+.
T Consensus 47 ~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--alL---aINtl~KDl~ 115 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--ALL---AVNTFLQDTT 115 (746)
T ss_pred HHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HHH---HHHHHHHHcC
Confidence 44445555443333 3334433 4677889999999999999999999999888864 233 2445555444
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
+ +++.+|.-|+.++|++. . +. + ..-.+..+.+++.+.++-||++|+.++..|...+++ .+.+.|+++.|
T Consensus 116 d-~Np~IRaLALRtLs~Ir-~-~~----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L 184 (746)
T PTZ00429 116 N-SSPVVRALAVRTMMCIR-V-SS----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDL 184 (746)
T ss_pred C-CCHHHHHHHHHHHHcCC-c-HH----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHH
Confidence 3 68999999999999964 2 11 1 122566788999999999999999999999876554 55677999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 232 LHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 232 v~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
..+|.+.++.|.-.|+.+|..+...++
T Consensus 185 ~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 185 VELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999987765
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.59 E-value=0.00071 Score=66.88 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=115.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh--
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF-- 150 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s----~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL-- 150 (392)
.++..|..++..-+....-...+.++.++.+|.+ ++.+++..|+.+++++.. ++.++..|.+.|+++.|+.++
T Consensus 124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRK 202 (312)
T ss_dssp HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHh
Confidence 4455555555544333332223456777777654 456788999999999995 577999999999999999999
Q ss_pred ----CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCc-chHHHHh
Q 016280 151 ----ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENAS-DCSVVDK 224 (392)
Q Consensus 151 ----~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~ 224 (392)
.+.....++..+++++-.+.-+ +.....+...+-++.|..+++. ..+|+-+-++..+.+|+...+. ....++.
T Consensus 203 ~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~ 281 (312)
T PF03224_consen 203 QATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL 281 (312)
T ss_dssp --------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred hcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4445678999999999999865 4566778788899999999875 5699999999999999976554 5667777
Q ss_pred cCchHHHHHhhcC--CChHHHH
Q 016280 225 LGFPRLMLHLASS--EDPDVRE 244 (392)
Q Consensus 225 ~G~v~~Lv~LL~~--~d~~v~E 244 (392)
.|+++.+-.|... .|+++.+
T Consensus 282 ~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 282 CGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp H-HHHHHHHHHSS--SSHHHHH
T ss_pred ccHHHHHHHHhcCCCCCHHHHH
Confidence 7877766666542 3555554
No 55
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.59 E-value=0.00065 Score=69.62 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=128.1
Q ss_pred HcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 97 SIGGLAPLLGYLKNSH--ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 97 ~lGgl~~Ll~lL~s~~--~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
.-||+..|++++.+++ ..+|..|+.+|-.|.. ...++.|...| +..++.+......++.++..+.-|.++-.|..
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 3599999999999876 4579999999987754 23456666665 66666665544567889999999999999998
Q ss_pred ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 175 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
.....++..||+..++......++.+.+.++.+|.+++-+ .-..+..+++..+.+.|..|..+.|.-+|-+|.-+++.|
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 8888889999999999888888999999999999988754 334466788888888898888888888999998888888
Q ss_pred HcCCC
Q 016280 254 AREKA 258 (392)
Q Consensus 254 ~~~~~ 258 (392)
++...
T Consensus 335 at~KE 339 (832)
T KOG3678|consen 335 ATNKE 339 (832)
T ss_pred hhhhh
Confidence 77654
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=97.48 E-value=0.01 Score=63.31 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=122.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH---HHHHHHcCCHHHHHHhhCCC------CCHHHHHHHHHHHHHhhc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS---QQLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIR 171 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~---Q~~vl~~g~l~~Ll~LL~s~------~~~~vr~kAl~ALS~lvR 171 (392)
+.-++.+|++.+.+=|-.+.-++..++.+.+.. ++.|.+.=|.+=|-+||.+. +....+.=|+.-|+++|+
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 566788999988888999999999999987743 33577776665555666652 235688888999999998
Q ss_pred CCcccHHHHHHcChHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280 172 HNKPGIEAFRLANGYAALRDALGSESV-KFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 250 (392)
Q Consensus 172 ~~~~~~~~f~~~gGl~~L~~lL~s~d~-kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL 250 (392)
. +.....---.+-+|.|+.++.+.+. .+...|...|..++ ..+..++.+.+.|.++.|++.+.+ +...+|.|+.+|
T Consensus 87 ~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 D-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred C-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 4 3222222235679999999987666 99999999999999 578889999999999999999888 777899999999
Q ss_pred HHHHcCCC
Q 016280 251 LELAREKA 258 (392)
Q Consensus 251 ~~L~~~~~ 258 (392)
.+++....
T Consensus 164 ~~Lls~~~ 171 (543)
T PF05536_consen 164 LNLLSRLG 171 (543)
T ss_pred HHHHHhcc
Confidence 99887655
No 57
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.48 E-value=0.0008 Score=76.39 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=137.3
Q ss_pred HHHHHHHHhhcCCC------ChHHHHHcCChHHHHHhh-cCCC-HHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHH
Q 016280 77 DMLDELQEHVESID------MANDLHSIGGLAPLLGYL-KNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLL 147 (392)
Q Consensus 77 ~aL~~L~~lve~iD------nA~d~~~lGgl~~Ll~lL-~s~~-~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll 147 (392)
++++.+.-++.|+- ....|-..|-+..|..+- .... ..++ ....+|=|++.+..+.+..|-.- |+|.-|+
T Consensus 409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLK-avLSALWNLSAHcteNKA~iCaVDGALaFLV 487 (2195)
T KOG2122|consen 409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLK-AVLSALWNLSAHCTENKAEICAVDGALAFLV 487 (2195)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHH-HHHHHHhhhhhcccccchhhhcccchHHHHH
Confidence 44555555666553 355677788888888754 3333 3343 33444444555544445555544 8899999
Q ss_pred HhhCCCC--C-HHHHHHH---HHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 148 SNFASDP--D-VTVRTKA---LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 148 ~LL~s~~--~-~~vr~kA---l~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
.+|.-+. + ..+...| |.-+|+++-.+.+..+...+.+-+..|++.|+|....+-..+|..|-+|...++.+++.
T Consensus 488 g~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~ 567 (2195)
T KOG2122|consen 488 GTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQM 567 (2195)
T ss_pred hhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHH
Confidence 9987541 1 2233333 66677888888888888889999999999999999999999999999999999999999
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.+.|.|+.|-+|+++.+..+-+-++.+|.||...-+
T Consensus 568 LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 568 LWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999988775
No 58
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.42 E-value=0.00027 Score=47.69 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=35.9
Q ss_pred CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 90 DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ 128 (392)
Q Consensus 90 DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq 128 (392)
+++..+.+.||+++|+.+|.+++.+++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
No 59
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.42 E-value=0.0027 Score=67.21 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=98.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
...++...+ .+...+..|+..|......-|..|+.. |..++.|.. |.|..||+.|+-.|..+|++++.....
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~k- 96 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSK- 96 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhH-
Confidence 344455544 468899999999999999999999864 557888866 468999999999999999998765555
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
-..+|+++|++++..-..-+-..|..|+..++...- .|++.++..- .+++..+||+++..|..-...-...
T Consensus 97 ----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL----~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 97 ----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL----TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp ----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred ----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHH
Confidence 467899999999877777777777777765433210 1222222211 2567889999999887655544322
Q ss_pred hhhhhhhhHHHHHHHHHHHHhh
Q 016280 261 SAIKLAEDNEKLKQLLGERIKG 282 (392)
Q Consensus 261 ~~~~~~~~~~~L~~~L~~~~~~ 282 (392)
.. .|..+..+.+...++.
T Consensus 168 ~~----~p~~E~e~~i~~~ikk 185 (556)
T PF05918_consen 168 LL----TPQKEMEEFIVDEIKK 185 (556)
T ss_dssp TS-------HHHHHHHHHHHHH
T ss_pred Hh----hchHHHHHHHHHHHHH
Confidence 21 2333445555555443
No 60
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.37 E-value=0.0077 Score=61.20 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
+--+..+|..++.--...-.|+...|+..++..|.+. +-.++-+.+.|+=-+.-| |...+.+...+.++.|..++.+
T Consensus 174 ~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~ 252 (442)
T KOG2759|consen 174 IQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKE 252 (442)
T ss_pred HHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHH
Confidence 3345556666666666777888899999999887443 455666666666666654 4444656666788888888776
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc----------------------------------------------------------
Q 016280 153 DPDVTVRTKALGAISSLIRHNK---------------------------------------------------------- 174 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~~~---------------------------------------------------------- 174 (392)
...+.|-+-.+..+.|++-..+
T Consensus 253 ~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY 332 (442)
T KOG2759|consen 253 STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEY 332 (442)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 5545555555555555432110
Q ss_pred ----------------------ccHHHHHH--cChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 175 ----------------------PGIEAFRL--ANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 175 ----------------------~~~~~f~~--~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
.+...|.+ ..-+.+|+.+|++. |+.+.--||+=|...++..|..+..+.+.|+=+
T Consensus 333 ~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe 412 (442)
T KOG2759|consen 333 KSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKE 412 (442)
T ss_pred HHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHH
Confidence 11222222 22456677777754 578888899999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.++.|+.++|++|+-+|+.|+..|..++
T Consensus 413 ~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 413 RVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876554
No 61
>PTZ00429 beta-adaptin; Provisional
Probab=97.34 E-value=0.043 Score=60.59 Aligned_cols=145 Identities=16% Similarity=0.092 Sum_probs=103.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
.++.++|.+.++-||..|+.++..+-+.+|.. +.+.|.++.|..+|. |.++.|...|+.+|..+....+... -.
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pel---v~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l--~l 216 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL---FYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKI--ES 216 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc---ccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhh--HH
Confidence 44556788899999999999999999988843 446677888888765 5788999999999999986654322 12
Q ss_pred HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
..+-+.-|...+..-++-.|...+.+|... .+.+... ...++..+...|++.+..|.-.|++++.++....
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y---~P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQ---RPSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhc---CCCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence 344455566666666777777766666442 2332222 1356777888888888888888888888887653
No 62
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.33 E-value=0.00068 Score=57.84 Aligned_cols=102 Identities=17% Similarity=0.348 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcC
Q 016280 9 DGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVES 88 (392)
Q Consensus 9 ~gLLkwsi~~sd~~~~~~~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~ 88 (392)
.|.|.||--|++ +.=|-++|.+= ..+..+.+|..+.++.... ++..+..|..+|.++|..
T Consensus 15 sg~L~WSP~H~s-----------e~FW~ENa~kf-~~~~~~llk~L~~lL~~s~--------d~~~laVac~Dig~~vr~ 74 (119)
T PF11698_consen 15 SGHLEWSPVHKS-----------EKFWRENADKF-EENNFELLKKLIKLLDKSD--------DPTTLAVACHDIGEFVRH 74 (119)
T ss_dssp HT-----GGGG------------HHHHHHHSGGG-SSGGGHHHHHHHHHH-SHH--------HHHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCCCC-----------ccHHHHHHHHH-HHcccHHHHHHHHHHccCC--------CcceeehhhcchHHHHHH
Confidence 477889888875 23566666554 4556788888888875432 345667899999999999
Q ss_pred CCChHHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC
Q 016280 89 IDMANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN 130 (392)
Q Consensus 89 iDnA~d~~-~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN 130 (392)
.++.+.++ ++|+=..++.|+.+++++||..|..++..+..+|
T Consensus 75 ~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 75 YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp -GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999888 5677777889999999999999999999887654
No 63
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.30 E-value=0.039 Score=56.19 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=114.7
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC-HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANG-LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~-l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
-.+.+.+++|...+.-+...++++|+.++++.+..-. -.+... ...|-.++.+..+.....-|+.+|..++|. ++-+
T Consensus 114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR 191 (442)
T KOG2759|consen 114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYR 191 (442)
T ss_pred cchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchh
Confidence 3489999999999999999999999999986542211 001111 122333444444556778889999999997 4578
Q ss_pred HHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHHH
Q 016280 178 EAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLELA 254 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~ 254 (392)
..|+.++|+..++..+.|. +..+|=..++++--|+- ++...+.+...+.++.|..++++ .-..|..-++.++.|+.
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll 270 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL 270 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999543 57788888888876664 45556777788999999999985 34556666777778887
Q ss_pred cCCC
Q 016280 255 REKA 258 (392)
Q Consensus 255 ~~~~ 258 (392)
...+
T Consensus 271 ~k~~ 274 (442)
T KOG2759|consen 271 DKGP 274 (442)
T ss_pred ccCc
Confidence 7774
No 64
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.28 E-value=0.0088 Score=60.81 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
...|++.||.-+..+++-.+..+. ...|.+..++.+.++++..+|..|...|..++--||.. +.++||+..|++.+
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l 156 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRAL 156 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHH
Confidence 457889999999888886544443 47788899999999999999999999999999999954 88999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-------CH--HHHHHHHHHHHHHhhcCCcchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-------SV--KFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-------d~--kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
.. ...++....+.++=.+. ++|...+.+...--++.+..-+.+. +. ..-..+..++..++..=+.-.-.
T Consensus 157 ~d-~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l 234 (371)
T PF14664_consen 157 ID-GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL 234 (371)
T ss_pred Hh-ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence 76 34456677777777777 4555555554434555555444322 22 34556778888888764443221
Q ss_pred HH-hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 222 VD-KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 222 l~-~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
-. +...++.|+..|..+.+.+|+..+..+..+-.-.+
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 11 22578999999999999999999999999866444
No 65
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0025 Score=70.64 Aligned_cols=170 Identities=19% Similarity=0.129 Sum_probs=137.6
Q ss_pred CCChHHHHHcCChHHHHHhhcC-C--CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHH
Q 016280 89 IDMANDLHSIGGLAPLLGYLKN-S--HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGA 165 (392)
Q Consensus 89 iDnA~d~~~lGgl~~Ll~lL~s-~--~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~A 165 (392)
..+.-|++|-+|-..++..|.. + +++-|..|+.+|+.++.|-+.-|+..++.+.+..-+..|..++.+-+|.=++-+
T Consensus 544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4567899999999999998876 2 578999999999999999999999999999999888887775556788888888
Q ss_pred HHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----CcchHHH------------HhcCch-
Q 016280 166 ISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----ASDCSVV------------DKLGFP- 228 (392)
Q Consensus 166 LS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~----~~~~~~l------------~~~G~v- 228 (392)
|+-|=.++..++-.-...++...|..+|..+.++||..|+|+|..++... .+....+ ++.-+.
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~ 703 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIK 703 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHh
Confidence 99998899988888888999999999999999999999999999999752 2222111 121222
Q ss_pred --HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 229 --RLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 229 --~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
-.++.+++...+-++..+.-+|..++.+..
T Consensus 704 ~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 704 GLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 245666777788888888888888877665
No 66
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00097 Score=69.34 Aligned_cols=138 Identities=9% Similarity=-0.007 Sum_probs=108.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCH
Q 016280 119 AGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV 198 (392)
Q Consensus 119 Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~ 198 (392)
++.+|-.+...-...+--+..+....+|+++|.+ ++.-+.--++.+|.+.+-.+.+-+..|+..|-+.+|+.++.++|.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444455554444444445556677889999876 566677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 199 KFQRKALNLIQYLLNENASDC-SVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 199 kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+|.+..|.++++.-+..... =.+...-.+..++.+..+++..||+.++..|.|+.-+.
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 999999999999986544332 13344445788999999999999999999999987643
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.01 Score=64.23 Aligned_cols=185 Identities=19% Similarity=0.231 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCC--------HH-------
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNN--------PR------- 132 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s--~~~~IR~~Aa~vLg~iaqNN--------p~------- 132 (392)
.-++++..|+.-|.-+... =+.-+-.-|+++|+..|+. .++++-..|...+..+..+. +.
T Consensus 35 TL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~ 111 (970)
T KOG0946|consen 35 TLLEDRRDAVRGLKAFSRK---YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL 111 (970)
T ss_pred cchhhHHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence 3457777776666554331 1333456789999999976 58999999999998888754 22
Q ss_pred -HHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-HHHHH-cChHHHHHHhhcCCCHHHHHHHHHHH
Q 016280 133 -SQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRL-ANGYAALRDALGSESVKFQRKALNLI 208 (392)
Q Consensus 133 -~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lL 208 (392)
+.+.+++. +-|..|+..+.. .|-.||..++--|++++++.+.-. ..+.. .-|+.-|+.+|.....-+|-.|..+|
T Consensus 112 ~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL 190 (970)
T KOG0946|consen 112 WIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL 190 (970)
T ss_pred HHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence 23444443 667777777665 478999999999999999877654 44443 46999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHhcCchHHHHHhhcCC---C-hHHHHHHHHHHHHHHcCCC
Q 016280 209 QYLLNENASDCSVVDKLGFPRLMLHLASSE---D-PDVREAALRGLLELAREKA 258 (392)
Q Consensus 209 s~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~---d-~~v~E~aL~aL~~L~~~~~ 258 (392)
..|+.+++.....+.=.++...|..++..+ | --|.+-|+..|.+|.+++.
T Consensus 191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 999998777776666678899999998743 2 2478999999999988765
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.22 E-value=0.0037 Score=54.66 Aligned_cols=128 Identities=12% Similarity=0.126 Sum_probs=100.0
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 102 APLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 102 ~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
..|+. +-+..+.+-+++..-=|++.|- .|..-..+.+.+++..++..|.. ++..+...++.+|+|+|-. +.+.+.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 34443 3344677777777767777775 47777888899999999998776 5889999999999999975 4567777
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML 232 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv 232 (392)
+.++|++.++.++.|+...+--.|+.++.+|+..+...++.+..-.+++.+.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 8999999999999999988888999999999987777777666555444443
No 69
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.21 E-value=0.0063 Score=65.54 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=107.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~-vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
++..|++..+.+|.+|+.+++.++---..|++. .+. .|.+ |..-|.. ..++|.-..+.||.+++.-..- .+.+-
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylge-eypEvLgsILgAikaI~nvigm-~km~p 879 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGE-EYPEVLGSILGAIKAIVNVIGM-TKMTP 879 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCc-ccHHHHHHHHHHHHHHHHhccc-cccCC
Confidence 345788999999999999999998655555552 222 2332 5566665 4677777777777776643210 00110
Q ss_pred -HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 182 -LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 182 -~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
..+-+|-|..+|++...|++..+.-++..++...++....=.=+-++=-|+++|++-...+|..|..+++.|++--
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 3456788999999999999999999999999887775433233345556888888888999999999999988754
No 70
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.16 E-value=0.00071 Score=49.14 Aligned_cols=55 Identities=20% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016280 156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL 211 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L 211 (392)
+.+|..|+++|++++.+.+..... .....++.|..+|.+++..||..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 368999999999998877665555 4677999999999999999999999999865
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.02 Score=61.87 Aligned_cols=173 Identities=15% Similarity=0.150 Sum_probs=115.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-HHHHHcC
Q 016280 106 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRLAN 184 (392)
Q Consensus 106 ~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~~g 184 (392)
.-+++++=.-|..|+.+.|.+-..-...+-.-+..+++|.++.++. |++..++..+.|+++.++.+.+... .......
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 3667888889999999999998765555555666789999999866 7888999999999999998876432 2223344
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhcCchHHH-HHhhcC------CChHHHHHHHHHHHH
Q 016280 185 GYAALRDALGSESVKFQRKALNLIQYLLNENASD-----CSVVDKLGFPRLM-LHLASS------EDPDVREAALRGLLE 252 (392)
Q Consensus 185 Gl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-----~~~l~~~G~v~~L-v~LL~~------~d~~v~E~aL~aL~~ 252 (392)
-+++++.-|. +.+++-.++||++.+|+..-.+. ...... .+.+.+ -.|++. .+..+|..|-.||..
T Consensus 450 ~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE 527 (859)
T KOG1241|consen 450 KLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME 527 (859)
T ss_pred HHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 5555555554 46899999999999998542221 001111 122222 234432 346799999999999
Q ss_pred HHcCCChhhhhhhhhhHHHHHHHHHHHHh
Q 016280 253 LAREKADGSAIKLAEDNEKLKQLLGERIK 281 (392)
Q Consensus 253 L~~~~~~~~~~~~~~~~~~L~~~L~~~~~ 281 (392)
|++.+++.+.....+........|.+-++
T Consensus 528 lIk~st~~vy~~v~~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 528 LIKNSTDDVYPMVQKLTLVILEKLDQTIS 556 (859)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999865333223333333444444444
No 72
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.14 E-value=0.0016 Score=54.23 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 158 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 158 vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
+|...+..|++++-.++..+..+...||++.+..+..- .++-+++.|.|+|++|+.+++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 46778889999999999999999999999999988653 569999999999999999998888766654
No 73
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.05 E-value=0.0095 Score=53.42 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred ChHHHHHcCChHHHHHhhcCCC------HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC-CHHHHHHHH
Q 016280 91 MANDLHSIGGLAPLLGYLKNSH------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-DVTVRTKAL 163 (392)
Q Consensus 91 nA~d~~~lGgl~~Ll~lL~s~~------~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~-~~~vr~kAl 163 (392)
.|..|++.||+..|+..++++. .++-..+..+.-.+....- +....+....+.+.+..+.... +..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999998754 4777778888777777653 3334556666778888776544 678999999
Q ss_pred HHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 164 ~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
.-|=+++-+.+.....+...=-++-|+..|+..+..++.+|..++-.|....++.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999887766777767778889999999999999999999999998765554
No 74
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.05 E-value=0.0016 Score=55.64 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=62.6
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
.+..|+++|.+..|+.+..-|++-|+.+||++|.+...+-..||-..++.+|.++|+.||..|+.++..|..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4788999997656888889999999999999999888877889999999999999999999999999988753
No 75
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.03 E-value=0.022 Score=59.35 Aligned_cols=249 Identities=15% Similarity=0.146 Sum_probs=152.5
Q ss_pred HHHHHHhhcCCCChHHHHHcCChHHHHHhh----------cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 79 LDELQEHVESIDMANDLHSIGGLAPLLGYL----------KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 79 L~~L~~lve~iDnA~d~~~lGgl~~Ll~lL----------~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
|+.|.-|-.+-.++..+..-.|+..|+.+- ..++..+...|..||+|+.-++|..|+.+.+.|+...++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 455666666666777777766677776554 3468899999999999999999999999999999999999
Q ss_pred hhCCCC----CH---HHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-----------------CCHHHHHHH
Q 016280 149 NFASDP----DV---TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-----------------ESVKFQRKA 204 (392)
Q Consensus 149 LL~s~~----~~---~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-----------------~d~kl~~kA 204 (392)
.|.... +. .+-.+.+|-+.++... ...+.+-+.+|+..|...|.. .+..+...+
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~--~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPD--DRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChh--HHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 988651 22 2444555544443322 122334456888887766542 123445667
Q ss_pred HHHHHHHhhcCCcchHHHHhcCchHHHHHhhc---------CCChHHHHHHHHHHHHHHcCCChh------------hhh
Q 016280 205 LNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---------SEDPDVREAALRGLLELAREKADG------------SAI 263 (392)
Q Consensus 205 ~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~---------~~d~~v~E~aL~aL~~L~~~~~~~------------~~~ 263 (392)
+-++-++....+.... -.....++.++.++. .+-...+-++.++|.++--.+... ...
T Consensus 160 LKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 7777777755444332 122234444444432 223567888889998872211110 000
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCcccccc-ceeeccCCCC--CCcccccc
Q 016280 264 KLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDK-GLLVLPGEDA--PPPDVASK 336 (392)
Q Consensus 264 ~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 336 (392)
.--.....|...|+.++....... ..+.+.=+=.++..++.....+|+- -.++||.+.. .||+.-..
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~------l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~t 308 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALK------LDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDT 308 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCccc------chhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcc
Confidence 002334667777888777654221 1222222445566666666888888 8889998864 77776443
No 76
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.97 E-value=0.2 Score=49.75 Aligned_cols=181 Identities=20% Similarity=0.119 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHH---cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHHcCCHHH
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHS---IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEANGLEP 145 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~---lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN---Np~~Q~~vl~~g~l~~ 145 (392)
..-++.+|..|..++...-. -+|+. .-.+..+++.++.+..+-+..|+.+++-++=. ..... .+++ ...|.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~-ei~~-~~~~~ 133 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE-EIFE-ELKPV 133 (309)
T ss_pred HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH-HHHH-HHHHH
Confidence 45677888888877754433 34442 23466777888887777788888988887532 23343 3554 35667
Q ss_pred HHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHH--HHHhhcC----------CCHHHHHHHHHHHHHH
Q 016280 146 LLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAA--LRDALGS----------ESVKFQRKALNLIQYL 211 (392)
Q Consensus 146 Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~--L~~lL~s----------~d~kl~~kA~~lLs~L 211 (392)
|.+.+... ....+|..++.||+-++.-......... ....+.. ....+++ ++..+...|+...+-|
T Consensus 134 L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 134 LKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 77766543 3457788888888865432111112211 1122221 1111221 2357888888888888
Q ss_pred hhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 212 LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 212 ~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
++.-+...-.-.-...++.|+.+|.++|.+||-.|-.+|.-|..
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 86544421111112468999999999999999888877765533
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.87 E-value=0.011 Score=60.77 Aligned_cols=118 Identities=21% Similarity=0.147 Sum_probs=85.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
+..|+..|.++++.+|..++..||.+- .....+.|+.+|.+ .++.+|..++.+++. |+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~-~~p~vR~aal~al~~--r~-------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAA-SEPPGRAIGLAALGA--HR-------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcC-CChHHHHHHHHHHHh--hc--------
Confidence 778888888888888888888888542 12345667777755 577888877766665 11
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
..-++.|..+|++.+..|+..|+.+|.+|-.. ..++.|...+.+.++.||..|+.++..+
T Consensus 146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 --HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12345678888888999999999998887542 3455577778888899998888887665
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.03 Score=55.61 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=109.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH--HHHH--HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP--RSQQ--LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 176 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp--~~Q~--~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~ 176 (392)
.+.|-.-|.+++..|+..||.-||.+..|.. .+-+ .|++.+.++.++..+.. .+.+|...|.-.|+.+.+ ++.+
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh-cHHH
Confidence 4556667889999999999999999999876 2222 24577888888888776 478999999999999997 4666
Q ss_pred HHHHHHcChHHHH--HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHH
Q 016280 177 IEAFRLANGYAAL--RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAALRGLLEL 253 (392)
Q Consensus 177 ~~~f~~~gGl~~L--~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L 253 (392)
...+...+-+..+ +.+-...+.-.|.+...+|-.+.+-.+.......+.|++..|..-|+. .|.-++-.++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 6666665544433 333333456677788888888887777777777778888887776664 5555556665555555
Q ss_pred H
Q 016280 254 A 254 (392)
Q Consensus 254 ~ 254 (392)
+
T Consensus 242 a 242 (524)
T KOG4413|consen 242 A 242 (524)
T ss_pred H
Confidence 3
No 79
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.84 E-value=0.026 Score=54.46 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280 156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L 234 (392)
......|+..|-.+|--||+.+..|....++.+|+++|. +....++..++.+|.+++-+++.+...|.+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345677888888888889999999999999999999995 4679999999999999999999999999999999999999
Q ss_pred hcC--CChHHHHHHHHHHHHHHcCCC
Q 016280 235 ASS--EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 235 L~~--~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+++ .+.+++-+++..|.-......
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~E~ 210 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMPET 210 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcccC
Confidence 985 467899999988887666554
No 80
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.79 E-value=0.003 Score=42.40 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=34.3
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
....++..||++.|+.+|++.+.+++..|+++|++|+
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667889999999999999999999999999999986
No 81
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.72 E-value=0.044 Score=60.03 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=113.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
++-+++...+.+.++|...---+-..++.+| +++++. ++.+.+=+. ++++.+|..|+.++|.+ |.. ++
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lLa---vNti~kDl~-d~N~~iR~~AlR~ls~l-~~~-----el 124 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALLA---VNTIQKDLQ-DPNEEIRGFALRTLSLL-RVK-----EL 124 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHHH---HHHHHhhcc-CCCHHHHHHHHHHHHhc-ChH-----HH
Confidence 5667787778899999999999999999999 445543 444444444 47899999999999986 332 22
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
....++.+.+++.+++..||+.|+.++..+-+- +...+.+.|.+..+..++.+.++.+...|+.+|..+...
T Consensus 125 -~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 -LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 334688999999999999999999999999864 455788899999999999999999999999999887665
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.58 E-value=0.024 Score=49.71 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=100.8
Q ss_pred CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280 141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS 220 (392)
Q Consensus 141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~ 220 (392)
+.+..|+.-+...++.+.+...+--|+|.+. .|.+.......+.+.+.+..|...+..+..-+...|.++|- ++.+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence 4578889888888889999999999999885 47788889999999999999999999999999999999996 477788
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+.+.+.++.++..+.++...+...++.++.-|.-..-
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999888888888888877766554
No 83
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.57 E-value=0.023 Score=56.21 Aligned_cols=67 Identities=30% Similarity=0.344 Sum_probs=52.3
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
...++.+...+.+.+..+|..|+.+|..+..++ ..+++.+...+.+++..++..++.+|+.+-....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~ 245 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDEEA 245 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchh
Confidence 346777888888888899999999998887653 3456778888889999999998888877644443
No 84
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.032 Score=62.27 Aligned_cols=140 Identities=21% Similarity=0.227 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHH----cCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHH
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHS----IGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE 144 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~----lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~ 144 (392)
+.+..+.+|..|++++. +.|.|..|-. +|-++.++.+|.+ .++.|+..|..+|..+..|-| |-+.+...|.+.
T Consensus 1738 s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1738 TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLT 1816 (2235)
T ss_pred hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHH
Confidence 44567889999999988 5577877653 7889999998865 889999999999998887765 667788999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-cCCCHHHHHHHHHHHHHHhhc
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-~s~d~kl~~kA~~lLs~L~~~ 214 (392)
.|+.+|-+. ++.|..++..|-++..+ +....+-...||+..|..++ .+.....|..|+.++..|..+
T Consensus 1817 ~LL~lLHS~--PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1817 TLLTLLHSQ--PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHHhcC--hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999998874 56777776666666544 34455556899998888776 456789999999999999864
No 85
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.041 Score=61.00 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-hH--HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDM-AN--DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn-A~--d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
.+-.+++||..+..+++-+.- +. +....=.+..+...++++.--+|++|||+++..+.-+=+.+..+. .++....
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~ 508 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTH 508 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHH
Confidence 445677777777777754421 11 222222345566777888889999999999999942212222222 2455566
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
+.|.++.+.-||+.|+.||.+++++++.+..++
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 677766778899999999999999988664444
No 86
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.02 Score=59.21 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=96.3
Q ss_pred CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHH
Q 016280 88 SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAIS 167 (392)
Q Consensus 88 ~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS 167 (392)
-.+|.+++..+|.++-|+++..+.++++|.....++=+++-+.- .+...+..|.+|.|..++.+++...+..+.+|-+|
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 44899999999999999999999999999999999999986543 55667889999999999999887788899999888
Q ss_pred HhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhc
Q 016280 168 SLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 168 ~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~ 214 (392)
+= ......|.-...++.+...+-+ .+.++-.....+.-+|+.+
T Consensus 413 ~d----D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 413 CD----DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred cC----cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 72 3455667777788887766543 4566655555555566643
No 87
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.43 E-value=0.065 Score=48.34 Aligned_cols=109 Identities=22% Similarity=0.272 Sum_probs=80.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc-HHHHHHcChHHHHHHhhcC---------CCHHHHHHHHHHHHHHh
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGS---------ESVKFQRKALNLIQYLL 212 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~-~~~f~~~gGl~~L~~lL~s---------~d~kl~~kA~~lLs~L~ 212 (392)
...++..+.+.+. ..+.+..|.-.+|..+.. ...|+..||+..|..+|.. .+..+...++..|..|+
T Consensus 68 p~~~i~~L~~~~~---~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRPS---TSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT-----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCc---cHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4457777766432 228888888888987654 6899999999999998874 24578888999999998
Q ss_pred hcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 213 NENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 213 ~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
.........+...+++..++..|.+++..++..|+..|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 654333334445689999999999999999999999998775
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.41 E-value=0.015 Score=61.55 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=104.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
..++.+|+|..+.+|.+|+...|.++. ++-+.. .+.+.|.+ |..-|.. ..+++.-..+.||.|+..-+....-
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~-~l~klg~i--LyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK-ELAKLGNI--LYENLGE-DYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH-HHHHHhHH--HHHhcCc-ccHHHHHHHHHHHHHHhhhhccccc
Confidence 344678899999999999999998874 222221 12233333 4555555 3667777666666666533211100
Q ss_pred HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+==..|-+|.|..+|.++..|+......++.-++...++....=.=+-++=-|+.+|++-+..+|..|..+++.|++--
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 0013577889999999999999999999999999887775332222345556788888989999999999999888754
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.38 E-value=0.16 Score=52.31 Aligned_cols=159 Identities=20% Similarity=0.101 Sum_probs=105.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.+.|+.+|.+.++.+|..+..+++.. .....+.|+.+|. +.+..|+..|+.+|+.+-+.
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r------------~~~~~~~L~~~L~-d~d~~Vra~A~raLG~l~~~-------- 177 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAH------------RHDPGPALEAALT-HEDALVRAAALRALGELPRR-------- 177 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhh------------ccChHHHHHHHhc-CCCHHHHHHHHHHHHhhccc--------
Confidence 57788999999999998888777761 1234567888876 57899999999999987543
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-------------CCcch---HHHHhc----CchHHHHHhhcCCCh
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNE-------------NASDC---SVVDKL----GFPRLMLHLASSEDP 240 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-------------~~~~~---~~l~~~----G~v~~Lv~LL~~~d~ 240 (392)
..++.|..++.+.++.||.-|++.+..+-.. +.... ..+... ..++.|..+++.+.
T Consensus 178 ---~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~- 253 (410)
T TIGR02270 178 ---LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA- 253 (410)
T ss_pred ---cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh-
Confidence 2444577789999999999999888665210 00000 111111 34566666766644
Q ss_pred HHHHHHHHHHHHHHcCCCh-hhhhhhhhhHHHHHHHHHHHHhhhcCCC
Q 016280 241 DVREAALRGLLELAREKAD-GSAIKLAEDNEKLKQLLGERIKGISLMS 287 (392)
Q Consensus 241 ~v~E~aL~aL~~L~~~~~~-~~~~~~~~~~~~L~~~L~~~~~~i~~~~ 287 (392)
+++.++.+|+.+-...-- .....+.+ ..++..-.+-++.|.+++
T Consensus 254 -vr~~a~~AlG~lg~p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 254 -TRREALRAVGLVGDVEAAPWCLEAMRE--PPWARLAGEAFSLITGMD 298 (410)
T ss_pred -hHHHHHHHHHHcCCcchHHHHHHHhcC--cHHHHHHHHHHHHhhCCC
Confidence 899999999976554431 11111122 226777777888888864
No 90
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.02 Score=59.83 Aligned_cols=183 Identities=13% Similarity=0.067 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280 74 DIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
+...++..|..+...+-. ..-+......++|+.+|..|+--|..-+...|.+.+---...|..+++.|.+..|+.++.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 344444444444332211 1222334456888999998888888888888888887777799999999999999999886
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccc-HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC---CcchHHHHhcC--
Q 016280 153 DPDVTVRTKALGAISSLIRHNKPG-IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN---ASDCSVVDKLG-- 226 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~~~~~-~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~---~~~~~~l~~~G-- 226 (392)
.|..+|.+.+|.+-.++-|+... +-+|+...|+..++.+...++-+++.....++++++-+. ...++.+.++.
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 47799999999999999887654 457788999999999999999999999999999997421 22344444442
Q ss_pred --chHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 227 --FPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 227 --~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.+.|+.-+...++-..+..+-.|.+++..+
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACD 596 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhcc
Confidence 3344555555555444444456666655544
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.36 E-value=0.22 Score=46.37 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=90.7
Q ss_pred cCCCHHHHHHHHHHHHHHhhCC--HHHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280 109 KNSHANIRAKAGEVVTTIVQNN--PRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN 184 (392)
Q Consensus 109 ~s~~~~IR~~Aa~vLg~iaqNN--p~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g 184 (392)
.+.+=+.|..|..-|..++..+ ......+++. ..+..++..+.+ ....+...|+.+|+.++++.......+ ...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 4456678888888888887766 2222333322 344555555443 456788999999999998876666555 445
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 185 GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 185 Gl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
-++.|+..+.++..-++..|..+|..++...+..... +++.+...+.+.++.+|..++..|..+....+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 7888999999988999999999999999764411111 15667777889999999999999999888776
No 92
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.075 Score=57.00 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHH------cC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHH
Q 016280 75 IEDMLDELQEHVESIDMANDLHS------IG-GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPL 146 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~------lG-gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~L 146 (392)
.|.|+..|..+||+ -|.-+-. +. .+|.++.+.+|+++.||..|..|+-...-.++.. ..... ..+..|
T Consensus 145 ~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~l 220 (885)
T KOG2023|consen 145 CEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEIL 220 (885)
T ss_pred cchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHH
Confidence 36788889888884 3333322 22 3577888899999999999999998877655422 22222 245556
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-
Q 016280 147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL- 225 (392)
Q Consensus 147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~- 225 (392)
..+ .+|.+++||+....|++-+..-.+... .=.-.+.++.+.+..+..|..+...||-+...++.. +..+..+...
T Consensus 221 Fal-anD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l 297 (885)
T KOG2023|consen 221 FAL-ANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYL 297 (885)
T ss_pred HHH-ccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHH
Confidence 665 588899999999999999875443211 111356778888888888999999999999999964 4555544433
Q ss_pred -CchHHHHHh
Q 016280 226 -GFPRLMLHL 234 (392)
Q Consensus 226 -G~v~~Lv~L 234 (392)
.++|.|+.-
T Consensus 298 ~kliPvLl~~ 307 (885)
T KOG2023|consen 298 DKLIPVLLSG 307 (885)
T ss_pred HHHHHHHHcc
Confidence 455655543
No 93
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.33 E-value=0.13 Score=56.99 Aligned_cols=165 Identities=17% Similarity=0.161 Sum_probs=103.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHHc---C------CHHHHHHhhCCCC-C---------------
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEA---N------GLEPLLSNFASDP-D--------------- 155 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaq-NNp~~Q~~vl~~---g------~l~~Ll~LL~s~~-~--------------- 155 (392)
..+++.++|++.+|+..|+.+||+++- |-+..--.+++. . .+-.|...+.... +
T Consensus 860 ~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k 939 (1233)
T KOG1824|consen 860 DTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFK 939 (1233)
T ss_pred HHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 356789999999999999999999987 444332222221 0 0111112111111 1
Q ss_pred ------HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 156 ------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 156 ------~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+..|.-..-+|+-++-.+| .--++.|...+.|+....|.-++.++.+.+.+.+...+.+.+ ..+.
T Consensus 940 ~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig 1010 (1233)
T KOG1824|consen 940 HCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIG 1010 (1233)
T ss_pred hcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHH
Confidence 1122222222222222221 113566777788888888999999999988877776655544 3466
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHH
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQL 275 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~ 275 (392)
....+++++|..||..|+.++-..+.+.|..+++.+.+-++.|.+.
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 7788899999999999999999998888866665544444444433
No 94
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.23 E-value=0.077 Score=48.12 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc-hHHHHH
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF-PRLMLH 233 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~-v~~Lv~ 233 (392)
++.+|..++-+++-++.-++...+. -++.+..+|.++++.+|..|+..|++|+..+.... .|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHH
Confidence 4689999999999988877754443 47889999999999999999999999997643221 133 367778
Q ss_pred hhcCCChHHHHHHHHHHHHHHcC
Q 016280 234 LASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 234 LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
++.++++.++..|...+..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999888
No 95
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.18 E-value=0.06 Score=55.41 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=83.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH-------------HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRS-------------QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS 168 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~-------------Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~ 168 (392)
..|+.+|.+ +++...|+..++.++.+.+.+ ++.++. -.+|+|++-+... +...|..-+.|||.
