Query 016280
Match_columns 392
No_of_seqs 282 out of 1173
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 2.7E-45 9.3E-50 357.3 21.8 275 33-314 13-291 (296)
2 4db6_A Armadillo repeat protei 99.9 2E-22 6.8E-27 182.2 21.3 185 71-256 25-210 (210)
3 4hxt_A De novo protein OR329; 99.9 2.4E-21 8.3E-26 178.1 23.3 188 71-259 15-203 (252)
4 3tpo_A Importin subunit alpha- 99.9 1.4E-21 4.8E-26 202.7 23.5 253 71-324 133-402 (529)
5 4db8_A Armadillo-repeat protei 99.9 8.2E-22 2.8E-26 182.7 18.5 185 73-258 27-212 (252)
6 3ul1_B Importin subunit alpha- 99.9 1.5E-21 5E-26 201.9 22.2 253 71-324 114-383 (510)
7 3nmw_A APC variant protein; AR 99.9 1.1E-21 3.8E-26 195.2 18.8 240 72-325 98-349 (354)
8 4db6_A Armadillo repeat protei 99.9 6.9E-21 2.3E-25 172.0 18.6 163 96-259 9-171 (210)
9 4b8j_A Importin subunit alpha- 99.9 1.5E-20 5.1E-25 193.4 21.2 251 72-324 132-396 (528)
10 4hxt_A De novo protein OR329; 99.9 2.9E-20 9.8E-25 170.9 20.7 188 71-259 57-245 (252)
11 4db8_A Armadillo-repeat protei 99.9 1.3E-20 4.5E-25 174.6 18.3 185 71-256 67-252 (252)
12 2jdq_A Importin alpha-1 subuni 99.8 9.4E-20 3.2E-24 181.7 21.6 252 71-324 78-343 (450)
13 3nmz_A APC variant protein; pr 99.8 4E-20 1.4E-24 189.8 19.2 231 73-316 215-457 (458)
14 1xm9_A Plakophilin 1; armadill 99.8 7.9E-20 2.7E-24 186.7 20.3 181 71-254 15-219 (457)
15 3ul1_B Importin subunit alpha- 99.8 1E-19 3.6E-24 188.1 21.3 188 70-258 69-264 (510)
16 1wa5_B Importin alpha subunit; 99.8 2.2E-19 7.4E-24 185.2 22.4 252 71-324 144-408 (530)
17 3tpo_A Importin subunit alpha- 99.8 4.5E-19 1.5E-23 183.8 23.6 253 71-325 89-361 (529)
18 4b8j_A Importin subunit alpha- 99.8 1.9E-18 6.6E-23 177.6 26.5 252 71-325 87-355 (528)
19 1wa5_B Importin alpha subunit; 99.8 3.2E-18 1.1E-22 176.5 26.1 253 71-325 100-367 (530)
20 3nmw_A APC variant protein; AR 99.8 4.6E-19 1.6E-23 176.3 19.1 191 71-261 140-340 (354)
21 3now_A UNC-45 protein, SD10334 99.8 1.3E-18 4.4E-23 189.0 20.3 228 93-323 489-732 (810)
22 3nmz_A APC variant protein; pr 99.8 1.1E-18 3.8E-23 179.1 18.5 191 71-261 256-456 (458)
23 1xm9_A Plakophilin 1; armadill 99.8 3E-18 1E-22 175.0 19.0 248 71-324 57-445 (457)
24 2jdq_A Importin alpha-1 subuni 99.8 1.2E-17 4.2E-22 166.4 22.6 187 71-258 205-393 (450)
25 3tt9_A Plakophilin-2; cell adh 99.8 7.4E-18 2.5E-22 158.5 15.7 182 73-256 25-230 (233)
26 3l6x_A Catenin delta-1; cateni 99.8 6.2E-17 2.1E-21 170.4 23.5 184 71-256 61-271 (584)
27 3tt9_A Plakophilin-2; cell adh 99.7 1.8E-16 6.2E-21 149.0 20.3 200 100-310 9-230 (233)
28 3now_A UNC-45 protein, SD10334 99.7 8.3E-17 2.9E-21 174.8 18.0 228 71-312 508-740 (810)
29 1jdh_A Beta-catenin; beta-cate 99.7 2.9E-16 9.8E-21 159.9 20.4 186 71-258 73-259 (529)
30 1xqr_A HSPBP1 protein; armadil 99.7 1.5E-16 5.1E-21 154.5 17.4 146 71-217 95-242 (296)
31 3l6x_A Catenin delta-1; cateni 99.7 8.8E-16 3E-20 161.7 23.7 203 97-310 46-271 (584)
32 2z6h_A Catenin beta-1, beta-ca 99.7 9E-16 3.1E-20 162.4 21.1 187 70-258 69-256 (644)
33 1jdh_A Beta-catenin; beta-cate 99.7 5.8E-16 2E-20 157.6 17.7 252 71-325 114-423 (529)
34 2z6g_A B-catenin; FULL-length, 99.7 2.7E-15 9.2E-20 163.0 21.0 187 70-258 205-392 (780)
35 2z6h_A Catenin beta-1, beta-ca 99.7 6.3E-15 2.2E-19 155.9 22.0 252 71-325 111-420 (644)
36 2z6g_A B-catenin; FULL-length, 99.5 3.7E-13 1.3E-17 146.1 23.7 249 71-324 247-514 (780)
37 3opb_A SWI5-dependent HO expre 99.4 3.5E-12 1.2E-16 137.1 18.5 165 92-258 450-638 (778)
38 3opb_A SWI5-dependent HO expre 99.4 1.6E-11 5.3E-16 132.2 19.1 187 70-259 469-687 (778)
39 3grl_A General vesicular trans 99.3 5.4E-11 1.9E-15 125.3 18.8 188 69-257 73-294 (651)
40 4gmo_A Putative uncharacterize 99.2 8E-11 2.7E-15 126.1 12.2 163 99-262 34-221 (684)
41 3grl_A General vesicular trans 99.0 1.8E-09 6.3E-14 113.7 14.2 188 71-258 135-345 (651)
42 3ltm_A Alpha-REP4; protein eng 99.0 8E-09 2.8E-13 92.9 15.9 118 102-253 53-170 (211)
43 3ltj_A Alpharep-4; protein eng 99.0 1.1E-08 3.8E-13 91.3 15.2 119 101-253 16-134 (201)
44 3ltj_A Alpharep-4; protein eng 98.9 4.4E-08 1.5E-12 87.4 18.1 139 71-253 27-165 (201)
45 1oyz_A Hypothetical protein YI 98.9 2.8E-08 9.7E-13 93.2 16.2 155 71-257 36-190 (280)
46 3ltm_A Alpha-REP4; protein eng 98.9 9.9E-08 3.4E-12 85.7 17.9 126 99-258 81-206 (211)
47 1oyz_A Hypothetical protein YI 98.9 6.3E-08 2.2E-12 90.8 16.6 196 96-324 20-217 (280)
48 4gmo_A Putative uncharacterize 98.8 1.3E-08 4.5E-13 108.9 11.6 184 70-254 46-257 (684)
49 2qk2_A LP04448P; mini spindles 98.6 9.2E-07 3.2E-11 81.6 17.0 176 70-258 27-208 (242)
50 2vgl_B AP-2 complex subunit be 98.6 1E-06 3.5E-11 92.3 17.5 176 72-259 100-315 (591)
51 2vgl_B AP-2 complex subunit be 98.6 3.6E-06 1.2E-10 88.2 21.3 166 72-258 27-192 (591)
52 4fdd_A Transportin-1; heat rep 98.5 2.7E-06 9.4E-11 92.2 17.9 246 71-324 141-425 (852)
53 4fdd_A Transportin-1; heat rep 98.5 3.8E-07 1.3E-11 99.0 10.5 182 71-259 269-475 (852)
54 1te4_A Conserved protein MTH18 98.5 1.3E-08 4.5E-13 85.6 -0.9 119 99-252 12-130 (131)
55 2qk1_A Protein STU2; STU2P, XM 98.5 1.9E-06 6.6E-11 80.9 13.6 183 70-257 28-222 (249)
56 3qml_C Protein SLS1, nucleotid 98.5 2.5E-06 8.7E-11 82.2 14.4 236 71-317 41-308 (315)
57 1b3u_A Protein (protein phosph 98.3 1.2E-05 4E-10 82.0 16.6 175 71-258 61-235 (588)
58 1b3u_A Protein (protein phosph 98.3 1.9E-05 6.4E-10 80.5 17.7 172 71-255 100-271 (588)
59 1ibr_B P95, importin beta-1 su 98.2 4.2E-06 1.4E-10 82.7 10.7 184 71-259 230-441 (462)
60 3dad_A FH1/FH2 domain-containi 98.2 5.6E-05 1.9E-09 73.9 18.2 188 47-245 116-326 (339)
61 2qk2_A LP04448P; mini spindles 98.1 3.8E-05 1.3E-09 70.6 14.4 146 103-257 19-164 (242)
62 1qgr_A Protein (importin beta 98.1 1.8E-05 6.1E-10 84.8 13.9 152 101-259 368-541 (876)
63 1w63_A Adapter-related protein 98.1 2.4E-05 8.3E-10 82.5 14.2 150 101-257 181-381 (618)
64 3b2a_A TON_1937, putative unch 98.1 0.00016 5.4E-09 67.5 17.6 176 70-258 45-221 (265)
65 2bpt_A Importin beta-1 subunit 98.1 2.7E-05 9.3E-10 83.3 14.3 178 73-259 346-533 (861)
66 1ibr_B P95, importin beta-1 su 98.1 2.2E-05 7.5E-10 77.5 11.9 155 100-256 129-289 (462)
67 2vgl_A Adaptor protein complex 98.0 0.0003 1E-08 74.4 20.0 169 70-259 50-220 (621)
68 1te4_A Conserved protein MTH18 98.0 5.8E-06 2E-10 69.2 5.2 87 101-210 44-130 (131)
69 1u6g_C TIP120 protein, CAND1; 98.0 0.00015 5.3E-09 81.5 18.3 182 71-258 19-207 (1230)
70 2bpt_A Importin beta-1 subunit 98.0 0.00034 1.2E-08 74.7 19.7 250 71-323 148-435 (861)
71 1w63_A Adapter-related protein 98.0 0.00025 8.5E-09 74.7 18.2 163 73-258 49-211 (618)
72 1qgr_A Protein (importin beta 97.9 0.00047 1.6E-08 73.8 20.2 250 71-324 143-433 (876)
73 2of3_A ZYG-9; multifunctional 97.9 0.00039 1.3E-08 66.1 16.9 194 71-282 59-263 (266)
74 2db0_A 253AA long hypothetical 97.8 0.0046 1.6E-07 55.9 20.4 178 76-285 50-228 (253)
75 3b2a_A TON_1937, putative unch 97.8 0.0013 4.3E-08 61.5 17.3 149 100-258 34-182 (265)
76 2qk1_A Protein STU2; STU2P, XM 97.8 0.00014 4.6E-09 68.2 11.0 154 104-258 21-178 (249)
77 4ffb_C Protein STU2; tubulin f 97.7 0.0013 4.6E-08 61.7 17.6 180 71-257 22-214 (278)
78 1u6g_C TIP120 protein, CAND1; 97.5 0.00037 1.3E-08 78.4 11.2 152 101-257 8-165 (1230)
79 2vgl_A Adaptor protein complex 97.5 0.0027 9.3E-08 67.0 16.8 94 72-175 125-220 (621)
80 3dad_A FH1/FH2 domain-containi 97.4 0.013 4.4E-07 57.3 19.8 155 102-258 121-289 (339)
81 3tjz_B Coatomer subunit gamma; 97.3 0.0097 3.3E-07 58.7 17.6 140 100-258 69-208 (355)
82 4ady_A RPN2, 26S proteasome re 97.1 0.0072 2.5E-07 66.6 15.8 100 143-258 579-679 (963)
83 3u0r_A Apoptosis inhibitor 5; 96.7 0.13 4.3E-06 52.6 19.2 135 102-258 32-166 (507)
84 2db0_A 253AA long hypothetical 96.5 0.07 2.4E-06 48.2 14.6 200 32-254 30-245 (253)
85 3tjz_B Coatomer subunit gamma; 96.5 0.02 6.8E-07 56.5 11.8 153 101-264 141-325 (355)
86 4ady_A RPN2, 26S proteasome re 96.1 0.051 1.7E-06 59.9 13.4 104 142-254 612-718 (963)
87 3eg5_B Protein diaphanous homo 96.0 0.23 7.7E-06 49.3 16.6 163 78-243 87-282 (383)
88 2f31_A Diaphanous protein homo 95.9 0.15 5.1E-06 47.0 14.1 145 88-235 33-208 (233)
89 2x19_B Importin-13; nuclear tr 95.9 0.17 5.8E-06 55.1 16.7 137 109-258 459-602 (963)
90 4hat_C Exportin-1; heat repeat 95.9 0.042 1.5E-06 61.3 11.9 142 111-258 465-621 (1023)
91 1ho8_A Vacuolar ATP synthase s 95.9 0.1 3.5E-06 53.3 13.6 167 90-257 260-478 (480)
92 1upk_A MO25 protein; transfera 95.6 1.8 6.2E-05 42.2 22.4 174 121-303 145-328 (341)
93 2x1g_F Cadmus; transport prote 95.6 0.12 4.2E-06 56.4 14.0 135 111-258 476-618 (971)
94 4ffb_C Protein STU2; tubulin f 95.4 0.75 2.6E-05 42.6 17.0 148 104-257 14-170 (278)