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHHHH
Confidence 445555555 778999999999999884444 233332 2578888877663 44589999999999
Q ss_pred hhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280 169 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 169 lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
++++-|...-.=.-..-+|.|.+.|..++..++.-++..|..++.+.++
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 9998774432222345789999999999999999999999999987643
No 96
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.87 Score=49.76 Aligned_cols=152 Identities=19% Similarity=0.206 Sum_probs=87.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH-HhhCCCCCHHHHHHHH-------------HHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL-SNFASDPDVTVRTKAL-------------GAI 166 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll-~LL~s~~~~~vr~kAl-------------~AL 166 (392)
+|.+..+|+|.++-||..|.-+|.++-+|.. .++- + .|-|+ ..|..+.|+..+++|. |..
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~p-D-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLIP-D-APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhcC-C-hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence 3444579999999999999999999988732 1111 1 22333 2344445556666552 444
Q ss_pred HHhhcCC--ccc-HHHHH-------------HcChHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhh
Q 016280 167 SSLIRHN--KPG-IEAFR-------------LANGYAALRDALGSE-----------------SVKFQRKALNLIQYLLN 213 (392)
Q Consensus 167 S~lvR~~--~~~-~~~f~-------------~~gGl~~L~~lL~s~-----------------d~kl~~kA~~lLs~L~~ 213 (392)
+|+-.-. ... +..|+ ...-+..+..+|.+. ++.....|+..+-.|+.
T Consensus 210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~ 289 (948)
T KOG1058|consen 210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLV 289 (948)
T ss_pred hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHH
Confidence 4442211 111 11111 112345566666653 45555666666666664
Q ss_pred cCCcchH------HHHhc---------CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 214 ENASDCS------VVDKL---------GFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 214 ~~~~~~~------~l~~~---------G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
..+.+.. .+.+. |++-.++.+|.++|.+++.+++.....|++...
T Consensus 290 kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 290 KESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred hccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 4333321 22222 444556677889999999999999988887665
No 97
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.04 E-value=0.21 Score=49.31 Aligned_cols=136 Identities=24% Similarity=0.259 Sum_probs=76.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
-.++.++.++.+.+..+|..|++.++.+.. .-+++.|..++.. .+..+|..|++||+.+ +.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d-~~~~vr~~a~~aLg~~--~~~---- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD-EDPRVRDAAADALGEL--GDP---- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC-CCHHHHHHHHHHHHcc--CCh----
Confidence 346666677777677777777777554432 1235566666544 4556777777755553 112
Q ss_pred HHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCC----------------------c---ch----HHHHhc---
Q 016280 179 AFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENA----------------------S---DC----SVVDKL--- 225 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~----------------------~---~~----~~l~~~--- 225 (392)
-.++.|+.++. +.+..+|..|+++|..+-.... . .+ ..+...
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~ 179 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP 179 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence 13445566665 4666667766666666543210 0 00 111112
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 226 GFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
-.++.+..++.+.+..+|..+..+|+.+..+.
T Consensus 180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 180 EAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 24556666666777777777777777776664
No 98
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.96 E-value=0.46 Score=42.68 Aligned_cols=125 Identities=12% Similarity=0.146 Sum_probs=93.0
Q ss_pred HHHHHcCCHHHHHHhhCCCCC-----HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHH
Q 016280 135 QLVMEANGLEPLLSNFASDPD-----VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNL 207 (392)
Q Consensus 135 ~~vl~~g~l~~Ll~LL~s~~~-----~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~l 207 (392)
..|++.||+..|++++.+... .+....++.|+..+.-|.--..+ .+...=+.-++..... .+..+...|+..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 348899999999999987653 36677788888888776543433 2233334445555543 368999999999
Q ss_pred HHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 208 IQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 208 Ls~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
|-+++...+.....+.+.=-++.|+..|...+.++|..|+..+-.|-...+..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999866665666666666899999999999999999998888877666543
No 99
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.87 E-value=0.015 Score=37.42 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN 129 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN 129 (392)
+|.+++++++++++||..|+++||.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999874
No 100
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.79 E-value=0.53 Score=42.64 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 191 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~ 191 (392)
++.||..+..++|-++...|..-+ ..++.+...|.. +++.||..|+..|+.++.+.--.. ....+..+..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 578999999999999988774433 357788888765 689999999999999997643211 1223367778
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhc
Q 016280 192 ALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 192 lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
++.++++.++.-|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999865
No 101
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.78 E-value=0.38 Score=49.01 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=112.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL 182 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~~ 182 (392)
+..++-+++.+||..|..++..+..+....+. +.+.+.---++.-|..+ ....-|..|+--+..++.-.. +.+. +.
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~-~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~-~~ 106 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDEESLQI-LLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE-IP 106 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHH-HHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc-CC
Confidence 33344444499999999999999988766655 67766444445556654 345678888888877775532 2222 26
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.|-+..|+.+..+.+.+++.-|...|.-|+-.+|. .+.+.|+++.|+..+.++..++.+..+.++..+..+..
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 67788899999999999999999999999876554 78899999999998887777788999999998877654
No 102
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=1.2 Score=46.15 Aligned_cols=181 Identities=18% Similarity=0.219 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhcCC-CChHHHHHcCChHHHHH-hh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-
Q 016280 76 EDMLDELQEHVESI-DMANDLHSIGGLAPLLG-YL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA- 151 (392)
Q Consensus 76 ~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~-lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~- 151 (392)
...|..++++++-- +.+...++.|.+.-|+. +- +.+-...+.+|..+++-+-||+...+..+-..+|+-.|++-+.
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 44555666666622 44566667776666665 33 3466778999999999999999888887878899999988764
Q ss_pred ---CC---C-CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--cchHHH
Q 016280 152 ---SD---P-DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--SDCSVV 222 (392)
Q Consensus 152 ---s~---~-~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~--~~~~~l 222 (392)
.+ . ..+.-.+...+|+++++. +.+...|+...|+....-+++. ....+-.|..+|-+...+.. ..+..+
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kf 357 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKF 357 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHH
Confidence 23 1 235677888999999986 6789999999999988777765 45556677888888887655 457788
Q ss_pred HhcCchHHHHHhhc----------CCChHHHHHHHHHHHHHHcCCC
Q 016280 223 DKLGFPRLMLHLAS----------SEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~----------~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
++.+.++.+..+.. ..-...-|++...|+++-..+.
T Consensus 358 Ve~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~ 403 (536)
T KOG2734|consen 358 VEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD 403 (536)
T ss_pred HHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence 88887877776543 1224566889888888866553
No 103
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.18 Score=54.13 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=111.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHHc---CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 176 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~-vl~~---g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~ 176 (392)
+|.|..+|.+++....+-|..+|..++.+.+..-+. +... -.+|++++.+.+ +++.+|..|+.++-..+-....+
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHH
Confidence 456667889999999999999999999887643321 2211 246889998777 58999999999999977655433
Q ss_pred HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-h-cCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 177 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD-K-LGFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 177 ~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~-~-~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
... ..-.=++.|..+-...++.||...|.++.+|+.-.++ .+. . .++++.++...++.|..|--.|......++
T Consensus 209 l~~-~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 209 LYV-HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 211 1122345566666778899999999999999964333 222 2 267888888888888888877888888888
Q ss_pred cCCC
Q 016280 255 REKA 258 (392)
Q Consensus 255 ~~~~ 258 (392)
+...
T Consensus 285 eqpi 288 (885)
T KOG2023|consen 285 EQPI 288 (885)
T ss_pred cCcC
Confidence 8763
No 104
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.39 Score=50.04 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=126.2
Q ss_pred HHhhcCCCChHHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHH
Q 016280 83 QEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK 161 (392)
Q Consensus 83 ~~lve~iDnA~d~~~lGgl~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~k 161 (392)
.+++-+.-||.-+|.-.|+..|.. -+++.++-+ ..++.+++|+.-..|..|+++ +..|...+..+.+++.-..
T Consensus 451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~E 524 (791)
T KOG1222|consen 451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLE 524 (791)
T ss_pred HHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHH
Confidence 567778899999999999999985 677777653 578999999988899999986 6678888787778888899
Q ss_pred HHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC--
Q 016280 162 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-- 237 (392)
Q Consensus 162 Al~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-- 237 (392)
+++.++++.-..-+-...+...+-+|.+...|+.. ...+.....-++.-++.+ ......+...|+|+.+++||+.
T Consensus 525 ClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 525 CLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred HHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhc
Confidence 99999998765554455555678999999988863 245555566666655542 3445567788999999999984
Q ss_pred CChHHHHHHHHHHHHHHcC
Q 016280 238 EDPDVREAALRGLLELARE 256 (392)
Q Consensus 238 ~d~~v~E~aL~aL~~L~~~ 256 (392)
.|..+.-..+....++..|
T Consensus 604 eDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 604 EDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 4556666666666666665
No 105
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.68 E-value=1.2 Score=42.97 Aligned_cols=187 Identities=21% Similarity=0.271 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHhhcCC-CChHHHHH-cCChHHHHH-hhc----------CCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESI-DMANDLHS-IGGLAPLLG-YLK----------NSHANIRAKAGEVVTTIVQNNPRSQQLV 137 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~-lGgl~~Ll~-lL~----------s~~~~IR~~Aa~vLg~iaqNNp~~Q~~v 137 (392)
+++.+|.+|.+|.+--+.. |.|--+-. .|-...++. .+. ++...-|..-+-+|=.|+..+|+.+..|
T Consensus 37 ~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~F 116 (293)
T KOG3036|consen 37 SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAF 116 (293)
T ss_pred CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHH
Confidence 4456678888888877755 66765544 444444433 221 1233456555666666777789999999
Q ss_pred HHcCC---HHHHHHhh-CCCCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 138 MEANG---LEPLLSNF-ASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 138 l~~g~---l~~Ll~LL-~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
++... +-+++..- .+.+.+..|..+++.|++++.+.......|+ ..+.++...+.+.+.+.--|.-|.|.+..++
T Consensus 117 L~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 117 LRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred HHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 98854 33444432 2335678999999999999999877766665 5788999999999999999999999999888
Q ss_pred hcCCcc---h---HHHHhcC-chHH-HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 213 NENASD---C---SVVDKLG-FPRL-MLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 213 ~~~~~~---~---~~l~~~G-~v~~-Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.++..- + ++|-.-+ ++.. +.++.+.++.-+..++++...+|+.+-
T Consensus 197 ldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 197 LDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred hccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 654332 1 2222222 2222 344556788888899999988886654
No 106
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.33 Score=52.60 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCH
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV 156 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~ 156 (392)
-||.-|.- +-..|.|+|+. +-++.+|+|+.+-+|..|.-++=.+.---|.. +. ..+|.|..-|.. +|+
T Consensus 128 iAL~GLS~-fvTpdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeD-pDp 195 (877)
T KOG1059|consen 128 LALSGLSC-IVTPDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLED-PDP 195 (877)
T ss_pred heeccccc-ccCchhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccC-CCc
Confidence 34555543 23456777763 45666777777777777777776666554533 22 246777776554 567
Q ss_pred HHHHHHHHHHHHhhcCCccc
Q 016280 157 TVRTKALGAISSLIRHNKPG 176 (392)
Q Consensus 157 ~vr~kAl~ALS~lvR~~~~~ 176 (392)
.|+..|+..|+-++|.+|.+
T Consensus 196 ~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 196 SVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHHHHHHHHhhCCcc
Confidence 77777777777777766644
No 107
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.083 Score=57.32 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=116.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
+.++.++.+....+-+++...---+.+.++-.|.-+. +++..++.=. .++++.+|..|+...+++--. .
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~-~d~np~iR~lAlrtm~~l~v~-~---- 117 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDC-EDPNPLIRALALRTMGCLRVD-K---- 117 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccC-CCCCHHHHHHHhhceeeEeeh-H----
Confidence 3478889999999999999999999999999885533 5566666643 346899999999988876322 1
Q ss_pred HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+ ...-+..|.++++++++-+|..|+..+..+-. .+.+.+...|++..|-.++.+.++.|...|+.+|..|+...+
T Consensus 118 -i-~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 118 -I-TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred -H-HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 1 22356789999999999999999999888865 445578899999999999999999999999999999998775
No 108
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.14 Score=55.01 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHcCC--------------hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH----HHH
Q 016280 73 QDIEDMLDELQEHVESIDMANDLHSIGG--------------LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP----RSQ 134 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDnA~d~~~lGg--------------l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp----~~Q 134 (392)
-+.+.+++.|.+++.+-|...--+...| ....+.+|..++..||..|..++.-..+-.| ..+
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 5677888889999998887633333333 4455678888899999998555543333221 111
Q ss_pred H-HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC----------------------Cccc---------------
Q 016280 135 Q-LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH----------------------NKPG--------------- 176 (392)
Q Consensus 135 ~-~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~----------------------~~~~--------------- 176 (392)
+ .=+.-.++..+...+. |-+..||+.|.-+|+.+-.- ....
T Consensus 274 ~e~kl~D~aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhHHHHHHHHHHHHh-cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 1 1111134555555533 34556777666666544100 0000
Q ss_pred -------------HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHH
Q 016280 177 -------------IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVR 243 (392)
Q Consensus 177 -------------~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~ 243 (392)
...++..|+...+++.|..+=..||+.|+..+..|+...|..... .+..|+..++++..+||
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVR 427 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHH
Confidence 111233445566777777666899999999999999877776443 35678889999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 016280 244 EAALRGLLELAREKA 258 (392)
Q Consensus 244 E~aL~aL~~L~~~~~ 258 (392)
.+|+.+|..|+.+-.
T Consensus 428 L~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA 442 (823)
T ss_pred HHHHHHHHHHHHHhe
Confidence 999999998887743
No 109
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=95.52 E-value=0.13 Score=53.34 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD 153 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~ 153 (392)
+.++-..|+++. .-.|-.-++..| +..++.+-+ ...+++....+.+|+++-.+....-..+++.|++..++--...
T Consensus 199 Rve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR- 275 (832)
T KOG3678|consen 199 RVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRR- 275 (832)
T ss_pred HHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeeccc-
Confidence 334434444322 235555666666 666666554 4678899999999999999755444558889999888766565
Q ss_pred CCHHHHHHHHHHHHHhhcCC-cccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 154 PDVTVRTKALGAISSLIRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~-~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
.++.+.+.+..||+|++-|. ...+..+++...-+.|..+..+.|.-+|-.||.++.-|++. ++....+.+.|-+
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTL 350 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccch
Confidence 56889999999999976653 44567777888888999998899999999999999999864 4443344444443
No 110
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.61 Score=51.11 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=111.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc----------C-----
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----------N----- 141 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~----------g----- 141 (392)
.||-.|..++ +-+.|+|+ .|-+-++|++.++-||..|+-|.-.+..-.|..-+.|+.. |
T Consensus 126 lAL~alg~i~-s~Emardl-----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~ 199 (866)
T KOG1062|consen 126 LALCALGNIC-SPEMARDL-----APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAG 199 (866)
T ss_pred HHHHHhhccC-CHHHhHHh-----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeH
Confidence 4666666533 45677776 4556678888888888888877766655555433333221 2
Q ss_pred --------------------CHHHHHHhhCC--------------CCCHHHHHHHHHHHHHhhcCCcccHHHHH------
Q 016280 142 --------------------GLEPLLSNFAS--------------DPDVTVRTKALGAISSLIRHNKPGIEAFR------ 181 (392)
Q Consensus 142 --------------------~l~~Ll~LL~s--------------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~------ 181 (392)
.++-|+..|.. =+++.++.++++-|+-+-++.+.+.+.+.
T Consensus 200 l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqv 279 (866)
T KOG1062|consen 200 LHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQV 279 (866)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 12333333321 04788999999988888888776655543
Q ss_pred -------HcChHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchH--------HHH--hcCch----HHHHHhh
Q 016280 182 -------LANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCS--------VVD--KLGFP----RLMLHLA 235 (392)
Q Consensus 182 -------~~gGl~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~--------~l~--~~G~v----~~Lv~LL 235 (392)
..-|-.+|..+..+ ++..+|..|+..|..++.+...+.. .++ +..++ ..++++|
T Consensus 280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL 359 (866)
T KOG1062|consen 280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL 359 (866)
T ss_pred HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh
Confidence 12355555555443 4688888888888888865444422 111 11223 2478889
Q ss_pred cCCChHHHHHHHHHHHHHHcCCC
Q 016280 236 SSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 236 ~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+++|..++..|+..+..|+....
T Consensus 360 ~DpD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVNESN 382 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988888775
No 111
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=1.5 Score=49.93 Aligned_cols=217 Identities=19% Similarity=0.162 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhhCC--ccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHH
Q 016280 30 EEDRRWFMEAMQSQT--VDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLG 106 (392)
Q Consensus 30 ~E~~~~L~~Al~~~~--~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~ 106 (392)
....+.|.+++.+.. .=..+++..+...|.++... .+.-.+...+..|..+++-.++- -+|+- ..++-+|=
T Consensus 672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-----~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~EvIL 745 (1176)
T KOG1248|consen 672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-----SSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEVIL 745 (1176)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHH
Confidence 455677887777621 11123444444444443321 22234456677777777766611 12222 23444444
Q ss_pred hhcCCCHHHHHHHHHHHHHHh--------hCCHHHHHHHHHcCCHHHHHHhhCCC--CCH-HHHHHHHHHHHHhhcCCcc
Q 016280 107 YLKNSHANIRAKAGEVVTTIV--------QNNPRSQQLVMEANGLEPLLSNFASD--PDV-TVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 107 lL~s~~~~IR~~Aa~vLg~ia--------qNNp~~Q~~vl~~g~l~~Ll~LL~s~--~~~-~vr~kAl~ALS~lvR~~~~ 175 (392)
+++.-+..-|..|..+|-.+. .|+| +.. .|...+..+... .+. -+...-+.|+.+++.++..
T Consensus 746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~-----~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 746 SLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASA-----ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred hcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 447778889999999887777 2233 122 333344333321 122 3333338999999987766
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
....-...+-+..+..+|.+....++.-|..++.-++...|+..-.....-+++.+..+++.....++.++-..|--|++
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 55555566778888889999999999999999999998777654444444577888888777788999999999999988
Q ss_pred CCCh
Q 016280 256 EKAD 259 (392)
Q Consensus 256 ~~~~ 259 (392)
.+..
T Consensus 899 kfg~ 902 (1176)
T KOG1248|consen 899 KFGA 902 (1176)
T ss_pred HhCH
Confidence 7763
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.37 E-value=0.13 Score=42.36 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh-cCchHHHHHhhc
Q 016280 158 VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK-LGFPRLMLHLAS 236 (392)
Q Consensus 158 vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~-~G~v~~Lv~LL~ 236 (392)
.|.-++.+|++++.+.+.....+ ..--++++..++.+.+.++|--||.+|.+++..... +.+.. ..+...|..++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHc
Confidence 36778889998877765554333 345788899999999999999999999999864322 12222 245677777777
Q ss_pred CCChHHHHHHHHHHHHHH
Q 016280 237 SEDPDVREAALRGLLELA 254 (392)
Q Consensus 237 ~~d~~v~E~aL~aL~~L~ 254 (392)
+.+..||..| ..|.++.
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 8888877666 4554443
No 113
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=3.9 Score=42.41 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHh---------------------------
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIV--------------------------- 127 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~ia--------------------------- 127 (392)
+...++.+.-+....|.=-.|++++|++.|+.||.|.+.+|-.....++-.+.
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 33455666666677788889999999999999999988776554444433222
Q ss_pred --hC----------------------------CHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCccc
Q 016280 128 --QN----------------------------NPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPG 176 (392)
Q Consensus 128 --qN----------------------------Np~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~ 176 (392)
|| .|.+-..+.+.|.+..|+.-+. ..+-...+..|.--++-+..+...+
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 22 1111122233333333333111 1111222333333344445555556
Q ss_pred HHHHHHcChHHHHHHhhcC---CC---HHHHHHHHHHHHHHhh--cCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280 177 IEAFRLANGYAALRDALGS---ES---VKFQRKALNLIQYLLN--ENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 248 (392)
Q Consensus 177 ~~~f~~~gGl~~L~~lL~s---~d---~kl~~kA~~lLs~L~~--~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~ 248 (392)
+......+|+.++.+-+.- .+ ..=+.--..+.-+||. ..+.+++.|.....++...-+++. ....+-.++.
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 6666778899988876642 12 2223333444444442 256778888887777655555554 4456666777
Q ss_pred HHHHHHcCCChhhhhh
Q 016280 249 GLLELAREKADGSAIK 264 (392)
Q Consensus 249 aL~~L~~~~~~~~~~~ 264 (392)
+|-.+..+. .++..|
T Consensus 340 vLd~am~g~-~gt~~C 354 (536)
T KOG2734|consen 340 VLDHAMFGP-EGTPNC 354 (536)
T ss_pred HHHHHHhCC-CchHHH
Confidence 776655544 344444
No 114
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.01 E-value=0.33 Score=54.05 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=82.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
|..|..-..+.....|.-.+.|||.++-++|.. .+|.|=..+.+ .+...|.-++.|+--.+...++..+..
T Consensus 934 W~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~ 1004 (1233)
T KOG1824|consen 934 WALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPL 1004 (1233)
T ss_pred HHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHH
Confidence 555666666677888999999999999999954 46666666555 467889988888888777777665544
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
. ..-+.-...+++.+|.+||+.|+.++...++..|+.
T Consensus 1005 l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 1005 L-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred H-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence 3 334555567888999999999999999998776653
No 115
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.58 Score=49.79 Aligned_cols=169 Identities=17% Similarity=0.121 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHHcCCHHHHHHhhC
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq--NNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
.+..+++-|.-+.+..+-.-.++--..+|.+.+.|..++++||..+..+|-.++. .||.+|. .+|.|++.+.
T Consensus 270 tK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~ 343 (569)
T KOG1242|consen 270 TKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALA 343 (569)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhc
Confidence 4556677776666655666666667888999999999999999999999877665 5676665 4788999876
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----SESVKFQRKALNLIQYLLNENASDCSVVDKL-- 225 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~----s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-- 225 (392)
.. ...+ .+++..|+.-. .-.+++.-.+.+++.+|+ ..+..++++++-.+-+++..-++.+ .+...
T Consensus 344 dp-~~~~-~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~-~lapfl~ 414 (569)
T KOG1242|consen 344 DP-SCYT-PECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK-DLAPFLP 414 (569)
T ss_pred Cc-ccch-HHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH-HHhhhHH
Confidence 53 2122 33444443311 112234445555555554 4567788999999999886532222 22211
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 226 GFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
-++|.|=..+.+..+++|+-++++|+.+.++-
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 23344444455678999999999998876643
No 116
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.7 Score=50.15 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=56.8
Q ss_pred hHHHHHcCCh-HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---CC---------CCHHH
Q 016280 92 ANDLHSIGGL-APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SD---------PDVTV 158 (392)
Q Consensus 92 A~d~~~lGgl-~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s~---------~~~~v 158 (392)
.-|++..|+| .+++.+|...+-.|-..|...|-.++.+||+.+...+-. ++..|..+.. .+ +.+.+
T Consensus 179 spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL 257 (938)
T KOG1077|consen 179 SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWL 257 (938)
T ss_pred CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHH
Confidence 5667778887 678899999999999999999999999999876633321 2333333321 11 46788
Q ss_pred HHHHHHHHHHhhc
Q 016280 159 RTKALGAISSLIR 171 (392)
Q Consensus 159 r~kAl~ALS~lvR 171 (392)
.+|++..|.+.=+
T Consensus 258 ~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 258 QVKLLRLLQIYPT 270 (938)
T ss_pred HHHHHHHHHhCCC
Confidence 9999998888733
No 117
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.14 Score=55.57 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=102.9
Q ss_pred CChHHHHHhhcCC--C-----HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH-hhCCCCCHHHHHHHHHHHHHhh
Q 016280 99 GGLAPLLGYLKNS--H-----ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS-NFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 99 Ggl~~Ll~lL~s~--~-----~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~-LL~s~~~~~vr~kAl~ALS~lv 170 (392)
+.+|.|+++|... + =.+-..|.-||.-.+|. +.+.++. .++ ++++ -+.+ +|-.-|..|+.|++|+.
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl-~Fiee~i~~-pdwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVL-PFIEENIQN-PDWRNREAAVMAFGSIL 392 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhH-HHHHHhcCC-cchhhhhHHHHHHHhhh
Confidence 3456677877542 1 13566677777777765 3334444 223 3443 3444 57788999999999999
Q ss_pred cCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 016280 171 RHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRG 249 (392)
Q Consensus 171 R~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~-~l~~~G~v~~Lv~LL~~~d~~v~E~aL~a 249 (392)
-+-.+.+..-+..++++.++.++.++..-++.-++|.+..++...++.+. ...-.+.+..++.-| .+++.+-..+..+
T Consensus 393 ~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWA 471 (859)
T KOG1241|consen 393 EGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWA 471 (859)
T ss_pred cCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHH
Confidence 88777777777899999999999988888999999999999987664321 111123333333333 3467777888888
Q ss_pred HHHHHcCCC
Q 016280 250 LLELAREKA 258 (392)
Q Consensus 250 L~~L~~~~~ 258 (392)
+.+|+.+.+
T Consensus 472 f~~Laea~~ 480 (859)
T KOG1241|consen 472 FISLAEAAY 480 (859)
T ss_pred HHHHHHHHH
Confidence 888875444
No 118
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.85 E-value=0.16 Score=46.72 Aligned_cols=141 Identities=23% Similarity=0.256 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhC-CHHHH----HHHH------HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc
Q 016280 115 IRAKAGEVVTTIVQN-NPRSQ----QLVM------EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA 183 (392)
Q Consensus 115 IR~~Aa~vLg~iaqN-Np~~Q----~~vl------~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~ 183 (392)
||..|..+|..++++ .++.= -.++ ....-+.|+.++..|+++.+|..|+.+|+.+..+..+-...--+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 799999999999998 44221 0111 112456788888888999999999999999998753221111111
Q ss_pred C-------------------hHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH----HHHHhhcCCC
Q 016280 184 N-------------------GYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPR----LMLHLASSED 239 (392)
Q Consensus 184 g-------------------Gl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~----~Lv~LL~~~d 239 (392)
. --..|..+|+.+ +..+....+..+..|++..|..+= +.|+++ .+-.++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 1 122345555553 577777888888888887666532 245544 4555677899
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q 016280 240 PDVREAALRGLLELAREKA 258 (392)
Q Consensus 240 ~~v~E~aL~aL~~L~~~~~ 258 (392)
.+++..++.+++.+..-.+
T Consensus 159 ~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 9999999999998876543
No 119
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.79 E-value=1.8 Score=41.94 Aligned_cols=188 Identities=19% Similarity=0.228 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCC-hHHHHH-cCChHHHHH-------hhcCCC--HHHHHHHHHHH---HHHhhCCHHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDM-ANDLHS-IGGLAPLLG-------YLKNSH--ANIRAKAGEVV---TTIVQNNPRSQQ 135 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDn-A~d~~~-lGgl~~Ll~-------lL~s~~--~~IR~~Aa~vL---g~iaqNNp~~Q~ 135 (392)
..++.++.||.+|...-+..++ |--+-. -|.+..|+. .|..+. +..-.+.|.+| -.+|. +|+.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 3568899999999888877744 544443 455555543 233222 22223334443 34554 788999
Q ss_pred HHHHcCCH---HHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccH-HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 016280 136 LVMEANGL---EPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDALGSESVKFQRKALNLIQY 210 (392)
Q Consensus 136 ~vl~~g~l---~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~ 210 (392)
.|++.+.. -|++..-... +-+.+|-..++.|++++....+-. ..+....-++...+.|...+.--|..|.|.+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999764 4444442221 235799999999999998765544 444567889999999999999999999999999
Q ss_pred HhhcCCcc------hHHHHhc-CchHHHH-HhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 211 LLNENASD------CSVVDKL-GFPRLML-HLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 211 L~~~~~~~------~~~l~~~-G~v~~Lv-~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
++.++..- .+.+... .++..++ .+...+++-+-.++.++-..|+.+..
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 98753321 1222222 2233333 34557778888999998888887764
No 120
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.79 E-value=0.28 Score=40.35 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC
Q 016280 116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS 195 (392)
Q Consensus 116 R~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s 195 (392)
|..+.+.|+.++...+..-...++ -.+++++..+. |++..||..|..||-++++......-. .-..-+..|.+++..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 556677777776554433222333 36888998865 478999999999999999876533222 235678899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 016280 196 ESVKFQRKALNLIQYLL 212 (392)
Q Consensus 196 ~d~kl~~kA~~lLs~L~ 212 (392)
.++.||.-| .+|-.|+
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998865 5555554
No 121
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.72 E-value=0.23 Score=53.02 Aligned_cols=213 Identities=18% Similarity=0.221 Sum_probs=116.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHH---HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRS---QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~---Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
|.+|.|...|++.+..|.......+|+++.|.|+. ++... .---|+.+|.+ .+.++|+.|.-.++|+.|---|
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKS-WNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcCH
Confidence 56788999999999999999999999999999852 22211 11236666666 4789999999998888763211
Q ss_pred c------------------------HHHHHH-cChHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcC-CcchHHHHhcC
Q 016280 176 G------------------------IEAFRL-ANGYAALRDALG---SESVKFQRKALNLIQYLLNEN-ASDCSVVDKLG 226 (392)
Q Consensus 176 ~------------------------~~~f~~-~gGl~~L~~lL~---s~d~kl~~kA~~lLs~L~~~~-~~~~~~l~~~G 226 (392)
. ...+.+ +|-+.+|-.+|. .+...+|.-.+.+++++...- ...++.+ .-
T Consensus 764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~ 841 (975)
T COG5181 764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YS 841 (975)
T ss_pred HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 0 000111 222333333332 234444444444444433210 0001111 01
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCh-------hhHHHHHHHH-
Q 016280 227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSP-------EDLGAAREER- 298 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~-------ed~~~~~ee~- 298 (392)
+.|.|-.-|.+.|+..|..|.+.+..|+-+++.- .. .+.--+|.++| .-.|-.-++ |-++.+..-+
T Consensus 842 itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-g~--eda~IHLlNll---wpNIle~sPhvi~~~~Eg~e~~~~~lg 915 (975)
T COG5181 842 ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-GD--EDAAIHLLNLL---WPNILEPSPHVIQSFDEGMESFATVLG 915 (975)
T ss_pred hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-cc--HHHHHHHHHHh---hhhccCCCcHHHHHHHHHHHHHHHHhc
Confidence 2233344455778888899999999999887631 11 11122222222 111111011 1222222222
Q ss_pred --HHHHHHHHHHhCCCccccccceeec
Q 016280 299 --HLVDSLWNACYNEPSSLRDKGLLVL 323 (392)
Q Consensus 299 --~~~~~L~~~~f~~~~~~~~~~~~~~ 323 (392)
-+...+|.-+|.-.+.+|+-=|.|.
T Consensus 916 ~g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 916 SGAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred cHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 3467788888988888888766554
No 122
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=10 Score=43.53 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHc---CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSI---GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEP 145 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~l---Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~ 145 (392)
.+......+.+.|.+++.. +...-+..- -....|..-.++.....|..++.+|..+.+-.+ ..-..+.+ .|+-
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~E 742 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPE 742 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHH
Confidence 3455566788888888876 323222221 123444555667788899999999999998655 22222222 2444
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHhhc-------CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 146 LLSNFASDPDVTVRTKALGAISSLIR-------HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 146 Ll~LL~s~~~~~vr~kAl~ALS~lvR-------~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
+|-.+ ++.+...|..|.-+|=+|++ ++.+. .. ....-+..|...+-.+...+......++++++.+....
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~-~~-~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPA-SA-ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccch-HH-HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44443 55677888888777777764 11220 00 01112333333333444444444467888888765554
Q ss_pred hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 219 CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 219 ~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
...-.=.+++..+..+|.+...+++..|+..+.-++...|.
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 44333446677777788899999999999999999998884
No 123
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.66 E-value=0.071 Score=46.93 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=63.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
++..|.+-|.+.++.++..|..+|-.|++|. +.++..|...+.+..|+.++....+..|+.+++..|-+-...+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4566777888999999999999999999995 6788888888999999999887678899999998887766554
No 124
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.61 E-value=1.3 Score=44.21 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=117.5
Q ss_pred hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHHc-C----CHHHHHHhhCCCCC---------H
Q 016280 92 ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ-NNPRSQQLVMEA-N----GLEPLLSNFASDPD---------V 156 (392)
Q Consensus 92 A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq-NNp~~Q~~vl~~-g----~l~~Ll~LL~s~~~---------~ 156 (392)
++.|.+-. +..+.+.|++....+...+..++..++. +.......|+.. + +++.|+..=..+.. .
T Consensus 50 ~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 50 IRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 44444443 7888899999999999999999999999 887777777765 2 34444433111111 1
Q ss_pred HHHHHHH-HHHHHhhcCCcccHHHHHHcC-hHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCC---cchHHHHhcCchHH
Q 016280 157 TVRTKAL-GAISSLIRHNKPGIEAFRLAN-GYAALRDALGSESVKFQRKALNLIQ-YLLNENA---SDCSVVDKLGFPRL 230 (392)
Q Consensus 157 ~vr~kAl-~ALS~lvR~~~~~~~~f~~~g-Gl~~L~~lL~s~d~kl~~kA~~lLs-~L~~~~~---~~~~~l~~~G~v~~ 230 (392)
.+|...+ ++||-+..+++.....++..+ -+..+.+-|..++..+-...+..+. +++.+.. ..+-.+.....+.+
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 7787776 555555555555666776654 4666777788888888888887777 4655432 22445666678899
Q ss_pred HHHhhcCCCh----HHHHHHHHHHHHHHcCCChh
Q 016280 231 MLHLASSEDP----DVREAALRGLLELAREKADG 260 (392)
Q Consensus 231 Lv~LL~~~d~----~v~E~aL~aL~~L~~~~~~~ 260 (392)
|+.+...++. .+.+.+-..|..++++...+
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCCCcc
Confidence 9998887777 89999999999999866543
No 125
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=3 Score=41.91 Aligned_cols=266 Identities=17% Similarity=0.148 Sum_probs=168.1
Q ss_pred HHHHHHHHHHhhcCCC-Ch----HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHH--HH
Q 016280 75 IEDMLDELQEHVESID-MA----NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP--LL 147 (392)
Q Consensus 75 ~~~aL~~L~~lve~iD-nA----~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~--Ll 147 (392)
+.-++..+--++|+-| |+ ...++.|.++.++.++-.++.+|-..|...|..++-- |..-+.+++...+.+ +.
T Consensus 99 KiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlr 177 (524)
T KOG4413|consen 99 KILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLR 177 (524)
T ss_pred hhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHh
Confidence 4456677777788877 33 2344678888889999999999999999999999853 556677777766543 34
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLG 226 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G 226 (392)
.+-.. .+.-+|...+.-|--+..-.+......-..|-+..|..=|+. +|.-++..+.-+...|... ...++.+.+.|
T Consensus 178 nlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeg 255 (524)
T KOG4413|consen 178 NLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEG 255 (524)
T ss_pred HHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhh
Confidence 44333 344566666555544444445555566677778887777776 6778888888888888753 45677888999
Q ss_pred chHHHHHhhcCCChHHHH--HHHHHHHHHHcCCC-hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH----
Q 016280 227 FPRLMLHLASSEDPDVRE--AALRGLLELAREKA-DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERH---- 299 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E--~aL~aL~~L~~~~~-~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~---- 299 (392)
+|..+.+++...+.+--+ .++-..+.+-.... -.+.. ...-..+...++..++.|+.-+.+-+++..+.+.
T Consensus 256 lIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvse--eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 256 LIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSE--EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred HHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCH--HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 999999998855443222 23333222221111 00000 1112445556666666666545555555554442
Q ss_pred --------------HHHHHHHHHhCCCcccccc----ceeeccCCCCCCcccc--ccccCCchhhh
Q 016280 300 --------------LVDSLWNACYNEPSSLRDK----GLLVLPGEDAPPPDVA--SKHFEPPLRAW 345 (392)
Q Consensus 300 --------------~~~~L~~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 345 (392)
..++|+-..|....+-+.+ ++-.|+|+--|||.-. ||--+...-.|
T Consensus 334 nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 334 NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 2356677777777766666 6778899998888643 44444433334
No 126
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.48 E-value=0.24 Score=51.59 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=89.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhh----CCHH---HHHHHHHcCCHHHHHHhhC--CCCCHHHHHHHHHHHHHhhc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQ----NNPR---SQQLVMEANGLEPLLSNFA--SDPDVTVRTKALGAISSLIR 171 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaq----NNp~---~Q~~vl~~g~l~~Ll~LL~--s~~~~~vr~kAl~ALS~lvR 171 (392)
...++..|.+..-..|..|+|.+|+|.. |-|. .++.+... .+..+++.-. ......|+.+|+.||+++..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 3445555666667889999999999763 4443 34443322 3444554422 22245799999999999864
Q ss_pred CCc----ccHHHHHHcChHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC----chHHHHHhhc-CCChH
Q 016280 172 HNK----PGIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASDCSVVDKLG----FPRLMLHLAS-SEDPD 241 (392)
Q Consensus 172 ~~~----~~~~~f~~~gGl~~L~~l-L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G----~v~~Lv~LL~-~~d~~ 241 (392)
--. .+.... ..+.+..+... +-....+||=.||+++++|..+..- .+.++. +.+.|..|+. ..+..
T Consensus 514 vlq~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~---~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 514 FLQPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL---PLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred HHHHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhhcCccc---cccCCCchHHHHHHHHHHHHHhccce
Confidence 211 111111 12222222222 2234689999999999999975322 123333 3455556554 57889
Q ss_pred HHHHHHHHHHHHHcCC
Q 016280 242 VREAALRGLLELAREK 257 (392)
Q Consensus 242 v~E~aL~aL~~L~~~~ 257 (392)
+|..|+.+|..-.+-.
T Consensus 590 VRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 590 VRIRAAAALSVPGKRE 605 (728)
T ss_pred EeehhhhhhcCCCCcc
Confidence 9999999997655433
No 127
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.39 E-value=0.4 Score=43.11 Aligned_cols=110 Identities=23% Similarity=0.317 Sum_probs=72.6
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCC--------CCCHHHHHHHHHHHHHhh
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFAS--------DPDVTVRTKALGAISSLI 170 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s--------~~~~~vr~kAl~ALS~lv 170 (392)
....++..|.+..... ....-|...-.+++ .--+.|++.||+..|+.+|.. ..+......++.+|-+++
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455667676544332 22222222223333 333448889999999887752 245678888999999988
Q ss_pred cCCcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 171 RHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 171 R~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
. +..+...++. .+++..|+.+|.+++.+++.-|+.+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4 4566666665 689999999999999999999999999887
No 128
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.37 E-value=0.58 Score=42.07 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC--CHHHHHHhhCCCCCHHHHHHHHHHHHHhh---cCCcc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASDPDVTVRTKALGAISSLI---RHNKP 175 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g--~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv---R~~~~ 175 (392)
+..+..+|++.++.-||.++.+++..+++++. +.+.+++ .+..|+.+|.+..+..++..++.+++.+. ++++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34567899999999999999999999998742 3343443 57889999988777888888888888764 56666
Q ss_pred cHHHHHHcCh---HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 176 GIEAFRLANG---YAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 176 ~~~~f~~~gG---l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
-...+..... ++.++.+++. ......++.+|+.|...++..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 5555544332 2223333332 566677788888887665554
No 129
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=94.33 E-value=0.59 Score=48.76 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHcCCHHHHHHhh---------CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-----C-
Q 016280 133 SQQLVMEANGLEPLLSNF---------ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-----S- 197 (392)
Q Consensus 133 ~Q~~vl~~g~l~~Ll~LL---------~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-----d- 197 (392)
..+.++...++..|+++- ....+..+...|+-+|+|++-+++.+++.|.+.|+...++..|+.. +
T Consensus 14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~ 93 (446)
T PF10165_consen 14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS 93 (446)
T ss_pred cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence 334445455566666654 3446789999999999999999999999999999999999998764 3
Q ss_pred --HHHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHHHHhhc----------C-------CChHHHHHHHHHHHHHHcCC
Q 016280 198 --VKFQRKALNLIQYLLNENASDC-SVVDKLGFPRLMLHLAS----------S-------EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 198 --~kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~Lv~LL~----------~-------~d~~v~E~aL~aL~~L~~~~ 257 (392)
.-+-.|-+|++.++. +..+ +.+.+.+++..++..|. . .+.....-+|.++.|+..+.