95 2bnx_A Diaphanous protein homo 95.2 0.43 1.5E-05 47.3 15.3 155 88-245 37-222 (386)
96 3m1i_C Exportin-1; heat repeat 95.0 0.41 1.4E-05 53.0 16.1 142 111-258 465-621 (1049)
97 1wa5_C Importin alpha RE-expor 94.9 0.35 1.2E-05 53.0 15.0 131 114-256 376-526 (960)
98 2x19_B Importin-13; nuclear tr 94.3 0.29 9.8E-06 53.2 12.5 137 115-259 423-560 (963)
99 3l9t_A Putative uncharacterize 94.3 1.4 4.6E-05 41.0 15.0 140 104-264 76-216 (240)
100 1lsh_A Lipovitellin (LV-1N, LV 94.1 1.4 4.7E-05 49.3 17.8 220 31-295 340-586 (1056)
101 1wa5_C Importin alpha RE-expor 94.0 0.28 9.6E-06 53.8 11.8 137 110-255 416-582 (960)
102 2f31_A Diaphanous protein homo 94.0 3.5 0.00012 37.6 17.9 119 139-258 41-183 (233)
103 2iw3_A Elongation factor 3A; a 94.0 0.97 3.3E-05 50.1 15.9 174 76-255 70-280 (986)
104 2fv2_A RCD1 required for cell 93.9 0.74 2.5E-05 43.3 12.6 185 71-257 14-226 (268)
105 1ho8_A Vacuolar ATP synthase s 93.8 0.06 2E-06 55.0 5.4 138 77-214 291-477 (480)
106 3eg5_B Protein diaphanous homo 93.4 2.1 7.3E-05 42.2 15.8 124 132-258 102-249 (383)
107 3m1i_C Exportin-1; heat repeat 92.9 1.6 5.6E-05 48.2 15.7 139 114-258 428-572 (1049)
108 1lrv_A LRV, leucine-rich repea 92.8 0.07 2.4E-06 49.8 3.8 110 102-248 101-216 (244)
109 1lrv_A LRV, leucine-rich repea 92.3 0.094 3.2E-06 48.9 4.0 125 101-262 76-211 (244)
110 2iw3_A Elongation factor 3A; a 92.2 0.91 3.1E-05 50.4 12.3 171 73-255 29-204 (986)
111 2x1g_F Cadmus; transport prote 92.1 1.2 4.1E-05 48.6 13.1 137 114-258 436-575 (971)
112 3gs3_A Symplekin, LD45768P; he 92.1 7.6 0.00026 36.2 21.2 180 71-261 28-249 (257)
113 3o2t_A Symplekin; heat repeat, 91.7 11 0.00038 37.2 19.4 174 73-260 40-261 (386)
114 3qml_C Protein SLS1, nucleotid 91.2 1.3 4.4E-05 42.6 10.5 105 143-254 73-188 (315)
115 2bnx_A Diaphanous protein homo 90.4 7.2 0.00025 38.4 15.7 118 140-258 46-187 (386)
116 2of3_A ZYG-9; multifunctional 90.2 7.9 0.00027 36.3 15.0 144 103-257 50-198 (266)
117 3c2g_A SYS-1 protein; beta-cat 90.1 1.5 5.1E-05 43.3 10.0 193 59-253 242-471 (619)
118 1x5b_A Signal transducing adap 89.9 0.43 1.5E-05 41.6 5.6 71 101-171 54-125 (163)
119 4hat_C Exportin-1; heat repeat 89.7 2.1 7.1E-05 47.7 12.1 104 154-259 465-573 (1023)
120 2fv2_A RCD1 required for cell 89.1 10 0.00035 35.6 14.5 136 76-213 74-224 (268)
121 1lsh_A Lipovitellin (LV-1N, LV 88.3 14 0.00048 41.1 17.7 195 26-259 368-580 (1056)
122 3ibv_A Exportin-T; karyopherin 88.3 7.4 0.00025 43.0 15.3 144 107-255 201-361 (980)
123 3hjl_A Flagellar motor switch 88.1 6.5 0.00022 38.1 13.0 29 270-298 284-312 (329)
124 3zyq_A Hepatocyte growth facto 87.7 2 6.7E-05 39.3 8.7 73 101-173 47-120 (226)
125 1mhq_A ADP-ribosylation factor 87.1 1.1 3.7E-05 38.4 6.2 73 101-173 40-118 (148)
126 1juq_A ADP-ribosylation factor 86.5 0.85 2.9E-05 40.1 5.3 73 101-173 52-130 (171)
127 3ibv_A Exportin-T; karyopherin 85.7 7.2 0.00024 43.1 13.4 109 48-172 5-120 (980)
128 3ebb_A Phospholipase A2-activa 85.4 4.4 0.00015 38.7 10.1 135 71-208 161-301 (304)
129 1dvp_A HRS, hepatocyte growth 85.4 2.3 7.9E-05 38.5 7.8 70 101-170 44-114 (220)
130 1x5b_A Signal transducing adap 85.3 2 6.7E-05 37.4 7.0 92 160-256 33-126 (163)
131 1juq_A ADP-ribosylation factor 85.0 2.1 7.1E-05 37.5 7.0 111 142-257 13-130 (171)
132 1elk_A Target of MYB1; superhe 84.9 1.3 4.5E-05 38.2 5.6 70 101-170 55-129 (157)
133 3gjx_A Exportin-1; transport, 84.8 18 0.00062 40.4 16.2 142 111-258 491-647 (1073)
134 3ldz_A STAM-1, signal transduc 84.4 2.8 9.7E-05 35.3 7.4 92 160-256 23-115 (140)
135 3ebb_A Phospholipase A2-activa 83.4 31 0.0011 32.7 19.0 203 27-245 76-296 (304)
136 1mhq_A ADP-ribosylation factor 83.4 3.1 0.00011 35.5 7.3 92 161-257 20-118 (148)
137 3g2s_A C-terminal fragment of 83.1 2.2 7.5E-05 36.6 6.2 74 101-174 50-129 (149)
138 3g2s_A C-terminal fragment of 82.2 6.8 0.00023 33.4 9.0 111 142-257 11-128 (149)
139 3ldz_A STAM-1, signal transduc 81.6 1.3 4.5E-05 37.5 4.2 69 101-170 44-113 (140)
140 3zyq_A Hepatocyte growth facto 79.9 5.7 0.0002 36.2 8.2 111 142-257 8-120 (226)
141 3gjx_A Exportin-1; transport, 79.2 11 0.00036 42.3 11.6 104 154-260 491-600 (1073)
142 3oc3_A Helicase MOT1, MOT1; re 73.6 18 0.0006 38.1 10.3 163 101-287 176-350 (800)
143 3u0r_A Apoptosis inhibitor 5; 72.6 85 0.0029 32.0 15.0 93 155-259 41-133 (507)