T Consensus 94 d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~ 170 (446)
T PF10165_consen 94 DVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY 170 (446)
T ss_pred hHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 334455555555554 3344 44445577777666542 0 13345577789999998877
Q ss_pred Chh
Q 016280 258 ADG 260 (392)
Q Consensus 258 ~~~ 260 (392)
+..
T Consensus 171 ~~~ 173 (446)
T PF10165_consen 171 PKS 173 (446)
T ss_pred Ccc
Confidence 754
No 130
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.24 E-value=1.4 Score=48.58 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 154 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~ 154 (392)
+.+.+.-.-..+-..+....+. .+..+.+=|.++++.||..|...++.+= .+ + +++ ..++++.+++.. +
T Consensus 71 lKrL~ylYl~~yak~~P~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~--~~---e-l~~-~~~~~ik~~l~d-~ 139 (757)
T COG5096 71 LKRLLYLYLERYAKLKPELALL---AVNTIQKDLQDPNEEIRGFALRTLSLLR--VK---E-LLG-NIIDPIKKLLTD-P 139 (757)
T ss_pred HHHHHHHHHHHHhccCHHHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcC--hH---H-HHH-HHHHHHHHHccC-C
Confidence 3445444444444334433222 2455667778899999999988888763 22 2 222 357777787665 6
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
++.||++|+.||..+-|-. ...+.+.|-+..+..++.+.++.+...|...+..+..+
T Consensus 140 ~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 140 HAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7899999999999987643 34565677777888888888899999888888777543
No 131
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.14 E-value=0.48 Score=51.36 Aligned_cols=129 Identities=22% Similarity=0.250 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH-H
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL-S 148 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll-~ 148 (392)
.-++.+..-+-.+-+..++.|.-+||+. |-+..+++...+.+..||.+.|.+|+.+..++...-+.+.+ +....|+ +
T Consensus 57 si~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~R 134 (892)
T KOG2025|consen 57 SIPDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIR 134 (892)
T ss_pred CcHHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHH
Confidence 4566677777777777888899999764 55677778888899999999999999999887766665544 3444444 4
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHH
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNL 207 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~l 207 (392)
+++. .+.||..|+.|||-+=. .+ .-.. ......+..+++. ++..||+-|+..
T Consensus 135 l~Dr--ep~VRiqAv~aLsrlQ~-d~-~dee---~~v~n~l~~liqnDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 135 LKDR--EPNVRIQAVLALSRLQG-DP-KDEE---CPVVNLLKDLIQNDPSDEVRRAALSN 187 (892)
T ss_pred Hhcc--CchHHHHHHHHHHHHhc-CC-CCCc---ccHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 4444 56899999999998752 22 1122 2344455555554 567888766543
No 132
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.09 E-value=6.9 Score=38.94 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHcCh----HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc---hHHHHhcCchH
Q 016280 157 TVRTKALGAISSLIRHNKPGIEAFRLANG----YAALRDALGSESVKFQRKALNLIQYLLNENASD---CSVVDKLGFPR 229 (392)
Q Consensus 157 ~vr~kAl~ALS~lvR~~~~~~~~f~~~gG----l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~---~~~l~~~G~v~ 229 (392)
.+..-|......+++.+......|...+- .++-..++.+.+.-.++.+..++.+++.+.+.. ...+-+..-++
T Consensus 181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLK 260 (342)
T KOG1566|consen 181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLK 260 (342)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHH
Confidence 45556666666777777777777776654 445777889999999999999999998654332 23444556788
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCC--ChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREK--ADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~--~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~ 300 (392)
.++.||+.+..++|-.|-....-.+.+- ++.+..|+..-..+|.+.+..-..... +| +.+-+|+.+
T Consensus 261 lmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~----~D-eqF~dEk~~ 328 (342)
T KOG1566|consen 261 LMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRT----ED-EQFLDEKAY 328 (342)
T ss_pred HHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCC----ch-hhhhhhHHH
Confidence 9999999999999988888777666543 356777766667777776665433332 23 445566655
No 133
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.90 E-value=0.093 Score=33.65 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.5
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 227 FPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
++|.+++++.++++.||..|+.+|..|+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478899999999999999999999999875
No 134
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=1.8 Score=47.40 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChH------------------HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLA------------------PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ 135 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~------------------~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~ 135 (392)
+.++|++=|...++++.+-++...+-.++ .++.+|.++++.++-.|+..|-++. |+|..-.
T Consensus 200 D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk 278 (948)
T KOG1058|consen 200 DPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALK 278 (948)
T ss_pred CHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHH
Confidence 34677777777777777655554433222 2333444444445544444444443 3332211
Q ss_pred HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
. +-..+++++...+|..++.-.+.-|+.+-..+... -.|-+--+.++|.++|..++.|+..+.-.|+..
T Consensus 279 ~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i-----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 279 A-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI-----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred H-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH-----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 1 22345555544444445555555555544222211 122233356788999999999999999999865
No 135
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.79 E-value=1.5 Score=44.93 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=83.4
Q ss_pred HHHHHcCChHHHH-HhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-CC--CCHHHHHHHHHH
Q 016280 93 NDLHSIGGLAPLL-GYLKNS---HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SD--PDVTVRTKALGA 165 (392)
Q Consensus 93 ~d~~~lGgl~~Ll-~lL~s~---~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~--~~~~vr~kAl~A 165 (392)
+++.+-+.++..+ ..+++. -+.|=..|+.++.++..|.|.+-..+.+.|.++.++..+. .+ ++.++....-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 3444434444444 455654 4789999999999999999999998999999999998877 43 567888888899
Q ss_pred HHHhhcCCcccHHHHHHcChHHHHHHhhcCCC
Q 016280 166 ISSLIRHNKPGIEAFRLANGYAALRDALGSES 197 (392)
Q Consensus 166 LS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d 197 (392)
|+++|-|. .+.+.|...+.+..+.+++.+++
T Consensus 179 l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 179 LSAICLNN-RGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HhHHhcCH-HHHHHHHhcChHHHHHHHhCCHH
Confidence 99999864 68999999999999999998864
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.78 E-value=6.8 Score=40.32 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=89.7
Q ss_pred HHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc--------cHHHHHH----cChHHHHHH
Q 016280 124 TTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP--------GIEAFRL----ANGYAALRD 191 (392)
Q Consensus 124 g~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~--------~~~~f~~----~gGl~~L~~ 191 (392)
|-+..++|...+ .+..|+.+|.+ +.+...|.-++.-++...+. ..+.++. .--++.|++
T Consensus 260 aLv~R~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~ 330 (415)
T PF12460_consen 260 ALVMRGHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLE 330 (415)
T ss_pred HHHHcCCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHH
Confidence 445566665544 35668888765 56778888888887766221 1111112 235666777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhh
Q 016280 192 ALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVREAALRGLLELAREKADGSA 262 (392)
Q Consensus 192 lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~ 262 (392)
..+..+...|..-..+|++++.+-|.. .+... .++|.|++-|..++.+++..++.+|..+.++.++...
T Consensus 331 ~~~~~~~~~k~~yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 331 GFKEADDEIKSNYLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHhhcChhhHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 776666668888899999999876643 33322 5789999999999999999999999999999976554
No 137
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.78 E-value=0.38 Score=45.98 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=41.3
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHH-HHHHHHcCCHHHHHHhhCCC
Q 016280 101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEPLLSNFASD 153 (392)
Q Consensus 101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~-Q~~vl~~g~l~~Ll~LL~s~ 153 (392)
+..|+++|. ..+...|+-|.-+|.++++....+ +....+.+.|..||..+...
T Consensus 174 ~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 174 FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 346677775 478899999999999999976644 45555779999999987653
No 138
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.77 E-value=0.69 Score=45.38 Aligned_cols=113 Identities=20% Similarity=0.151 Sum_probs=83.6
Q ss_pred CChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 99 GGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 99 Ggl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
+.+..|+ ..+.+.++.||+.|..|+|-++--+.+.-.. .++.++..+..+ +..++..|+.+|.-++.-|....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 4465665 7889999999999999999999876643222 366677777654 88999999999998877654321
Q ss_pred -HHH-------HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280 178 -EAF-------RLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 178 -~~f-------~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
... ....-+.++.+.+.+.+..++..|+-.++.|.-.+.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 111 1123466788888888999999999999998865443
No 139
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.47 Score=51.07 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 016280 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 216 (392)
Q Consensus 137 vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~ 216 (392)
++..|+-..++.=|.. .=-+||+.|++++..++.+.|. | ....+..|+..+..+...||.+|.++|..++.+
T Consensus 369 iI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~----F-A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-- 440 (823)
T KOG2259|consen 369 IIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPG----F-AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-- 440 (823)
T ss_pred cccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCC----c-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--
Confidence 4444555555554332 2347999999999999987763 2 233788999999999999999999999999865
Q ss_pred cchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280 217 SDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252 (392)
Q Consensus 217 ~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~ 252 (392)
..++...++.+...|.+...++|+.....|.+
T Consensus 441 ----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 441 ----LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred ----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 23344456677777777777888776666654
No 140
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.73 E-value=2.7 Score=48.05 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=112.6
Q ss_pred cCChHHHH-Hhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC
Q 016280 98 IGGLAPLL-GYLK----NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 98 lGgl~~Ll-~lL~----s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~ 172 (392)
+|-+.|++ ...+ .+++++|..|.-++|.+.--.. + |.+ -.+|.|+..+...+++.+|.+++-|++-++--
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~-fce-s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---E-FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---H-HHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 56676666 4553 3589999999999999874322 1 222 24888999999888999999999999988776
Q ss_pred CcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280 173 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252 (392)
Q Consensus 173 ~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~ 252 (392)
+|.-.+.+ -+.|.+-|+..+..+|+.|.-.|++|...+ .+.--|.+.-+..+|.+++..+++-|=...-.
T Consensus 992 fpnlie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 992 FPNLIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred cccccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 76555444 234677788899999999999999999753 44455999999999999999999999877777
Q ss_pred HHcCCC
Q 016280 253 LAREKA 258 (392)
Q Consensus 253 L~~~~~ 258 (392)
|+..+.
T Consensus 1062 ls~k~n 1067 (1251)
T KOG0414|consen 1062 LSSKGN 1067 (1251)
T ss_pred hhhccc
Confidence 766654
No 141
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.73 E-value=3.3 Score=41.62 Aligned_cols=182 Identities=14% Similarity=0.208 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC---hHHH
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN---GYAA 188 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g---Gl~~ 188 (392)
++++--.+-.+|..|+...+ +-+.++....+-.+.+.+.. ++-++..-|...+..+...|+.....|+..+ =+..
T Consensus 136 ~~dial~~g~mlRec~k~e~-l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~ 213 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKHES-LAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK 213 (335)
T ss_dssp STTTHHHHHHHHHHHTTSHH-HHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred CccccchHHHHHHHHHhhHH-HHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 55666778888888988744 55568888888888887665 5789999999999998877777777777654 3456
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH----HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhh
Q 016280 189 LRDALGSESVKFQRKALNLIQYLLNENASDCSV----VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSA 262 (392)
Q Consensus 189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~----l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~ 262 (392)
...+|.|++--.|+.++-+|+.|+.+ +.+... +.+..-+..++.||++....+|-.|..+.--.+.+.. +.+.
T Consensus 214 ~~~Ll~s~NYvtkrqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 214 YNKLLESSNYVTKRQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHCT-SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred HHHHccCCCeEeehhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 78889999999999999999999964 555443 3344678899999999999999999988877766543 2222
Q ss_pred hhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 016280 263 IKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLV 301 (392)
Q Consensus 263 ~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~ 301 (392)
.. +..=|+.|-.-+..... +..|-+.+.+|++++
T Consensus 293 ~i----L~~Nr~kLl~fl~~f~~-~~~~D~qf~~EK~~l 326 (335)
T PF08569_consen 293 DI----LIKNREKLLRFLKDFHT-DRTDDEQFEDEKAYL 326 (335)
T ss_dssp HH----HHHTHHHHHHHHHTTTT-T--S-CHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHhCCC-CCCccccHHHHHHHH
Confidence 11 11112222223333221 231336788888774
No 142
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.69 E-value=2.5 Score=47.19 Aligned_cols=156 Identities=18% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHhhC-CccH--HHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHH
Q 016280 28 LSEEDRRWFMEAMQSQ-TVDV--IKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPL 104 (392)
Q Consensus 28 ~s~E~~~~L~~Al~~~-~~D~--~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~L 104 (392)
-|.|-.-.|+||+..+ +.|. ...|++.+.=+ .....-....+|--...+.+.+.++++..+|...++..- +|.+
T Consensus 542 ~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~--~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~-iPsl 618 (1005)
T KOG2274|consen 542 SSDEVLVLLMEALSSVVKLDPEFAASMESKICPL--TINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERL-IPSL 618 (1005)
T ss_pred ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHH--HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHH-HHHH
Confidence 3566777777777775 3443 22344322100 001111122355555667788888888777777766543 8999
Q ss_pred HHhhcCCC----HHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 105 LGYLKNSH----ANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 105 l~lL~s~~----~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
+..|..+. +.+...|+.+|.++..|-|. .-+.++ +-++|++.++.-...|..+-..+--|+++++....+....
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHh
Confidence 99998776 88999999999999998542 222233 3479999998776667788899999999999765544444
Q ss_pred HHHcChHH
Q 016280 180 FRLANGYA 187 (392)
Q Consensus 180 f~~~gGl~ 187 (392)
....+|..
T Consensus 698 ~~~e~g~~ 705 (1005)
T KOG2274|consen 698 WHDEPGHN 705 (1005)
T ss_pred hccCCCcc
Confidence 44455544
No 143
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=1.6 Score=47.54 Aligned_cols=143 Identities=10% Similarity=0.115 Sum_probs=90.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
.+|.|..-|..+++.|+..|..+|..+|.-||+. ++. .-|.+..++.+..+..+..|.+--.++++---|...+
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn---yL~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK- 255 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN---YLQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK- 255 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc---ccc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-
Confidence 4666777788899999999999999999999954 332 3466778877767788999999999998865554333
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHH---------hhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYL---------LNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 250 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L---------~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL 250 (392)
.-++.|..++.++. |..+|+-. ..+.+.+. ..++ =.+..|-.++.+.|++++--.|-++
T Consensus 256 ----KLieplt~li~sT~------AmSLlYECvNTVVa~s~s~g~~d~~-asiq-LCvqKLr~fiedsDqNLKYlgLlam 323 (877)
T KOG1059|consen 256 ----KLIEPITELMESTV------AMSLLYECVNTVVAVSMSSGMSDHS-ASIQ-LCVQKLRIFIEDSDQNLKYLGLLAM 323 (877)
T ss_pred ----hhhhHHHHHHHhhH------HHHHHHHHHHHheeehhccCCCCcH-HHHH-HHHHHHhhhhhcCCccHHHHHHHHH
Confidence 34667777777642 33333222 21111111 1111 0133444455566666776666666
Q ss_pred HHHHcCCChh
Q 016280 251 LELAREKADG 260 (392)
Q Consensus 251 ~~L~~~~~~~ 260 (392)
..|....++.
T Consensus 324 ~KI~ktHp~~ 333 (877)
T KOG1059|consen 324 SKILKTHPKA 333 (877)
T ss_pred HHHhhhCHHH
Confidence 6666666543
No 144
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.47 E-value=0.33 Score=43.30 Aligned_cols=146 Identities=17% Similarity=0.214 Sum_probs=97.6
Q ss_pred ChHHHHHhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 100 GLAPLLGYLK--NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 100 gl~~Ll~lL~--s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
.+..++..|. ...+++|..|.-+++.+- +..++.+.+. +...+..+..+.+..-...++.+++.+--..+...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 3556676654 467889999999999884 4444444332 44444433222223367889999999987766554
Q ss_pred HHH-HHcChHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChH-HHHHHHHHHHH
Q 016280 178 EAF-RLANGYAALRDALG--SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPD-VREAALRGLLE 252 (392)
Q Consensus 178 ~~f-~~~gGl~~L~~lL~--s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~-v~E~aL~aL~~ 252 (392)
..+ ...|-.+.+...+. +++..++..++.+|+.=|.. ..+..++...+++.|-.+++ +++.. ++..|+-.|..
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 444 45667778888888 78999999999999988753 44444555556888888885 45555 77777766653
No 145
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.84 Score=51.66 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH----cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHH
Q 016280 115 IRAKAGEVVTTIVQNNPRSQQLVME----ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR 190 (392)
Q Consensus 115 IR~~Aa~vLg~iaqNNp~~Q~~vl~----~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~ 190 (392)
=-..+..+|.|+..-||.....|-. .|.++-++..+....+..++.-|+..|+-+. .+.+....+...|.+..|.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHH
Confidence 3456889999999999965443322 2677778888887778889999998887765 4567788888899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280 191 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 191 ~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+|+|- +..|..++..|+.|++. +.......+.|.+..+..++. +.+.+.|..++..|..++.+.-
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 999874 67788999999999865 444445566676666666554 6788999999999999988664
No 146
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.34 E-value=1.7 Score=46.16 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHH
Q 016280 50 RMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTT 125 (392)
Q Consensus 50 ~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~----~~IR~~Aa~vLg~ 125 (392)
--+.+++++..+. ...+..++-.|..+.-+.-.|.+|+++.|+..|..++.+.. .++......+...
T Consensus 84 ~a~~i~e~l~~~~---------~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~e 154 (713)
T KOG2999|consen 84 YAKRIMEILTEGN---------NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSE 154 (713)
T ss_pred HHHHHHHHHhCCC---------cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 3455666654432 23344488889998888889999999999999999998754 3455555555544
Q ss_pred HhhCCHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHH
Q 016280 126 IVQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKA 204 (392)
Q Consensus 126 iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA 204 (392)
+....-..-+ .+...++.....+.. +-.+..+-..|+.-+-+++-+.......+...--+.-|++.++..+.+++..|
T Consensus 155 lmehgvvsW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~a 233 (713)
T KOG2999|consen 155 LMEHGVVSWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCA 233 (713)
T ss_pred HHhhceeeee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHH
Confidence 4433221111 111122333333321 11244677788888888888877667777778889999999999999999999
Q ss_pred HHHHHHHhhcCCcc
Q 016280 205 LNLIQYLLNENASD 218 (392)
Q Consensus 205 ~~lLs~L~~~~~~~ 218 (392)
..++..|....+++
T Consensus 234 ial~nal~~~a~~~ 247 (713)
T KOG2999|consen 234 IALLNALFRKAPDD 247 (713)
T ss_pred HHHHHHHHhhCChH
Confidence 99999998776665
No 147
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.32 E-value=2.2 Score=49.95 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc
Q 016280 115 IRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG 194 (392)
Q Consensus 115 IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~ 194 (392)
-...|.|+.-.++++.|..|.. .+.+..++..|.+ +...+|.||+-|||.++.-.+.-. .....-..+-+=+.
T Consensus 793 d~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLN 865 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhc
Confidence 4567888888899998877652 2457777777775 678999999999999986544211 11112222333344
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 195 SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 195 s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
.....||..|+-++...+...++.... +-..+.+=+.++...||.+|++.|..++...|.+
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 566899999999999777655554322 2345566667788999999999999999999866
No 148
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.15 E-value=0.31 Score=42.99 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=62.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+..|.+=|.+.++.++.+|..+|-+|++|.. .++..|.....+..|+.++....+..|+.+++..|-.-...++
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5666777889999999999999999999976 6777788888999999998775788999999998888766554
No 149
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=92.98 E-value=2.1 Score=42.60 Aligned_cols=159 Identities=21% Similarity=0.185 Sum_probs=93.0
Q ss_pred HHHHHHhhCCCC---CHHHHHHHHHHHHHhhcCCcccHHHHHH---------c---ChHHHHHHhhc-----CCCHHHHH
Q 016280 143 LEPLLSNFASDP---DVTVRTKALGAISSLIRHNKPGIEAFRL---------A---NGYAALRDALG-----SESVKFQR 202 (392)
Q Consensus 143 l~~Ll~LL~s~~---~~~vr~kAl~ALS~lvR~~~~~~~~f~~---------~---gGl~~L~~lL~-----s~d~kl~~ 202 (392)
+-.|+.+.-... ...+|..|+|++-|.+.+|+.++..|+. . .+-.++..++. +.|+---=
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 444555433333 5689999999999999999999999872 1 11123333342 22332223
Q ss_pred HHHHHHHHHhhcCCcchHHHHhc------------CchHHHHHhhc-----CCChHHHHHHHHHHHHHHcCCChhhhhhh
Q 016280 203 KALNLIQYLLNENASDCSVVDKL------------GFPRLMLHLAS-----SEDPDVREAALRGLLELAREKADGSAIKL 265 (392)
Q Consensus 203 kA~~lLs~L~~~~~~~~~~l~~~------------G~v~~Lv~LL~-----~~d~~v~E~aL~aL~~L~~~~~~~~~~~~ 265 (392)
-|+.++.|++.+++..++.+.+- -.++.+..+|. ..++.++---|..|..-.-+++..+.+.+
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL 195 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFL 195 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 58889999999888887765432 24566666554 34666777778888888888887665542
Q ss_pred hhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280 266 AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN 310 (392)
Q Consensus 266 ~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~ 310 (392)
+.-..+..++.. +.+.+.+| .+- ..+|.-|+-+||-
T Consensus 196 -~~~s~l~~Li~~----~~~~~~~~--~~V--qGL~A~LLGicye 231 (312)
T PF04869_consen 196 -SEGSNLQSLIEF----SNQSSSED--VLV--QGLCAFLLGICYE 231 (312)
T ss_dssp -CSTTHHHHHHHH----HS--TCCC--HHH--HHHHHHHHHHHHH
T ss_pred -cCcchHHHHHHH----hhcCCCCc--chH--HHHHHHHHHHHHH
Confidence 333344444444 22222222 111 4789999999985
No 150
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.92 E-value=1.4 Score=47.87 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=104.8
Q ss_pred HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 96 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 96 ~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
++-..++.|...+++.+..++..+..++.+++.-=+ ..+++.-.+|.|-.+....++..++..++-|+..++ .
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----Q 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----H
Confidence 345667888889999999999999999999986433 345566678888777666678899999999999999 3
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHH
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV 242 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v 242 (392)
..+.+....-+..+.++.++.++.+......+...+....+.. ..+....++|.++.+...+...+
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccH
Confidence 4556656677788888888999999998888888877554443 34555677787777766544333
No 151
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.80 E-value=2.9 Score=46.76 Aligned_cols=171 Identities=22% Similarity=0.230 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCC---hHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHH
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGG---LAPLLGY-LKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPL 146 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGg---l~~Ll~l-L~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~L 146 (392)
-.++.++|+.+-..+++ +.--...|. +-.++.. +...+..+-..|+.+|.-+|.-.. .++.. ..+.++.|
T Consensus 267 WK~R~Eale~l~~~l~e---~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~--~~~v~p~l 341 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEE---AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY--AKNVFPSL 341 (815)
T ss_pred hHHHHHHHHHHHHHHhc---cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH--HHhhcchH
Confidence 35666777777777664 432222222 3333433 345788899999999999997654 33332 23678888
Q ss_pred HHhhCCCCCHH---HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHH
Q 016280 147 LSNFASDPDVT---VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVV 222 (392)
Q Consensus 147 l~LL~s~~~~~---vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~~~~l 222 (392)
+.-+..- -.. +.++++-++++.+ + ...-.+.+..++...+++++..+..++...+.... .....-
T Consensus 342 ld~lkek-k~~l~d~l~~~~d~~~ns~---~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 342 LDRLKEK-KSELRDALLKALDAILNST---P-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred HHHhhhc-cHHHHHHHHHHHHHHHhcc---c-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 8877642 333 4445555555511 1 12245667888999999999997777777765433 323333
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.-.++++.++....+.+.+||..|+.++..+.....
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 334678888888889999999999999988766554
No 152
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.70 E-value=0.3 Score=42.90 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=61.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCC
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~ 173 (392)
++..|.+-|++.++.+..+|..+|-+|++|. +.++..|...+.+..|++++.. .++..|+.+.+..|-.-...+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4666778889999999999999999999997 5788889888999999999853 357899999988776655444
No 153
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.66 E-value=11 Score=39.46 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
..++++.|+.+|..+.. +----.+=+-...+..++..|.. .+..+|..|..+|+.++.|.|..-..-.+ -++.++++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence 34666777776655544 32222221112234556677765 78899999999999999988743221112 35667777
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--C
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--G 226 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G 226 (392)
.-. +++..|-+.|.-+.+-++..+.+-+. +..+..++.+.|...-.-+...+..|+.. -.++.+... .
T Consensus 379 aa~-ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~d 448 (516)
T KOG2956|consen 379 AAK-DSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFER--LSAEELLNLLPD 448 (516)
T ss_pred HHh-CCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhh--cCHHHHHHhhhh
Confidence 633 34455555555554444433333222 33455666666666555566666777643 333433332 6
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 227 FPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.|.+++--.+....||..|..+|..++..-
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 7788888888999999999999998887644
No 154
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.65 E-value=9 Score=40.89 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=116.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC---CHHHHHHHHHHHHHhhcCCcccHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP---DVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~---~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
..+...+.+++..-|..|..-+..+..+. ..-+.|+...++..|.+++.++. ..++..-.+.|+|.+.-|.-.+..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 34667888888888888999999888764 45566899999999999987653 346778888899988876544333
Q ss_pred HHHHcChHHHHHHh--hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 179 AFRLANGYAALRDA--LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 179 ~f~~~gGl~~L~~l--L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
.+ ...++.-...+ .+..+..+-..|+..|-.++.......+.+.+.--+..|+..+...+..++..|+..|-.+...
T Consensus 165 ~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 32 22222222222 2234567777899999999887777777888888899999999999999999998888888777
Q ss_pred CChh
Q 016280 257 KADG 260 (392)
Q Consensus 257 ~~~~ 260 (392)
.+..
T Consensus 244 a~~~ 247 (713)
T KOG2999|consen 244 APDD 247 (713)
T ss_pred CChH
Confidence 7643
No 155
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.30 E-value=2.9 Score=42.06 Aligned_cols=164 Identities=12% Similarity=0.124 Sum_probs=118.4
Q ss_pred ChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHH
Q 016280 91 MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEA--NGLEPLLSNFASDPDVTVRTKAL 163 (392)
Q Consensus 91 nA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-----~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl 163 (392)
.+..+++.+.+..|+..|..-+-+.|..++.+.+++....+ .+.+.+..+ ..+..|+.-..+ +++...+-
T Consensus 68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g 144 (335)
T PF08569_consen 68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCG 144 (335)
T ss_dssp HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHH
T ss_pred HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHH
Confidence 46678888989999999999999999999999999875421 233444433 345555554433 33445555
Q ss_pred HHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchHHHHHhhcCCCh
Q 016280 164 GAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPRLMLHLASSEDP 240 (392)
Q Consensus 164 ~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~---G~v~~Lv~LL~~~d~ 240 (392)
.-|--++|+. .....++...-+.-+....+.++-.+...|...+..|++.++.....+... .++.....||.+++.
T Consensus 145 ~mlRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY 223 (335)
T PF08569_consen 145 DMLRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY 223 (335)
T ss_dssp HHHHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred HHHHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 5566666663 334455566777778888999999999999999999998777665555554 356778889999999
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 016280 241 DVREAALRGLLELAREKA 258 (392)
Q Consensus 241 ~v~E~aL~aL~~L~~~~~ 258 (392)
-.+.+++..|+.|..+..
T Consensus 224 vtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp HHHHHHHHHHHHHHHSGG
T ss_pred EeehhhHHHHHHHHHchh
Confidence 999999999999987765
No 156
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=5.6 Score=42.42 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=115.7
Q ss_pred HHHhhcCCCChHHHHHcC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHH
Q 016280 82 LQEHVESIDMANDLHSIG-GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRT 160 (392)
Q Consensus 82 L~~lve~iDnA~d~~~lG-gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~ 160 (392)
|.++...|++.-...+.+ .++.++.-+.++++.+|..|..-|-..++--+.. -...-.|.+..++.++.+.+....+.
T Consensus 232 l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 232 LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHH
Confidence 445555565655554433 4677788999999999999988888777754422 22223466777777766543322333
Q ss_pred HH---HHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC
Q 016280 161 KA---LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS 237 (392)
Q Consensus 161 kA---l~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~ 237 (392)
.| -.-+..++.... ..+.|--..-+.+|.+.+.++....|..++.-+..|.+..+. .-......+.+.|+.-|.+
T Consensus 311 ~a~~~n~~l~~l~s~~~-~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSER-LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSD 388 (675)
T ss_pred HHHHHHHHHHHHHhhhh-hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcC
Confidence 22 112333332221 122232234677888999999999999999999999865443 2233344678889999999
Q ss_pred CChHHHHHHHHHHHHHHcCCCh
Q 016280 238 EDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 238 ~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.+..|...+|..+.+++.+...
T Consensus 389 ~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 389 RSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred chhHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999997763
No 157
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.20 E-value=9 Score=40.34 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=120.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCH---HHHHHHHHcCCHHHHHHhhCCC------CCHHHHHHHHHHHHHhhcCCc
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNP---RSQQLVMEANGLEPLLSNFASD------PDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp---~~Q~~vl~~g~l~~Ll~LL~s~------~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+..++...+.+-|..|.-.+..++.|.. ..+..+++.-|++-+=++|.+. ++...+.-++.-|.|.||.-+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5677777788889999999999998743 5556677876665555555432 345677888899999999755
Q ss_pred ccHHHHHHcChHHHHHHhhcCC-C------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHH-HHHH
Q 016280 175 PGIEAFRLANGYAALRDALGSE-S------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDV-REAA 246 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~lL~s~-d------~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v-~E~a 246 (392)
-+...- ..+.||.|..++... | .-+...+-..|..+++. +.....++..|.++.+.+.-.-++... ++-+
T Consensus 96 lAsh~~-~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEE-MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHH-HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 443322 346789888888642 2 22555666666666654 667778999999999987644333322 2333
Q ss_pred HHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHH--HHHHHHHHHHhCCCccc
Q 016280 247 LRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREER--HLVDSLWNACYNEPSSL 315 (392)
Q Consensus 247 L~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~--~~~~~L~~~~f~~~~~~ 315 (392)
+..+.-++.... |-..+...|..++..--. |++..-.++ |+|.-|-.++|.+++++
T Consensus 174 l~Vlll~~~~~~-----cw~e~~~~flali~~va~--------df~~~~~a~KfElc~lL~~vl~~~~~e~ 231 (698)
T KOG2611|consen 174 LKVLLLLVSKLD-----CWSETIERFLALIAAVAR--------DFAVLHNALKFELCHLLSAVLSSEYSEL 231 (698)
T ss_pred HHHHHHHHHhcc-----cCcCCHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHHhCChHHh
Confidence 333332332221 112333444444332222 222233333 55888888888887655
No 158
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=92.18 E-value=10 Score=37.83 Aligned_cols=157 Identities=19% Similarity=0.109 Sum_probs=99.8
Q ss_pred CChHHHHHh-hcC---CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-------CC----HHHHHHhhC---C--CCCHHH
Q 016280 99 GGLAPLLGY-LKN---SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-------NG----LEPLLSNFA---S--DPDVTV 158 (392)
Q Consensus 99 Ggl~~Ll~l-L~s---~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-------g~----l~~Ll~LL~---s--~~~~~v 158 (392)
..+..|+.+ |.. ..-.+|..|+.|+-....+|+..|.+|++. +. ...|+.-|. . ..|+--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 334555543 332 357899999999999999999999999975 11 123554433 1 124444
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHc------Ch------HHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLA------NG------YAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~------gG------l~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
-..|...++.++++++.+++....- .| ++.+..+|.. .+.+++.--+.+|..-+.+++.....
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 5688999999999998877665422 22 3335554433 46788887788888888888887777
Q ss_pred HHhcC-chHHHHHhhc---CCChHHHHHHHHHHHHHHc
Q 016280 222 VDKLG-FPRLMLHLAS---SEDPDVREAALRGLLELAR 255 (392)
Q Consensus 222 l~~~G-~v~~Lv~LL~---~~d~~v~E~aL~aL~~L~~ 255 (392)
|...| .++.|+.... +.+.-+|--++-.|+-+..
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 77665 7899998754 3455566666666666554
No 159
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.14 E-value=0.89 Score=39.31 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=61.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCC--CCCHHHHHHHHHHHHHhhcCCc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFAS--DPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s--~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+..|-+-|+++++.++..|..+|-.|+.|... ++..|.....+..|+.++.. ..+..|+.+++..|-+-...++
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56677788999999999999999999999854 88878887788889998876 4678999999998887766554
No 160
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.91 E-value=1.7 Score=37.49 Aligned_cols=95 Identities=22% Similarity=0.213 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS 237 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~ 237 (392)
-......|+-+++..+.+.. .++..|.+-|+++++.++..|+.+|-.++.+... ....+....++..|+.++..
T Consensus 17 D~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 17 DWALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred cHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 35667788888887644333 3677888889999999999999999999977555 34555666788889998874
Q ss_pred ---CChHHHHHHHHHHHHHHcCCC
Q 016280 238 ---EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 238 ---~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+..|+++++..|...+....
T Consensus 92 ~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 92 SPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 578899999999998776554
No 161
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=13 Score=41.66 Aligned_cols=173 Identities=19% Similarity=0.142 Sum_probs=116.7
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC-
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP- 154 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~- 154 (392)
-.++..|..++|+-+-+.-+...+.+...+..|++.++-|=-.|...+.++|. +.....+|.|.....+.+
T Consensus 745 ~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce--------vy~e~il~dL~e~Y~s~k~ 816 (982)
T KOG4653|consen 745 GYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE--------VYPEDILPDLSEEYLSEKK 816 (982)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH--------hcchhhHHHHHHHHHhccc
Confidence 46788999999988777777788999999999999998888888888877774 345567888887554332
Q ss_pred --CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHH
Q 016280 155 --DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-SVVDKLGFPRLM 231 (392)
Q Consensus 155 --~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~L 231 (392)
.+..+.+.=-||-.+++--.+-...+.. --+....+...+++...|..++..+..||+-..-.. +.+. .++..+
T Consensus 817 k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~I 893 (982)
T KOG4653|consen 817 KLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLI 893 (982)
T ss_pred CCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 1345556667777776643332222222 233444555667788999999999999986432111 1111 223444
Q ss_pred HHhhc-CCChHHHHHHHHHHHHHHcCCCh
Q 016280 232 LHLAS-SEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 232 v~LL~-~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
+.+.+ ++...+|..|+..|..+..+..+
T Consensus 894 l~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 894 LSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 55555 45577889999988888776653
No 162
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=6.2 Score=44.53 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC------C-CCHHHHHHHHHHHHHhhc---CCcc---cHHHHHH
Q 016280 117 AKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS------D-PDVTVRTKALGAISSLIR---HNKP---GIEAFRL 182 (392)
Q Consensus 117 ~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s------~-~~~~vr~kAl~ALS~lvR---~~~~---~~~~f~~ 182 (392)
.+|..++-+++... ++.=. |.++-+++.|.+ + .+..-+--|+.++|++++ ...+ -.+.|+
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~-----k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl- 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLP-----KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL- 463 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhh-----hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH-
Confidence 36777787777543 22211 344555555551 1 234455567888887763 2222 223343
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCCh
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
+..+...++|+---+|.||||.++.++..+=.+...+ ..+++....+|. +.+-.|+-.|+-||..+..++.+
T Consensus 464 ---v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 464 ---VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred ---HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 3344455678889999999999999995433333222 234566667776 78889999999999999888864
No 163
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.85 E-value=1.3 Score=48.46 Aligned_cols=168 Identities=17% Similarity=0.089 Sum_probs=99.8
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChH-HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY-AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG 226 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl-~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G 226 (392)
..|.+ +++.+|..|+-.+|+++.--... ..+...|-+ -+|..-|....+.+.--.+.+|..++....-.+-.=--.+
T Consensus 806 ~rLnn-ksa~vRqqaadlis~la~Vlktc-~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 806 WRLNN-KSAKVRQQAADLISSLAKVLKTC-GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HHhcC-CChhHHHHHHHHHHHHHHHHHhc-cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 33444 56788888888888875422111 111112212 2456667777788877777777777643211111001137
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh--hhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHH---HHH
Q 016280 227 FPRLMLHLASSEDPDVREAALRGLLELAREKADG--SAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREER---HLV 301 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~--~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~---~~~ 301 (392)
++|.|..+|++.+..+++.+...++.|+...+.. .++. -..--+|.++|....+.|+.---+-+.....-+ ++.
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL 962 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL 962 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence 8999999999999999999999999999998853 2222 122267777887777776641111122222211 455
Q ss_pred HHHHHHHhCCCcccccc
Q 016280 302 DSLWNACYNEPSSLRDK 318 (392)
Q Consensus 302 ~~L~~~~f~~~~~~~~~ 318 (392)
.+|++-+-.+.-+.|-.
T Consensus 963 atLlnnLkvqeRq~Rvc 979 (1172)
T KOG0213|consen 963 ATLLNNLKVQERQNRVC 979 (1172)
T ss_pred HHHHhcchHHHHHhchh
Confidence 66666655555555544
No 164
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=4 Score=43.48 Aligned_cols=141 Identities=19% Similarity=0.137 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhhC--CHHHHHHHHHcCC-HHHHHHh
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHA-NIRAKAGEVVTTIVQN--NPRSQQLVMEANG-LEPLLSN 149 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~-~IR~~Aa~vLg~iaqN--Np~~Q~~vl~~g~-l~~Ll~L 149 (392)
-...|+-=|.++|.-.-++--..-.|.+..++.++.+++. .++..|..+-+.+..- .+...+. ++.|. +..|.+.
T Consensus 266 iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~ 344 (675)
T KOG0212|consen 266 IQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKY 344 (675)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHH
Confidence 3456777777777765555555556777888888877655 6888887776544331 1111111 33343 3445555
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
+.+ ...+.|..++-=|.-+-+..+ ++-......-++.|..-|...+..+-.+++++++++|.+...
T Consensus 345 l~~-~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 345 LSD-DREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hhc-chHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 554 467899999999999887654 454444667888999999999999999999999999976444
No 165
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.64 E-value=13 Score=44.07 Aligned_cols=108 Identities=18% Similarity=0.274 Sum_probs=77.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH-HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~-vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
+..++..|..+...+|..|..||+.++.-.|.+.-. -++.++...+ .|....||..|+--++-.+-.++....+
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~-----~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL-----NDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh-----ccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 455667888899999999999999999866633110 0111222222 2346789999999999888777766655
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
+ +..|..-...+...||.+|...++.+|.+.|..
T Consensus 893 y-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 893 Y-----YDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred H-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 5 344555566677999999999999999887765
No 166
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.53 E-value=9 Score=41.15 Aligned_cols=176 Identities=14% Similarity=0.060 Sum_probs=105.2
Q ss_pred ChHHHHHh----hcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 100 GLAPLLGY----LKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 100 gl~~Ll~l----L~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
.+.|++.+ +++++=.=|+.|+.++|.+... +..+.-.+ -..++|.++.+ .+|+...++..+.||++.+..+-+
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~-m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENE-MSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHh-cccceeehhhHHHHHHHHHHHHHH
Confidence 34555544 4566777899999999999875 33443333 34688888877 557788899999999999886543
Q ss_pred ccHHHHHHcChHHHHHHh-hc--CCCHHHHHHHHHHHHHHhhcCCcch---HHHHhc---CchHHHHHh--hcCCChHHH
Q 016280 175 PGIEAFRLANGYAALRDA-LG--SESVKFQRKALNLIQYLLNENASDC---SVVDKL---GFPRLMLHL--ASSEDPDVR 243 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~l-L~--s~d~kl~~kA~~lLs~L~~~~~~~~---~~l~~~---G~v~~Lv~L--L~~~d~~v~ 243 (392)
.... ..|-++..++. +. .+.+++-...+|..-+|+.+-+... .-+.-. .++..|+.- +...+.+.|
T Consensus 441 ~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R 517 (858)
T COG5215 441 MIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLR 517 (858)
T ss_pred HhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHH
Confidence 2221 22333332222 21 2468888999999999986533221 111111 122223222 124567889
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHH
Q 016280 244 EAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERI 280 (392)
Q Consensus 244 E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~ 280 (392)
...-++|+.+..-+++.+.+.+.+...-....|.+-+
T Consensus 518 ~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~i 554 (858)
T COG5215 518 VSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECI 554 (858)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999888886655443333333333344333
No 167
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=91.25 E-value=4.3 Score=43.43 Aligned_cols=173 Identities=17% Similarity=0.094 Sum_probs=108.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.+-+.++++++...-|.-|++.++.++.++.-. .+.+.+.+..|-...........|..++.|.-+.+.+-.+..+..