144 1dvp_A HRS, hepatocyte growth 71.6 8.6 0.00029 34.6 7.0 90 162-256 25-116 (220)
145 1elk_A Target of MYB1; superhe 69.2 14 0.00047 31.7 7.4 92 160-256 34-131 (157)
146 3o2t_A Symplekin; heat repeat, 61.8 1.1E+02 0.0036 30.2 13.1 108 141-254 63-182 (386)
147 3oc3_A Helicase MOT1, MOT1; re 61.3 10 0.00035 39.8 5.7 139 99-254 263-403 (800)
148 3l9t_A Putative uncharacterize 60.3 71 0.0024 29.4 10.7 128 145-290 74-212 (240)
149 2xpp_A IWS1, ECU08_0440; trans 59.3 66 0.0022 27.2 9.6 90 73-167 35-132 (145)
150 3a6p_A Exportin-5; exportin-5, 59.1 87 0.003 35.2 13.5 130 111-256 25-163 (1204)
151 3a6p_A Exportin-5; exportin-5, 57.8 90 0.0031 35.1 13.3 92 71-172 26-126 (1204)
152 3pst_A Protein DOA1; protein d 54.9 1.1E+02 0.0039 30.4 11.9 135 75-216 243-392 (425)
153 3c2g_A SYS-1 protein; beta-cat 54.1 52 0.0018 32.6 9.0 91 163-258 263-357 (619)
154 3rru_A TOM1L1 protein; structu 49.5 17 0.00059 31.0 4.4 74 101-174 55-133 (152)
155 4atg_A TAF6; transcription, TF 48.7 1.4E+02 0.0049 26.4 11.8 136 27-170 4-161 (196)
156 3vld_A DNA mismatch repair pro 46.8 2.4E+02 0.0082 28.6 12.9 133 70-213 91-225 (500)
157 1n4k_A Inositol 1,4,5-trisphos 46.0 1.8E+02 0.0062 28.2 11.8 94 73-174 248-380 (381)
158 1vdy_A Hypothetical protein (R 45.9 40 0.0014 28.4 6.0 92 162-257 31-132 (140)
159 3l3f_X Protein DOA1, DOA1/UFD3 44.0 1.7E+02 0.0059 28.4 11.1 128 75-215 180-328 (362)
160 1upk_A MO25 protein; transfera 43.4 2.3E+02 0.008 27.3 16.4 132 82-214 147-284 (341)
161 1sz9_A PCF11 protein; RNA poly 41.4 1.5E+02 0.0052 24.6 9.1 90 110-210 22-111 (144)
162 1vsy_5 Proteasome activator BL 41.2 34 0.0012 38.0 6.2 112 99-217 843-970 (997)
163 3gs3_A Symplekin, LD45768P; he 39.7 2E+02 0.0067 26.4 10.4 130 114-254 30-172 (257)
164 3gae_A Protein DOA1; UFD3, CDC 35.0 64 0.0022 29.6 6.2 167 27-217 34-221 (253)
165 1vdy_A Hypothetical protein (R 34.0 2E+02 0.0067 24.1 8.5 68 101-171 51-130 (140)
166 1bwx_A Parathyroid hormone; pe 33.6 24 0.00084 23.1 2.1 15 29-43 17-31 (39)
167 3r88_A Anthranilate phosphorib 33.2 1E+02 0.0034 30.1 7.6 72 4-90 22-93 (377)
168 1et1_A Parathyroid hormone; he 32.2 24 0.00082 22.6 1.9 13 30-42 18-30 (34)
169 3l3f_X Protein DOA1, DOA1/UFD3 30.8 2.4E+02 0.0081 27.4 9.7 132 116-258 180-329 (362)
170 3pst_A Protein DOA1; protein d 25.9 2.7E+02 0.0092 27.7 9.2 131 116-257 243-391 (425)
171 3ff5_A PEX14P, peroxisomal bio 25.4 99 0.0034 21.7 4.3 32 49-80 11-52 (54)
172 1vsy_5 Proteasome activator BL 24.7 60 0.002 36.0 4.7 106 101-213 135-245 (997)
173 2xpp_A IWS1, ECU08_0440; trans 24.0 3.2E+02 0.011 22.9 10.9 89 159-252 37-133 (145)
174 4gfq_A Ribosome-recycling fact 22.4 1E+02 0.0035 27.7 5.0 64 24-87 125-189 (209)
175 3nfq_A Transcription factor IW 22.3 3.7E+02 0.013 23.2 8.3 94 73-171 50-151 (170)
176 3rru_A TOM1L1 protein; structu 22.1 1.8E+02 0.0061 24.5 6.2 75 143-217 55-134 (152)
177 3nfq_A Transcription factor IW 20.2 4.2E+02 0.014 22.8 10.8 78 174-255 66-151 (170)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=2.7e-45 Score=357.30 Aligned_cols=275 Identities=27% Similarity=0.351 Sum_probs=239.9
Q ss_pred HHHHHHHHhhCCccHHHHHHHHHHHhcCcH--Hhhhh-CCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHH-hh
Q 016280 33 RRWFMEAMQSQTVDVIKRMKEITLVMQTPE--QVLES-QGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLG-YL 108 (392)
Q Consensus 33 ~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~--~~l~~-~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~-lL 108 (392)
..||++||.++ +|++++||+++.++.+|. ...+. .+.+.++++.|++.|.++++++|||++|++.||+++|+. +|
T Consensus 13 ~~~~~~~~~~~-~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL 91 (296)
T 1xqr_A 13 LVPRGSHMRGQ-RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91 (296)
T ss_dssp -------CCSC-HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred hHHHHHHHcCC-CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence 47999999874 999999999999998862 11111 124568999999999999999999999999999999999 99
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHH
Q 016280 109 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA 188 (392)
Q Consensus 109 ~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~ 188 (392)
.++++.||+.|+|+||++++|||.+|+.|++.|++++|+.+|.++++.+++++|+||||+++|++++..+.|...||++.