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy 213 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY 213 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence 345567888888889999999999999877633 355667777777765543333444456666666665533222221
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
...-++.+.....+...++|..|..+...+...-+... ++ -+++.++.-+....-.-..+++..|+.++..-+..
T Consensus 214 -iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 214 -IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred -HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 22345555555666789999999999988876432211 11 12333333233334455678889999999998877
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 016280 261 SAIKLAEDNEKLKQLLGERI 280 (392)
Q Consensus 261 ~~~~~~~~~~~L~~~L~~~~ 280 (392)
...|+....+.+.+.|..-.
T Consensus 289 Ls~~lp~iiP~lsevl~DT~ 308 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTK 308 (569)
T ss_pred HHHHHhHhhHHHHHHHccCC
Confidence 66665666666666655433
No 168
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=2.5 Score=46.58 Aligned_cols=140 Identities=18% Similarity=0.261 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHc---------------CCH--HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEA---------------NGL--EPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~---------------g~l--~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+|=++.+...+|+-+-||++..-+.+-.- ++| .....++.-.++..+|+.|+-+|+-.+-+..
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 56677777777777777766555432210 011 1111122223456799999999998887765
Q ss_pred ccHHHHH----------HcChH----HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCCh
Q 016280 175 PGIEAFR----------LANGY----AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDP 240 (392)
Q Consensus 175 ~~~~~f~----------~~gGl----~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~ 240 (392)
.+.+.+. +..++ ..++.||+.+|..+|++|.-++..|+.++ +.. .+++.|+..|.+.+.
T Consensus 327 ~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-----~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 327 NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-----VMVKELLEFLESSDE 399 (866)
T ss_pred cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-----HHHHHHHHHHHhccH
Confidence 5543321 11111 24678888999999999999999888543 222 234556666766677
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 016280 241 DVREAALRGLLELAREKA 258 (392)
Q Consensus 241 ~v~E~aL~aL~~L~~~~~ 258 (392)
+++..++.-+..++....
T Consensus 400 ~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFA 417 (866)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 777766666666655443
No 169
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.07 E-value=3.5 Score=39.35 Aligned_cols=182 Identities=20% Similarity=0.266 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhhcCC-CChHHHHHcCChHHHH-H-------hhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Q 016280 75 IEDMLDELQEHVESI-DMANDLHSIGGLAPLL-G-------YLKN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEAN 141 (392)
Q Consensus 75 ~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll-~-------lL~s----~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g 141 (392)
+|.+|++|-+--++. |.|-.+-..-|++..+ . +|+- ....=|..-+-.|-.|....|+.+..|++..
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ah 141 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAH 141 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecc
Confidence 456888887777766 6787777766665432 2 2221 1222343334444445556799988888775
Q ss_pred C---HHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 016280 142 G---LEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENA 216 (392)
Q Consensus 142 ~---l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~ 216 (392)
. +-+.+...++ .+-+.+|..+++.|++++.+..+-...|+ ....+|.+.+++...++--|.-|.|.+..++-++.
T Consensus 142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch
Confidence 3 2334444333 34567999999999999999877766665 56899999999999998889999999888875433
Q ss_pred cc---hHHHHhcC----chHHHH-HhhcCCChHHHHHHHHHHHHHHcC
Q 016280 217 SD---CSVVDKLG----FPRLML-HLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 217 ~~---~~~l~~~G----~v~~Lv-~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
.. ++.+...- ++..++ ++...+...+..+++++-..++.+
T Consensus 222 GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 222 GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 21 22222222 222332 233455666777777766655443
No 170
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.06 E-value=4.1 Score=43.65 Aligned_cols=188 Identities=13% Similarity=-0.010 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC------------------H
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN------------------P 131 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN------------------p 131 (392)
+.+-...++-+|..+.. ..+.-.-..+--......+.+++++.+|..+|..-.++++... -
T Consensus 234 d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~ 313 (858)
T COG5215 234 DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHG 313 (858)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcc
Confidence 34445566777666554 1122222222222344457889999999999999998877421 1
Q ss_pred HHHHHHHHcCCHHHHHHhhCC-CCC----H-HHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHH
Q 016280 132 RSQQLVMEANGLEPLLSNFAS-DPD----V-TVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205 (392)
Q Consensus 132 ~~Q~~vl~~g~l~~Ll~LL~s-~~~----~-~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~ 205 (392)
..+.. -.+++|.|++||.+ ++| . .+-..|..+|--... ....-+-...+..+.+-+++++-.-+..|+
T Consensus 314 fa~aa--v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq----~~gd~i~~pVl~FvEqni~~~~w~nreaav 387 (858)
T COG5215 314 FARAA--VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ----LKGDKIMRPVLGFVEQNIRSESWANREAAV 387 (858)
T ss_pred hHHHH--HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH----HhhhHhHHHHHHHHHHhccCchhhhHHHHH
Confidence 11111 12478999999875 221 1 232333222221111 111112334666677778888888899999
Q ss_pred HHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh
Q 016280 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 264 (392)
Q Consensus 206 ~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~ 264 (392)
.++.++.++....+-.-.-...+|.+..+..++..-+.+.++.+++.|+.+-+.....|
T Consensus 388 mAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~ 446 (858)
T COG5215 388 MAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC 446 (858)
T ss_pred HHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc
Confidence 99999987654444333334567777777777788899999999999988776444333
No 171
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.05 E-value=2.8 Score=44.78 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
+.-||..|+.|||-..-+-. ..|........|.+|+...|..+|.+|.|++.++-
T Consensus 500 N~ivRsaAv~aLskf~ln~~---d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 500 NNIVRSAAVQALSKFALNIS---DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhHHHHHHHHHHHHhccCcc---ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 45688899999987665422 23334445678999999999999999999999985
No 172
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.00 E-value=14 Score=37.89 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=108.5
Q ss_pred HHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCC----------------------------------HHHHHHHHH
Q 016280 77 DMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSH----------------------------------ANIRAKAGE 121 (392)
Q Consensus 77 ~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~----------------------------------~~IR~~Aa~ 121 (392)
+|+..|+-++...-+ ...|..+||+..++..|...- ..+.+.-..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 345555555655533 577888888888876654210 112223334
Q ss_pred HHHHHhh---CCHHHHHHHHHcCCHHH-HHHhhCCCC--CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-
Q 016280 122 VVTTIVQ---NNPRSQQLVMEANGLEP-LLSNFASDP--DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG- 194 (392)
Q Consensus 122 vLg~iaq---NNp~~Q~~vl~~g~l~~-Ll~LL~s~~--~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~- 194 (392)
.|..+.+ ++...-..+++.+.++. |-.++.+.. ...+-..|+..++.++.+.|.....+.+.|-.+.+...+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 5555555 33333333555344433 444444422 3568888999999999888888888888888888888887
Q ss_pred C---CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCC
Q 016280 195 S---ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 239 (392)
Q Consensus 195 s---~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d 239 (392)
. ++.++-.-.-.+|+.||- +....+.+.+.+.++.+..++.+++
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 3 457888888889999997 4677888999999999999887654
No 173
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.97 E-value=0.86 Score=35.62 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280 116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 116 R~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
.+.|.|++|+++.... -...+.+.+.++.++++..+.+...+|--|.|+|+-+.+..
T Consensus 4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4679999999998544 44545567999999999888778899999999999988753
No 174
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.91 E-value=3.2 Score=35.89 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=60.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCH-HHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDV-TVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~-~vr~kAl~ALS~lvR~~ 173 (392)
+..|.+-|.++++.++.+|..++-.++.|. +.++..|.....+..|+.++....+. .|+.+++..|-+-...+
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 455777888999999999999999999994 67888888888999999988765443 49999998888766544
No 175
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.88 E-value=2.6 Score=37.02 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=78.5
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHHH
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVVD 223 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~~~~l~ 223 (392)
.+|.-..++...+.-....-.|+-+++..+.+. ..++..|.+-|.+.++.++..|+.+|-.++.+.. .....+.
T Consensus 7 ~~I~kATs~~l~~~dw~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva 81 (142)
T cd03569 7 ELIEKATSELLGEPDLASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA 81 (142)
T ss_pred HHHHHHcCcccCccCHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 344443333333334555666777887655432 3477888888999999999999999999997643 3455677
Q ss_pred hcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCC
Q 016280 224 KLGFPRLMLHLAS-SEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 224 ~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.+++..|+.++. ..+..|+++++..+.+-+...
T Consensus 82 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 82 SREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 7899999999987 567889999999998877654
No 176
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=6.2 Score=39.25 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=91.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.-++.+|.+.++.||..|...+-.+..- ..|...- +.-.++.|.+++.. .++ ..-|+.||.++..... -.+..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~-l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEE-LRKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence 4577899999999999999777666654 2333211 12356667777654 333 6788899999886532 33333
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHHHHhhcCC-ChHH-HHHHHHHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLMLHLASSE-DPDV-REAALRGLLE 252 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~------~G~v~~Lv~LL~~~-d~~v-~E~aL~aL~~ 252 (392)
+.. =+..++..+..+...+-.-.|.++++|++........+.. .|+++.......++ +... -++.+..+.+
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 333 5667777777777788888999999999765443332221 34555444444432 2111 2455556666
Q ss_pred HHcCC
Q 016280 253 LAREK 257 (392)
Q Consensus 253 L~~~~ 257 (392)
|++-.
T Consensus 159 ls~~~ 163 (353)
T KOG2973|consen 159 LSQFE 163 (353)
T ss_pred Hhhhh
Confidence 65544
No 177
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.07 E-value=19 Score=39.71 Aligned_cols=88 Identities=22% Similarity=0.111 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHHcCCHHHHHHhhC
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ--NNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq--NNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
.+-+.+..|.-++.++---.+-+--+....+..=|....+.||.+|..+|+.+-. +++++ .+...|+.++.
T Consensus 101 VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~-------~v~n~l~~liq 173 (892)
T KOG2025|consen 101 VRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC-------PVVNLLKDLIQ 173 (892)
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-------cHHHHHHHHHh
Confidence 3445555555555533222222223334555555566788999999999998752 34433 45677888899
Q ss_pred CCCCHHHHHHHHHHHHH
Q 016280 152 SDPDVTVRTKALGAISS 168 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~ 168 (392)
+|++++||+.|+..|+.
T Consensus 174 nDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNISV 190 (892)
T ss_pred cCCcHHHHHHHHHhhcc
Confidence 99999999988776664
No 178
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.60 E-value=13 Score=39.78 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=78.9
Q ss_pred hHHHHHhhcC----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCCHHHHHHhhCC---CCCHHHHHHHHHHHHHh
Q 016280 101 LAPLLGYLKN----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLLSNFAS---DPDVTVRTKALGAISSL 169 (392)
Q Consensus 101 l~~Ll~lL~s----~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~l~~Ll~LL~s---~~~~~vr~kAl~ALS~l 169 (392)
+..+..++++ .++.++..|.-.+|+++. +.+.+...++ ...++.|...|.. ..+...+.-++-||+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4455566654 356788888888887664 3333322222 2356666665542 34555677788888886
Q ss_pred hcCCcccHHHHHHcChHHHHHHhhc---CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHH
Q 016280 170 IRHNKPGIEAFRLANGYAALRDALG---SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVRE 244 (392)
Q Consensus 170 vR~~~~~~~~f~~~gGl~~L~~lL~---s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E 244 (392)
- ++... ..|...+. ..+..+|.-|+++|..++...+.. +-+.++.++. ..+.++|-
T Consensus 474 g--~~~~i---------~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 G--HPSSI---------KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred C--ChhHH---------HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHH
Confidence 3 33332 33344443 235789999999999887544332 2334555555 45778888
Q ss_pred HHHHHHH
Q 016280 245 AALRGLL 251 (392)
Q Consensus 245 ~aL~aL~ 251 (392)
.|..+|.
T Consensus 535 aA~~~lm 541 (574)
T smart00638 535 AAVLVLM 541 (574)
T ss_pred HHHHHHH
Confidence 8876664
No 179
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.48 E-value=1.7 Score=48.35 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhcC--------CCChHHHHHcCChHHHHHhhcCC--------CHHHHHHHHHHHHHHhhCCHHHHHHH
Q 016280 74 DIEDMLDELQEHVES--------IDMANDLHSIGGLAPLLGYLKNS--------HANIRAKAGEVVTTIVQNNPRSQQLV 137 (392)
Q Consensus 74 ~~~~aL~~L~~lve~--------iDnA~d~~~lGgl~~Ll~lL~s~--------~~~IR~~Aa~vLg~iaqNNp~~Q~~v 137 (392)
-.+..+..++.+++- -.-|++|.++||+..++.+..-+ ..++...|..+|.-+ .--|.+|.++
T Consensus 568 ~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~-t~iP~iq~~L 646 (1516)
T KOG1832|consen 568 AVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIV-TSIPDIQKAL 646 (1516)
T ss_pred HHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeee-EecchHHHHH
Confidence 344555555555542 34699999999999999887532 345667777777633 3568888877
Q ss_pred HHc--------CCHHHHHHhhC--C-CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-CCCHHHHH---
Q 016280 138 MEA--------NGLEPLLSNFA--S-DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQR--- 202 (392)
Q Consensus 138 l~~--------g~l~~Ll~LL~--s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-s~d~kl~~--- 202 (392)
... .|+..++..-. . ..|++++..|+..|-+++-.-|...... +..+.. +.+.+...
T Consensus 647 a~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~ 718 (1516)
T KOG1832|consen 647 AHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAG 718 (1516)
T ss_pred HHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCC
Confidence 754 36666655422 1 2478999999999999887655433322 111111 11211111
Q ss_pred -HHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC-----ChHHHHHHHHHHHHHHcCCC
Q 016280 203 -KALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE-----DPDVREAALRGLLELAREKA 258 (392)
Q Consensus 203 -kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~-----d~~v~E~aL~aL~~L~~~~~ 258 (392)
|..-+-..|. .-...+.....|..|+.||+-. -..+|..|.++|.-|+++..
T Consensus 719 ~ks~~le~~l~----~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 719 TKSAKLEQVLR----QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred CchHHHHHHHH----HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 1111111111 1123455667899999999833 24588889999999988875
No 180
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.42 E-value=22 Score=34.52 Aligned_cols=136 Identities=14% Similarity=0.105 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHh
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-----~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~L 149 (392)
-.+|.-|+-...--|....|.+...--.+..+|.. +..-+|-.+..+||.+++|.. ++-..++..+++|..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 46676666667777899999998865556677753 567899999999999999855 666667788999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHH-------HHH-cChHH-HHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEA-------FRL-ANGYA-ALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~-------f~~-~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
+... ++.-+.-|+|-+--++-+. .+... |.. ..-+. .+.++.+.++.++...+......|+.
T Consensus 177 me~G-SelSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 177 MESG-SELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred Hhcc-cHHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 8774 5567777888777766543 23222 211 11122 22233344567777766666666653
No 181
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=89.41 E-value=3.7 Score=36.77 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=86.2
Q ss_pred hHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 101 LAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 101 l~~Ll~lL~s~-~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
++.|+++|+++ +..+|..|..+||.+-.=.|...+.+....- .....+.........+ ...+..+..+.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l-----~~~~~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISL-----PMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHH-----hhccCCCchHH
Confidence 56677888764 6899999999999998877855442222111 0000001111111111 22233346677
Q ss_pred HHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 180 FRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~-G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
|+-.-.+..|++.|+++. ......+..++.++...-...+ +--. -++|.++..+++.+...+|..+.-|..|+
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c--v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC--VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc--hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 778888899999998765 4555577778877774422222 1111 46777888888666688888877776664
No 182
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.17 E-value=1.8 Score=47.30 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=59.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+.||.+++++.++-+|..|+-+++.+-.-++. .+...|.+..|-.++. |.++.|-.+|+.|++.+...++
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence 47888999999999999999999999988773 3667788888888877 5688999999999999987654
No 183
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.03 E-value=4 Score=40.84 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=61.1
Q ss_pred ChHHHHHHhhcCCCHH-HHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 184 NGYAALRDALGSESVK-FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 184 gGl~~L~~lL~s~d~k-l~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
.-+..|.+++++..+. .-.-||.=|.+++...|+....+.+.|+=+.+++|++++|++++-.|+.|+..+.+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3566788888886544 44458888889999999999999999999999999999999999999999987654
No 184
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.00 E-value=6 Score=34.88 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC-
Q 016280 160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS- 237 (392)
Q Consensus 160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~- 237 (392)
....-.|+-+++..+.+. ..++..|.+-|.+.++.++..|+.+|-.++.+... ....+.+..++..|+.++..
T Consensus 18 w~~il~icD~I~~~~~~~-----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~ 92 (144)
T cd03568 18 WGLILDVCDKVKSDENGA-----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR 92 (144)
T ss_pred HHHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc
Confidence 344555666676653332 24677788888899999999999999999976554 34466777899999999987
Q ss_pred CChHHHHHHHHHHHHHHcCCC
Q 016280 238 EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 238 ~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+..|+++++..|...+....
T Consensus 93 ~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 788999999999988776553
No 185
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.95 E-value=2.3 Score=46.42 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=79.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
+..++.+|.+++-.+|..-..+.|+++.+-..--+ .+++ .-+..|+.++. +|..+-+|.||+..+++++.-+..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~q-m~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQ-MVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchh-hHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 46677899999999999999999998864211111 1221 12445555543 457889999999999999853321
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
- .-..+.-+....+.++..+.-||++|..+++.|+..+|-.
T Consensus 380 ~--~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 380 T--VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred c--cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 1 0112334566778899999999999999999999776643
No 186
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=8.9 Score=42.48 Aligned_cols=161 Identities=14% Similarity=0.202 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD 153 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~ 153 (392)
.+.+|+..|.-++-.-+++.++ +|.+++...+.+.+||...---|-.-|.++|.. +++. |..+=+-| .|
T Consensus 51 ~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--ALLS---IntfQk~L-~D 119 (968)
T KOG1060|consen 51 LKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--ALLS---INTFQKAL-KD 119 (968)
T ss_pred HHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--eeee---HHHHHhhh-cC
Confidence 3445555555555555666665 677777777777777776666665566555532 1121 22222222 35
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHH
Q 016280 154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLH 233 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~ 233 (392)
++.-+|.-|+.++|+| |-. ...-+ .+-.+.++.....+.||..|+.+|-.|-+-+++.+..+ ++.+-.
T Consensus 120 pN~LiRasALRvlSsI-Rvp--~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~ 187 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RVP--MIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKK 187 (968)
T ss_pred CcHHHHHHHHHHHHhc-chh--hHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHH
Confidence 7889999999999996 321 11111 23345677778889999999999999988777776644 345556
Q ss_pred hhcCCChHHHHHHHHHHHHHHcCC
Q 016280 234 LASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 234 LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
||.+.++-|.-.|+.|...++-+.
T Consensus 188 LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhH
Confidence 778888888877777765544433
No 187
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.82 E-value=2.8 Score=36.48 Aligned_cols=73 Identities=22% Similarity=0.229 Sum_probs=58.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHH---HHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVT---VRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~---vr~kAl~ALS~lvR~~ 173 (392)
+..|-+-|.+.++.++..|..++-.++.|. +.++..|.....+..|..++.+..... |+.+++-.|..-...+
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 556778889999999999999999999997 688888877778888888877544443 8999987777655433
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.79 E-value=3.3 Score=40.62 Aligned_cols=111 Identities=23% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCHHHHHH-hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-
Q 016280 141 NGLEPLLS-NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD- 218 (392)
Q Consensus 141 g~l~~Ll~-LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~- 218 (392)
+.+..||. -+.+ .+..+|..|+-+++-.+--+.... ..-++.+.+.++.++..++..|+.++.+++..+...
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 34455553 2344 577999999999997665444222 224677888887789999999999999998653322
Q ss_pred hHH-------HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 219 CSV-------VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 219 ~~~-------l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
... .....+++.+...+.+.+++++..|+..++.|.-.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 111 122356778888889999999999999999875544
No 189
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=88.67 E-value=8.6 Score=34.44 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=75.6
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh--HHHHHHhhcCC-CHHHHHHHHHHHHHHhhc---CC
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--YAALRDALGSE-SVKFQRKALNLIQYLLNE---NA 216 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG--l~~L~~lL~s~-d~kl~~kA~~lLs~L~~~---~~ 216 (392)
+..+..+|.+ .+..-|..++.-+..++..++ .+.|...++ +..|..+|+++ ...++.-|+.++..|... .+
T Consensus 27 ~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQS-KSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhCC-CChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456677666 467889999999999998764 355544443 34567777764 478888888888888743 33
Q ss_pred cchHHHHhc---CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 217 SDCSVVDKL---GFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 217 ~~~~~l~~~---G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
+....+..- ++++.++.++.. ..+.+.++.+|..+....+-
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 322222222 455666666655 67889999999999887763
No 190
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=88.65 E-value=9.1 Score=37.16 Aligned_cols=145 Identities=12% Similarity=0.099 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHH
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~-----~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll 147 (392)
..-.+|.-|+-....-|....|.+....-.|..+|+.. ...+|-.+..+||.++.. ++++...+++...+|..+
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 34567777777777888999999999777777888653 356999999999999984 668888888889999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCc-------ccHHHHHHcChHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNK-------PGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDC 219 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~-------~~~~~f~~~gGl~~L~~-lL~s~d~kl~~kA~~lLs~L~~~~~~~~ 219 (392)
+.+... ++--|.-|.|-+--+.-+.. .....+.....+..++. +...++.++.+-.......|+. ++..+
T Consensus 146 r~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar 223 (262)
T PF04078_consen 146 RIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAR 223 (262)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHH
Confidence 998774 66778889888887765421 11222223334443333 3334566666666666666653 34433
Q ss_pred H
Q 016280 220 S 220 (392)
Q Consensus 220 ~ 220 (392)
+
T Consensus 224 ~ 224 (262)
T PF04078_consen 224 E 224 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=88.62 E-value=1.6 Score=34.17 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGF 227 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~ 227 (392)
.+.|+||++++.. .+.+...+...+-++.++++... +...+|--|.+.|.-+ ....+..+.+.+.|+
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lgli-s~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLI-SSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHH-hCCHHHHHHHHHcCC
Confidence 5789999999976 45666666667999999999875 5567777666666544 456777888888876
No 192
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.61 E-value=5.3 Score=42.96 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhC-CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC
Q 016280 32 DRRWFMEAMQSQ-TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN 110 (392)
Q Consensus 32 ~~~~L~~Al~~~-~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s 110 (392)
-|+||.+|+... +.+-++.|++.+ .++.++..+...+|-.|...+. .....+ +..+..++++
T Consensus 380 ~r~~~lDal~~aGT~~av~~i~~~I----------~~~~~~~~ea~~~l~~l~~~~~--~Pt~e~-----l~~l~~L~~~ 442 (618)
T PF01347_consen 380 ARKIFLDALPQAGTNPAVKFIKDLI----------KSKKLTDDEAAQLLASLPFHVR--RPTEEL-----LKELFELAKS 442 (618)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHH----------HTT-S-HHHHHHHHHHHHHT-------HHH-----HHHHHHHHT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHhhcC--CCCHHH-----HHHHHHHHhC
Confidence 345555554442 333344444422 2233444444455544444442 122222 3344445544
Q ss_pred ----CCHHHHHHHHHHHHHHhhCCHHHHH-----------HHHHcCCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcC
Q 016280 111 ----SHANIRAKAGEVVTTIVQNNPRSQQ-----------LVMEANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 111 ----~~~~IR~~Aa~vLg~iaqNNp~~Q~-----------~vl~~g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~ 172 (392)
.++.++..|.-.+|+++.. .|.. ..+....++.|...|. +..+...+..++-||+|+-
T Consensus 443 ~~~~~~~~l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-- 518 (618)
T PF01347_consen 443 PKVKNSPYLRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-- 518 (618)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--
T ss_pred ccccCChhHHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--
Confidence 4567888888888877642 1111 1122235566666655 3456788899999999983
Q ss_pred CcccHHHHHHcChHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHHHHH
Q 016280 173 NKPGIEAFRLANGYAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVREAAL 247 (392)
Q Consensus 173 ~~~~~~~f~~~gGl~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E~aL 247 (392)
++ ..++.|..++... +..+|..|+++|..+....+. .+.+.+..++. ..+.++|-.|.
T Consensus 519 ~~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 519 HP---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp -G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred Cc---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHH
Confidence 33 2455667777665 689999999999988654332 12345666665 45678898888
Q ss_pred HHHH
Q 016280 248 RGLL 251 (392)
Q Consensus 248 ~aL~ 251 (392)
.+|.
T Consensus 582 ~~lm 585 (618)
T PF01347_consen 582 LILM 585 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 193
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=8.7 Score=42.11 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=101.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
..--+.||.++.-.=+.-....++-+..-|.+.-..++ ..+-.=|.+ .++....-|+.+|+++- .......|
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvi-----n~iknDL~s-rn~~fv~LAL~~I~niG--~re~~ea~ 147 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVI-----NSIKNDLSS-RNPTFVCLALHCIANIG--SREMAEAF 147 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHH-----HHHHhhhhc-CCcHHHHHHHHHHHhhc--cHhHHHHh
Confidence 33445788776444444445555555544443323222 222222233 35677788999999873 23334444
Q ss_pred HHcChHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 181 RLANGYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d--~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.-++ ++|-|.+ .-+|.||+-.|..|....|+ .+---++..++++||.+.|..+...+...+..|+...+
T Consensus 148 --~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 148 --ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred --hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 22233 5555543 78999999999999887554 33344789999999999999999999999999999998
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 016280 259 DGSAIKLAEDNEKLKQLL 276 (392)
Q Consensus 259 ~~~~~~~~~~~~~L~~~L 276 (392)
+....|+.-...+|....
T Consensus 220 ~~yk~~~~~avs~L~riv 237 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIV 237 (938)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 766655344444444433
No 194
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.30 E-value=9.4 Score=37.09 Aligned_cols=166 Identities=17% Similarity=0.104 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhcCCC--------ChHHHHHcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Q 016280 75 IEDMLDELQEHVESID--------MANDLHSIGGLAPLLGYLKNSH----ANIRAKAGEVVTTIVQNNPRSQQLVMEANG 142 (392)
Q Consensus 75 ~~~aL~~L~~lve~iD--------nA~d~~~lGgl~~Ll~lL~s~~----~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~ 142 (392)
.+..++.|..|+.-.| +.--+.=++.+|.++.-+.++. ...-..+|..|+.+|.++ +...
T Consensus 79 ~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~ 150 (262)
T PF14225_consen 79 YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPN 150 (262)
T ss_pred HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCcc
Confidence 3455555555554322 3333334456666666666655 234446667888887432 2345
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
+..++..+.+..-.+...-.--+++++..++-+.. ....+..|..+|.....-+|.+++..|..|...-+..+.
T Consensus 151 La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 151 LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence 66666665543221122222233344444432211 334667789999999999999999999999976544433
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
....++..+..+|++ +....|+.+|-.+++-+
T Consensus 225 ~~~dlispllrlL~t---~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 225 HGADLISPLLRLLQT---DLWMEALEVLDEIVTRS 256 (262)
T ss_pred cchHHHHHHHHHhCC---ccHHHHHHHHHHHHhhc
Confidence 444578888888876 44566677666655433
No 195
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=87.99 E-value=30 Score=34.34 Aligned_cols=138 Identities=20% Similarity=0.183 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhcCC---CChHHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHh---hCCHHHHHHHHHcCCHH
Q 016280 73 QDIEDMLDELQEHVESI---DMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIV---QNNPRSQQLVMEANGLE 144 (392)
Q Consensus 73 e~~~~aL~~L~~lve~i---DnA~d~~~lGgl~~Ll~lL~s--~~~~IR~~Aa~vLg~ia---qNNp~~Q~~vl~~g~l~ 144 (392)
++..-|+..+.-++=++ +.+..+++. ..++|.+.+.. ....+|..++.+||-++ .+.+..-...++. +.
T Consensus 101 ~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~--le 177 (309)
T PF05004_consen 101 EEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES--LE 177 (309)
T ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH--HH
Confidence 55556666666665553 567777663 35666677764 35667888887777654 3444333322221 22
Q ss_pred HHH--HhhCCC---------CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 145 PLL--SNFASD---------PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 145 ~Ll--~LL~s~---------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
.+. .....+ ++..+...|+.+-+-|+..-+...-.-.....++.|..+|.+++..||.-|.-+|.-|..
T Consensus 178 ~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 178 SIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 111 112221 235789999999998887766532222235579999999999999999999998887754
No 196
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.99 E-value=1.2 Score=39.66 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=74.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHH-cCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280 107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN 184 (392)
Q Consensus 107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~-~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g 184 (392)
++...+.+-...+..+++.+-+--|.+-..++. .|.++.++.+.. ...+..++..++-+|+.-|-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 333333335667899999999998977776664 466677777776 235789999999999998854 4567778899
Q ss_pred hHHHHHHhhc-CCCHH-HHHHHHHHHH
Q 016280 185 GYAALRDALG-SESVK-FQRKALNLIQ 209 (392)
Q Consensus 185 Gl~~L~~lL~-s~d~k-l~~kA~~lLs 209 (392)
|++.|...++ +++.. +|..|+-.|.
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 9999999995 66676 8888876654
No 197
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=15 Score=43.39 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=99.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
+|.|.++=-.|+..||..-..+.++++++...+-+..++. .+.-|+.-+.+ ..=-||..+..||+-++|+.+..+..-
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e 1077 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNE-ILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKE 1077 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 5666676667999999999999999999866665555443 56666665554 234689999999999999976433221
Q ss_pred HHcChHHHHHHhhcCCCHHHH---HHHHHHHHHHhhc--CCc---chHHHHhcCchHHHHH-hhcCCChHHHHHHHHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQ---RKALNLIQYLLNE--NAS---DCSVVDKLGFPRLMLH-LASSEDPDVREAALRGLL 251 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~---~kA~~lLs~L~~~--~~~---~~~~l~~~G~v~~Lv~-LL~~~d~~v~E~aL~aL~ 251 (392)
-...-+..+.+.+.+-.+.+| .+++.+|+.||-. ++. .-..+.+ -++|.|.. -+-+.-..+|..++.+|.
T Consensus 1078 ~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~ 1156 (1702)
T KOG0915|consen 1078 KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLM 1156 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHH
Confidence 123456666677665444444 4566667777621 111 1111111 22333322 112556789999999999
Q ss_pred HHHcCCCh
Q 016280 252 ELAREKAD 259 (392)
Q Consensus 252 ~L~~~~~~ 259 (392)
.|+.+...
T Consensus 1157 dl~Kssg~ 1164 (1702)
T KOG0915|consen 1157 DLAKSSGK 1164 (1702)
T ss_pred HHHHhchh
Confidence 99988763
No 198
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.84 E-value=4.5 Score=35.01 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcCC
Q 016280 160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASSE 238 (392)
Q Consensus 160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~~ 238 (392)
....-.|+-+++..+.+.. .++..|.+-|.++++.++..|+.+|-.++.+... ....+.+.+++..|+.++...
T Consensus 18 w~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~ 92 (133)
T smart00288 18 WELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK 92 (133)
T ss_pred HHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence 4556667778877654333 2567788889999999999999999999976433 345666778999999988854
Q ss_pred C-hH-HHHHHHHHHHHHHcCC
Q 016280 239 D-PD-VREAALRGLLELAREK 257 (392)
Q Consensus 239 d-~~-v~E~aL~aL~~L~~~~ 257 (392)
. .. |+++++..+.+-+...
T Consensus 93 ~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 93 YPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 3 33 9999999998876654
No 199
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.52 E-value=29 Score=39.10 Aligned_cols=139 Identities=12% Similarity=0.200 Sum_probs=95.1
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHH-HHHh-h-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAP-LLGY-L-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD 153 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~-Ll~l-L-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~ 153 (392)
-..+.|.. +...|.+-....-.-+-| ++.+ + .++++.|-..+-.++-.+.|+ ..++.-.. .-.||.|++.+...
T Consensus 549 llmE~Ls~-vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~-e~~iPslisil~~~ 625 (1005)
T KOG2274|consen 549 LLMEALSS-VVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQ-ERLIPSLISVLQLN 625 (1005)
T ss_pred HHHHHHHH-HhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchH-HHHHHHHHHHHcCc
Confidence 33444443 445666655544444444 4443 3 357888888888888888883 44544322 24689999998754
Q ss_pred C---CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 154 P---DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA-LGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 154 ~---~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l-L~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
. ......-|+.-|.+++|+.++-...-+..-.++.+.++ |+++|..+-..+--+|++++....+.
T Consensus 626 ~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 626 ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 2 24677788999999999988766555566688888887 57888888889999999998754443
No 200
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.50 E-value=5.3 Score=34.75 Aligned_cols=109 Identities=23% Similarity=0.196 Sum_probs=75.7
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-cchHHH
Q 016280 144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-SDCSVV 222 (392)
Q Consensus 144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~~~~l 222 (392)
..+|.-..++...+.-..+..-|+-+++..+.+.. .++..|.+-|.+.+++++..|+.+|-.++.+.. .....+
T Consensus 7 ~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 7 TELIEKATSESLPSPDWSLILEICDLINSSPDGAK-----EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34454444332222234566678888887644332 367778888999999999999999999997653 334556
Q ss_pred HhcCchHHHHHhhcC-CChH---HHHHHHHHHHHHHcCC
Q 016280 223 DKLGFPRLMLHLASS-EDPD---VREAALRGLLELAREK 257 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~-~d~~---v~E~aL~aL~~L~~~~ 257 (392)
....++..|..++.. .... |+++++..|...+...
T Consensus 82 ~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 82 ASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp TSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 667889999998874 3333 8999999998877766
No 201
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.33 E-value=8.2 Score=43.98 Aligned_cols=147 Identities=13% Similarity=0.061 Sum_probs=99.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
+.++.|+.-|++.+..|||.||.-+|.+++.-|.. +...++...+.++.--.+...=--|.-||+-+.+-.---..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 34666777788899999999999999999988832 22345666777655333344445888888888765432222
Q ss_pred HHHHcChHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHH-----hhcCCChHHHH
Q 016280 179 AFRLANGYAALRDALGS--------ESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLH-----LASSEDPDVRE 244 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s--------~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~-----LL~~~d~~v~E 244 (392)
.+ ...++++...|.- ....+|-.||+++-.+.+..... .+ +++..|.. -+-+.+.++|.
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~-----p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLK-----PVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhh-----HHHHHHHHHHHHHHhcCchhhHhH
Confidence 22 3467777776653 34679999999999999764433 22 23333333 33477889999
Q ss_pred HHHHHHHHHHcC
Q 016280 245 AALRGLLELARE 256 (392)
Q Consensus 245 ~aL~aL~~L~~~ 256 (392)
.|..|+...+.-
T Consensus 490 AAsAAlqE~VGR 501 (1133)
T KOG1943|consen 490 AASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHHhcc
Confidence 999999887654
No 202
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.18 E-value=13 Score=40.31 Aligned_cols=177 Identities=13% Similarity=0.092 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcC----C------CHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKN----S------HANIRAKAGEVVTTIVQNNPRSQQLVME 139 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s----~------~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~ 139 (392)
.|++....|.++.+.++..+- +..+.-+..++.+..++-. + .+.++......- ..-+.+++
T Consensus 204 nPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr--------~yE~~Ll~ 275 (704)
T KOG2153|consen 204 NPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLR--------EYEQALLK 275 (704)
T ss_pred CHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHH--------HHHHHHHH
Confidence 456677788888888887765 6777666666655444321 1 111111111110 01111111
Q ss_pred c--CCHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280 140 A--NGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 215 (392)
Q Consensus 140 ~--g~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~ 215 (392)
. ..+..|..+.... ..+....-+.-|++|+|.=-......-+..+-+..+++.+.++...+..-++..+.++..++
T Consensus 276 ~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 276 QYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 1 2345555544322 11222223334444544211111111134567778888888888888899999999999765
Q ss_pred CcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 216 ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 216 ~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
. ..-...++|..+..+++.-+.+++..++.++.+|-.+..
T Consensus 356 ~---~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed 395 (704)
T KOG2153|consen 356 N---GGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDED 395 (704)
T ss_pred C---ccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhh
Confidence 4 233345677888888888888999999999988855444
No 203
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=87.18 E-value=42 Score=35.58 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhcCCCC--hHH--HHHcCChHHHHHhhcCC-------CHHHHHHHHHHHHHHhhCCH-HHHHHHHHc
Q 016280 73 QDIEDMLDELQEHVESIDM--AND--LHSIGGLAPLLGYLKNS-------HANIRAKAGEVVTTIVQNNP-RSQQLVMEA 140 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDn--A~d--~~~lGgl~~Ll~lL~s~-------~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~ 140 (392)
+++-.+|--...+|.+-|. ++. +.+.=|++.+=++|.+. +.-.|.-+..+++..|+.-+ ..-+.++
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v-- 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV-- 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--
Confidence 4444455555555654442 333 66666788888888642 44578889999998888633 1112333
Q ss_pred CCHHHHHHhhCCCCCHH------HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC----CCHHHHHHHHHHHHH
Q 016280 141 NGLEPLLSNFASDPDVT------VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS----ESVKFQRKALNLIQY 210 (392)
Q Consensus 141 g~l~~Ll~LL~s~~~~~------vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s----~d~kl~~kA~~lLs~ 210 (392)
+.||.|+..+....++. +...+-.+|-.+. +.+++....+..||++.+.++-.- .+..+..+...++..
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~ 182 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVS 182 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHH
Confidence 45888888876432222 4444444444444 448899999999999999987543 346666666555554
Q ss_pred HhhcCCcchHH
Q 016280 211 LLNENASDCSV 221 (392)
Q Consensus 211 L~~~~~~~~~~ 221 (392)
=+..-++....
T Consensus 183 ~~~cw~e~~~~ 193 (698)
T KOG2611|consen 183 KLDCWSETIER 193 (698)
T ss_pred hcccCcCCHHH
Confidence 44444444433
No 204
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.13 E-value=6.2 Score=34.63 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS 237 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~ 237 (392)
-....-.|+=+++..+.+. ..++..|.+-|++.++.++..|+.+|-.++.+... ....+.+.+++..|+.++..
T Consensus 18 dw~~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 18 DWEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred CHHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence 3455666666776554332 34777888889999999999999999999975443 34567778899899999863
Q ss_pred ------CChHHHHHHHHHHHHHHcCCC
Q 016280 238 ------EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 238 ------~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+..|+++++..|..-+...+
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 93 KYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 578999999999988776553
No 205
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=86.83 E-value=7.3 Score=43.65 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=89.4
Q ss_pred ChHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---CCCC----HHH
Q 016280 91 MANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SDPD----VTV 158 (392)
Q Consensus 91 nA~d~~~lGgl~~Ll~lL~s~-----~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s~~~----~~v 158 (392)
.++.|.+.||+..++.+|.+- ...+-.....++..|+.- +.+++++++.|+++.|+..|. .... ..+
T Consensus 109 ~~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i 187 (802)
T PF13764_consen 109 IASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEI 187 (802)
T ss_pred HHHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchH
Confidence 467788899999999998762 345667788888988865 889999999999999998764 2222 455
Q ss_pred HHHHHHHHHHhhcCCc----ccHHHHHHcCh--------HHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 159 RTKALGAISSLIRHNK----PGIEAFRLANG--------YAALRDALGSE----SVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~----~~~~~f~~~gG--------l~~L~~lL~s~----d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
-.+.+--|-.++..-. .....+....| +..|...+.++ +.++..-.+.+|-+|+-++++..+.+
T Consensus 188 ~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 188 AEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 5666655555543211 11112222333 67777777764 58888888889999987766654433
No 206
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.55 E-value=17 Score=39.11 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 016280 144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 223 (392)
Q Consensus 144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~ 223 (392)
..+|..... +..+++-|..-|.-..+++|..... ++..+..+....+..+|..|..-|-.+|.++++....
T Consensus 26 ~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 345555443 5789999999999999999876654 6788999999999999999999999999887776654
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
++..|++||.+++..-...+=.+|.+|...++.
T Consensus 97 ---vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k 129 (556)
T PF05918_consen 97 ---VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK 129 (556)
T ss_dssp ---HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH
T ss_pred ---HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH
Confidence 456899999999988777777777777776664
No 207
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.37 E-value=8.5 Score=42.63 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=39.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280 107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
||.|.++.+-..+|.+.=.+| |+.|.. ..+.+|+++|.+ +..+|.-.+.+|+.++.-.
T Consensus 295 Ll~S~n~sVVmA~aql~y~lA---P~~~~~----~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLA---PKNQVT----KIAKALVRLLRS--NREVQYVVLQNIATISIKR 352 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhC---CHHHHH----HHHHHHHHHHhc--CCcchhhhHHHHHHHHhcc
Confidence 445666677666776666666 333332 237789999887 3568888888888887543
No 208
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.07 E-value=4.6 Score=45.26 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=103.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHH-c-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-A-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~-~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
.+|.|++........+|..-..+|+++..|-|. |. ++. . ..+|.|++.|.- +|..+|..++..|.-++..++.-+
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~v-llp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QV-LLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-Hh-hccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccc
Confidence 456677777777778999999999999998886 33 333 2 355667777665 688999999999999888776655
Q ss_pred HHHHHcChHHHHHHhhcCCC---HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 016280 178 EAFRLANGYAALRDALGSES---VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRG 249 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~d---~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~a 249 (392)
..-+ .--++.+..+=.+.+ ..+|..|...+..|.+--|...-.-..-.+++.|...|.++.--+|+.|.++
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 5432 224555555545544 7899999999999987555543333344567777777777777788877754
No 209
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.56 E-value=0.28 Score=51.13 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280 111 SHANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
....|||.||.++||+..|-.. .|..=...-+++.|..++.+..+-.||..|..||+--.
T Consensus 542 ~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 542 AAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred cccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 3567999999999999987553 55544455678899999888788899999999998643
No 210
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=85.51 E-value=23 Score=33.80 Aligned_cols=194 Identities=15% Similarity=0.134 Sum_probs=109.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCcc------HHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHH
Q 016280 23 RSTRNLSEEDRRWFMEAMQSQTVD------VIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLH 96 (392)
Q Consensus 23 ~~~~~~s~E~~~~L~~Al~~~~~D------~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~ 96 (392)
.+..+|++++.+.|.+.+...... ......-+..++.. -..+.+-=+||-++-++-....+..+.
T Consensus 31 ~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------Wp~~~~fP~lDLlRl~~l~~~~~~~~~ 101 (268)
T PF08324_consen 31 QKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLS---------WPPESRFPALDLLRLAALHPPASDLLA 101 (268)
T ss_dssp HCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC---------S-CCC-HHHHHHHHHHCCCHCHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHh---------CCCccchhHHhHHHHHHhCccHHHHHh
Confidence 345688999999999888875332 21222222333322 233556678888888887777666666
Q ss_pred HcCC--hHHHHHhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-C-CHHHHHHhhCCCC---CHHHHHHHHHH
Q 016280 97 SIGG--LAPLLGYLK----NSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-N-GLEPLLSNFASDP---DVTVRTKALGA 165 (392)
Q Consensus 97 ~lGg--l~~Ll~lL~----s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g-~l~~Ll~LL~s~~---~~~vr~kAl~A 165 (392)
..++ ...+..++. +..+..+..++.+++|+..+.+ .+..++.. + .+...+..+.... +..+|..+...
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl 180 (268)
T PF08324_consen 102 SEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATL 180 (268)
T ss_dssp STTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHH
Confidence 5542 344444443 2578899999999999998765 44445544 3 3444444434332 56677766665
Q ss_pred HHHhhc---CCcc-cHHHHHHcChHHHHHHhhc-C-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 166 ISSLIR---HNKP-GIEAFRLANGYAALRDALG-S-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 166 LS~lvR---~~~~-~~~~f~~~gGl~~L~~lL~-s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+-|++. .... ... ...-+..+...+. . .+....-+++-++..|+..++...+.....|+-.
T Consensus 181 ~~Nlsv~~~~~~~~~~~---~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~ 247 (268)
T PF08324_consen 181 LLNLSVLLHKNRSDEEW---QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKS 247 (268)
T ss_dssp HHHHHHHHHHCTS-CCH---HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHH
T ss_pred HHHHHHHHHhcCCChHH---HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHH
Confidence 555432 2221 000 1112344445332 2 5788999999999999965444343333344443
No 211
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.37 E-value=11 Score=36.52 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=84.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAFRL 182 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f~~ 182 (392)
|=.+|.+++..+|.+|..+|+.+...-|.- .+...-+..|+..+.+- .|...-.-++.++..+++........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence 446899999999999999999999876632 23333355555554321 24444455577888887554322222
Q ss_pred cChHHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcC-CChHHHHHHHHHHHHHH
Q 016280 183 ANGYAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASS-EDPDVREAALRGLLELA 254 (392)
Q Consensus 183 ~gGl~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~ 254 (392)
+..++..+.+. -....|..+-.++..|+.... ..+..+ +++..+++++.. .|+.-.-.+-+.+..+.
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 33444444432 236777888888888886533 233333 466777777663 45655555554444443
Q ss_pred c
Q 016280 255 R 255 (392)
Q Consensus 255 ~ 255 (392)
+
T Consensus 153 ~ 153 (262)
T PF14500_consen 153 Q 153 (262)
T ss_pred H
Confidence 3
No 212
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=10 Score=40.69 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=84.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280 106 GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 185 (392)
Q Consensus 106 ~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG 185 (392)
.+|.+.++-+|...+..++.+--.. -..|++..|+..--+|.+..||+.|+-||+-+|-..+ +.
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DL 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------ch
Confidence 5667778888888777776542110 1235677788876677888999999999998765433 23
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 186 YAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 186 l~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.-.+++|. |-+.-+|--.+++|.-.|.+.... . .+..|-.|..+...=||..|.-+++-|...+.
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-V------ATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-H------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 344455554 456888888888888777653222 1 13344455566666677777777776655443
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.25 E-value=3.7 Score=33.41 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 187 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 187 ~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.....-+.++..-+|..++..|+.|+.... .....-.+++..+...|+++|.-+.-.|.++|..|+.-.+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 344566778888899999999999997655 22333346777788889999999999999999999887764
No 214
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.03 E-value=4.8 Score=40.03 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH--HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR--LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~--~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
.|+.++.+ .++.||..|+.-+.++... + .+.|. ..--++.|.+++...++ -+.|++++.++... ..-+..+
T Consensus 7 elv~ll~~-~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~l 79 (353)
T KOG2973|consen 7 ELVELLHS-LSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKL 79 (353)
T ss_pred HHHHHhcc-CChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence 46666554 6789999999888888754 2 22222 23456667788776655 67889999999864 5556666
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+. +++.++..+..+...+-+....+|+|++++..
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence 666 88888888888877788888888888888775
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=3.9 Score=44.86 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=32.6
Q ss_pred cCChHHHHH-hhcCCCHHHHHHHHHHHHHH--hh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280 98 IGGLAPLLG-YLKNSHANIRAKAGEVVTTI--VQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 171 (392)
Q Consensus 98 lGgl~~Ll~-lL~s~~~~IR~~Aa~vLg~i--aq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR 171 (392)
.+...+++. ++...++-+|......++-+ .. || +++..|+..--+|.+..||+.|+-||+=++-
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----------kair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----------hhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 344555553 44555666666555444432 11 22 2344555554455555666666666665443
No 216
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.99 E-value=7.1 Score=38.79 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=70.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhh-C--CCCCHHHHHHHHHHHHHhhcCCccc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNF-A--SDPDVTVRTKALGAISSLIRHNKPG 176 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL-~--s~~~~~vr~kAl~ALS~lvR~~~~~ 176 (392)
+-.+++-+++....|-..||.+++.+.++ |..+++ .+..++..| . ...+..|+..|.-||-.++.+-.++
T Consensus 131 ii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~ 204 (334)
T KOG2933|consen 131 IIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ 204 (334)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence 45566778889999999999999999996 444544 233333322 2 2345689999999999999775543
Q ss_pred HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 177 IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 177 ~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
. .++.|..+++..+.+++.+++....+..
T Consensus 205 ~-------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 205 K-------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 3556677788888999999987666554
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.93 E-value=4 Score=43.70 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=76.7
Q ss_pred CChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 99 GGLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 99 Ggl~~Ll~l-L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
|.+..++.+ .+..+.+||..|..+||-++-..+ +.++..+++|....+..||.-...||+-.|.+.-.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-- 619 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-- 619 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--
Confidence 344445554 455789999999999998875443 56777888887767889999999999988876431
Q ss_pred HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280 178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 215 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~ 215 (392)
.-.+.+|-.++...+.-+|.-|+-+++.++.+.
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 125667888888888999999999999887553
No 218
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.77 E-value=17 Score=39.68 Aligned_cols=183 Identities=17% Similarity=0.162 Sum_probs=97.8
Q ss_pred ccHHHHHHHHHHHhcCcHH----hhhh-------CCCCHHHHHHHHHHHHHhhcCCCChHHHHHcC----ChHHHHHhhc
Q 016280 45 VDVIKRMKEITLVMQTPEQ----VLES-------QGVTPQDIEDMLDELQEHVESIDMANDLHSIG----GLAPLLGYLK 109 (392)
Q Consensus 45 ~D~~~~mk~~~~~l~~~~~----~l~~-------~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lG----gl~~Ll~lL~ 109 (392)
+|++...++++.++++... .++. ..-.++.+--|||.|+.++-..-....|++.- -+..++..++
T Consensus 520 ~d~~~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~ 599 (745)
T KOG0301|consen 520 PDEINGLEEILSLIKNSSHYSSEVLQSLLALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN 599 (745)
T ss_pred cchhhhHHHHHHhhcCCCCccchhHHHHHHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc
Confidence 5666666666666654320 0000 00123445678999999998887777777632 2333444444
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh---CCCCCHHHHHHHHHHHHHhhcCCcccHHH-HHHcCh
Q 016280 110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF---ASDPDVTVRTKALGAISSLIRHNKPGIEA-FRLANG 185 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL---~s~~~~~vr~kAl~ALS~lvR~~~~~~~~-f~~~gG 185 (392)
.++..+..++.+|.|+..| |.-++.+... +..++..+ .+.++..++. |++.++-+......+ -.+.+|
T Consensus 600 -~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~i----a~atlaln~sv~l~~~~~~~~~ 671 (745)
T KOG0301|consen 600 -ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQI----ALATLALNYSVLLIQDNEQLEG 671 (745)
T ss_pred -cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHH----HHHHHHHHHHHHHHhcccccch
Confidence 5577888999999999987 7777766654 33333322 2222223322 222222221111100 112677
Q ss_pred HHHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc
Q 016280 186 YAALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 236 (392)
Q Consensus 186 l~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~ 236 (392)
.+.|..++.. ++..-.-+.+.+|..|+..+...++ +.+.--+..++.-++
T Consensus 672 ~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 672 KEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-LAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-HHHhcCHHHHHHHHH
Confidence 7777766653 2344556677788888875433333 333333455554444
No 219
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.77 E-value=27 Score=36.86 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=78.3
Q ss_pred hHHHHHcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHH
Q 016280 92 ANDLHSIGGLAPLLGYL----KNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAI 166 (392)
Q Consensus 92 A~d~~~lGgl~~Ll~lL----~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~AL 166 (392)
-+.+-+.|.+..++..| .++++.+|..|+.+||+.+.-.| +++.. ..-.+..++.-|..+.+.+|.-.|+.+|
T Consensus 247 ~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~L 324 (533)
T KOG2032|consen 247 PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCL 324 (533)
T ss_pred cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 33344677777666544 35788999999999999999855 33332 1223445555555555678888887777
Q ss_pred HHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 167 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 167 S~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
-+++---..-.-.++-.+..--+..++.+.++++|..|-.++..|..
T Consensus 325 t~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 325 TMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 77653211111122233444457788889999999999999998874
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=84.73 E-value=9.1 Score=44.23 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhcCCCChHHHH-----------------HcCChHHHH----HhhcC-CCHHHHHHHHHHHHHHhhCCHHH
Q 016280 76 EDMLDELQEHVESIDMANDLH-----------------SIGGLAPLL----GYLKN-SHANIRAKAGEVVTTIVQNNPRS 133 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~-----------------~lGgl~~Ll----~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~ 133 (392)
-.+++--..++++.+.+.+|. +..|.-.++ .++++ .....|..|..+|..++++-.
T Consensus 378 ~~al~~~r~~~~~l~~~~dl~~~~q~~~~~~~~~~~~~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~-- 455 (1431)
T KOG1240|consen 378 SKALEFSRHLIENLDVIQDLKPEKQLWTARSSPNIKDPKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYID-- 455 (1431)
T ss_pred HHHHhhhhhhcccchhhhccchHHhcccccCCcccCCccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc--
Confidence 345554446777777666662 222333333 44444 355678889999999998632
Q ss_pred HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH---hhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHH
Q 016280 134 QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS---LIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQ 209 (392)
Q Consensus 134 Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~---lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs 209 (392)
-+..++ -++|.++.++.. +...||..|+-+|.- ++|..++.-..+...=-+|-|.+++.+ ....+|..-+.-|.
T Consensus 456 de~~LD-RVlPY~v~l~~D-s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla 533 (1431)
T KOG1240|consen 456 DEVKLD-RVLPYFVHLLMD-SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLA 533 (1431)
T ss_pred hHHHHh-hhHHHHHHHhcC-chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHH
Confidence 122223 478888888664 678999999998886 466666554444445578888888887 55666665555565
Q ss_pred HHh
Q 016280 210 YLL 212 (392)
Q Consensus 210 ~L~ 212 (392)
.|+
T Consensus 534 ~LA 536 (1431)
T KOG1240|consen 534 QLA 536 (1431)
T ss_pred HHH
Confidence 554
No 221
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=84.56 E-value=4.7 Score=35.33 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=56.6
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH-HHHhhCCC--CCHHHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFASD--PDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~-Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~ 173 (392)
+..|-+=|. +.++.+...|..+|-+|++|. +.++..|.....+.. |+.++... .+..|+.+.+..|-+-...+
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 445555455 468999999999999999997 578888888888987 89988632 35689999988887766544
No 222
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=83.98 E-value=7.7 Score=35.91 Aligned_cols=127 Identities=12% Similarity=0.113 Sum_probs=80.9
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc----------------CCHHHHHHhhCCCCC-----HHHHHHHHHHH
Q 016280 108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA----------------NGLEPLLSNFASDPD-----VTVRTKALGAI 166 (392)
Q Consensus 108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~----------------g~l~~Ll~LL~s~~~-----~~vr~kAl~AL 166 (392)
+..+....--.+|.+|+|++....-+.. +++. ..+..|+.++..+.+ ..---...+.+
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 3344455666788888888886655542 3322 357788888766211 22334667888
Q ss_pred HHhhcCCcccHHHHHHcC--h--HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhc
Q 016280 167 SSLIRHNKPGIEAFRLAN--G--YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLAS 236 (392)
Q Consensus 167 S~lvR~~~~~~~~f~~~g--G--l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G~v~~Lv~LL~ 236 (392)
+|+.+. +.+.+.|+... . +..|..++.+.+.--|.-++.+|.++|-+.......+-+ .++++.|+--|.
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 998864 67788887542 3 556777777776666777888999999775555443332 356666655444
No 223
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=83.61 E-value=19 Score=29.87 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=52.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHh-----hCCCCCHHHHHHHHHHHHHh
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSN-----FASDPDVTVRTKALGAISSL 169 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~L-----L~s~~~~~vr~kAl~ALS~l 169 (392)
+..|..-|.+.++.+.-.|..+|=.+++|. +.++..+.....+..++.. ...+.+..||.++++.+...
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 555666778889999999999999999995 5788878777666666553 22345789999999877653
No 224
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=16 Score=40.33 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHH
Q 016280 110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 189 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L 189 (392)
..+.+||+.|..+||-++-..|. .++..+++|...-++.||.-|..||+=.|-+.- ... ++.+|
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e------Ai~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE------AINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH------HHHHH
Confidence 35667777777777766655552 356667776666667777777777776665532 111 34455
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHh
Q 016280 190 RDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 190 ~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
-.+...+..-||.-|+-+++-+.
T Consensus 630 epl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 630 EPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred hhhhcChHHHHHHHHHHHHHHHH
Confidence 55555555566666666655554
No 225
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.48 E-value=7.7 Score=42.51 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=106.3
Q ss_pred cCChHHHHH-hhcC----CCHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280 98 IGGLAPLLG-YLKN----SHANIRAKAGEVVTTIV-QNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 171 (392)
Q Consensus 98 lGgl~~Ll~-lL~s----~~~~IR~~Aa~vLg~ia-qNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR 171 (392)
+|-+.|++. ...+ +++.++..|.-++..+. -.+..|-+ -+|.|+..+...+++.+|.+|+-+++-+.-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e------hlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE------HLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhhCCCcceeccceeeccccce
Confidence 456777775 4433 68899999888887643 34444433 388899998877899999999999887654
Q ss_pred CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 016280 172 HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLL 251 (392)
Q Consensus 172 ~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~ 251 (392)
-+.. |++. --..|.+-|...+..||+.+...+.+|+-.+ .+.--|-.+.++.+|.++|..+.+.|=..+.
T Consensus 964 cfN~----~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft 1033 (1128)
T COG5098 964 CFNT----TADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFT 1033 (1128)
T ss_pred ehhh----hhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHH
Confidence 3322 2222 2345677788889999999999999988643 2333478888999999999999999988888
Q ss_pred HHHcCCC
Q 016280 252 ELAREKA 258 (392)
Q Consensus 252 ~L~~~~~ 258 (392)
.++....
T Consensus 1034 ~~a~KdN 1040 (1128)
T COG5098 1034 QIAKKDN 1040 (1128)
T ss_pred HHHhccc
Confidence 8877655
No 226
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.34 E-value=8.1 Score=42.60 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=101.3
Q ss_pred HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHH---HHH
Q 016280 93 NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGA---ISS 168 (392)
Q Consensus 93 ~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~A---LS~ 168 (392)
..+++.-+++-+-.++...++-+|..|+.++.++.-..-..-..+.++ ..++....++.. .+......+..+ |.+
T Consensus 578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~s 656 (748)
T KOG4151|consen 578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITS 656 (748)
T ss_pred HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhh
Confidence 336766666666667788999999999999999998766555566664 455444444333 344455554444 445
Q ss_pred hhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280 169 LIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 248 (392)
Q Consensus 169 lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~ 248 (392)
++.++... ......+...++.++.+.+..+|-+.+.-+.++..........+.+....+.+..+-.......++.+..
T Consensus 657 v~~n~c~~--~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 734 (748)
T KOG4151|consen 657 VVENHCSR--ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAP 734 (748)
T ss_pred cchhhhhh--HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhh
Confidence 55555443 3335789999999999999999999998888866544444455555555555544433344445555544
Q ss_pred HHH
Q 016280 249 GLL 251 (392)
Q Consensus 249 aL~ 251 (392)
.|.
T Consensus 735 ~l~ 737 (748)
T KOG4151|consen 735 CLS 737 (748)
T ss_pred HHH
Confidence 443
No 227
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.25 E-value=4.3 Score=44.61 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCC
Q 016280 118 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSE 196 (392)
Q Consensus 118 ~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~ 196 (392)
.+...+.+++.-+...++.+++.-+++.+-.++. +.++-.++.++..+.||.-+.---...|.. ..|++....++...
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence 4455566788877777777888777766444433 357889999999999999765433344444 57888888888888
Q ss_pred CHHHHHHHHHHHHHHhhcCCcchH-HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 197 SVKFQRKALNLIQYLLNENASDCS-VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 197 d~kl~~kA~~lLs~L~~~~~~~~~-~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.++...++..+..++......+. ...-..+...++.++.+++..+|...+..++++....
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~ 701 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL 701 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence 899999888888877766666665 3444477888899999999999999998888855444
No 228
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.18 E-value=19 Score=33.03 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=79.7
Q ss_pred ChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC----C---------------HHHHHHhhCCCCCHHHH
Q 016280 100 GLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN----G---------------LEPLLSNFASDPDVTVR 159 (392)
Q Consensus 100 gl~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g----~---------------l~~Ll~LL~s~~~~~vr 159 (392)
.-+.|+. ++..+++.+|..|+.+++.+-.+....=...-+.. . -..|+..|..+.+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4455665 45778999999999999999887432222222222 1 13466667777788888
Q ss_pred HHHHHHHHHhhcCCcccHHH-HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC
Q 016280 160 TKALGAISSLIRHNKPGIEA-FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA 216 (392)
Q Consensus 160 ~kAl~ALS~lvR~~~~~~~~-f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~ 216 (392)
...+-+++.++.+.|...-. -+...-+..+..++.+.|..++.-++.++..|+.-.+
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 99999999999887654311 1122334556666777899999999999998886543
No 229
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=19 Score=37.97 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=69.5
Q ss_pred HcCCHHHHHHhhC---CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 139 EANGLEPLLSNFA---SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR-DALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 139 ~~g~l~~Ll~LL~---s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
+.|.+..++..+. .+++..+|.-|+..|.++..+.|.....-.. --+..++ .+....+..|.-.|..+|..++..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 4566666554443 4567788888888888888775443322222 2333344 444455678888888877777632
Q ss_pred CCcchHHHHhcCch---HHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 215 NASDCSVVDKLGFP---RLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 215 ~~~~~~~l~~~G~v---~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
..+. -+..+++ -++..++.+.+.++|..+..+++.|+.
T Consensus 331 -~~~~--~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 331 -ASND--DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred -hhhc--chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 1111 1222333 456667789999999998888777754
No 230
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.64 E-value=3.6 Score=46.10 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=79.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC---HHHHHHHHHHHHHhhcCCcccH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD---VTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~---~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
+|.|++.|.-++..+|..+..+|.....-.+..+..-+. -.+|.|+.+ .++.+ ..||.-|+.++..+.|--|...
T Consensus 911 lPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 911 LPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 566678888899999999999999988877777664433 367888876 54444 6899999999999999555443
Q ss_pred HHHHHcChHHHHHHhhcCCCHHHHHHHHHH
Q 016280 178 EAFRLANGYAALRDALGSESVKFQRKALNL 207 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~l 207 (392)
-.-.....+..|...|.++...+|..|...
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 333356678889999988888888877654
No 231
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.50 E-value=93 Score=35.20 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=105.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL 182 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~ 182 (392)
+...+.+++-.-|..|+.-+-....+.. ..++ -..|.+-.++.....|.+..|...|+..|..|+.........| .
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~--~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVK--GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-A 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhcccccccc--CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-H
Confidence 4445667777788888888877777655 1222 1235567777877788888899999999999988877664444 5
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.+.++.|...+......++.-+..++-..+...+ -..+.+.++..+++..+.++..+...+.........
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 6778888888887777777666666655554221 124567888899999999999999998888776653
No 232
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.46 E-value=23 Score=38.79 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=89.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH
Q 016280 108 LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA 187 (392)
Q Consensus 108 L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~ 187 (392)
|.-.+.+.|..=..-|.....+ .=+.|...-.++.|+..+.-........-.++.+.-....-+ +..+-++
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~---~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~e------yq~~i~p 333 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDN---FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEE------YQVRIIP 333 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccc------cccchhh
Confidence 3445566665555555553333 335577777888888776654312222333444444333222 4677899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 188 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 188 ~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+|++++.+.|..+|.. ||.|+-.--.......++.-+++++...+.+.++.+||+++..+..|+..-
T Consensus 334 ~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 334 VLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred hHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999888874 555554332333445677789999999999999999999999888887643
No 233
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=82.44 E-value=6.7 Score=33.00 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=46.8
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC-HHHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD-VTVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~-~~vr~kAl~ALS~lvR~~ 173 (392)
+|.+...|. +..++.|..+..+++.++...+-..+ + +..|++.+..... ....+.++-+|..++.+.
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~-----l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-V-----LNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-H-----HHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 577778887 78899999999999999987764433 3 3344443332222 222588999999999765
No 234
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.98 E-value=7.4 Score=44.74 Aligned_cols=116 Identities=18% Similarity=0.238 Sum_probs=79.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHHc-C-CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQ---NNPRSQQLVMEA-N-GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~-g-~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
+..++.+|.+.+-.+|..-..++|+++- +++..-...-+. + .+..|..-+ .|.+.-||.|++.-...+++.+..
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl-~Dvsa~vRskVLqv~~~l~~~~s~ 392 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERL-LDVSAYVRSKVLQVFRRLFQQHSI 392 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHccCC
Confidence 4456677888888999999999999874 222211111111 1 233344332 346789999999999999987643
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC 219 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~ 219 (392)
....+ ...+...++-|.+++.-||++|..+++.++..+|...
T Consensus 393 p~~~~--~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~ 434 (1251)
T KOG0414|consen 393 PLGSR--TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSS 434 (1251)
T ss_pred CccHH--HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchh
Confidence 33222 3345666777888999999999999999998888654
No 235
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=81.31 E-value=12 Score=40.89 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSH--ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~--~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
+.+++..-+.-|.+.+++ .-.+++....++.|+..+...+ ..+...... +|....--+ .+.+.+|.|++
T Consensus 267 s~~eK~~Ff~~L~~~l~~--~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k-~~k~ld~~e------yq~~i~p~l~k 337 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDN--FPEEIIASKVLPILLAALEFGDAASDFLTPLFK-LGKDLDEEE------YQVRIIPVLLK 337 (690)
T ss_pred cHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhccccchhhhhHHHH-hhhhccccc------cccchhhhHHH
Confidence 456666666655553332 2578888888888887776554 223322222 222222212 34467899999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
++.. .|..+|...|.-|=..+++-. +..+..-.++.+...+.+++.-+|..++-.+..|+.- -... ......+
T Consensus 338 LF~~-~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k--L~~~-~Ln~Ell 410 (690)
T KOG1243|consen 338 LFKS-PDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK--LSKR-NLNGELL 410 (690)
T ss_pred HhcC-cchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh--hchh-hhcHHHH
Confidence 9887 588999998888888887654 3555777899999999999999999999998888742 1111 2223344
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
+.+..+-.+++..+|....-+|+.++.+
T Consensus 411 r~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHhhCccccCcccccceeeecccccc
Confidence 5555554444445555444444444433
No 236
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=81.24 E-value=6.4 Score=42.23 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHc-CCh----------HHHHHh-hc---CCCHHHHHHHHHHHHHHhhC--CHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSI-GGL----------APLLGY-LK---NSHANIRAKAGEVVTTIVQN--NPRS 133 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l-Ggl----------~~Ll~l-L~---s~~~~IR~~Aa~vLg~iaqN--Np~~ 133 (392)
.|+.+|+||++|.+++|+-+.-.-.+.+ |.+ ...++. ++ =.+.-||..|..+|+..+-| .+.+
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 6788999999999999987764433321 111 001111 11 13667999999999888765 4455
Q ss_pred HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280 134 QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 134 Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
++.| ..++.-..+|.|.+||-.|.+++-++=
T Consensus 524 ~~sv------~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 524 PQSV------ENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHH------HHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 5543 334444455688999999999999873
No 237
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=80.81 E-value=25 Score=35.83 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCcc------------cH
Q 016280 113 ANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKP------------GI 177 (392)
Q Consensus 113 ~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~~------------~~ 177 (392)
..-|..|+..|-.++.+.+. +...+. +.+..++.-..++ .+..-+-.|++.+++++-.... ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 34688999999999876442 222222 2355555433333 2345666789999988643311 24
Q ss_pred HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280 178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 250 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL 250 (392)
..|....-++-|. --.+..+-+|.+|+..+..+-..- ..+.+ .++++.++.+|.+++.-|+..|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l--~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL--PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 6666666666665 222456889999999999887542 23333 35899999999999999999998765
No 238
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.73 E-value=6.8 Score=41.18 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=57.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAISS 168 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS~ 168 (392)
+..|-+-|.+.++.++..|..+|-+|+.|+- .+...|.+.+.+.-+|.+.... .+..||.|++..|=.
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 4455567778788999999999999999965 6666788999999999999887 788999999887754
No 239
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.60 E-value=21 Score=38.64 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
-++.+...+-.+-++.-+-|-- .+|+. |-+..+++.+.+++..||.+.+.+|+.++.+--++-+ ++-.|.+.+|..-
T Consensus 63 i~dRil~fl~~f~~Y~~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R 140 (885)
T COG5218 63 IPDRILSFLKRFFEYDMPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSER 140 (885)
T ss_pred cHHHHHHHHHHHHHhcCCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHH
Confidence 3455555555555544343433 44443 5567777888899999999999999999877555544 5556777777765
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKAL 205 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~ 205 (392)
+-. -.+.||..|+.+|+-+- +-....+-++ ...|+.+++. ++..+|+-|+
T Consensus 141 ~~D-RE~~VR~eAv~~L~~~Q-e~~~neen~~----~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 141 LFD-REKAVRREAVKVLCYYQ-EMELNEENRI----VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred Hhc-chHHHHHHHHHHHHHHH-hccCChHHHH----HHHHHHHHhcCcHHHHHHHHH
Confidence 332 35789999999998764 2223333332 2255555554 4567776554
No 240
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=80.02 E-value=6.2 Score=36.45 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHcCChHHHHHhhcCC---C---------------HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280 93 NDLHSIGGLAPLLGYLKNS---H---------------ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 154 (392)
Q Consensus 93 ~d~~~lGgl~~Ll~lL~s~---~---------------~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~ 154 (392)
+-|-.+|....++.+|..+ . ..+-..+..+|...+.+|++.|..+.++ ++-++..+...
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~- 113 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL- 113 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-
Confidence 3444566666666665431 1 4677899999999999999999988876 44333333221
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
....-.-++.++.++.++|+.....+.+.. +..++.++.... -+.+-+.+|+.|+..
T Consensus 114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence 122224567888999999998888876555 888888876632 334566667777753
No 241
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=79.68 E-value=2.6 Score=42.06 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=87.5
Q ss_pred CChHHHHHcCChHHHHHhhc---CCCHHHHHHHHHHHHHHhhCCHHHHH------------------------------H
Q 016280 90 DMANDLHSIGGLAPLLGYLK---NSHANIRAKAGEVVTTIVQNNPRSQQ------------------------------L 136 (392)
Q Consensus 90 DnA~d~~~lGgl~~Ll~lL~---s~~~~IR~~Aa~vLg~iaqNNp~~Q~------------------------------~ 136 (392)
+.-..+.-+|-+.+.++.|. -++.+++..--.+=.++.||..+.-- .
T Consensus 270 ~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~ 349 (432)
T COG5231 270 GYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDM 349 (432)
T ss_pred chhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHH
Confidence 33444445665666666553 36778887777776777766432211 1
Q ss_pred HHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 137 VMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 137 vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
+.+. ..+..|..+++...+.+...-|..-|..++|..|.....+...||=..++.++.++|+++|-.|..++..+..
T Consensus 350 l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 350 LIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 1111 2356677777654444555667888999999999999999899999999999999999999999999887764
No 242
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.26 E-value=20 Score=29.76 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhc-
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHLAS- 236 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~- 236 (392)
-.+.+-.|+-+++..+.... ..+..|.+-|.+.+.+++.+|+.+|-+|+.+.... ...+....++..++.+..
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~ 91 (115)
T cd00197 17 DWPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKS 91 (115)
T ss_pred CHHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcc
Confidence 34556667777765533222 35677788888889999999999999999765543 334555556655554311
Q ss_pred -----CCChHHHHHHHHHHHHHH
Q 016280 237 -----SEDPDVREAALRGLLELA 254 (392)
Q Consensus 237 -----~~d~~v~E~aL~aL~~L~ 254 (392)
..+..||++++..+...+
T Consensus 92 ~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 92 KLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccccCCCChHHHHHHHHHHHHHh
Confidence 236788999888776543
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=78.40 E-value=26 Score=40.80 Aligned_cols=96 Identities=25% Similarity=0.199 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHH-HHHHHcCCHHHHH
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQ-QLVMEANGLEPLL 147 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN---Np~~Q-~~vl~~g~l~~Ll 147 (392)
.+-+..||+-|..|...+|--..+-. .+|.++.|+..+.+.||..|...|..+..+ -|..- ..|.++ .+|.|=
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence 35567888888888887765544433 378888999999999999999888776543 22222 223333 566666
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhh
Q 016280 148 SNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
.++.......||..-+..|+-++
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHH
Confidence 65444234456655555565554
No 244
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.25 E-value=48 Score=30.21 Aligned_cols=109 Identities=23% Similarity=0.201 Sum_probs=71.3
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
.++.++++..+ ++..+|..|+.-|+.++|..=.+... .+|.|+.+..+++..++.+|..++..|....++-...
T Consensus 9 yl~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLvnP~~-----cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLS-SDDSVRLAALQVLELILRQGLVNPKQ-----CVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCCChHH-----HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677776555 57899999999999999875433333 6789999999999999999999999998655443221
Q ss_pred HHhcCchHHHHHhh---cCCCh-HH---HHHHHHHHHHHHcCC
Q 016280 222 VDKLGFPRLMLHLA---SSEDP-DV---REAALRGLLELAREK 257 (392)
Q Consensus 222 l~~~G~v~~Lv~LL---~~~d~-~v---~E~aL~aL~~L~~~~ 257 (392)
=...| +.....+- ..+.. .. ....++.|..+...+
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~ 124 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN 124 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc
Confidence 11112 22222221 11111 11 566667777777744
No 245
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=10 Score=45.63 Aligned_cols=112 Identities=19% Similarity=0.135 Sum_probs=80.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
.+..++..|.++++.+|..++..++.++|--+. ...=....+.++.-+.+..|+-.|.--..|++|+-|+.-.....
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 355666778889999999999999999985331 11112345566666777678888999999999998864322222
Q ss_pred HHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhc
Q 016280 180 FRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~ 214 (392)
=....++.+|..+.+. .++.|++.++.+++.++..
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence 2235678888887765 4569999999999998854
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=77.08 E-value=58 Score=29.64 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=53.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN---NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN---Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
++.++++..+++..+|..|..+|+.+.+- ||.. .+|.|+.| ..++++.+|.+|...+..+...++.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL-~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIAL-ETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhh-hCCCChHHHHHHHHHHHHHHHHhHH
Confidence 56778888899999999999999987753 5521 47889987 5558999999999999999877654
No 247
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=76.98 E-value=75 Score=35.30 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchH--HHHhcCchHHHHHhhc-CCCh
Q 016280 165 AISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCS--VVDKLGFPRLMLHLAS-SEDP 240 (392)
Q Consensus 165 ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~--~l~~~G~v~~Lv~LL~-~~d~ 240 (392)
+|.++.-+++..-..|++.||...+..++.+. ...+++++...+.+++...+.... .+....+ ..+-.++. ..+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 45566777888889999999999999999974 589999999999999965433221 1111111 11222333 3445
Q ss_pred HHHHHHHHHHHHHHcCCCh
Q 016280 241 DVREAALRGLLELAREKAD 259 (392)
Q Consensus 241 ~v~E~aL~aL~~L~~~~~~ 259 (392)
+.-..|+..|..+..+++.
T Consensus 573 ersY~~~siLa~ll~~~~~ 591 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK 591 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc
Confidence 7788899999999888765
No 248
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.07 E-value=3.8 Score=41.47 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh-CCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 118 KAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF-ASDPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 118 ~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL-~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
+-...||.++-.++..|+.|.+.||++.++... -+|.++.++...++|+-.+..++..+++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 356689999999999999999999999877653 3567899999999999999999988887653
No 249
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=75.00 E-value=34 Score=39.30 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH---HHHHHcChH
Q 016280 110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI---EAFRLANGY 186 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~---~~f~~~gGl 186 (392)
|=+..+|+.|+|+|..++.--|+ .+..+.+++|+....+ .+...|.-..-|.+.++-+..... ..+ ..+-+
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l-~e~~i 628 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGL-DENRI 628 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhh-HHHHh
Confidence 45899999999999999987774 3455789999988665 467777777777777664432111 111 22222
Q ss_pred HHHHHhhc--------CC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 187 AALRDALG--------SE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 187 ~~L~~lL~--------s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
..+.+.+. .. ...++.-.+.++..+..........++..++-..+...+.+++ .+|+.+..++..+++
T Consensus 629 ~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 629 AGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 22211111 11 1344445555666665444433344455555555666664444 677777777777765
No 250
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.48 E-value=7.6 Score=31.57 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
+...+..|+++.+.||.++...|+.+...+. ..+.. ..++..++..|.. +|+-|=-.|+-+++.++.-++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 3456778899999999999999999998766 11222 2455556666554 6888999999999999987763
No 251
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=74.38 E-value=92 Score=34.79 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhc---CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 74 DIEDMLDELQEHVE---SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 74 ~~~~aL~~L~~lve---~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+.+.+|..+..+.. ...-+.++...=.++.++..++++..-+|.+||..|+++..+ .....+-..+......++
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl 508 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL 508 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH
Confidence 45667666666555 222234443333456666777888888999999999999543 223233333455556666
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG 194 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~ 194 (392)
.+ .+..|+..|.-|+.+++++.. .-.+| .+...+.+..+|.
T Consensus 509 ~n-n~lpv~ieAalAlq~fi~~~q-~h~k~-sahVp~tmekLLs 549 (970)
T COG5656 509 KN-NHLPVMIEAALALQFFIFNEQ-SHEKF-SAHVPETMEKLLS 549 (970)
T ss_pred hc-CCcchhhhHHHHHHHHHhchh-hhHHH-HhhhhHHHHHHHH
Confidence 65 467899999999999999873 23333 4444444444443
No 252
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.20 E-value=63 Score=36.20 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=96.2
Q ss_pred hhcCCCChHHHHHcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHH
Q 016280 85 HVESIDMANDLHSIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTK 161 (392)
Q Consensus 85 lve~iDnA~d~~~lGgl~~Ll~lL~s---~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~k 161 (392)
+.+..|.+.-|.. .++.-|.. ...-+|++.+|+||.-+.- ++...+ +.-.-..++.++....|..||-.
T Consensus 475 l~~~~dF~~Wl~~-----~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~-k~l~Y~a~lnLL~d~~D~vV~Lt 546 (978)
T KOG1993|consen 475 LSNILDFDKWLQE-----ALLPELANDHGNSRIIRRRVAWILGQWVSV--QQKLEL-KPLLYCAFLNLLQDQNDLVVRLT 546 (978)
T ss_pred HHhcCCHHHHHHH-----hhCHHhhhcccchhHHHHHHHHHHhhhhhe--echHhH-HHHHHHHHHHhcCccccceeehH
Confidence 3344466666633 22222222 2345899999999988761 111111 11122346677665557789999
Q ss_pred HHHHHHHhhcCCcccHHHHHH--cChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--
Q 016280 162 ALGAISSLIRHNKPGIEAFRL--ANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-- 236 (392)
Q Consensus 162 Al~ALS~lvR~~~~~~~~f~~--~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-- 236 (392)
++.++.-++-+.....+.|.. .+-+..+.++++. .....|...+.+++.|+....+...-. ...++..+-.|..
T Consensus 547 t~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~-~~~ivq~lp~LWe~s 625 (978)
T KOG1993|consen 547 TARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPY-ASTIVQYLPLLWEES 625 (978)
T ss_pred HHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHhhh
Confidence 999999999988888888864 5667777777775 346677788999999886533332100 0011111111211
Q ss_pred CCChHHHHHHHHHHHHHHc
Q 016280 237 SEDPDVREAALRGLLELAR 255 (392)
Q Consensus 237 ~~d~~v~E~aL~aL~~L~~ 255 (392)
.+++-+|-+.+.+|.+++.