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999987668899999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhh
Q 016280 189 LRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAED 268 (392)
Q Consensus 189 L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~ 268 (392)
|+.+|++++.+++.+|+|+|++|+.++++.+..+++.|+++.|+.||.+++..++++|+++|.+|+++.++....| +..
T Consensus 172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~-~~~ 250 (296)
T 1xqr_A 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC-REP 250 (296)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH-HCG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH-hcc
Confidence 9999999999999999999999999888889999999999999999999999999999999999999976655555 445
Q ss_pred HHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCcc
Q 016280 269 NEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSS 314 (392)
Q Consensus 269 ~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~ 314 (392)
...|..+|+++++.|+. .++++|+.++|..|+..||+++++
T Consensus 251 ~~~l~~lL~~~~~~lq~-----~e~~~e~~~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 251 ELGLEELLRHRCQLLQQ-----HEEYQEELEFCEKLLQTCFSSPAD 291 (296)
T ss_dssp GGCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46689999999988874 356899999999999999998653
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2e-22 Score=182.18 Aligned_cols=185 Identities=21% Similarity=0.257 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHHHhh-cCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHV-ESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lv-e~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++.+..++..|..+. .+.++...+.+.|+++.|+.+|.++++.+|..|+|+|++++.+++..+..+++.|+++.|+.+
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 4567788999999999 455778899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
|.+ .+..++..|+|+|++++.+++.....+...|+++.|+.+|.+++.+++..|+++|.+|+..++..+..+.+.|+++
T Consensus 105 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~ 183 (210)
T 4db6_A 105 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183 (210)
T ss_dssp TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred HcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 887 4789999999999999998888888888999999999999999999999999999999988788888999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
.|+.++.+++..+++.|+.+|.+|+++
T Consensus 184 ~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 184 KLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999753
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.89 E-value=2.4e-21 Score=178.07 Aligned_cols=188 Identities=19% Similarity=0.288 Sum_probs=174.8
Q ss_pred CHHHHHHHHHHHHHhhcCCC-ChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESID-MANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iD-nA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++.+..++..|..++...+ +...+.+.|+++.|+.+|++++..+|..|+++|++++.+++..+..+++.|+++.|+.+
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 35677889999999988764 88999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+.+ .+..++..|+++|++++.+++.....+...|+++.|+.+|.+++..++..|+++|.+|+...+.....+.+.|+++
T Consensus 95 l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 173 (252)
T 4hxt_A 95 LTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 173 (252)
T ss_dssp TTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHH
Confidence 886 5789999999999999988888899999999999999999999999999999999999987777778899999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.|+.++.+++..+++.|+.+|.+|+.+++.
T Consensus 174 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 203 (252)
T 4hxt_A 174 VLVKLLTSTDSEVQKEAARALANIASGPTS 203 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSBHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999986643
No 4
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.88 E-value=1.4e-21 Score=202.67 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=206.5
Q ss_pred CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-...|...|.+++..- ++...+++.|++++|+.+|.+++..+|..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus 133 ~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 133 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 4566678889999988643 567889999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC----CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 150 FASDP----DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 150 L~s~~----~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
|.... ...+++.++|+|++++++..+........++++.|+.+|.+++..++..|+|+|++|+.........+.+.
T Consensus 213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~ 292 (529)
T 3tpo_A 213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 292 (529)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT
T ss_pred HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc
Confidence 87532 35678899999999999987766666678999999999999999999999999999998777778888999
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHH
Q 016280 226 GFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGA 293 (392)
Q Consensus 226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~ 293 (392)
|+++.|+.+|.+++..+++.++++|++|+.+++......+ .+....|..+|. --+..|...+.+....
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999999999988763211110 133333333332 3334444455555555
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280 294 AREERHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 294 ~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
+.+. .++..|+..+.+....+|++++|+|.
T Consensus 373 v~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~ 402 (529)
T 3tpo_A 373 VVNH-GLVPFLVGVLSKADFKTQKAAAWAIT 402 (529)
T ss_dssp HHHT-THHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHhc-CcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5553 57788888888888889999888874
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.88 E-value=8.2e-22 Score=182.75 Aligned_cols=185 Identities=20% Similarity=0.229 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280 73 QDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 73 e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
+.+..++..|..++. +-++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..+..+++.|+++.|+.+|.
T Consensus 27 ~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 106 (252)
T 4db8_A 27 QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106 (252)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 445556666644333 3355678889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
+ ++..++..|+++|++++.+.+.....+...|+++.|+.+|.+++..++..|+++|.+|+..++.....+.+.|+++.|
T Consensus 107 ~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 185 (252)
T 4db8_A 107 S-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185 (252)
T ss_dssp C-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred C-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence 7 578999999999999998876655888999999999999999999999999999999998777778889999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 232 LHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 232 v~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.+|.+++..+++.|+.+|.+|+.+++
T Consensus 186 ~~ll~~~~~~v~~~a~~~L~~l~~~~~ 212 (252)
T 4db8_A 186 VQLLSSPNEQILQEALWALSNIASGGN 212 (252)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999997664
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.88 E-value=1.5e-21 Score=201.93 Aligned_cols=253 Identities=14% Similarity=0.148 Sum_probs=210.6
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
.++-...|...|.++.. +-++...+++.|++++|+.+|.+++..+|..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 45566788899999865 55778899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC----CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc
Q 016280 150 FASDP----DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL 225 (392)
Q Consensus 150 L~s~~----~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~ 225 (392)
+.+.. ...+++.++|++++++++..+........++++.|+++|.+++..++..|+|+|++|+.........+.+.