T Consensus 626 ~~e~lLr~alL~~L~~lV~ 644 (978)
T KOG1993|consen 626 EEEPLLRCALLATLRNLVN 644 (978)
T ss_pred ccCcHHHHHHHHHHHHHHH
Confidence 3455566666777777654
No 253
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.23 E-value=29 Score=28.65 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l 192 (392)
+||.+|..=|-+=-.++--+-..+. ....+..|+.-+... +......++--|+.++++ +.+...+...|+...|.++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence 6788887665443333333333333 345677888877764 445788889999998875 6678888899999998887
Q ss_pred hcCCCHHHHHHHHHHH
Q 016280 193 LGSESVKFQRKALNLI 208 (392)
Q Consensus 193 L~s~d~kl~~kA~~lL 208 (392)
-..-++.++...-.++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 7666677766655444
No 254
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=71.98 E-value=43 Score=32.56 Aligned_cols=71 Identities=15% Similarity=0.358 Sum_probs=47.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH-HHHHHcCCHHH----HHHhhC-------CCCCHHHHHHHHHHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ-QLVMEANGLEP----LLSNFA-------SDPDVTVRTKALGAISS 168 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q-~~vl~~g~l~~----Ll~LL~-------s~~~~~vr~kAl~ALS~ 168 (392)
+|+++.++.+..+.+|.+++.++..+.++.+... ..+...|.... |..++. .+.+..+-..|.-|+-.
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 6888899999999999999999999999877554 22334454332 222222 12344566677777777
Q ss_pred hhc
Q 016280 169 LIR 171 (392)
Q Consensus 169 lvR 171 (392)
+++
T Consensus 201 L~~ 203 (282)
T PF10521_consen 201 LLK 203 (282)
T ss_pred HHH
Confidence 644
No 255
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=71.43 E-value=44 Score=32.51 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=68.5
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-HHHHHcChHHHHHHh----hc--------CCCHHHHHHHHHHH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI-EAFRLANGYAALRDA----LG--------SESVKFQRKALNLI 208 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~-~~f~~~gGl~~L~~l----L~--------s~d~kl~~kA~~lL 208 (392)
.+|+++.+++. .++.+|.+++..+..++.+.+... ..+...|-.+++... +. .+...+...|--++
T Consensus 120 iiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 57899998776 488999999999999998766544 235556655554443 33 23456777777777
Q ss_pred HHHhhc---CCc-c----hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 209 QYLLNE---NAS-D----CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 209 s~L~~~---~~~-~----~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
..|+.- .+. . ...++..|++..+...-..+++.++...++.|..++..
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 777532 111 1 12333334444333333333566777777666665554
No 256
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.31 E-value=26 Score=38.91 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHH---HHH-cC--Ch---------HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMAND---LHS-IG--GL---------APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ 135 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d---~~~-lG--gl---------~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~ 135 (392)
.++.++..|..|.+++|+-..-.. +.. +| |. ..+...+-=.+..+|+.|..+++.+..+++..+.
T Consensus 423 ~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~ 502 (865)
T KOG1078|consen 423 NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP 502 (865)
T ss_pred CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 457889999999999997654332 221 11 00 0111111113567999999999999876665544
Q ss_pred HHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280 136 LVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 136 ~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
. ++.|+.-...|.|.++|-.|.+++.++-
T Consensus 503 s------I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 S------ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred c------HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2 3344443345678999999999999986
No 257
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.10 E-value=1.1e+02 Score=32.02 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=31.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHH
Q 016280 108 LKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALG 164 (392)
Q Consensus 108 L~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ 164 (392)
++|+...--.+|..+|-.|+.|+ .++-+.+-+...+.-||+++.- -++..|+.+.+-
T Consensus 54 iqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIe 116 (594)
T KOG1086|consen 54 IQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIE 116 (594)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHH
Confidence 34444444556667777777663 3444545555566667766541 134456655543
No 258
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=71.00 E-value=16 Score=41.55 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh
Q 016280 113 ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192 (392)
Q Consensus 113 ~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l 192 (392)
+.||..+.-.+|.++--+.+.. ...+|.|++-|....+..+|.+.+-|++-+|-++..-.+ --+|.|...
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d-----~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD-----RYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH-----HhhHHHHHH
Confidence 3588888888998885544332 246888998888766788999999999999887653333 357889999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc-C--chHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 193 LGSESVKFQRKALNLIQYLLNENASDCSVVDKL-G--FPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 193 L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-G--~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
|..+++-+|+.+.-+|+.|++.+ +++- | +++.+..++ +.+++++--|=..++.+.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999742 2222 3 234444444 335566655554554443
No 259
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=70.52 E-value=18 Score=38.32 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=59.6
Q ss_pred HHHHHcCChHHHH-H---hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HHcCCHHHHHHhhCCCCCHHHHHHHHHHHH
Q 016280 93 NDLHSIGGLAPLL-G---YLKNSHANIRAKAGEVVTTIVQNNPRSQQLV-MEANGLEPLLSNFASDPDVTVRTKALGAIS 167 (392)
Q Consensus 93 ~d~~~lGgl~~Ll-~---lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~v-l~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS 167 (392)
..++-.|||+.+- . --.+.+..+|..|..+||.+++..|.. | -+.+.+..|.+-|. +.+.+++...-.|||
T Consensus 364 ~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l---~~~d~~li~~LF~sL~-~~~~evr~sIqeALs 439 (501)
T PF13001_consen 364 RPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL---FSKDLSLIEFLFDSLE-DESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc---ccccHHHHHHHHHHhh-CcchHHHHHHHHHHH
Confidence 3444567777761 0 123467899999999999999998854 3 23466777887774 457899999999999
Q ss_pred HhhcCCcccHH
Q 016280 168 SLIRHNKPGIE 178 (392)
Q Consensus 168 ~lvR~~~~~~~ 178 (392)
+++.++.....
T Consensus 440 sl~~af~~~~~ 450 (501)
T PF13001_consen 440 SLAPAFKDLPD 450 (501)
T ss_pred HHHHHHhcccc
Confidence 99987765433
No 260
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=70.22 E-value=30 Score=38.39 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=99.1
Q ss_pred cCCCChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCH--HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHH
Q 016280 87 ESIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNP--RSQQLVMEANGLEPLLSNFASDPDVTVRTKAL 163 (392)
Q Consensus 87 e~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp--~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl 163 (392)
++.++...|.+.||+..+..+++. .+.+++..+..++++++---+ ..+..+.... ...+-.++....+.+.-..|.
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~ersY~~~ 579 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSIERSYNAA 579 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchhhHHHHHH
Confidence 355788999999999999999986 788899999999999985321 1222111111 011222223322334555555
Q ss_pred HHHHHhhcCCc-----------------------ccHHHHHHcChHHH-HHHhhc-CCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 164 GAISSLIRHNK-----------------------PGIEAFRLANGYAA-LRDALG-SESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 164 ~ALS~lvR~~~-----------------------~~~~~f~~~gGl~~-L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
.-|+.++-+.+ .....+....-+.. +.+++. +.....+..|+|.+.++++.+++.
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~ 659 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEY 659 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhh
Confidence 55555554321 11111112222222 444444 456788899999999999998888
Q ss_pred hHHHHhcCchHHHHHhhcC-CChHHHHHHHHHH
Q 016280 219 CSVVDKLGFPRLMLHLASS-EDPDVREAALRGL 250 (392)
Q Consensus 219 ~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL~aL 250 (392)
...+.+.|+++.+..+-.. ...++++.+...+
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 660 CKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred hhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 8888888988888776432 2444555554443
No 261
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=70.05 E-value=62 Score=36.27 Aligned_cols=137 Identities=18% Similarity=0.136 Sum_probs=93.7
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChH
Q 016280 107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186 (392)
Q Consensus 107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl 186 (392)
.|.+-...||.+|+..+..++.-.- .+.. . ...++.++.....+ +-.+|...+++|..++-=. -+.|....=+
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~-~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~---g~ei~~~~Ll 598 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFG-SEWA-R-LEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVL---GQEITCEDLL 598 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhC-cchh-H-HHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHh---ccHHHHHHHh
Confidence 3444456899999988888776433 1121 1 23577777775553 5678888899988776322 2344456678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 187 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 187 ~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
+++.++.....+.||.+++..+..+..- ......+.-+.+.+..|..+++.+++-.|.-++..+
T Consensus 599 p~~~~l~~D~vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 599 PVFLDLVKDPVANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHhccCCchhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 8888998899999999999999888742 222444555667777777788888887777666554
No 262
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.34 E-value=46 Score=37.48 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=54.1
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 106 GYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 106 ~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.-++.++...|..++..+|.++|-+. .+++.+.+ .+..++.+...|...-+|+.|+.-|..+.++-..-.-.|
T Consensus 854 ~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 854 SGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI 927 (982)
T ss_pred HhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence 33455666779999999999999655 45565554 466778887777788999999999999998755333333
No 263
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=68.17 E-value=23 Score=35.36 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHcC--CHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCcccH
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVMEAN--GLEPLLSNFASD--PDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g--~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
.+|-.|..++..+. .++..+..+++.+ .+.-|++++..+ ....+|..|+++|.+++++.....
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~ 303 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCS 303 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHH
Confidence 34555555555444 5677888899887 889999998753 456899999999999998765433
No 264
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=66.39 E-value=75 Score=35.52 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=54.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD 218 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~ 218 (392)
|..|..+ ..++=++|+.+++..|-.|+.+.|..... -+..|+.-|..++.++-.+|..+|..|...+|.-
T Consensus 306 ievLe~l-S~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 306 IEVLEEL-SKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHH-ccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 4444443 56666799999999999999987764443 4566788888999999999999999998877754
No 265
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.29 E-value=53 Score=27.11 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh
Q 016280 157 TVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA 235 (392)
Q Consensus 157 ~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL 235 (392)
++|..|+--|=+=.-++--....+. ...-+..|...++.++.-.+.++..++..|+. .+.....+.+.|.++.|.++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 4666666655442222222223332 23344455666667777799999999999886 577788999999999877776
Q ss_pred cCCChHHHHHHHHHH
Q 016280 236 SSEDPDVREAALRGL 250 (392)
Q Consensus 236 ~~~d~~v~E~aL~aL 250 (392)
..-++.++...-..+
T Consensus 81 ~~~~~~~~~~id~il 95 (98)
T PF14726_consen 81 PNVEPNLQAEIDEIL 95 (98)
T ss_pred hcCCHHHHHHHHHHH
Confidence 666666665554443
No 266
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.74 E-value=67 Score=31.89 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHhhcCC--CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHHcCCHHH
Q 016280 71 TPQDIEDMLDELQEHVESI--DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEP 145 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i--DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~g~l~~ 145 (392)
.+..+..++..|...+... +.... .+..+..-+....+.+|..-...+|.+.. |.. .-. +. ...++.
T Consensus 36 nE~aL~~~l~al~~~~~~~~~~~~~~-----~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~-~~~-~~-~~~~~~ 107 (339)
T PF12074_consen 36 NEAALSALLSALFKHLFFLSSELPKK-----VVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD-SLK-FA-EPFLPK 107 (339)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCHH-----HHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch-HHH-HH-HHHHHH
Confidence 3444556666666655444 11222 24555666777777799999999999887 322 211 22 236788
Q ss_pred HHHhhCCC---CCHHHHH---HHHHHHHHhhcCCcccHHHHHHcChHHHHHHh--hcCC-----CHHHHHH---------
Q 016280 146 LLSNFASD---PDVTVRT---KALGAISSLIRHNKPGIEAFRLANGYAALRDA--LGSE-----SVKFQRK--------- 203 (392)
Q Consensus 146 Ll~LL~s~---~~~~vr~---kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l--L~s~-----d~kl~~k--------- 203 (392)
|++.+... +-...+. -+.|++-.+.+........ -...... +..+ ++|+-.|
T Consensus 108 L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~------~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w 181 (339)
T PF12074_consen 108 LLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDS------KNISFWSLALDPKPSFLLSEKVYSKLASEEDLCW 181 (339)
T ss_pred HHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhh------hhhhhhhhccCCCcchhcCHHHHhccCCHhHHHH
Confidence 88877421 2122221 2223332211111111110 0000111 1111 2455555
Q ss_pred HHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCChh
Q 016280 204 ALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 204 A~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
.+.++..+..+.......-....+-+.++.++-+. ...+|..|+.+|..+....+..
T Consensus 182 ~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 182 LLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 44444444433222211111234566788888887 8899999999999998888764
No 267
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=64.70 E-value=97 Score=27.04 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHH-HHHhh
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRL-MLHLA 235 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~-Lv~LL 235 (392)
-....-.|+-+++..+.+. ..++..|.+=|. +.+++++..|+.+|-.++.+... ....+....++.. |+.++
T Consensus 18 dw~~ileicD~In~~~~~~-----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i 92 (141)
T cd03565 18 DWGLNMEICDIINETEDGP-----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLI 92 (141)
T ss_pred CHHHHHHHHHHHhCCCCcH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHH
Confidence 3455666777776543322 236667777666 46899999999999999876543 3445667789987 89988
Q ss_pred cC---CChHHHHHHHHHHHHHHcCC
Q 016280 236 SS---EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 236 ~~---~d~~v~E~aL~aL~~L~~~~ 257 (392)
.. .+..|+.+++..+.+.+...
T Consensus 93 ~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 93 NPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHh
Confidence 63 35689999999998887654
No 268
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=64.62 E-value=33 Score=32.66 Aligned_cols=175 Identities=17% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHHHhhcCCCChHH---HHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC-C-HHHHHHhh---CC
Q 016280 81 ELQEHVESIDMAND---LHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN-G-LEPLLSNF---AS 152 (392)
Q Consensus 81 ~L~~lve~iDnA~d---~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g-~-l~~Ll~LL---~s 152 (392)
.|..++........ +.... ...++..+.+=..+-+--+..++.-++-+.+.. ..+...+ + ...+..++ ..
T Consensus 43 ~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 120 (268)
T PF08324_consen 43 SLESLLSALKSTSAYHSDLSAW-LILLLKILLSWPPESRFPALDLLRLAALHPPAS-DLLASEDSGIADLLSTLISSGSS 120 (268)
T ss_dssp HHHHHHCCCCCC-SS---HHHH-HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHH-HHHHSTTTH-HHHHHHHHHCCTT
T ss_pred HHHHHHHHhcCCCccccchhHH-HHHHHHHHHhCCCccchhHHhHHHHHHhCccHH-HHHhccccchHHHHHHHHHhccC
Confidence 35555655544322 11111 344455555534445777888888777754433 3333322 1 23333332 22
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh--H-HHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcch-HHHHhc
Q 016280 153 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--Y-AALRDALGSE---SVKFQRKALNLIQYLLNENASDC-SVVDKL 225 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG--l-~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~-~~l~~~ 225 (392)
......+.-++..++|+..+ +.....+..... + ..+..+..+. +..+|.-++.++.+++-...... ..=...
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSH-PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CCcHHHHHHHHHHHHHhhCC-CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 35678888999999999876 455555554433 2 2333333333 68899999999998863211111 000111
Q ss_pred CchHHHHH-hhcC-CChHHHHHHHHHHHHHHcCCC
Q 016280 226 GFPRLMLH-LASS-EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 226 G~v~~Lv~-LL~~-~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.++..+++ +... .|.+..-.++-||++++...+
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 23455555 3333 689999999999999996554
No 269
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=63.91 E-value=55 Score=28.09 Aligned_cols=88 Identities=20% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcCC
Q 016280 161 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSE 238 (392)
Q Consensus 161 kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~~ 238 (392)
...--|+.++++++..... ....|.+-|+.+++.|+.|++.+|.|||...+......... -+|+.+.+.-..+
T Consensus 20 y~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPP 94 (122)
T ss_pred HHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 3445677777775433333 45677888888889999999999999998876554333322 3455555443322
Q ss_pred C--------hHHHHHHHHHHHHH
Q 016280 239 D--------PDVREAALRGLLEL 253 (392)
Q Consensus 239 d--------~~v~E~aL~aL~~L 253 (392)
| ..||+.|-.++..|
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHH
Confidence 2 23666665555444
No 270
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=63.61 E-value=32 Score=30.65 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=89.1
Q ss_pred hhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc--ccHHHHHHcChHHHHHHhh-cCCCHHHHHH
Q 016280 127 VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK--PGIEAFRLANGYAALRDAL-GSESVKFQRK 203 (392)
Q Consensus 127 aqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~--~~~~~f~~~gGl~~L~~lL-~s~d~kl~~k 203 (392)
=||++.+=+.++|.+.+..+++++.......++...+..+|=++.+-. .+...+...+-+.-++..- .-.+..+..-
T Consensus 12 Dq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~y 91 (149)
T PF09758_consen 12 DQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSY 91 (149)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHH
Confidence 368888889999999999999999886778999999999999987632 3333444566666665553 3346777777
Q ss_pred HHHHHHHHhhc-CCcchHHHHhc--C---chHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 204 ALNLIQYLLNE-NASDCSVVDKL--G---FPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 204 A~~lLs~L~~~-~~~~~~~l~~~--G---~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
=..+|..|+.. ++.....+... + +....+.+..++|.-+|.++-..+.++.
T Consensus 92 YIsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 92 YISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 77888877632 33333333322 3 3344566777888888888877776654
No 271
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=63.51 E-value=1.3e+02 Score=28.28 Aligned_cols=129 Identities=18% Similarity=0.098 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
.+++-....|..|-.++..- .+..-+ +..|..+...+....+.-+...+..+...++.+- +.+..++.
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~ 81 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLL 81 (234)
T ss_pred CChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHH
Confidence 34556667788888877755 333333 4555666677788888888999999988877553 33444444
Q ss_pred h---------hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-cCCCHHHHHHHHHHHHHHhhc
Q 016280 149 N---------FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 149 L---------L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-~s~d~kl~~kA~~lLs~L~~~ 214 (392)
. ...+...+.......++..+|+..|. .-..-+..|..+| ++.+...+.-+..+|+.|+..
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3 11112234445555677778877765 2233456677888 788899999999999999943
No 272
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=62.46 E-value=2.1e+02 Score=30.25 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=102.8
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
+..++.-+......+-+..|++-|=.+..........-.-.--+..+...|.. .+.-.+.-|+..|+-+++..+. .
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~ 364 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---R 364 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---h
Confidence 34445444544445667777776666655544443221123345667777876 7888999999999999986544 2
Q ss_pred HHhc--CchHHHHHhhcCCChHHHHHHH-HHHHHHHcCCChh----hhhhhhh-hHHHH---HHHHHHHHhhhcCCChhh
Q 016280 222 VDKL--GFPRLMLHLASSEDPDVREAAL-RGLLELAREKADG----SAIKLAE-DNEKL---KQLLGERIKGISLMSPED 290 (392)
Q Consensus 222 l~~~--G~v~~Lv~LL~~~d~~v~E~aL-~aL~~L~~~~~~~----~~~~~~~-~~~~L---~~~L~~~~~~i~~~~~ed 290 (392)
+.+. =.|..+++.-.+.+..+...|. .++..++++.|.. ...++.. ..... .+.+...++.|. .|.
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~---~Ee 441 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLS---AEE 441 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC---HHH
Confidence 3222 2344455555555555443333 4455566666632 1111111 11111 222233333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccceeeccCCCCCCccccc-cccCCchhhhc
Q 016280 291 LGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVAS-KHFEPPLRAWA 346 (392)
Q Consensus 291 ~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 346 (392)
+--.-. ++.--+++.|=+..+.+||.++.-|=- -=-+.| +.|+|-|+.+.
T Consensus 442 L~~ll~--diaP~~iqay~S~SS~VRKtaVfCLVa----mv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 442 LLNLLP--DIAPCVIQAYDSTSSTVRKTAVFCLVA----MVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred HHHhhh--hhhhHHHHHhcCchHHhhhhHHHhHHH----HHHHHhHHhhhhHhhhcc
Confidence 222211 445566777888888899985432200 012457 88999988775
No 273
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.42 E-value=30 Score=39.51 Aligned_cols=110 Identities=11% Similarity=0.136 Sum_probs=81.8
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
++..+++-+..+....++..|..-+-+...++..+. .| ..|+.+|..+..+.-..++.++|..|..+....+-..
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~-~f--e~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-- 651 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEAS-KF--EVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-- 651 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhh-cc--hhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh--
Confidence 455566666655556788888888888877765432 22 3358888888888889999999999999887654432
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
-++..++..|+.++...+.+++|+|+..|..+...
T Consensus 652 ~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 24557888899999999999999999877766543
No 274
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=62.19 E-value=1.1e+02 Score=27.68 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHH
Q 016280 198 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLG 277 (392)
Q Consensus 198 ~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~ 277 (392)
..+|.-|-.+++.|+........ +. .+...+..-|.+ +.+++..+...|..++.-.|..+...+......|+.+|.
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 56677676778888765333322 11 235566666666 999999999999999999987665544556677777777
Q ss_pred HHHhh
Q 016280 278 ERIKG 282 (392)
Q Consensus 278 ~~~~~ 282 (392)
...+.
T Consensus 117 ~k~k~ 121 (169)
T PF08623_consen 117 KKLKE 121 (169)
T ss_dssp ----T
T ss_pred ccCCC
Confidence 65554
No 275
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=62.02 E-value=12 Score=34.61 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHhhCCCC--------------C---HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh
Q 016280 131 PRSQQLVMEANGLEPLLSNFASDP--------------D---VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL 193 (392)
Q Consensus 131 p~~Q~~vl~~g~l~~Ll~LL~s~~--------------~---~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL 193 (392)
..-|..+.+.|++..++.++...- + ..+-..+..-|..+|+++..++..+... ++.+...+
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHH
Confidence 356666667787777777765311 1 2456677788889999999888887665 22222222
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 194 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 194 ~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.......-.-+.-++..+..+++.....+.+.- |..++.++.... -+..-+..|..|+..+.
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVCNG 172 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred HHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhcccCC
Confidence 222222223567788889888888776665544 888888887633 23345666666665443
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=61.36 E-value=68 Score=30.88 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHh
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-----SHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-----~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~L 149 (392)
-.+|..|+=++...+...-|.+.-.--.+..+|+. ...-+|-.+..+||.+++|. +.+-..++....+|.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 35666666666666677777766533334466642 35679999999999999985 4566656667899999998
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcC
Q 016280 150 FASDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~ 172 (392)
+... ++--+.-|++-+.-++-+
T Consensus 198 me~g-SElSktvaifI~qkil~d 219 (315)
T COG5209 198 MELG-SELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHhh-hHHHHHHHHHHHHHHhcc
Confidence 7764 444556666666655543
No 277
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.89 E-value=2.5e+02 Score=31.49 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=71.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc---CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA---NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~---g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
+-+..+..||.++.+.||..|..=+..+..- .-+.+=.. ..+.++..-+..++..+||....-.|--++- +|.
T Consensus 220 kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~ 295 (1005)
T KOG1949|consen 220 KQFEELYSLLEDPYPMVRSTAILGVCKITSK---FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPL 295 (1005)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Ccc
Confidence 3456677888899999999887776665531 22211111 2344444445566677899888888877774 344
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLL 212 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~ 212 (392)
....| .-|++.|-..|+....+||..+..+|.-+-
T Consensus 296 sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 296 SHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred chhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33333 337788888899999999998888887764
No 278
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.12 E-value=1.4e+02 Score=34.20 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=78.1
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYLK----NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~----s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
.-|+.|-+++|-+ --|+..|. ..++-++. -.+.-+--.+...|+.++-+|... ..|++.||+.+|+..=.-
T Consensus 331 q~l~~lgey~e~l---pv~~~~g~-~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa-~~fv~~~gi~kll~vpr~ 405 (1516)
T KOG1832|consen 331 QCLEILGEYVEVL---PVLHEKGV-DVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFA-AMFVERRGILKLLAVPRV 405 (1516)
T ss_pred HHHHHHHhHHHHH---HHHHHhCc-hhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHH-HHHHHhhhhHHHhcCCCc
Confidence 4466666666644 56777764 44443332 245557778889999999887755 558899999999887221
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHH------HHcChHHHHHHhhcCC------CHHHHHHHHHHHHHHhhcCCcchH
Q 016280 153 DPDVTVRTKALGAISSLIRHNKPGIEAF------RLANGYAALRDALGSE------SVKFQRKALNLIQYLLNENASDCS 220 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f------~~~gGl~~L~~lL~s~------d~kl~~kA~~lLs~L~~~~~~~~~ 220 (392)
.....=...++|.||++- ...+.+ +....+..-+.+|... +..+--.+||.++.++ +
T Consensus 406 s~~~~g~s~cly~~~~~q----~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail-------~ 474 (1516)
T KOG1832|consen 406 SETFYGLSSCLYTIGSLQ----GIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAIL-------D 474 (1516)
T ss_pred hhhhhhHHHHHHHHhhhh----hHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHH-------H
Confidence 111122345566666531 112221 2233444444455432 2233333444444443 2
Q ss_pred HHHhcCchHHHHHhhc
Q 016280 221 VVDKLGFPRLMLHLAS 236 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~ 236 (392)
.|-....++.|+.+|+
T Consensus 475 ~fd~~d~l~~l~~~~~ 490 (1516)
T KOG1832|consen 475 AFDAQDSLQKLLAILK 490 (1516)
T ss_pred HHhhhhHHHHHHHHHH
Confidence 4445556667776664
No 279
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=60.09 E-value=1.9e+02 Score=29.00 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHH-HHHHHHHHHHhCCCccccccceeeccC
Q 016280 270 EKLKQLLGERIKGISLMSPEDLGAAREER-HLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 270 ~~L~~~L~~~~~~i~~~~~ed~~~~~ee~-~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
.+..+.|+.-+.........|.++.|.++ +.+-+| -++|-.+|.+
T Consensus 285 ~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L-----------~~~G~I~l~~ 330 (338)
T TIGR00207 285 QRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKL-----------EETGEIVIGR 330 (338)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-----------HHCCCEEecC
Confidence 33455555555555555677888888765 223333 3467777754
No 280
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.76 E-value=1.4e+02 Score=33.52 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=83.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHh-hcCCcccH--HHH
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSL-IRHNKPGI--EAF 180 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~l-vR~~~~~~--~~f 180 (392)
+..++.+....=|..|..+ ++|.+|. .....|..||.+..+. ...-...++-||.-+ +++.-|.+ ..|
T Consensus 201 l~siiSsGT~~DkitA~~L---lvqesPv-----h~lk~lEtLls~c~KK-sk~~a~~~l~~LkdlfI~~LLPdRKLk~f 271 (988)
T KOG2038|consen 201 LYSIISSGTLTDKITAMTL---LVQESPV-----HNLKSLETLLSSCKKK-SKRDALQALPALKDLFINGLLPDRKLKYF 271 (988)
T ss_pred HHHHHhcCcchhhhHHHHH---hhcccch-----hHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhccCcchhhHHH
Confidence 3456666666666555554 5677762 2233466677765542 334444555555543 33322211 111
Q ss_pred HH-----------------------------cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 181 RL-----------------------------ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 181 ~~-----------------------------~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
.. ..-+.+|..+-+.+-..++.+++..++.|+...|+.-. .++..|
T Consensus 272 ~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~l 346 (988)
T KOG2038|consen 272 SQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLL 346 (988)
T ss_pred hhChhhhccccccccceehHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHH
Confidence 11 12233444444445588999999999999987776533 445667
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 232 LHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 232 v~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
|+-|-+++..+-..|-..|.+|....|
T Consensus 347 VNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 347 VNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 777778888888888888888877776
No 281
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=59.55 E-value=12 Score=31.45 Aligned_cols=44 Identities=20% Similarity=0.461 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHH
Q 016280 74 DIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRA 117 (392)
Q Consensus 74 ~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~ 117 (392)
++...+..|.-+....+.=-.|+++|+++.|+.||.|++.+|..
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34455666666777778888999999999999999999988754
No 282
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=58.73 E-value=14 Score=32.89 Aligned_cols=104 Identities=21% Similarity=0.198 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 016280 49 KRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIV 127 (392)
Q Consensus 49 ~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~ia 127 (392)
++..+.++++++|.. .+.+.+++-|.+.|-.- |-| .-+|.+.+.-++.-=.+...--+..|..+||++.
T Consensus 22 ~Qt~~lielLk~~~~---------~~~~~lldLL~~RV~PGVD~A-A~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~ 91 (154)
T PF11791_consen 22 EQTAELIELLKNPPA---------GEEAFLLDLLTNRVPPGVDEA-AYVKAEFLAAIAKGEISSPLISPAEAVELLGTML 91 (154)
T ss_dssp HHHHHHHHHHHS--T---------T-HHHHHHHHHHSS--TT-HH-HHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-
T ss_pred HHHHHHHHHHhCCCC---------ccHHHHHHHHHhcCCCCCChH-HHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhcc
Confidence 445555555555432 12234556666655544 333 3344444444443211122223667888888876
Q ss_pred hCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 128 QNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 128 qNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
..- -+.+||.+|.++ +..+...|.-+|++.+-=+.
T Consensus 92 GGY-----------NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 92 GGY-----------NVQPLIDLLKSD-DEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp SST-----------THHHHHHGG--G--TTTHHHHHHHHHT--TTCC
T ss_pred CCC-----------cHHHHHHHHcCC-cHHHHHHHHHHHHhhHHHHh
Confidence 431 267899998764 56788999999998665443
No 283
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.11 E-value=82 Score=27.04 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=53.9
Q ss_pred HHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC--hHHHHHHhhcCC----
Q 016280 123 VTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN--GYAALRDALGSE---- 196 (392)
Q Consensus 123 Lg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g--Gl~~L~~lL~s~---- 196 (392)
|+.++.+++.....| +..|++-|.. .++.|+.|+|-.|-.+|++.++.....+..+ .|..+...-...
T Consensus 25 ia~~t~~s~~~~~ei-----~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 25 IAKLTRKSVGSCQEL-----LEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHcCHHHHHHH-----HHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 444555554333334 4457777776 5689999999999999998765554444433 333333332211
Q ss_pred ----CHHHHHHHHHHHHHHhhc
Q 016280 197 ----SVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 197 ----d~kl~~kA~~lLs~L~~~ 214 (392)
...||..|--++..|...
T Consensus 99 Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhcc
Confidence 368888888888877643
No 284
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=57.88 E-value=69 Score=35.91 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=90.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHH
Q 016280 109 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA 188 (392)
Q Consensus 109 ~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~ 188 (392)
......+|..++..+-+++.-.++.+. .+ -+-+|+..+..+.--+-|..+....+... ......++...-.+.
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~--~~--~lv~l~~~l~~~d~~~sr~sacglf~~~~---~~~~~~~vk~elr~~ 241 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKL--RE--HLVPLLKRLATGDWFQSRLSACGLFGKLY---VSLPDDAVKRELRPI 241 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHH--HH--HHHHHHHHccchhhhhcchhhhhhhHHhc---cCCChHHHHHHHHHH
Confidence 345667899999999888887765555 12 23445555554311122333333333332 222224445556666
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 189 LRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
..++-+...+.++.-++.-+..++..-. ...+..++++.+.+|..++...||+.|...+.++..-.
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhc
Confidence 6677777778888888887777765322 26677799999999999999999999998888876543
No 285
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=57.66 E-value=2.1e+02 Score=32.09 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=86.6
Q ss_pred cCChHHHHHhhc-C----C---CHHHHHHHHHHHHHHhh---CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHH
Q 016280 98 IGGLAPLLGYLK-N----S---HANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAI 166 (392)
Q Consensus 98 lGgl~~Ll~lL~-s----~---~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~AL 166 (392)
.|.++.++..|. + + ++--.+-|..+++++.. -+... ..++++=.+++++-.+.+ +---++..|.+.|
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~-an~me~fiv~hv~P~f~s-~ygfL~Srace~i 484 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPA-ANVMEYFIVNHVIPAFRS-NYGFLKSRACEFI 484 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchH-HHHHHHHHHHHhhHhhcC-cccchHHHHHHHH
Confidence 455666667773 1 1 22233445566665543 22223 235555455555555554 3457889999999
Q ss_pred HHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcCCChHHHH
Q 016280 167 SSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSEDPDVRE 244 (392)
Q Consensus 167 S~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~~d~~v~E 244 (392)
|-+-..++. ..+....++....+|++.+.-|+..|+-++..+..++.. -..+-++ +.++.|+.|-+.-+.++..
T Consensus 485 s~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~-h~k~sahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 485 STIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS-HEKFSAHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh-hHHHHhhhhHHHHHHHHhcccccchHHH
Confidence 988555443 333456777788899998899999999999999976522 2222222 3444455554455666555
Q ss_pred HHHHH
Q 016280 245 AALRG 249 (392)
Q Consensus 245 ~aL~a 249 (392)
.++..
T Consensus 561 ~vMe~ 565 (970)
T COG5656 561 MVMES 565 (970)
T ss_pred HHHHH
Confidence 55543
No 286
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=57.25 E-value=1.7e+02 Score=30.37 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=80.5
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCS 220 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~ 220 (392)
.+..+|.-..++....-....+..++-.+...+.+ ..+++..|.+-|...++.|...|+.++-.++..... .+.
T Consensus 8 ~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~-----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 8 PFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDG-----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred hHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcc-----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 34445544444444444556677777777666533 234788888889999999999999999999865443 355
Q ss_pred HHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCC
Q 016280 221 VVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+....|...|..++. +.++.|+++.-.++.+.+..+
T Consensus 83 EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 83 EVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 6677788888989988 788999999888888877743
No 287
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.15 E-value=3.3e+02 Score=30.66 Aligned_cols=247 Identities=21% Similarity=0.251 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHh-hcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHH--Hhh-CCHHHHHHHHHcCCHHHHHH
Q 016280 73 QDIEDMLDELQEH-VESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTT--IVQ-NNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 73 e~~~~aL~~L~~l-ve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~--iaq-NNp~~Q~~vl~~g~l~~Ll~ 148 (392)
++...|+..|..+ ..+||.-..-..+-++...+.-|+++...+...+...-+. .+. -.-.+|+.+-+++++..=++
T Consensus 650 qeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lk 729 (1104)
T COG4913 650 QEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLK 729 (1104)
T ss_pred HHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666554 3478888877888889999999998776655433322211 111 12367777778877765221
Q ss_pred -------hhCCCCCHHHHHHHHHHHHHh-hcCCccc---HHH-HHHcChHH---HHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 149 -------NFASDPDVTVRTKALGAISSL-IRHNKPG---IEA-FRLANGYA---ALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 149 -------LL~s~~~~~vr~kAl~ALS~l-vR~~~~~---~~~-f~~~gGl~---~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
-+.+-.+..+ ..++-.+ ..+++.. +.. .++.--+. -|-+-+...+.++|+---..+..|.+
T Consensus 730 rA~~~~~k~~si~~~~~----t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~ 805 (1104)
T COG4913 730 RAAMLSRKVHSIAKQGM----TGALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSD 805 (1104)
T ss_pred HHHHHHHHHhhhhhhhh----hHHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111111 1122211 111 11111111 11222222344444433333444433
Q ss_pred cCCcchHHHHhcC----chHHHHHhhcC-CChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCCh
Q 016280 214 ENASDCSVVDKLG----FPRLMLHLASS-EDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSP 288 (392)
Q Consensus 214 ~~~~~~~~l~~~G----~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ 288 (392)
-.+.......++| .||--+..|.. ....+-|..++...-|-..+...+...+++.... +.++++|++.|.
T Consensus 806 ~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~llN~~S~~~v~q~~~~L~~e-r~~IeERIe~IN---- 880 (1104)
T COG4913 806 AKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLLSHLDHE-RALIEERIEAIN---- 880 (1104)
T ss_pred HHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHHHHHHHHHHH----
Confidence 3333344444443 33333333331 2233444444444433333332332222222222 445555555444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccCCCCCCccccccccCCchhhhcc
Q 016280 289 EDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGEDAPPPDVASKHFEPPLRAWAA 347 (392)
Q Consensus 289 ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (392)
++|-..-|++.--|. |---++|-||---+.|.--||+...
T Consensus 881 -------------~SL~~vdfn~gRylh------Idi~kQp~p~~~~R~fqq~lra~ts 920 (1104)
T COG4913 881 -------------DSLRRVDFNSGRYLH------IDIAKQPVPHDSMRTFQQALRALTS 920 (1104)
T ss_pred -------------HHHhhccccCCceEE------eecccCCCccHHHHHHHHHHHHhhc
Confidence 577788888866552 3334478898888999999999864
No 288
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=56.99 E-value=1.5e+02 Score=29.41 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=86.9
Q ss_pred HHHHHHHcCCHHHHHHhhCC------C----------------CCHHHHHHHHHHHHHhhcCCccc--------------
Q 016280 133 SQQLVMEANGLEPLLSNFAS------D----------------PDVTVRTKALGAISSLIRHNKPG-------------- 176 (392)
Q Consensus 133 ~Q~~vl~~g~l~~Ll~LL~s------~----------------~~~~vr~kAl~ALS~lvR~~~~~-------------- 176 (392)
+|..+.+.|.+|.|-+++++ . ++..+|..-+..|-++|.++...
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 47788889999888777652 1 12257778888888888743211
Q ss_pred -----HHHH--HHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCc--chHHHHhcCchHHHHHhhcCC---ChHH
Q 016280 177 -----IEAF--RLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENAS--DCSVVDKLGFPRLMLHLASSE---DPDV 242 (392)
Q Consensus 177 -----~~~f--~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~~~~--~~~~l~~~G~v~~Lv~LL~~~---d~~v 242 (392)
.... ...|=+.-|++.+.. .+...|-.-+.++-.++++.+. .+..+.+.|+++.++..+-++ +..+
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence 1111 022334445555543 3678888888889999987665 455788999999999976644 3468
Q ss_pred HHHHHHHHHHHHcCCCh
Q 016280 243 REAALRGLLELAREKAD 259 (392)
Q Consensus 243 ~E~aL~aL~~L~~~~~~ 259 (392)
..-.--.|+.|.+.+..
T Consensus 161 ~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 161 LQSNFDLLGELIKFNRD 177 (303)
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 88888999999998863
No 289
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=56.97 E-value=3.4e+02 Score=30.80 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhhcCCC-----ChHHHHHcCC--------hHHHHHhhcCC----CHHHHHHHHHHHHHHhhCCHHHHH
Q 016280 73 QDIEDMLDELQEHVESID-----MANDLHSIGG--------LAPLLGYLKNS----HANIRAKAGEVVTTIVQNNPRSQQ 135 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iD-----nA~d~~~lGg--------l~~Ll~lL~s~----~~~IR~~Aa~vLg~iaqNNp~~Q~ 135 (392)
+--+..|+.++.++.... ....+....| +..|+..++++ ++.+...-+.+|+.++-.++..-+
T Consensus 186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~ 265 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD 265 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence 334555666665555332 2222233444 77778877764 689999999999999999998888
Q ss_pred HHHHcCCHHHHHHh--hCCC--CCHHHHHHHHHHHHHhhcCCc---ccHHHHHHcChHHHHHHhhcCC--------CHHH
Q 016280 136 LVMEANGLEPLLSN--FASD--PDVTVRTKALGAISSLIRHNK---PGIEAFRLANGYAALRDALGSE--------SVKF 200 (392)
Q Consensus 136 ~vl~~g~l~~Ll~L--L~s~--~~~~vr~kAl~ALS~lvR~~~---~~~~~f~~~gGl~~L~~lL~s~--------d~kl 200 (392)
.++++ +.+.+++ ++.+ .+..+....+-.|..-+..+. .-.+.++..|-+...+..|... ++..
T Consensus 266 ~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW 343 (802)
T PF13764_consen 266 ALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW 343 (802)
T ss_pred HHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence 78776 6666654 2211 123344333333333333333 2245555666666555544321 1111
Q ss_pred H--------HHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-C-CChHHHHHHHHHHHHHHcCC
Q 016280 201 Q--------RKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-S-EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 201 ~--------~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~-~d~~v~E~aL~aL~~L~~~~ 257 (392)
+ .-++.+|.-|+.++..... ++..++++ +++-|. . .+..+-..|=..|-.|..+.