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 87532 34678899999999999887666666678899999999999999999999999999998777777888999
Q ss_pred CchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh------------hhhhhhhHHHHHHHHHHHHhhhcCCChhhHHH
Q 016280 226 GFPRLMLHLASSEDPDVREAALRGLLELAREKADGS------------AIKLAEDNEKLKQLLGERIKGISLMSPEDLGA 293 (392)
Q Consensus 226 G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~------------~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~ 293 (392)
|+++.|+.+|.+++..+++.++++|++|+++++... ..++.++...++...---+..|...+.+....
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999999999999999998876321 12223444444444444555666556666565
Q ss_pred HHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280 294 AREERHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 294 ~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
+.+. .++..|+..+.+....+|++++|+|.
T Consensus 354 v~~~-g~i~~Lv~lL~~~~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 354 VVNH-GLVPFLVGVLSKADFKTQKEAAWAIT 383 (510)
T ss_dssp HHHT-THHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHhc-CCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6554 67888888888888999999998874
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.88 E-value=1.1e-21 Score=195.19 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHhhcCCC-ChHHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHH
Q 016280 72 PQDIEDMLDELQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iD-nA~d~~~lGg-l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~ 148 (392)
++-+..|...|.+++..-+ +...+...|| +++|+.+|.++++++|..|+|+|++++.+ ++..+..|.+.|++++|++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 3456789999999997665 4555656777 99999999999999999999999999986 7889999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchH
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCS 220 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~----kl~~kA~~lLs~L~~---~~~~~~~ 220 (392)
+|.+..+..++..|+.||.+|+.+++..+..+. ..||++.|+.+|.+.+. .++..|+++|++|+. .+++.++
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 865545789999999999999987766777777 78999999999987654 699999999999996 5778889
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 016280 221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAREERH 299 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~ 299 (392)
.+.+.|+++.|+.+|++++..+++.|+.+|.+|+..++....... .+....|.++|. ..+ ..+++ .
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~-------s~~----~~i~~--~ 324 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-------SKH----KMIAM--G 324 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT-------CSS----HHHHH--H
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh-------CCC----HHHHH--H
Confidence 999999999999999999999999999999999976653321110 233333333332 111 22332 4
Q ss_pred HHHHHHHHHhCCCccccccceeeccC
Q 016280 300 LVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 300 ~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
-++.|.+.+.+.|..+++.+ .+-||
T Consensus 325 A~~aL~nL~~~~~~~~~~~~-~~~~~ 349 (354)
T 3nmw_A 325 SAAALRNLMANRPAKYKDAN-IMSPG 349 (354)
T ss_dssp HHHHHHHHHTTCCGGGC---------
T ss_pred HHHHHHHHHcCCHHHHhhhc-ccCCc
Confidence 68999999999999888665 44444
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=6.9e-21 Score=172.02 Aligned_cols=163 Identities=21% Similarity=0.230 Sum_probs=150.3
Q ss_pred HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 96 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 96 ~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
...|+.++|+.+|+++++.+|..|+|+|++++..++..+..+++.|+++.|+.+|.+ .++.++..|+++|++++.+++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence 346788999999999999999999999999999999999999999999999999887 4889999999999999999888
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
....++..|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++.|+.+|.+++..+++.|+.+|.+++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999998777778889999999999999999999999999999999998
Q ss_pred CCCh
Q 016280 256 EKAD 259 (392)
Q Consensus 256 ~~~~ 259 (392)
+++.
T Consensus 168 ~~~~ 171 (210)
T 4db6_A 168 GGNE 171 (210)
T ss_dssp SCHH
T ss_pred CCcH
Confidence 8653
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=1.5e-20 Score=193.40 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 72 PQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
++-+..++..|..++.. .++...++..|++++|+.+|.++++.+|..|+|+|++++.+++.++..+++.|++++|+.+|
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL 211 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence 67788899999999986 56788889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
..+.+..++..|+|+|++++++.+.. ......++++.|+.+|.+.+..++..|+++|++|+...+...+.+.+.|+++.
T Consensus 212 ~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 212 NEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 76678999999999999999986443 34456999999999999999999999999999999876666778889999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHH------------HhhhcCCChhhHHHHHHH
Q 016280 231 MLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGER------------IKGISLMSPEDLGAAREE 297 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~------------~~~i~~~~~ed~~~~~ee 297 (392)
|+.+|.+++..+++.|+.+|++|+.+++......+ .+....|..+|.+. +..|...+.+....+.+.
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~ 370 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINA 370 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Confidence 99999999999999999999999997764322111 23344455555432 222332344443333332
Q ss_pred HHHHHHHHHHHhCCCccccccceeecc
Q 016280 298 RHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 298 ~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
.++..|+..+-.....+|++++|+|.
T Consensus 371 -~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 371 -GIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp -TCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45666777776677788888887764
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.86 E-value=2.9e-20 Score=170.86 Aligned_cols=188 Identities=18% Similarity=0.251 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+.+-+..++..|..++.. .++...+.+.|+++.|+.+|.++++.+|..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 467788999999999987 6778889999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+.+ .++.++..|+++|++++.+++.....+...|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++
T Consensus 137 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 215 (252)
T 4hxt_A 137 LTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215 (252)
T ss_dssp TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH
T ss_pred HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 886 5789999999999999998887778889999999999999999999999999999999987777888999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.|+.++.+++..+++.|+.+|.+|+...+.