T Consensus 344 k~~l~~psLp~iL~lL~GLa~gh~~tQ~-~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 344 KEFLSRPSLPYILRLLRGLARGHEPTQL-LIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHhcCCcHHHHHHHHHHHHhcCHHHHH-HHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 1 2356677777776554443 35555664 344333 2 23334334444444444433
No 290
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=56.97 E-value=90 Score=35.36 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC-----Ccc-cHHHHHHcChHHHHHHhh
Q 016280 132 RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH-----NKP-GIEAFRLANGYAALRDAL 193 (392)
Q Consensus 132 ~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~-----~~~-~~~~f~~~gGl~~L~~lL 193 (392)
.+.+.+-+...++.|+.++....++.++.+|-+.|+.++|. .|. ..+++.....+..|+..+
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 45555666789999999998777789999999999999987 332 345555566666555544
No 291
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.59 E-value=1.2e+02 Score=33.99 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=56.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh
Q 016280 186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 264 (392)
Q Consensus 186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~ 264 (392)
++.|-++|.++..-+..+|+.++.+|-........ - .+..|-.++.++..-+|=.|.++|-.++...|..+..|
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~---p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA---P--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc---h--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 45566777788899999999999988754322211 1 56667778889999999999999999999998766555
No 292
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=56.37 E-value=2.2e+02 Score=28.49 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccCCC
Q 016280 270 EKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPGED 327 (392)
Q Consensus 270 ~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~ 327 (392)
.+....|++.++........|+++.|.++ +....+ +-++|-..|+++|
T Consensus 288 ~R~a~~l~eel~~~g~v~~~dve~Aq~~I--~~~~r~--------l~~~G~I~l~~~~ 335 (339)
T PRK05686 288 KRAAEMLREDLEALGPVRLSDVEEAQKKI--VQIARR--------LAEAGEIVLGGGD 335 (339)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHH--HHHHHH--------HHHCCCEEECCCC
Confidence 44566666667666666678888888765 332222 2446777775533
No 293
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.25 E-value=11 Score=38.19 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCCcccHHHHHHcChHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 162 ALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 162 Al~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL--~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
...-|+++|..++.+++.+...||++.+..-- ...++-+++....+++.|+.++..+++.+-++
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 45578899999999999999999999876543 34579999999999999999887777766554
No 294
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.21 E-value=1.4e+02 Score=27.53 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=50.7
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 184 NGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 184 gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.=++.+..-|...+.-.+--|...+..|+...... .++- --++..+-.-|.+.++++...+|.+|..|++..+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~--kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGE--KILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 34666677777777777777778888887652222 2221 1344555566789999999999999999987765
No 295
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=55.81 E-value=1.9e+02 Score=32.05 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
+.++-.-+..|.+++..++.+-.+.+. +|+|+..|.+.. +.-...-++=.+++--+ |. ....-.++.|...+.
T Consensus 287 n~qKs~Flk~Ls~~ip~fp~rv~~~ki--LP~L~~el~n~~--~vp~~LP~v~~i~~~~s--~~-~~~~~~~p~l~pi~~ 359 (700)
T KOG2137|consen 287 NSQKSSFLKGLSKLIPTFPARVLFQKI--LPTLVAELVNTK--MVPIVLPLVLLIAEGLS--QN-EFGPKMLPALKPIYS 359 (700)
T ss_pred cHHHHHHHHHHHHhhccCCHHHHHHhh--hhHHHHHhcccc--ccccccchhhhhhhccc--hh-hhhhhhhHHHHHHhc
Confidence 345555566666667666666665543 677776654321 11111111112222111 01 111223455555444
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
......+..-.+--..+|.+--+ ..++....+++|.+.+.+.+..+|.+++..+..++.. .+ -.+++.-++|.|
T Consensus 360 ~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~--iD-~~~vk~~ilP~l 433 (700)
T KOG2137|consen 360 ASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES--ID-VPFVKQAILPRL 433 (700)
T ss_pred cCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh--cc-HHHHHHHHHHHh
Confidence 22223344444444444443322 2444677888888888888888888888887777643 22 345566677777
Q ss_pred HHh-hcCCChHHHHHHHHHHHHHHcCC
Q 016280 232 LHL-ASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 232 v~L-L~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
..+ +++.+..++..+|-++..+++..
T Consensus 434 ~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 434 KNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred hcchhcccchHHHHHHHHHHHHHHHHH
Confidence 665 44667778888887777776433
No 296
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=55.28 E-value=20 Score=28.56 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=42.7
Q ss_pred CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC----CCHHHHHHHH
Q 016280 141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS----ESVKFQRKAL 205 (392)
Q Consensus 141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s----~d~kl~~kA~ 205 (392)
..+.|+..++.+.++.++|...+.+|..++..+.. . -..|++.+..++.. .+..+-..|-
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~---~--i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGE---N--IKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH---H--HHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 34668888877767899999999999999976542 2 24578888877753 3445544443
No 297
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=85 Score=37.62 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHH-hhcCCcccHHHHHHcChHHHHHHh
Q 016280 115 IRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISS-LIRHNKPGIEAFRLANGYAALRDA 192 (392)
Q Consensus 115 IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~-lvR~~~~~~~~f~~~gGl~~L~~l 192 (392)
=|.-||.=+|.++.+.- +.+. .++ ..+|+|.+. .-|++..|+. |.--|.+ ++.+.....+.+ -..-+.-|+.-
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p-~l~-kLIPrLyRY-~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEP-YLK-KLIPRLYRY-QYDPDKKVQD-AMTSIWNALITDSKKVVDEY-LNEILDELLVN 1047 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhh-HHH-HhhHHHhhh-ccCCcHHHHH-HHHHHHHHhccChHHHHHHH-HHHHHHHHHHh
Confidence 46678888888886532 2222 222 367888775 6778888765 4455555 454434334444 23355556666
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC---CChHHHHH---HHHHHHHHH
Q 016280 193 LGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS---EDPDVREA---ALRGLLELA 254 (392)
Q Consensus 193 L~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~---~d~~v~E~---aL~aL~~L~ 254 (392)
|.+..=|+|+.+|.+|++|+++.+.+. +.+ .+.+....+++. =...+|+. ++++|..++
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~--~~e-~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQ--VKE-KLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999998754432 222 223444444443 23457754 455666553
No 298
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=54.51 E-value=1.1e+02 Score=31.00 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHH
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALR 190 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~ 190 (392)
....+|+.++--|++-+.+ |.++..+..+|....+++.+...++..+-.-++-||--+..........+...+-..++.
T Consensus 34 ~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~ 112 (361)
T PF07814_consen 34 SSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLL 112 (361)
T ss_pred CCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHH
Confidence 4667898888888888874 777788999999999999985444432333332333333333334444444566666667
Q ss_pred Hhhc
Q 016280 191 DALG 194 (392)
Q Consensus 191 ~lL~ 194 (392)
.++.
T Consensus 113 ~Ll~ 116 (361)
T PF07814_consen 113 KLLK 116 (361)
T ss_pred HHhc
Confidence 7766
No 299
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.63 E-value=3.2e+02 Score=30.28 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280 197 SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 197 d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
....|..++.+|++++...+...-.+.+..+++.|+.+|. +.+..+...|+.+|.-|.=+.+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 3567788999999999999999999999999999999887 5567788888888887766555
No 300
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.69 E-value=2.2e+02 Score=29.38 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC
Q 016280 76 EDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD 153 (392)
Q Consensus 76 ~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~ 153 (392)
.-..+.|..++++.+. +..+....-+..|+.++.|+++.-|.....++-.+-...+..+..+.+. .-..|++.+...
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~ 186 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCc
Confidence 4566777778887654 5556666668889999999999999999999999888877777655543 445566666654
Q ss_pred CCHHHHHHHHHHHHHhhcCCcc
Q 016280 154 PDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
....--..++.-++++++|+..
T Consensus 187 ~~~~gI~elLeil~sii~gf~~ 208 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAV 208 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--S
T ss_pred ccccCHHHHHHHHHHHHhccCC
Confidence 4555667888999999998763
No 301
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.24 E-value=2.6e+02 Score=28.09 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCcHH--------------hhhhCCC-CHHHHHHHHHHHHHhhcCCC
Q 016280 26 RNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQ--------------VLESQGV-TPQDIEDMLDELQEHVESID 90 (392)
Q Consensus 26 ~~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~--------------~l~~~~~-~~e~~~~aL~~L~~lve~iD 90 (392)
..+|+|-..||.+..+....+.....+.++.-|++... .....-. ...-+...+..+.-|+.|-.
T Consensus 170 ~~LS~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 170 HVLSKELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred cccCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 47899999999876665432333455666666654210 0000001 24445556666777777665
Q ss_pred ChHHHHHcCChHHHHHhhcC----------CCHHHHHHHHHHHHHHhhC----CHHHHHHHHHcCCHHHHHHhhCCC-CC
Q 016280 91 MANDLHSIGGLAPLLGYLKN----------SHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFASD-PD 155 (392)
Q Consensus 91 nA~d~~~lGgl~~Ll~lL~s----------~~~~IR~~Aa~vLg~iaqN----Np~~Q~~vl~~g~l~~Ll~LL~s~-~~ 155 (392)
.--+..-+-.+++++.||-+ .+-.+|..|+.+++.++.. ++..|..| +..|.+.|... ..
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d~~~~ 324 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI-----TRTLLKALLDPKKP 324 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcCCCCC
Confidence 55555555578888887732 2347999999999999863 22333333 33455544432 23
Q ss_pred HHHHHHHHHHHHHh
Q 016280 156 VTVRTKALGAISSL 169 (392)
Q Consensus 156 ~~vr~kAl~ALS~l 169 (392)
....--|+..|+.+
T Consensus 325 ~~~~YGAi~GL~~l 338 (343)
T cd08050 325 LTTHYGAIVGLSAL 338 (343)
T ss_pred cchhhHHHHHHHHh
Confidence 34466666666655
No 302
>PLN03205 ATR interacting protein; Provisional
Probab=51.46 E-value=1.4e+02 Score=31.14 Aligned_cols=125 Identities=17% Similarity=0.285 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHHhh-CCHHHHHH-HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH------
Q 016280 110 NSHANIRAKAGEVVTTIVQ-NNPRSQQL-VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR------ 181 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaq-NNp~~Q~~-vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~------ 181 (392)
+++..||-.|..+.-.++- .|++.+.. |...-++..+-++|..+.-.-||+.|+.-+=-+. ++|.....|.
T Consensus 383 ~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL-NCpklL~iFcSg~~e~ 461 (652)
T PLN03205 383 RTEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL-NCPKLYDRFDSLHEEK 461 (652)
T ss_pred cchhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH-cCcHHHHHHhcCCccc
Confidence 4566788888888776664 46655443 3344567777788887666678887755443221 2221111111
Q ss_pred --------------HcChH----HHHHHhhcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhc------CchHHHH
Q 016280 182 --------------LANGY----AALRDALGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKL------GFPRLML 232 (392)
Q Consensus 182 --------------~~gGl----~~L~~lL~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~------G~v~~Lv 232 (392)
...|+ ..|..++.. .+.+++++|..+|++++..++...+.++.. +++..++
T Consensus 462 ~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLIL 541 (652)
T PLN03205 462 NSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLIL 541 (652)
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHH
Confidence 11233 334555543 478999999999999999888877666543 4555555
Q ss_pred Hhh
Q 016280 233 HLA 235 (392)
Q Consensus 233 ~LL 235 (392)
++|
T Consensus 542 qvL 544 (652)
T PLN03205 542 HLL 544 (652)
T ss_pred HHH
Confidence 554
No 303
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=50.54 E-value=70 Score=34.37 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccH---------HHHHHcChHHHHHHhhc----CCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280 154 PDVTVRTKALGAISSLIRHNKPGI---------EAFRLANGYAALRDALG----SESVKFQRKALNLIQYLLNENASDCS 220 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~~~---------~~f~~~gGl~~L~~lL~----s~d~kl~~kA~~lLs~L~~~~~~~~~ 220 (392)
.+..++..|+.+++++++...... ...+...-++.|...+. ..+..-+..++.+|.++-. +
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---- 520 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---- 520 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G----
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c----
Confidence 356799999999999987543331 11222333444444443 3455666667777777642 1
Q ss_pred HHHhcCchHHHHHhhcCC---ChHHHHHHHHHHHHHHcCCChh
Q 016280 221 VVDKLGFPRLMLHLASSE---DPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~~---d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
..++.|..++... ...+|-.|+.||..++..++..
T Consensus 521 -----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 521 -----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp -----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred -----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence 2466677766655 5668888888888777776633
No 304
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=49.98 E-value=39 Score=37.27 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.+.-|-.|..+||.+++..|.---.|++...+..|+++|..|.+..+...|+.+|.-++=+-+.....+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 456889999999999999887777889999999999999999999999999999999987766544433
No 305
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.72 E-value=2.3e+02 Score=26.70 Aligned_cols=194 Identities=15% Similarity=0.082 Sum_probs=107.1
Q ss_pred hHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 101 LAPLLG-YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 101 l~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
++.|+. +-+..++++.......|+.++.++-.+...+ +..|..+... .....+.-++..+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence 344554 5566899999999999999998761222222 3344454443 344444455566666665554322
Q ss_pred HHHcChHHHHHHh-----h---cC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh-cCCChHHHHHHHH
Q 016280 180 FRLANGYAALRDA-----L---GS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA-SSEDPDVREAALR 248 (392)
Q Consensus 180 f~~~gGl~~L~~l-----L---~s--~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL-~~~d~~v~E~aL~ 248 (392)
+.+..+... . .+ .........+..+..+|...+. .-..+++.+..+| .+.+..++..++.
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 222222222 1 11 1245555556788899987666 2234678888888 7888889999999
Q ss_pred HHHHHHcCCChhhhhhhhh--------hHHHHHHHHHHHHhhhcC--CChhhHHHHHHHHHHHHHHHHHHhCCCc
Q 016280 249 GLLELAREKADGSAIKLAE--------DNEKLKQLLGERIKGISL--MSPEDLGAAREERHLVDSLWNACYNEPS 313 (392)
Q Consensus 249 aL~~L~~~~~~~~~~~~~~--------~~~~L~~~L~~~~~~i~~--~~~ed~~~~~ee~~~~~~L~~~~f~~~~ 313 (392)
+|..++....-........ ..+.+-+.|-+.+..+.. .+.|+++.++. +++..||+.......
T Consensus 145 ~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~--~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 145 ALAPLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKR--QILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHH--HHHHHHHhhcccccc
Confidence 9999985443110000000 111111112233333333 45666666554 467888876655543
No 306
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.29 E-value=4e+02 Score=29.34 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=82.3
Q ss_pred HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280 182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 261 (392)
Q Consensus 182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~ 261 (392)
..|-+..+.+.+.+++.++|.+++..|+-+...-.+ .+...-.|++..|..-+-+....||-.|+.+|+.+-..
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~----- 162 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM----- 162 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-----
Confidence 466777888888999999999999999988754333 34455567777777766677778888888777643211
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCc-cccccceeeccCCCCCCcccc
Q 016280 262 AIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPS-SLRDKGLLVLPGEDAPPPDVA 334 (392)
Q Consensus 262 ~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~ 334 (392)
. --||...+..|..+..++|| ++|+-+++-|+-|+.--|=|.
T Consensus 163 ----------------------~---------~neen~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~Il 205 (885)
T COG5218 163 ----------------------E---------LNEENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCIL 205 (885)
T ss_pred ----------------------c---------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHH
Confidence 1 12334556677778888876 577778888888888666543
No 307
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=49.20 E-value=1e+02 Score=25.34 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHH
Q 016280 110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 189 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L 189 (392)
.+.+.|...+.|++.+.- ....+++ .+.+.+.. ..+.-+..++|.+-+++++.......+......+.+
T Consensus 16 ~S~~~I~~lt~~a~~~~~-----~a~~iv~-----~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f 84 (114)
T cd03562 16 NSQPSIQTLTKLAIENRK-----HAKEIVE-----IIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLF 84 (114)
T ss_pred ccHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 367788888888888762 2222332 23333333 244788899999999999976665556566668888
Q ss_pred HHhhcCCCHHHHHHHHHHHH
Q 016280 190 RDALGSESVKFQRKALNLIQ 209 (392)
Q Consensus 190 ~~lL~s~d~kl~~kA~~lLs 209 (392)
.......++++|.|...++.
T Consensus 85 ~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 85 LDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 88888888888887766653
No 308
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=49.15 E-value=1.3e+02 Score=29.03 Aligned_cols=67 Identities=28% Similarity=0.342 Sum_probs=42.0
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHHHcCC
Q 016280 188 ALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS--SEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 188 ~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~--~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.|-..|.+++..+|.||..+|+.++..-+.+. ....-+..|+..+. -.|......++.++..|++..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~ 71 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK 71 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc
Confidence 45667888999999999999999987655321 11112344444332 135555555577777777544
No 309
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=48.65 E-value=87 Score=32.30 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhh
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL 150 (392)
.|+-...|+.=..+-.+-|++.+. +..|.+=|++.++.|.-+|..+++.|+.|+. .++..|...+....|..++
T Consensus 23 ~enW~~IlDvCD~v~~~~~~~kd~-----lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDPDGGKDC-----LKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALI 97 (462)
T ss_pred cccHHHHHHHHHhhcCCCcccHHH-----HHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHH
Confidence 344444443322223344666654 6677888999999999999999999999976 4445566667777777777
Q ss_pred CCCCCHHHHHHH
Q 016280 151 ASDPDVTVRTKA 162 (392)
Q Consensus 151 ~s~~~~~vr~kA 162 (392)
.+...+.|+.|.
T Consensus 98 ~~~~h~kV~~k~ 109 (462)
T KOG2199|consen 98 ESKAHPKVCEKM 109 (462)
T ss_pred hhcccHHHHHHH
Confidence 654566666654
No 310
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.32 E-value=33 Score=40.51 Aligned_cols=147 Identities=22% Similarity=0.226 Sum_probs=90.3
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 98 IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 98 lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
+|.+|.|-.-|.+.+..+|..|..++|.+.+... +|-. +. ......+.-+ .|.+..||.+++-.++.+.-+++.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~--~~~~~~~~~fl~r~-~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLS--ETYDDLWSAFLGRF-NDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhc--ccchHHHHHHHHHh-ccCChhhhhhHHHHhHHHHhcCch
Confidence 4666777777888999999999999999998644 3332 21 2333444443 346789999999999998877765
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
..+.. +-...+.......+.+++..++....... ...-.++.. ++..+.+.+++....||..|+..|..+-.
T Consensus 334 ~~~~~---~~~~~l~~~~~D~~~rir~~v~i~~~~v~----~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 334 IAKAS---TILLALRERDLDEDVRVRTQVVIVACDVM----KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhhHH---HHHHHHHhhcCChhhhheeeEEEEEeehh----HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44332 11222222222233343333322221111 111122222 66667777888999999999999998877
Q ss_pred C
Q 016280 256 E 256 (392)
Q Consensus 256 ~ 256 (392)
+
T Consensus 406 ~ 406 (1266)
T KOG1525|consen 406 N 406 (1266)
T ss_pred H
Confidence 5
No 311
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.48 E-value=1.6e+02 Score=29.52 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=71.6
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
+...+..|.++ +=..+.-++..|.++.+-++.....- -.--+-.+++-+++....|-+-||..++.|.+.-......
T Consensus 90 l~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~-L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPM-LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455555653 55778888888998888776443322 2234555666677777889999999999998754443332
Q ss_pred HhcCchHHHHH-hhcCCC---hHHHHHHHHHHHHHHcCCCh
Q 016280 223 DKLGFPRLMLH-LASSED---PDVREAALRGLLELAREKAD 259 (392)
Q Consensus 223 ~~~G~v~~Lv~-LL~~~d---~~v~E~aL~aL~~L~~~~~~ 259 (392)
.+..++. |+...+ -=++|.|..+|..++.+-.+
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp 203 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP 203 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh
Confidence 3334433 343322 33889999999999887764
No 312
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=46.49 E-value=3.2e+02 Score=27.40 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHhhC
Q 016280 24 STRNLSEEDRRWFMEAMQSQ 43 (392)
Q Consensus 24 ~~~~~s~E~~~~L~~Al~~~ 43 (392)
-.+.|++++.+-+-.+|...
T Consensus 28 vl~~L~~~ei~~l~~~m~~l 47 (334)
T PRK07194 28 VMQQLSREEVQRLSQKMARL 47 (334)
T ss_pred HHhcCCHHHHHHHHHHHHhC
Confidence 35788888888888888775
No 313
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=45.75 E-value=2.9e+02 Score=26.70 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHH-------HHHHHHHHHHHhhcCCcccHHHHHHcC
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVT-------VRTKALGAISSLIRHNKPGIEAFRLAN 184 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~-------vr~kAl~ALS~lvR~~~~~~~~f~~~g 184 (392)
+...-..|..+|+. +.+.-++++|++++..+.+.- +-.-.-..+.++ -.|
T Consensus 55 ~~~~~~~a~~LLaq-----------~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G 111 (249)
T PF06685_consen 55 EYNLHFYALYLLAQ-----------FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDG 111 (249)
T ss_pred chHHHHHHHHHHHH-----------HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCC
Confidence 33344556666653 334568999999987654311 111111222222 244
Q ss_pred hHHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCCcchHHHHh
Q 016280 185 GYAALRDALGSES--VKFQRKALNLIQYLLNENASDCSVVDK 224 (392)
Q Consensus 185 Gl~~L~~lL~s~d--~kl~~kA~~lLs~L~~~~~~~~~~l~~ 224 (392)
-++.|.+++.+++ .-+|..|+.+|..++..++..++.+++
T Consensus 112 ~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 112 DIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5666677776654 667888999999999999998887665
No 314
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.51 E-value=1.1e+02 Score=35.06 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHHh---hcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 184 NGYAALRDALGSESVKFQRKALNLIQYLL---NENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 184 gGl~~L~~lL~s~d~kl~~kA~~lLs~L~---~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
..+.--.++|.+++..+|.+|+-.+++-+ ...+..---++. -.-+.+++.+..+++-+...|..+|.++...+..|
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 34444567788899999999998887643 222221111222 34577888889999999999999999999999887
Q ss_pred hhhhh-hhhHHHHHHHHHHHH
Q 016280 261 SAIKL-AEDNEKLKQLLGERI 280 (392)
Q Consensus 261 ~~~~~-~~~~~~L~~~L~~~~ 280 (392)
+...+ ++-.+.|+..+....
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 66433 666777776655443
No 315
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=45.41 E-value=2.3e+02 Score=30.27 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
.+..+|..|+||+..++..++.. .-+.|..++.. .+..+|..|..+|- ..+|.. ..+..+
T Consensus 492 ~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm---~t~P~~-------~~l~~i 553 (574)
T smart00638 492 LSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLM---ETKPSV-------ALLQRI 553 (574)
T ss_pred CCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHH---hcCCCH-------HHHHHH
Confidence 46789999999999888665542 23345666554 46788887765542 333442 235556
Q ss_pred HHhhcC-CChHHHHHHHH
Q 016280 232 LHLASS-EDPDVREAALR 248 (392)
Q Consensus 232 v~LL~~-~d~~v~E~aL~ 248 (392)
+..+.. ++..|.-.+.+
T Consensus 554 a~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 554 AELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHhhcCcHHHHHHhHH
Confidence 665553 34455444443
No 316
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=45.36 E-value=1.2e+02 Score=29.78 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=68.4
Q ss_pred HcCChHHHH---HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcC
Q 016280 97 SIGGLAPLL---GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 97 ~lGgl~~Ll---~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~ 172 (392)
++||=..+. .-|..+.+-.|-.++.|+|.+-. | -+++.|.+.|. ....+-||..|+.||+.+...
T Consensus 182 n~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 182 NIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred ccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 466655444 44455677789999999987642 1 25677776554 335678999999999998742
Q ss_pred CcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280 173 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 215 (392)
Q Consensus 173 ~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~ 215 (392)
..+.+|...+..+..-+++-+..+|..+-..+
T Consensus 251 -----------~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 251 -----------DCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred -----------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 24677888888888888888888887665443
No 317
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=44.50 E-value=1.3e+02 Score=31.94 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=67.8
Q ss_pred HhhcCC--CHHHHHHHHHHH---HHHhhCCHHHHHH----HHHcCCHHHHHHhh----CCCCCHHHHHHHHHHHHHhhcC
Q 016280 106 GYLKNS--HANIRAKAGEVV---TTIVQNNPRSQQL----VMEANGLEPLLSNF----ASDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 106 ~lL~s~--~~~IR~~Aa~vL---g~iaqNNp~~Q~~----vl~~g~l~~Ll~LL----~s~~~~~vr~kAl~ALS~lvR~ 172 (392)
..|.++ +..+|..+...+ .....+.+..+-. ++..++.+.+ +.- ....+...|..+-.+|+.+++.
T Consensus 326 ~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L~~~ 404 (501)
T PF13001_consen 326 DGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLLAKR 404 (501)
T ss_pred ccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHHHcc
Confidence 344454 667888887777 5555553322222 2233455433 210 1124678999999999999998
Q ss_pred CcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 016280 173 NKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN 215 (392)
Q Consensus 173 ~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~ 215 (392)
.+.... -+.+-+..|...|..++..++...-.+|+.|+...
T Consensus 405 ~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 405 APSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred Cccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 875431 13445566677777788899998888888888653
No 318
>PRK14707 hypothetical protein; Provisional
Probab=43.56 E-value=3.1e+02 Score=34.63 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=87.0
Q ss_pred cCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc
Q 016280 98 IGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG 176 (392)
Q Consensus 98 lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~ 176 (392)
.-|+..++.-| +-++......|+..|+.-.-+.+..++. +...++..++.-|.+=++..+=..+..+|..-+-+....
T Consensus 372 ~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l 450 (2710)
T PRK14707 372 PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTEL 450 (2710)
T ss_pred hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHH
Confidence 34566777655 4588888888888888777788888775 455567778887787677777788888898888787776
Q ss_pred HHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCC
Q 016280 177 IEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSED 239 (392)
Q Consensus 177 ~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d 239 (392)
++.| +..++.-....++. +|..+-..|+..|..=+.+++..++.+.-.++...|-.|=+-++
T Consensus 451 ~~~~-~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 451 CKAL-DPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPD 513 (2710)
T ss_pred Hhhc-ChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC
Confidence 6666 44445555566654 55555544444443333333444443333333333333333334
No 319
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.24 E-value=57 Score=27.44 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA 140 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~ 140 (392)
|++.|+..|..++++|...|..+|-.++... .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 4888999999999999999999999999876 555655553
No 320
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.19 E-value=76 Score=33.53 Aligned_cols=70 Identities=24% Similarity=0.224 Sum_probs=55.5
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-HHHHhcCchHHHHHhhcC--CChHHHHHHHHHHHHH
Q 016280 184 NGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-SVVDKLGFPRLMLHLASS--EDPDVREAALRGLLEL 253 (392)
Q Consensus 184 gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-~~l~~~G~v~~Lv~LL~~--~d~~v~E~aL~aL~~L 253 (392)
.++..|.+-+++.+.+++.-|+.+|--++.+..... ..|.+.+++.-+|.+.+. .+..||+++|.+|..=
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 467778888888888999999998888876654443 367788999999998874 4788999999888654
No 321
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=43.12 E-value=1.5e+02 Score=29.97 Aligned_cols=93 Identities=23% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
+..++.=+....+..+|+.++-.|..-|.+ +.-...|...|...-+.+.+.. .+..+-.-++.++.+++..+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455666556555678999999999998875 5567788889999999999854 34435555656677777666665666
Q ss_pred HHhcCchHHHHHhhc
Q 016280 222 VDKLGFPRLMLHLAS 236 (392)
Q Consensus 222 l~~~G~v~~Lv~LL~ 236 (392)
+.+.+..+.++.|+.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 666677777677776
No 322
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=42.06 E-value=1.2e+02 Score=28.03 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHc--CC--HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVMEA--NG--LEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~--l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
.--...+.+++|++|- |..++.+++. +. +..|+-.+.+. +..-|.-++.+|-|+|-+..
T Consensus 73 ~~~~yla~vl~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~ 135 (192)
T PF04063_consen 73 DNYDYLASVLANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD 135 (192)
T ss_pred cchhHHHHHHHHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh
Confidence 3445678899999985 7899988865 34 77788776664 66667777888888886543
No 323
>PLN03205 ATR interacting protein; Provisional
Probab=42.03 E-value=2.2e+02 Score=29.78 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=95.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHHcCCHHHHHHhh----CCCCCHHHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQ---NNPRSQQLVMEANGLEPLLSNF----ASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaq---NNp~~Q~~vl~~g~l~~Ll~LL----~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
+++|+.|..-.+..+-.++..+|-.+-| ||.+--++-.+.+.+. |+.++ ...+...||..|+.-.--+++..
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 5677777777788888888877766655 2332222222334432 33322 22345568888877666555543
Q ss_pred c--ccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHH---------------------hcC---
Q 016280 174 K--PGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVD---------------------KLG--- 226 (392)
Q Consensus 174 ~--~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~---------------------~~G--- 226 (392)
. ...+.|.....+..+.++|+.. ...||..|..+|.-|+. .+.....|+ ..|
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHHHH
Confidence 2 2357777777888889999875 48899999888766543 222211111 111
Q ss_pred chHHHHHhhc-----CCChHHHHHHHHHHHHHHcCCCh
Q 016280 227 FPRLMLHLAS-----SEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 227 ~v~~Lv~LL~-----~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
+++-|.+++. ..|..++..+.-.|.-++.....
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~ 520 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNS 520 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCC
Confidence 3455666665 35788899999888888876653
No 324
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=40.97 E-value=71 Score=26.78 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHH
Q 016280 26 RNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLL 105 (392)
Q Consensus 26 ~~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll 105 (392)
..++.+||.-+.++|.+...+..+.+.++ +..... ....+-...+|+.+..++.-++ ...+....-++.+.
T Consensus 62 ~~~~~~r~~~l~~~l~~~~~~i~~~l~~~---l~~~~~-----~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~ 132 (148)
T PF08389_consen 62 SSLSQERRRELKDALRSNSPDILEILSQI---LSQSSS-----EANEELVKAALKCLKSWISWIP-IELIINSNLLNLIF 132 (148)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCH-----CCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcc-----ccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHH
Confidence 34567778888877776533333333332 221110 0124567789999999999554 34555566788888
Q ss_pred HhhcCCCHHHHHHHHHHH
Q 016280 106 GYLKNSHANIRAKAGEVV 123 (392)
Q Consensus 106 ~lL~s~~~~IR~~Aa~vL 123 (392)
.+|.+++ ++..|+.||
T Consensus 133 ~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 133 QLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHTTSCC--CHHHHHHHH
T ss_pred HHcCCHH--HHHHHHHhC
Confidence 9986555 588888875
No 325
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=40.88 E-value=1.1e+02 Score=30.37 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=47.8
Q ss_pred HHHHHHhh--cCCcccHHHHHHcC--hHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHH------hcCchH
Q 016280 163 LGAISSLI--RHNKPGIEAFRLAN--GYAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVD------KLGFPR 229 (392)
Q Consensus 163 l~ALS~lv--R~~~~~~~~f~~~g--Gl~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~~~l~------~~G~v~ 229 (392)
+.||++++ ...+.....|+..+ -+.-|+.+++.+ ...+|.-|..+|..|+....-..+.+. .+|++.
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~ 319 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILP 319 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHH
Confidence 56777773 33444566676666 788899999865 379999999999999985444433332 335555
Q ss_pred HHHH
Q 016280 230 LMLH 233 (392)
Q Consensus 230 ~Lv~ 233 (392)
.++.
T Consensus 320 ~llR 323 (329)
T PF06012_consen 320 QLLR 323 (329)
T ss_pred HHHH
Confidence 5543
No 326
>PRK14707 hypothetical protein; Provisional
Probab=39.42 E-value=3.5e+02 Score=34.14 Aligned_cols=170 Identities=15% Similarity=0.220 Sum_probs=98.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD 155 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~ 155 (392)
.+....+.|.++.+....+-.. ++..++.-| +-++..+...|+..|+.-.-..+...+ -++.-++...+.-|.+=++
T Consensus 310 Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~ 387 (2710)
T PRK14707 310 AAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPD 387 (2710)
T ss_pred HHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCC
Confidence 3333444444444333222222 234444444 346666666666666554444454444 3556678888888776666
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280 156 VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L 234 (392)
..+=+.|..+|..=+-+.+...+.| +.-|+.-++..|.. ++..+...++..|.--+.++.+.++.+.-.++...|-.+
T Consensus 388 ~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~Lnal 466 (2710)
T PRK14707 388 TPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDAL 466 (2710)
T ss_pred chHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHh
Confidence 5555666677776555666666665 66677777777765 788888888888877776666666555544544444444
Q ss_pred hcCCChHHHHHHHHH
Q 016280 235 ASSEDPDVREAALRG 249 (392)
Q Consensus 235 L~~~d~~v~E~aL~a 249 (392)
-+=+|..+.-.++..
T Consensus 467 SKWPd~p~c~~aa~~ 481 (2710)
T PRK14707 467 SKWPDTPICGQTASA 481 (2710)
T ss_pred hcCCCChhHHHHHHH
Confidence 343444444333333
No 327
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=38.22 E-value=5e+02 Score=27.30 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC-------CHHHHHHHHHHHHHhhcCCcccHHHHHHc
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP-------DVTVRTKALGAISSLIRHNKPGIEAFRLA 183 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~-------~~~vr~kAl~ALS~lvR~~~~~~~~f~~~ 183 (392)
++..+-..|..||.|++-+.+.+|..+++......+++.+.... ..-.-.+.++-++.+=.. .-.+.++..
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~--~Rsql~~~l 186 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETD--HRSQLIAEL 186 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHH--HHHHHHHHh
Confidence 34577888999999999999999999999988888887764321 112334566766665331 224556688
Q ss_pred ChHHHHHHhhcC
Q 016280 184 NGYAALRDALGS 195 (392)
Q Consensus 184 gGl~~L~~lL~s 195 (392)
+|++.+...|.+
T Consensus 187 ~Gl~~lt~~led 198 (532)
T KOG4464|consen 187 LGLELLTNWLED 198 (532)
T ss_pred cccHHHHHHhhc
Confidence 999999999875
No 328
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=37.97 E-value=4.9e+02 Score=27.16 Aligned_cols=173 Identities=14% Similarity=0.100 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHH-HHHh
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEP-LLSN 149 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~-Ll~L 149 (392)
..++..+++.|.+.++..-. ..+.. .|...-.++.. ...++|..+...+-.|++..... .++.+. +.+.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-~~i~~--iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~------~~~~R~~fF~~ 74 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-SSIEE--IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS------SGLMRAEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-hHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc------cHHHHHHHHHH
Confidence 45666777777777765533 22211 23333355654 46789999999999998764321 112211 2222
Q ss_pred hC---CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC---------------------------CCHH
Q 016280 150 FA---SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---------------------------ESVK 199 (392)
Q Consensus 150 L~---s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s---------------------------~d~k 199 (392)
+. .+.+...+.+|+.+|+ ++.... .+...+..+.|...|.. .+.+
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALT---DNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEES 149 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHH---cCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhh
Confidence 22 2223456666666655 444333 23466666666665531 0222
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh-hcCCChHHHHHHHHHHHHHHcCCC
Q 016280 200 FQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL-ASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 200 l~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L-L~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.-.....++.+++.-+....+.-.=.+++..++.+ .++...+..+.++..+..+++-+.
T Consensus 150 ~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~ 209 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD 209 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc
Confidence 33344445555554333222222222556666655 345566666888888888877443
No 329
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=37.53 E-value=2.9e+02 Score=34.30 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=70.4
Q ss_pred CChHHHHHhh----cCCCHHHHHHHHHHHHHHhhC--------CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHH
Q 016280 99 GGLAPLLGYL----KNSHANIRAKAGEVVTTIVQN--------NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAI 166 (392)
Q Consensus 99 Ggl~~Ll~lL----~s~~~~IR~~Aa~vLg~iaqN--------Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~AL 166 (392)
..|..+-.++ .+.+..|+..|...|..++.- |-..|+. .+.++..++.+..+.++|...+.++
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQke-----fLkPfe~im~~s~~~eVrE~ILeCv 1207 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNE-----FMKPFVIVMRKSNAVEIRELIIRCV 1207 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHH-----HHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4444454432 245677888888888887762 2234444 4567777666667889999999999
Q ss_pred HHhhcCCcccHHHHHHcChHHHHHHhhcC----CCHHHHHHHHHHHHHHhh
Q 016280 167 SSLIRHNKPGIEAFRLANGYAALRDALGS----ESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 167 S~lvR~~~~~~~~f~~~gGl~~L~~lL~s----~d~kl~~kA~~lLs~L~~ 213 (392)
..|+..... .+ ..||..+..++.. .+..+-..|-..+..++.
T Consensus 1208 ~qmI~s~~~---nI--kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1208 SQMVLSRVN---NV--KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHHHHHHh---hh--hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999875432 22 3399998888873 456676767666766664
No 330
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=37.14 E-value=4.3e+02 Score=26.21 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC---CCHHHH-HHHHHHHHHhhcC----CcccHHHHHHcCh
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD---PDVTVR-TKALGAISSLIRH----NKPGIEAFRLANG 185 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~---~~~~vr-~kAl~ALS~lvR~----~~~~~~~f~~~gG 185 (392)
.||..-..++.+.+++.+.... +....+++|+..+-.| ..+..| ...+..++.+++. ..+....+ -...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I-~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQI-LEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHH-HHHH
Confidence 4778888899999988775544 4446888988743321 111222 2344555555543 22333333 3556
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhc------CchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 186 YAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKL------GFPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 186 l~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~~~l~~~------G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
+...+.++..+ -+.++..--.+|+++...... .+... -++..++--++|.+.++.+.++.+|..+.+.
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~---~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFP---ALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTH---HHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHH---HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 67777777653 389998888899999875432 33322 3456677778899999999999999988664
Q ss_pred C
Q 016280 257 K 257 (392)
Q Consensus 257 ~ 257 (392)
.
T Consensus 196 ~ 196 (319)
T PF08767_consen 196 V 196 (319)
T ss_dssp H
T ss_pred H
Confidence 4
No 331
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=36.71 E-value=3.6e+02 Score=27.74 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCC--H--HHHHHHHHcCCHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNN--P--RSQQLVMEANGLE 144 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNN--p--~~Q~~vl~~g~l~ 144 (392)
.++.|++.+...|..+....-+-+.++.-..-..+++++.. ....--....+++|.+.... | .-...++..
T Consensus 145 ~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~---- 220 (409)
T PF01603_consen 145 PDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRK---- 220 (409)
T ss_dssp STHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHH----
Confidence 36677777777777777766666666666656666676653 33333445677777777631 1 112223322
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK 224 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~ 224 (392)
.|+-|.....-......-.+++...+..++.....+ +..|++..-..+..=+.--+..+..++..-+...-.-+.
T Consensus 221 vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~ 295 (409)
T PF01603_consen 221 VLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM 295 (409)
T ss_dssp TTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 233333332223455666777777776665444333 333444444444443344444466666432222111122
Q ss_pred cCchHHHHHhhcCCChHHHHHHHH
Q 016280 225 LGFPRLMLHLASSEDPDVREAALR 248 (392)
Q Consensus 225 ~G~v~~Lv~LL~~~d~~v~E~aL~ 248 (392)
.-+...+..++.+++..|-|.|+.
T Consensus 296 ~~lf~~la~ci~S~h~qVAErAl~ 319 (409)
T PF01603_consen 296 VPLFKRLAKCISSPHFQVAERALY 319 (409)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHG
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 245677788888999999999984
No 332
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=36.38 E-value=3.9e+02 Score=27.88 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH---HHHcChHHH
Q 016280 112 HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA---FRLANGYAA 188 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~---f~~~gGl~~ 188 (392)
+.-+=..-..++..+-..-...-..++.. ....+....++..++..--...-+|+.++|........ -.+..-+++
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 33344444555554443322222233332 23333344456667888888899999999875433322 225667889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCC-cc-----h---------HHHHhcCchHHHHHhhcC---CCh------HHHH
Q 016280 189 LRDALGSESVKFQRKALNLIQYLLNENA-SD-----C---------SVVDKLGFPRLMLHLASS---EDP------DVRE 244 (392)
Q Consensus 189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~-~~-----~---------~~l~~~G~v~~Lv~LL~~---~d~------~v~E 244 (392)
+..+|+.+-...---+..+++.|+...+ .. . ......|-+|.++.||+. .++ +-.+
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence 9999998877777888888888886655 11 1 122344889999988862 111 2235
Q ss_pred HHHHHHHHHHcCC
Q 016280 245 AALRGLLELAREK 257 (392)
Q Consensus 245 ~aL~aL~~L~~~~ 257 (392)
..+.....|..+.
T Consensus 202 ~iLgvFQkLi~sk 214 (435)
T PF03378_consen 202 PILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHT-T
T ss_pred HHHHHHHHHHCCC
Confidence 6666666665554
No 333
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=35.94 E-value=3.5e+02 Score=24.90 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=49.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
++.++.-|...+...|..|..-+..+.+. ...+.++-. ..+.+|-.-|.+ .+++|...++.+|..+++.++..-.
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNT-RDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 56666666666666777777777777665 122223322 345555565565 5889999999999999887654333
Q ss_pred H
Q 016280 179 A 179 (392)
Q Consensus 179 ~ 179 (392)
+
T Consensus 117 a 117 (183)
T PF10274_consen 117 A 117 (183)
T ss_pred H
Confidence 3
No 334
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.93 E-value=2.3e+02 Score=27.31 Aligned_cols=148 Identities=20% Similarity=0.113 Sum_probs=85.4
Q ss_pred hHHHHHcCChH-HHHHhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-CCHHHHHHHHHHHH
Q 016280 92 ANDLHSIGGLA-PLLGYLKN--SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-PDVTVRTKALGAIS 167 (392)
Q Consensus 92 A~d~~~lGgl~-~Ll~lL~s--~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-~~~~vr~kAl~ALS 167 (392)
++.+.+.+.++ -|+.+|.+ .+..|-..++.++.++..--.. + .... .+...+.....-.-
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~-------------~---~~~~~~~~~~~~~~~~l~~ 96 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL-------------L---VESQPKDKNQRRNIPELLK 96 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH-------------h---ccCCCCChHHHHHHHHHHH
Confidence 55666666665 46776654 3677888888888877742111 0 1111 11122222211111
Q ss_pred HhhcCCcccHHHHHHcChHHHHHHhhc-----------CCCHHHHHHHHHHHHHHhhcCCcc----------------hH
Q 016280 168 SLIRHNKPGIEAFRLANGYAALRDALG-----------SESVKFQRKALNLIQYLLNENASD----------------CS 220 (392)
Q Consensus 168 ~lvR~~~~~~~~f~~~gGl~~L~~lL~-----------s~d~kl~~kA~~lLs~L~~~~~~~----------------~~ 220 (392)
.+ ...+.+|...+.+.++++.+. ..+..+-...+.+++|++.-.+.. ..
T Consensus 97 ~l----~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~ 172 (266)
T PF04821_consen 97 YL----QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIW 172 (266)
T ss_pred HH----HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHH
Confidence 11 122345555555555554442 124677888999999998541110 23
Q ss_pred HHHhcCchHHHHHhhcCC-ChHHHHHHHHHHHHHHcCCCh
Q 016280 221 VVDKLGFPRLMLHLASSE-DPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~~-d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.+.+.|+...|+.+..+. ..++....+.++..|.++...
T Consensus 173 ~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 173 ALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 566779999999988875 455667888888888887763
No 335
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=34.74 E-value=33 Score=28.89 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHH
Q 016280 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVRE 244 (392)
Q Consensus 206 ~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E 244 (392)
..++.|+ ..|+....+++.|.++.|+.||.|++.++.-
T Consensus 68 k~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 68 KKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3444555 4678888999999999999999999887643
No 336
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=34.51 E-value=5e+02 Score=26.25 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=10.6
Q ss_pred HcChHHHHHHhhcCCC
Q 016280 182 LANGYAALRDALGSES 197 (392)
Q Consensus 182 ~~gGl~~L~~lL~s~d 197 (392)
..||+.....+|+.-+
T Consensus 200 ~~gg~~~~aeIlN~~d 215 (339)
T COG1536 200 KLGGIKAAAEILNLLD 215 (339)
T ss_pred ccccHhHHHHHHHhcc
Confidence 5677777777766544
No 337
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.29 E-value=2.4e+02 Score=29.78 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280 131 PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 131 p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
..+.+.+.+.+.++.|+.+|....+..++..|...|..++|-.
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556667788999999999987778889999999998887754
No 338
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.49 E-value=1.1e+02 Score=35.72 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=64.1
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc---CCChHHHHHHHHHHHH
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---SEDPDVREAALRGLLE 252 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~---~~d~~v~E~aL~aL~~ 252 (392)
..+.++.+|.+.+|++.+-...+|++..-+.++..+++.++.+.+.+...|.++.|++++. ++...+.-+++.++.-
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 3566778999999999988888999999999999999999999999999999999888765 4556666666655443
Q ss_pred H
Q 016280 253 L 253 (392)
Q Consensus 253 L 253 (392)
|
T Consensus 980 L 980 (2799)
T KOG1788|consen 980 L 980 (2799)
T ss_pred H
Confidence 3
No 339
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.13 E-value=6.6e+02 Score=27.21 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=66.3
Q ss_pred HHHHHHhhCCC-------CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC----------HHHHHHHH
Q 016280 143 LEPLLSNFASD-------PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES----------VKFQRKAL 205 (392)
Q Consensus 143 l~~Ll~LL~s~-------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d----------~kl~~kA~ 205 (392)
+|.++..+... .+......++..+.+|.+| +...-.-+.+--++.++.|+-+++ --+|-=|+
T Consensus 241 lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA 319 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAA 319 (576)
T ss_pred HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHH
Confidence 56666665432 2455666777777888765 433333334556777777765532 24888899
Q ss_pred HHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCC
Q 016280 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREK 257 (392)
Q Consensus 206 ~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~ 257 (392)
.++.++|.+....... .+--++..+...+.+. ....+--|+..|..|....
T Consensus 320 ~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~ 372 (576)
T KOG2549|consen 320 RLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEV 372 (576)
T ss_pred HHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhh
Confidence 9999999765554333 3334455555555433 4455555666665555433
No 340
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=32.10 E-value=4.7e+02 Score=27.45 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--------ESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--------~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
++..|...++-+|.|++-+.+.++..|+...-...+.+.+.+ +..-.-.+-+|++..|-. ....+.+.+.
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--~~Rsql~~~l 186 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--DHRSQLIAEL 186 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--HHHHHHHHHh
Confidence 355789999999999999999999999887766555544332 123445566777777644 2334566677
Q ss_pred CchHHHHHhhcCC---------------ChHHHHHHHHHHHHHHcCCChh
Q 016280 226 GFPRLMLHLASSE---------------DPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 226 G~v~~Lv~LL~~~---------------d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
++++.+-..|.+. +.+.--.+|.++.++..+....
T Consensus 187 ~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~ 236 (532)
T KOG4464|consen 187 LGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKD 236 (532)
T ss_pred cccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccc
Confidence 8888877776521 2234456677788887777643
No 341
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.58 E-value=6.8e+02 Score=26.87 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=49.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-CCC----------CHHHHHHHHHHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SDP----------DVTVRTKALGAISS 168 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~~----------~~~vr~kAl~ALS~ 168 (392)
...|+.++.+.+..+|..+..++-.+---.+.++..|++. +.-+|.|.- .++ ..++|.+|+.+|-.
T Consensus 46 ~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~lii~n--~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~ 122 (661)
T KOG2374|consen 46 SQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLIIEN--LDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEK 122 (661)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHHHhC--HHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999998887778888777764 666776632 221 24678888777654
No 342
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=30.81 E-value=4.7e+02 Score=26.62 Aligned_cols=91 Identities=21% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCh-------------HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMA-------------NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL 136 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA-------------~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~ 136 (392)
.....+..|+.-+.-+......+ .+|...-.+|-|. -=.+.++-+|..|++.+.+....-|+ +.
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~ 343 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQ 343 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HH
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HH
Confidence 45677888888888777766432 2222222223222 11146788999999999998876553 22
Q ss_pred HHHcCCHHHHHHhhCCCCCHHHHHHHHHHH
Q 016280 137 VMEANGLEPLLSNFASDPDVTVRTKALGAI 166 (392)
Q Consensus 137 vl~~g~l~~Ll~LL~s~~~~~vr~kAl~AL 166 (392)
+. +.+|.|+..|.+ ++..|+.-|+.||
T Consensus 344 l~--~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 LL--QIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp HH--HHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 33 378999999887 4778999888876
No 343
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=29.69 E-value=2.2e+02 Score=27.44 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=42.5
Q ss_pred hHHHHHc--CChHHHHHhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 92 ANDLHSI--GGLAPLLGYLKNSH--ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 92 A~d~~~l--Ggl~~Ll~lL~s~~--~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
++-|... |-+++|-.++.+++ .=+|..|+.+++.++...|..++.+++. ++.++.-
T Consensus 102 ~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~--f~~ll~~ 161 (249)
T PF06685_consen 102 PRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY--FRELLNY 161 (249)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHH
Confidence 4444444 56788888888765 4489999999999999999888888875 6666655
No 344
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=29.35 E-value=1.6e+02 Score=36.25 Aligned_cols=56 Identities=11% Similarity=0.277 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHcC---CHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280 115 IRAKAGEVVTTIVQNNPRSQQLVMEAN---GLEPLLSNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 115 IR~~Aa~vLg~iaqNNp~~Q~~vl~~g---~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
.-..-..+|+.++++++..+..+.+.. .++.|+.++.......+|...+.+|++++
T Consensus 580 ~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 580 MLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 445677899999999999999998763 68999999998888899999999999995
No 345
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=29.14 E-value=7.5e+02 Score=26.62 Aligned_cols=138 Identities=15% Similarity=0.244 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhh
Q 016280 30 EEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYL 108 (392)
Q Consensus 30 ~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL 108 (392)
+.-+.+.++|+++......+...+....+..+.. .....+..++...|..|...|..+|+- +.| +..++.+.
T Consensus 10 ~~~~~~V~~AL~~~~~Gd~~~Y~~L~~~l~~~~~--~~d~~~~~~l~~~L~~L~~~Vs~Ld~~~~~L-----V~ail~~~ 82 (563)
T PF05327_consen 10 EMYKSFVRSALESHEKGDSSQYDELVEQLSDPSE--SKDAISVSQLIRWLKALSSCVSLLDSSCKQL-----VEAILSLN 82 (563)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHS-TT---TTS--HHHHHHHHHHHHHGGGGG-SCCHHH-----HHHHHT-T
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccccc--CcccccHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHcCC
Confidence 3446788899888522223455555555522211 112246678999999999999999874 222 44555431
Q ss_pred -cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCC-------------HHHHHHHHHHHHHhhcCCc
Q 016280 109 -KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPD-------------VTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 109 -~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~-------------~~vr~kAl~ALS~lvR~~~ 174 (392)
..-++.++..-...|++++..++..-..+ +..|++.+..... ..+...+-.+|..+++-.|
T Consensus 83 W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~v-----l~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP 157 (563)
T PF05327_consen 83 WLGRDEDFVEAYIQFLINLVSAQPKYLSPV-----LSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVP 157 (563)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-G
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcC
Confidence 13456777777777888877666554444 4456665543211 1233456666777766666
Q ss_pred ccHHH
Q 016280 175 PGIEA 179 (392)
Q Consensus 175 ~~~~~ 179 (392)
.+...
T Consensus 158 ~s~~~ 162 (563)
T PF05327_consen 158 TSPSF 162 (563)
T ss_dssp GGHHH
T ss_pred CCHHH
Confidence 54443
No 346
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=28.84 E-value=1.9e+02 Score=25.31 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+..++..|.++ ..+-|.+|+-.|-.+.++.+
T Consensus 6 i~~~~~~L~S~-k~keR~~al~~L~~il~~~~ 36 (155)
T PF11640_consen 6 INSILRLLSSD-KIKERNKALEDLRHILSSPP 36 (155)
T ss_pred HHHHHHHHhcc-ccchHHHHHHHHHHHHcCcc
Confidence 44577777775 45789999999999987654
No 347
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.56 E-value=4e+02 Score=23.32 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhcCCccc---------HHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC-
Q 016280 157 TVRTKALGAISSLIRHNKPG---------IEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLG- 226 (392)
Q Consensus 157 ~vr~kAl~ALS~lvR~~~~~---------~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G- 226 (392)
..+.-++..|-++..++... ....+...-.+.|.+.+.+++..+-..++..+..|....... .-.+.+
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~--Lk~ele~ 114 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSH--LKLELEV 114 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 45666666666666554332 223345667778888887777899999999999998543221 112223
Q ss_pred chHHHHH-hhcCCC--hHHHHHHHHHHHHHHcCC
Q 016280 227 FPRLMLH-LASSED--PDVREAALRGLLELAREK 257 (392)
Q Consensus 227 ~v~~Lv~-LL~~~d--~~v~E~aL~aL~~L~~~~ 257 (392)
++..++. ++.++. ..-|+.++.++..++++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 2344444 566444 467788999999988754
No 348
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=28.27 E-value=5.2e+02 Score=24.45 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-------CcccHHHHHHcChHH-HHHHhhcCCCHHHHHHHHHHHHHHhhcC---Cc---
Q 016280 152 SDPDVTVRTKALGAISSLIRH-------NKPGIEAFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLNEN---AS--- 217 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~-------~~~~~~~f~~~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~~~---~~--- 217 (392)
++.++.|.++++.|.+++-+. ++......-....+. .+...+.+.++.+|..|.-++..++.-. +.
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~ 82 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSP 82 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 345778888888888876542 222222222222332 3566678888899999988888775210 00
Q ss_pred -------c--------------hHHHHhc--CchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCChhh
Q 016280 218 -------D--------------CSVVDKL--GFPRLMLHLASSED--PDVREAALRGLLELAREKADGS 261 (392)
Q Consensus 218 -------~--------------~~~l~~~--G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~~~ 261 (392)
+ ...+.+. +++..|+..+.+++ ..+...+++.|..|++..|++.
T Consensus 83 ~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~ 151 (239)
T PF11935_consen 83 PRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFM 151 (239)
T ss_dssp --GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGH
T ss_pred cccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHH
Confidence 0 1123322 67888888888765 6677888999999999988653
No 349
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=28.25 E-value=4.1e+02 Score=23.28 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCC-HHHHHH-hhCCCC-CHHHHHHHHHHHHHh
Q 016280 94 DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANG-LEPLLS-NFASDP-DVTVRTKALGAISSL 169 (392)
Q Consensus 94 d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~-l~~Ll~-LL~s~~-~~~vr~kAl~ALS~l 169 (392)
.+++-...+.+++.+.+++..+-..++.++.++.... +..+. +.+. +..++. ++.++. ....|.-++.++..+
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~---~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF---RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3445566777788777777999999999999999542 22111 2233 344444 555544 346888899999999
Q ss_pred hcCCcccHHHHHH
Q 016280 170 IRHNKPGIEAFRL 182 (392)
Q Consensus 170 vR~~~~~~~~f~~ 182 (392)
++....-.+.|..
T Consensus 145 ~~~p~~l~~lf~N 157 (168)
T PF12783_consen 145 CKDPQFLVDLFVN 157 (168)
T ss_pred HhChhHHHHHHHH
Confidence 9865444455543
No 350
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.89 E-value=7e+02 Score=25.83 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
+..|+..+.. .+..+|..|++-|--++.+++. ........+++.+..+....+..+|...-.++-++... ...+.
T Consensus 60 lkeLl~qlkH-hNakvRkdal~glkd~l~s~p~-~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~--~~~e~- 134 (393)
T KOG2149|consen 60 LKELLSQLKH-HNAKVRKDALNGLKDLLKSHPA-ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILP--ACKED- 134 (393)
T ss_pred HHHHHhhhcC-chHhhhHHHHHHHHHHHHhChH-HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhh--cchhh-
Confidence 5567777665 5789999999999999988653 33333566788888888888888888777777776532 11111
Q ss_pred HhcCch----HHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 223 DKLGFP----RLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 223 ~~~G~v----~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
..-++ +.+-..+.+--+.+|+-++..|.-+...+++-
T Consensus 135 -~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 135 -QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred -hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 11122 33333445677899999999999999999753
No 351
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.70 E-value=1.9e+02 Score=25.29 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=24.6
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 224 KLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
...+-..+..||.++|.++|..|+.+|...
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 334556678899999999999999999874
No 352
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=27.26 E-value=6.5e+02 Score=25.31 Aligned_cols=138 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhh--------CCCCCHHHHHHHHH
Q 016280 95 LHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNF--------ASDPDVTVRTKALG 164 (392)
Q Consensus 95 ~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL--------~s~~~~~vr~kAl~ 164 (392)
+.+...++.|..+-.. ..+++|..+...+.++.+. .++.++.+ .+..++++++ ...+-+.--+.-++
T Consensus 5 ll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~---~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 5 LLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQ---SQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred HHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHh---cccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Q ss_pred HHHHhhcCCcccHHHHHHcCh--------------------------HHHHHHhhcCCC--HHHHHHHHHHHHHHhhcCC
Q 016280 165 AISSLIRHNKPGIEAFRLANG--------------------------YAALRDALGSES--VKFQRKALNLIQYLLNENA 216 (392)
Q Consensus 165 ALS~lvR~~~~~~~~f~~~gG--------------------------l~~L~~lL~s~d--~kl~~kA~~lLs~L~~~~~ 216 (392)
.|...+|.+|.-...|...+. +..|+..++++. -..-+.++-++..+...++
T Consensus 82 ~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg~ig~~Are~LLll~~l~~~~~ 161 (353)
T PF10257_consen 82 TLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEGRIGDFAREGLLLLMSLASEDP 161 (353)
T ss_pred HHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCc
Q ss_pred cchHHHHh-cCchHHHHHhh
Q 016280 217 SDCSVVDK-LGFPRLMLHLA 235 (392)
Q Consensus 217 ~~~~~l~~-~G~v~~Lv~LL 235 (392)
...+.+++ ..+++.+..-|
T Consensus 162 ~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 162 ALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred HHHHHHHHcchhHHHHHHHH
No 353
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.13 E-value=1.6e+02 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=32.9
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 185 GYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 185 Gl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
|++.|+.-|.+++.++...|..+|...+.+. ...+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 8999999999999999999999999999765 444544443
No 354
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=26.94 E-value=3.7e+02 Score=32.08 Aligned_cols=142 Identities=21% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
++.|..++.+ .+..+|.+|..||.-+........... -+..++.++..-+.-+++-++-.+.+++...-...-.=
T Consensus 818 l~~l~~~~~s-~~~a~r~~~ar~i~~~~k~~~~e~m~~----v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 818 LPRLFFFVRS-IHIAVRYAAARCIGTMFKSATRETMAT----VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVD 302 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~ 302 (392)
...=+++.|...+......+|+.|-++...+..--+.....- ...++++|=++.-.+|+.|.+
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~-----------------~p~gls~eLl~~ke~erkFLe 955 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIP-----------------DPTGLSKELLASKEEERKFLE 955 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCC-----------------CCccccHHHHHhHHHHHHHHH
Q ss_pred HHHH
Q 016280 303 SLWN 306 (392)
Q Consensus 303 ~L~~ 306 (392)
.|+.
T Consensus 956 qlld 959 (1549)
T KOG0392|consen 956 QLLD 959 (1549)
T ss_pred HhcC
No 355
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=26.68 E-value=3.7e+02 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=19.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTI 126 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~i 126 (392)
+.+||.+|.+++..+...|+.+|.+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 58999999999999999999998653
No 356
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.19 E-value=2.1e+02 Score=34.53 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=47.6
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 190 RDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 190 ~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
-.+|.|.+..++.=+..+..++...... ..+..++..|+..+-++...-...||.+|..|++.++..
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~ 507 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSE 507 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHH
Confidence 3456788899999888888888876532 334457778888877666666689999999999877643
No 357
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.90 E-value=3.1e+02 Score=21.97 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHhhC----CHHHHHHHHHcCCHHHHHHhhCC-CCCHHHHHHHHHHHHHh
Q 016280 112 HANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSL 169 (392)
Q Consensus 112 ~~~IR~~Aa~vLg~iaqN----Np~~Q~~vl~~g~l~~Ll~LL~s-~~~~~vr~kAl~ALS~l 169 (392)
+-.+|..|+.+|+.++.+ ++..|.. .+..|.+.+.+ ..+...+--|+..|+.+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~R-----i~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPR-----ITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 558999999999999975 3444443 44567766553 34567888888888887
No 358
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=25.79 E-value=6.6e+02 Score=24.87 Aligned_cols=135 Identities=12% Similarity=0.161 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc-CCcccHHHHHHc--ChHH
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-HNKPGIEAFRLA--NGYA 187 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR-~~~~~~~~f~~~--gGl~ 187 (392)
++..++..+..++-++.++. ++.+-+.|.+. ...+...++.-+.++++ +.......|... =..+
T Consensus 38 ~~~~~~~~g~~l~~~iL~~~------------~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~ 104 (330)
T PF11707_consen 38 SDLSFQSYGLELIRSILQNH------------LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLK 104 (330)
T ss_pred cchhHHHHHHHHHHHHHHHH------------HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchh
Confidence 34446766776666555431 55666666664 46677789999999998 654555555543 2344
Q ss_pred HHHHhhcCC-----C--------HHHHHHHHHHHHHHhhc-CCcch-HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280 188 ALRDALGSE-----S--------VKFQRKALNLIQYLLNE-NASDC-SVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252 (392)
Q Consensus 188 ~L~~lL~s~-----d--------~kl~~kA~~lLs~L~~~-~~~~~-~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~ 252 (392)
.+.+++... + ..+|.....++-.++.. ++..+ +.+.+.+++..+..-|..++.++....+.+|..
T Consensus 105 ~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 105 SLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred hHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 566666421 1 16777777666666544 33333 455566788888888889999999999999997
Q ss_pred HHcCCC
Q 016280 253 LAREKA 258 (392)
Q Consensus 253 L~~~~~ 258 (392)
-+-.+.
T Consensus 185 ~Vl~~~ 190 (330)
T PF11707_consen 185 KVLKDS 190 (330)
T ss_pred HhccCC
Confidence 544443
No 359
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.73 E-value=2.1e+02 Score=27.11 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=35.2
Q ss_pred HHHhhCCHHHHHHHHHc---CCHHHHHHhhCCCC-CHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 124 TTIVQNNPRSQQLVMEA---NGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 124 g~iaqNNp~~Q~~vl~~---g~l~~Ll~LL~s~~-~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
..+..|+|.....-++. +.+..|+..+..+. +..+-...+.+|+.++|.-|.-...
T Consensus 94 ~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 94 SSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp GGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33445556444444443 56778888888766 6778888899999999987754443
No 360
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.52 E-value=5e+02 Score=29.18 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=84.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhh-CCH----HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 106 GYLKNSHANIRAKAGEVVTTIVQ-NNP----RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 106 ~lL~s~~~~IR~~Aa~vLg~iaq-NNp----~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
+-|+-++..||..|+.++-++-- -.| .-.+.+++. -+..|..+|.+ +-+.||.-|+--++-+...+-.-.-.-
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLED-PYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 55667889999999999876542 111 222333332 24556677665 467899888777766554321110000
Q ss_pred HHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 181 RLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 181 ~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+...-+..+..-+. .....||..+..-|.+++. +|..- .+.+.+ +|.|-.+|.+....||-.+...|..|-....
T Consensus 259 i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh-~~le~~-Lpal~~~l~D~se~VRvA~vd~ll~ik~vra 334 (1005)
T KOG1949|consen 259 ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSH-PLLEQL-LPALRYSLHDNSEKVRVAFVDMLLKIKAVRA 334 (1005)
T ss_pred HHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccch-hHHHHH-HHhcchhhhccchhHHHHHHHHHHHHHhhhh
Confidence 01111222222222 2346777777777888875 33332 333444 3366677778888899999888888765554
No 361
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.03 E-value=1.1e+03 Score=27.04 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hH-------HHHhcCc
Q 016280 157 TVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CS-------VVDKLGF 227 (392)
Q Consensus 157 ~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~-------~l~~~G~ 227 (392)
....+++.||-.+..+ ..+...++ ...++-.|.+.+....+.+...++.+++.||--...+ .+ .+.+..-
T Consensus 207 k~~~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~ 285 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKP 285 (1102)
T ss_pred HHHHHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcc
Confidence 4556677777777644 34443333 3456888888888888889999999999998544333 12 1223333
Q ss_pred h---HHHHHhhcCC-ChHHHHHHHHHHHHHHcCC
Q 016280 228 P---RLMLHLASSE-DPDVREAALRGLLELAREK 257 (392)
Q Consensus 228 v---~~Lv~LL~~~-d~~v~E~aL~aL~~L~~~~ 257 (392)
+ ..+|..|... ...++-.+...+-.+++.-
T Consensus 286 veRF~piv~gl~~~e~~~l~vacmq~INal~t~p 319 (1102)
T KOG1924|consen 286 VERFRPIVEGLDFLEKQQLQVACMQFINALVTSP 319 (1102)
T ss_pred hhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCH
Confidence 3 3456656544 5666677776555555543
No 362
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.74 E-value=1.9e+02 Score=24.13 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 016280 186 YAALRDALGSES----VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL 250 (392)
Q Consensus 186 l~~L~~lL~s~d----~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL 250 (392)
+..+.+++.... ..+...+..++.+.+. -.....+.+..+++.+..+|.+ +.+++.|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~--~~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWIS--WIPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT--TS-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHH--hCCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 445555555422 7888999999999886 3555677778899999999954 44488887665
No 363
>smart00087 PTH Parathyroid hormone.
Probab=24.68 E-value=59 Score=21.89 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHhhC
Q 016280 29 SEEDRRWFMEAMQSQ 43 (392)
Q Consensus 29 s~E~~~~L~~Al~~~ 43 (392)
+-+|+.||++.|.+.
T Consensus 19 ~~~R~~WLq~~L~~V 33 (36)
T smart00087 19 SLERREWLRKKLQDV 33 (36)
T ss_pred HHHHHHHHHHHHHhh
Confidence 358999999998764
No 364
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=24.36 E-value=1.1e+02 Score=27.65 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=61.6
Q ss_pred HHHHHHHhhcCCCCh--HHHH-H--cC--------ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHH
Q 016280 78 MLDELQEHVESIDMA--NDLH-S--IG--------GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLE 144 (392)
Q Consensus 78 aL~~L~~lve~iDnA--~d~~-~--lG--------gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~ 144 (392)
.++.++.++..+||- .|.. . .| ..+.+...++|++.=+|..|+.++...... ... ..+-
T Consensus 86 ~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-~~~-------~~~l 157 (213)
T PF08713_consen 86 DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-EDF-------DELL 157 (213)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-CHH-------HHHH
T ss_pred HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-cCH-------HHHH
Confidence 477888888888874 2221 1 11 233444677888888887776665444433 101 1122
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 185 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG 185 (392)
.++..+..+++.-||....|+|..+.+.++.....|+..+.
T Consensus 158 ~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~~~ 198 (213)
T PF08713_consen 158 EIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQKNS 198 (213)
T ss_dssp HHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHHS-
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHCc
Confidence 23333345567889999999999999999988888877654
No 365
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=24.34 E-value=79 Score=21.65 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=19.3
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHH
Q 016280 226 GFPRLMLHLASSEDPDVREAALRGL 250 (392)
Q Consensus 226 G~v~~Lv~LL~~~d~~v~E~aL~aL 250 (392)
.+...+..-+.++++.+|+.|+.+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4556667778888999999998754
No 366
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=24.28 E-value=5.6e+02 Score=23.47 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh-cCCcccHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV-MEANGLEPLLSNFASDPDVTVRTKALGAISSLI-RHNKPGIEA 179 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~v-l~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv-R~~~~~~~~ 179 (392)
|.|+.||+... ++.....+|+.++ +....+.+ ...|+-.-|.+.+.+....+. .||++-..+|. .-.......
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iV--s~Va~~v~~~~~~~W~eL~d~Ils~~~~e~-~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIV--SHVAYEVFDLQEGGWDELSDCILSLSENEP-VKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHH--HHHHHHHHhcCCCCchhHHHHHHHhhccch-HHHHHHHHhCCchhhhhHHHH
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHh-----hcCCcchHHHHhc--CchHHHHHhhcCCCh-HHHHHHHHHHH
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYLL-----NENASDCSVVDKL--GFPRLMLHLASSEDP-DVREAALRGLL 251 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~-----~~~~~~~~~l~~~--G~v~~Lv~LL~~~d~-~v~E~aL~aL~ 251 (392)
|.+.=.-.+...++.+.+.++....+.+.+.++ .+.+...+.+.+. -+++.+-+++..+.. .+..++++-+.
T Consensus 81 ~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e 160 (174)
T PF04510_consen 81 FMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFE 160 (174)
T ss_pred HHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q ss_pred HHHc
Q 016280 252 ELAR 255 (392)
Q Consensus 252 ~L~~ 255 (392)
.++.
T Consensus 161 ~~v~ 164 (174)
T PF04510_consen 161 SFVS 164 (174)
T ss_pred HHHH
No 367
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.11 E-value=3e+02 Score=24.43 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=50.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH---HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL---LSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L---l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
.+.....+++.-+|..|.-++.....+ .+-+..+ +..+..+.+.-||....|+|+-+.+.++.....
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 344566777777777776666554443 1223333 333344556789999999999999998888888
Q ss_pred HHHcChHH
Q 016280 180 FRLANGYA 187 (392)
Q Consensus 180 f~~~gGl~ 187 (392)
|+...+..
T Consensus 179 ~l~~~~~~ 186 (197)
T cd06561 179 FLEKNGLS 186 (197)
T ss_pred HHHHHHHh
Confidence 87766554
No 368
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=22.81 E-value=7.4e+02 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=23.7
Q ss_pred CChHHHHHhh--cCCCHHHHHHHHHHHHHHh
Q 016280 99 GGLAPLLGYL--KNSHANIRAKAGEVVTTIV 127 (392)
Q Consensus 99 Ggl~~Ll~lL--~s~~~~IR~~Aa~vLg~ia 127 (392)
-.+++|+..| .+..+-||-.|+.++|.+-
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~ 97 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG 97 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc
Confidence 3478888765 4678899999999999887
No 369
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=22.73 E-value=2e+02 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=23.3
Q ss_pred CChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhh
Q 016280 6 PNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQS 42 (392)
Q Consensus 6 ~~~~gLLkwsi~~sd~~~~~~~~s~E~~~~L~~Al~~ 42 (392)
.+|.. |+.|++|+=|... |.++++||.+.+..
T Consensus 11 ~~Wta-L~lAVen~wGG~~----s~~K~~~l~~~i~~ 42 (82)
T PF10273_consen 11 NRWTA-LQLAVENGWGGPD----SQEKADWLAEVIVD 42 (82)
T ss_pred hcCHH-HHHHHHhccCCcc----HHHHHHHHHHHHHH
Confidence 35665 6899999866543 78999999876654
No 370
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=22.70 E-value=1.3e+02 Score=18.36 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHh
Q 016280 114 NIRAKAGEVVTTIV 127 (392)
Q Consensus 114 ~IR~~Aa~vLg~ia 127 (392)
.+|..|+++||++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 48999999999883
No 371
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=22.62 E-value=2.4e+02 Score=27.86 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHH-HcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHH-HHHHHHHcCCHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLH-SIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPR-SQQLVMEANGLEP 145 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~-~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~-~Q~~vl~~g~l~~ 145 (392)
.+.|+..-.+..|+.++.+.+....-. ...--..++.++.++ ...+|..|..++..+...+|. ....+++ ++..
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~--~l~~ 251 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLIS--GLWK 251 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHH--HHHH
Confidence 456777777777777776654322111 122235567777777 899999999999999998886 4444442 3444
Q ss_pred HHH
Q 016280 146 LLS 148 (392)
Q Consensus 146 Ll~ 148 (392)
.+.
T Consensus 252 ~l~ 254 (339)
T PF12074_consen 252 WLS 254 (339)
T ss_pred HHH
Confidence 443
No 372
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=22.50 E-value=5.9e+02 Score=23.10 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHh
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSN 149 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~L 149 (392)
.|-+..|++.+.-+++.-....++... +..+..-|.. +.+||..+..+|..+++.+|.. +... ..+.+|=..
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~--~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~---v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEF--LDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE---VLQRLDSLVEPLRKT 114 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHH--HHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH---HHHCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH---HHHHHHHHHHHHHHH
Confidence 477888999999998866555566665 7777777766 9999999999999999999854 3332 345555444
Q ss_pred h
Q 016280 150 F 150 (392)
Q Consensus 150 L 150 (392)
|
T Consensus 115 L 115 (169)
T PF08623_consen 115 L 115 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 373
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=22.45 E-value=3.3e+02 Score=22.68 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKN--SHANIRAKAGEVVTTIVQNNP 131 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s--~~~~IR~~Aa~vLg~iaqNNp 131 (392)
.+..++.+++..+.++++-. .. +-..+.|-+..+|++ ..+++|..|..+...+.+.=+
T Consensus 27 ~~~~ek~~~i~ai~~lI~~~---g~-~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 27 KPYNEKKRALRSIGFLIKLM---GK-HISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 46688999999999998832 21 122346667777776 578899999999988887643
No 374
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.40 E-value=7.6e+02 Score=24.40 Aligned_cols=178 Identities=12% Similarity=0.164 Sum_probs=101.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHcCChHHHHH-hh----cC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 77 DMLDELQEHVESIDMANDLHSIGGLAPLLG-YL----KN----SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 77 ~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~-lL----~s----~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
+.|.-++.+++..++... +...-+++|+. .| ++ -++++-...+.++..+-+.....-..|++ .++.+.+
T Consensus 46 eIL~Li~t~i~~~~~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf~~Tl 123 (319)
T PF08767_consen 46 EILKLIETFISKAEDPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVFECTL 123 (319)
T ss_dssp HHHHHHHHHHHT-S-HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhccCCHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHH
Confidence 445555555665554443 33344677665 33 22 25666666667776666543322233554 3667778
Q ss_pred HhhCCCC--CHHHHHHHHHHHHHhhcCCcccHHHH---HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC----Ccc
Q 016280 148 SNFASDP--DVTVRTKALGAISSLIRHNKPGIEAF---RLANGYAALRDALGSESVKFQRKALNLIQYLLNEN----ASD 218 (392)
Q Consensus 148 ~LL~s~~--~~~vr~kAl~ALS~lvR~~~~~~~~f---~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~----~~~ 218 (392)
.++..+- -++.|..-..-|+++++++....-.+ .-.--+..+.-.+++++..+...++.++..|+..- +..
T Consensus 124 ~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~ 203 (319)
T PF08767_consen 124 PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEF 203 (319)
T ss_dssp HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHH
T ss_pred HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 8877652 37899888888889988765432211 01123455666778899999999999999998542 233
Q ss_pred hHHHHhcCchHHHH---HhhcCCC----hHHHHHHHHHHHHHHcC
Q 016280 219 CSVVDKLGFPRLML---HLASSED----PDVREAALRGLLELARE 256 (392)
Q Consensus 219 ~~~l~~~G~v~~Lv---~LL~~~d----~~v~E~aL~aL~~L~~~ 256 (392)
...+.+.-+...|. ..+.+++ .+.+-..+..|..++..
T Consensus 204 ~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~ 248 (319)
T PF08767_consen 204 ANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVES 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHc
Confidence 34555544444333 3333332 23445556666666554
No 375
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.12 E-value=1.1e+03 Score=26.13 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcCCcchHH-HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 199 KFQRKALNLIQYLLNENASDCSV-VDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 199 kl~~kA~~lLs~L~~~~~~~~~~-l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
.+..-...+|..+..-.++.... +.+.+....++.++-+++.++++.|...|.+...
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 34444556666666655555444 4456889999999999999999999999988775
No 376
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=21.58 E-value=1.8e+02 Score=28.26 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcCCcccHHHHHHcCh-------HHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcch-HHHHhcC
Q 016280 156 VTVRTKALGAISSLIRHNKPGIEAFRLANG-------YAALRDALGS-ESVKFQRKALNLIQYLLNENASDC-SVVDKLG 226 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG-------l~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~-~~l~~~G 226 (392)
.+-|+-|+-|++-++-.. .+.+.++..+. +..|++++.. ++.-+|+=|.-+|++|+..+.... ....+.+
T Consensus 138 lSPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 356788888888776532 23334433333 4456666654 679999999999999998765554 4555678
Q ss_pred chHHHHHhhcCC
Q 016280 227 FPRLMLHLASSE 238 (392)
Q Consensus 227 ~v~~Lv~LL~~~ 238 (392)
.|..|+.++...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 888888887643
No 377
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.37 E-value=2.4e+02 Score=19.77 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH
Q 016280 103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ 135 (392)
Q Consensus 103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~ 135 (392)
.++++|.+.++..|.+-.-+|+++.+=.|.=++
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 467889888888999999999999987775444
No 378
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=20.87 E-value=3.7e+02 Score=21.22 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=40.4
Q ss_pred hHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---CCCCHHHHHHHHHH
Q 016280 101 LAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---SDPDVTVRTKALGA 165 (392)
Q Consensus 101 l~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s~~~~~vr~kAl~A 165 (392)
+.|+..++ ++++.++|..-..||..+++++.. -+..| -+.++..+. .+.+..+...|...
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SG-W~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSG-WKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 67887775 457899999999999999987652 24555 556666554 33445555555443
No 379
>PRK13781 paaB phenylacetate-CoA oxygenase subunit PaaB; Provisional
Probab=20.51 E-value=38 Score=27.84 Aligned_cols=26 Identities=35% Similarity=0.731 Sum_probs=20.3
Q ss_pred cccc--eeeccCCCC--CCccccccccCCc
Q 016280 316 RDKG--LLVLPGEDA--PPPDVASKHFEPP 341 (392)
Q Consensus 316 ~~~~--~~~~~~~~~--~~~~~~~~~~~~~ 341 (392)
|+|| +||+|.++- -.||-.+.+|+|.
T Consensus 46 R~e~vsiWVVp~~~I~as~p~ek~~~f~p~ 75 (95)
T PRK13781 46 RNEGVSIWVVPSSAITASDPDEKGPFFEPA 75 (95)
T ss_pred ccCCcEEEEeeHHHccccChhhhhhccCcc
Confidence 5666 999999984 6777777788884
No 380
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=20.50 E-value=6e+02 Score=22.87 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHH-HcCCHHHHHHhhCC
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLG-YLKNSHANIRAKAGEVVTTIVQNNP-RSQQLVM-EANGLEPLLSNFAS 152 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~-lL~s~~~~IR~~Aa~vLg~iaqNNp-~~Q~~vl-~~g~l~~Ll~LL~s 152 (392)
..+++++..-++..+-.-+=+--|-++-+|. +..++++-++..+..+-.++..... ..+...+ ..+.+..++.++..
T Consensus 33 ~g~~~e~~~~v~~F~~~A~~~f~~~~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~~~~~~~r~~~~~~~ 112 (167)
T PF11157_consen 33 GGHLDELRRQVAGFQATAARYFGGDREALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALAQASPFERAWYFLRP 112 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhc
Confidence 4566666666665544333333455777776 5588999999999999988887644 3334455 55777888887665
Q ss_pred CCCHHHHHHHHH
Q 016280 153 DPDVTVRTKALG 164 (392)
Q Consensus 153 ~~~~~vr~kAl~ 164 (392)
.|.+++.....
T Consensus 113 -~d~~i~~~t~~ 123 (167)
T PF11157_consen 113 -ADPEIAQETWQ 123 (167)
T ss_pred -ccHHHHHHHHH
Confidence 57788776644
No 381
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=20.44 E-value=3.3e+02 Score=22.42 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCHHHHHHhhCC---CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC--CCHHHHHHHHHHHHHHhhc
Q 016280 141 NGLEPLLSNFAS---DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS--ESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 141 g~l~~Ll~LL~s---~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s--~d~kl~~kA~~lLs~L~~~ 214 (392)
|.+..+-..+.+ ..+...|++++.+|..+++-....... ..+-+..+|++ ..+.++..|+.+...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 344444444333 467789999999999999854444433 34445555554 3357888888887777753
No 382
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.04 E-value=1.7e+02 Score=28.65 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=39.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc--------------hHHHHhcCchHHHHHhhc
Q 016280 185 GYAALRDALGSESVKFQRKALNLIQYLLNENASD--------------CSVVDKLGFPRLMLHLAS 236 (392)
Q Consensus 185 Gl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~--------------~~~l~~~G~v~~Lv~LL~ 236 (392)
=+.-++.-|.+.+...|.+|+..|.|++.+.-.. ...+.+.|+++.|+.+|+
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3445666677778888999999999998763321 236678899999999885
Done!