T Consensus 216 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 216 VLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999987763
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=1.3e-20 Score=174.60 Aligned_cols=185 Identities=21% Similarity=0.239 Sum_probs=170.5
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-+..++..|..++. +.++...+.+.|+++.|+.+|.++++.+|..|+|+|++++.+.+..+..+++.|+++.|+.+
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 46778899999999997 56788999999999999999999999999999999999999988776889999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
|.+ .+..++..|+++|++++.+.+.....+...|+++.|+.+|.+++..++..|+++|.+|+..++..+..+.+.|+++
T Consensus 147 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 225 (252)
T 4db8_A 147 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 225 (252)
T ss_dssp GGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Confidence 876 5889999999999999998888888888999999999999999999999999999999988788888999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
.|+.++.+++..+++.|+.+|.+|+++
T Consensus 226 ~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 226 KLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998753
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.84 E-value=9.4e-20 Score=181.69 Aligned_cols=252 Identities=17% Similarity=0.146 Sum_probs=201.5
Q ss_pred CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-+..++..|..++.. .++...+++.|+++.|+.+|+++++.+|..|+|+|++++.+++..+..+++.|+++.|+.+
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 456778899999998874 3567778889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCC-cccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 150 FASDPDVTVRTKALGAISSLIRHN-KPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~-~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
+.++.+..+|..|+++|++++++. +.....+ ..++++.|+.++.+.+..++..|+|+|++|+...+.....+.+.|++
T Consensus 158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 236 (450)
T 2jdq_A 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236 (450)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH
Confidence 987678999999999999999876 3332233 38999999999999999999999999999998766677788889999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHHHH
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAARE 296 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~~e 296 (392)
+.|+.+|.+++..+++.|+.+|.+++.+.+......+ .+....|..+|. .-+..|...+.+....+.+
T Consensus 237 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 316 (450)
T 2jdq_A 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999988763221110 123333333332 2233344344555444444
Q ss_pred HHHHHHHHHHHHhCCCccccccceeecc
Q 016280 297 ERHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 297 e~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
. .++..|+..+-.....+|++++|+|.
T Consensus 317 ~-~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 317 A-NIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp T-THHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 56777777777777889999888875
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=189.85 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhhcCCC-ChHHHHHcCC-hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHh
Q 016280 73 QDIEDMLDELQEHVESID-MANDLHSIGG-LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iD-nA~d~~~lGg-l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~L 149 (392)
+-+..|...|.+++.+-+ +...+...|| +++|+.+|.+++.+++..|+|+|++++.+ ++..+..|.+.|++++|+.+
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l 294 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence 346788899999998765 3445556666 99999999999999999999999999985 78899999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH-HcChHHHHHHhhcCCCH----HHHHHHHHHHHHHhh---cCCcchHH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFR-LANGYAALRDALGSESV----KFQRKALNLIQYLLN---ENASDCSV 221 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~-~~gGl~~L~~lL~s~d~----kl~~kA~~lLs~L~~---~~~~~~~~ 221 (392)
|.+..+..++..|+.||.+|+.+++..+..+. ..||++.|+.+|.+.+. .++..|+++|++|+. .+++.++.
T Consensus 295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 66656789999999999999986766777777 78999999999987654 599999999999996 67788899
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 016280 222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAREERHL 300 (392)
Q Consensus 222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~ 300 (392)
+.+.|+++.|+.+|++++..+++.|+.+|.+|+..++....... .+....|.++| ...+ ..+++ ..
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL-------~s~~----~~v~~--~A 441 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-------HSKH----KMIAM--GS 441 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT-------TCSS----HHHHH--HH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-------hCCC----HHHHH--HH
Confidence 99999999999999999999999999999999976653221110 12233333222 2111 12232 46
Q ss_pred HHHHHHHHhCCCcccc
Q 016280 301 VDSLWNACYNEPSSLR 316 (392)
Q Consensus 301 ~~~L~~~~f~~~~~~~ 316 (392)
++.|.+.+.+.|...|
T Consensus 442 a~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 442 AAALRNLMANRPAKYK 457 (458)
T ss_dssp HHHHHHHHTCCSCC--
T ss_pred HHHHHHHHcCCHhhhc
Confidence 8999999998887655
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.84 E-value=7.9e-20 Score=186.74 Aligned_cols=181 Identities=13% Similarity=0.162 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHhhcCCCChH-HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDMAN-DLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~-d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++.+..|...|..++..-++.. .+.+.||+++|+.+|.++++.++..|+|+|.+++..|+..+..|++.|++++|+++
T Consensus 15 ~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l 94 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94 (457)
T ss_dssp CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 44667889999999987666655 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh--------cCC--------CHHHHHHHHHHHHHHhh
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--------GSE--------SVKFQRKALNLIQYLLN 213 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL--------~s~--------d~kl~~kA~~lLs~L~~ 213 (392)
|....+..++..|+|||++++.+ +.....++. ||++.|+++| .+. +..+++.|+|+|++|+.
T Consensus 95 L~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 95 LRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred HhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 98446889999999999999988 667777888 9999999999 332 46777799999999998
Q ss_pred cCCcchHHHHhc-CchHHHHHhhcC------CChHHHHHHHHHHHHHH
Q 016280 214 ENASDCSVVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELA 254 (392)
Q Consensus 214 ~~~~~~~~l~~~-G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~ 254 (392)
. ++.+..+.+. |+++.|+.+|.+ .+..+++.++.+|.+|+
T Consensus 173 ~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 173 A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 6 7788899998 999999999985 46678999999999886
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.84 E-value=1e-19 Score=188.06 Aligned_cols=188 Identities=11% Similarity=0.140 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL 146 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L 146 (392)
.+++....+...++.+...-.| -..+++.|++|+|+.+|.+ +++.+|..|+|+|+++|..++..+..|++.|++|.|
T Consensus 69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L 148 (510)
T 3ul1_B 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 148 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 3567777888889888765555 4789999999999999975 678999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCCcchHH
Q 016280 147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-----VKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-----~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
+.+|.+ ++..++..|+|||++|+.+++..+..+...||++.|+.+|.+.+ ..+++.++|++++++.+.......
T Consensus 149 v~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 227 (510)
T 3ul1_B 149 ISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227 (510)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence 999987 58899999999999999998888999999999999999998754 467889999999999876555555
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
....|+++.|+.+|.+++.+++..|+.+|.+|+.+..
T Consensus 228 ~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~ 264 (510)
T 3ul1_B 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 264 (510)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh
Confidence 5567899999999999999999999999999998775
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.83 E-value=2.2e-19 Score=185.18 Aligned_cols=252 Identities=16% Similarity=0.168 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-+..++..|..++... ++...++..|++++|+.+|.++++.+|..|+|+|++++.+++..+..++..|+++.|+.+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 223 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence 4567788999999998854 567778889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+.+ .+..++..|+|+|++++++..+....+...++++.|+.+|.+.+..++..|+++|.+|+...+.....+.+.|+++
T Consensus 224 l~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 224 FNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp GGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred hcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 887 6889999999999999998744445666789999999999999999999999999999987667778888999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHHHHH
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAAREE 297 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~~ee 297 (392)
.|+.+|.+++..+++.|+.+|++|+.+++......+ .+....|..+|. .-+..|...+.+....+.+.
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~ 382 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 382 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 999999999999999999999999987753221111 123333333332 22333333444444444332
Q ss_pred HHHHHHHHHHHhCCCccccccceeecc
Q 016280 298 RHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 298 ~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
.++..|+..+-.....+|++++|+|.
T Consensus 383 -~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 383 -NLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp -TCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667777666677788888888774
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.83 E-value=4.5e-19 Score=183.80 Aligned_cols=253 Identities=11% Similarity=0.132 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
+++....++..+..++..-.+ -..+++.|++|+|+.+|. ++++.++..|+|+|++++.+++.....+++.|++|.|+
T Consensus 89 d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv 168 (529)
T 3tpo_A 89 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI 168 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 566777888888887754444 578999999999999996 46799999999999999999999889999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-----VKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-----~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
.+|.+ ++..++..|+|||++|+.+++.....++..||++.|+.+|.+.+ ..+++.++|++++++.+........
T Consensus 169 ~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 247 (529)
T 3tpo_A 169 SLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 247 (529)
T ss_dssp HHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred HHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 99877 58899999999999999998888999999999999999998654 4678899999999998765555555
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh-hhhhHHHHHHHHH-----------HHHhhhcCCChhh
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIK-LAEDNEKLKQLLG-----------ERIKGISLMSPED 290 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~-~~~~~~~L~~~L~-----------~~~~~i~~~~~ed 290 (392)
...|+++.|+.+|.+++.+++..|+.+|.+++.+........ ..+....|.++|. .-+..|-..+.+.
T Consensus 248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence 667899999999999999999999999999998775321100 0233444444443 2223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 291 LGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 291 ~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
...+.+ ...+..|...+.+....+|++++|+|..
T Consensus 328 ~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 328 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 222222 2445666676777777788888888753
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.82 E-value=1.9e-18 Score=177.58 Aligned_cols=252 Identities=12% Similarity=0.120 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHHhhcCC--CChHHHHHcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESI--DMANDLHSIGGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i--DnA~d~~~lGgl~~Ll~lL~s~~-~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
+++.+..|+..|..++... ++...++..|+++.|+.+|.+++ +.+|..|+|+|++++..++..+..+++.|+++.|+
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 5677788999998886644 56788999999999999999876 99999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcC
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL-GSESVKFQRKALNLIQYLLNENASDCSVVDKLG 226 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL-~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G 226 (392)
.+|.+ ++..++..|+|+|++++.+.+.....+...|+++.|+.+| .+.+..++..|+|+|++|+...+.. ......|
T Consensus 167 ~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~ 244 (528)
T 4b8j_A 167 KLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRP 244 (528)
T ss_dssp HHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTT
T ss_pred HHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHH
Confidence 99887 5889999999999999998888888888999999999999 6678999999999999999865433 3445589
Q ss_pred chHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHH
Q 016280 227 FPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAA 294 (392)
Q Consensus 227 ~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~ 294 (392)
+++.|+.+|.+++..++..++.+|.+|+.+.+......+ .+....|..+|. .-+..|...+.+....+
T Consensus 245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999987653211110 122333333332 22333433344433333
Q ss_pred HHHHHHHHHHHHHHhCC-CccccccceeeccC
Q 016280 295 REERHLVDSLWNACYNE-PSSLRDKGLLVLPG 325 (392)
Q Consensus 295 ~ee~~~~~~L~~~~f~~-~~~~~~~~~~~~~~ 325 (392)
.+ ...+..|+..+... ...+|++++|+|..
T Consensus 325 ~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 325 ID-HQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33 24577788887777 78999999998864
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.81 E-value=3.2e-18 Score=176.46 Aligned_cols=253 Identities=11% Similarity=0.086 Sum_probs=201.6
Q ss_pred CHHHHHHHHHHHHHhhcCC--CChHHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESI--DMANDLHSIGGLAPLLGYLKNS-HANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i--DnA~d~~~lGgl~~Ll~lL~s~-~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
+++.+..++..|..++... ++...+++.|+++.|+.+|.++ ++.+|..|+|+|++++..++..+..+++.|+++.|+
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 5677888999999997753 4457788999999999999997 899999999999999999998999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280 148 SNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGF 227 (392)
Q Consensus 148 ~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~ 227 (392)
.+|.+ .+..+|..|+|+|++++.+.+.....+...|+++.|+.+|.+.+..++..|+|+|++|+.............|+
T Consensus 180 ~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~ 258 (530)
T 1wa5_B 180 QLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258 (530)
T ss_dssp HHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred HHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhH
Confidence 99986 58899999999999999988878888889999999999999999999999999999999765344445667899
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHH-----------HHHHhhhcCCChhhHHHHH
Q 016280 228 PRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLL-----------GERIKGISLMSPEDLGAAR 295 (392)
Q Consensus 228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L-----------~~~~~~i~~~~~ed~~~~~ 295 (392)
++.|+.+|.+++..++..++.+|.+|+.+.+......+ .+....|..+| -.-+..|...+.+....+.
T Consensus 259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 338 (530)
T 1wa5_B 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 338 (530)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999987653211110 12223333332 2223334333344333333
Q ss_pred HHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 296 EERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 296 ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
+. .++..|+..+......+|++++|+|..
T Consensus 339 ~~-~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 339 NA-GVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HT-THHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred Hc-chHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 32 567788888877788899999998864
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.81 E-value=4.6e-19 Score=176.28 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=169.9
Q ss_pred CHHHHHHHHHHHHHhhcC--CCChHHHHHcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHH
Q 016280 71 TPQDIEDMLDELQEHVES--IDMANDLHSIGGLAPLLGY-LKNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPL 146 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~--iDnA~d~~~lGgl~~Ll~l-L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~L 146 (392)
+++-++.+...|.++... .+|...+.+.||+++|+.+ +.+.+.++++.|+.+|.+++..++..+..+. ..|+++.|
T Consensus 140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L 219 (354)
T 3nmw_A 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 219 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH
Confidence 556778888889888864 4577888999999999997 4678899999999999999997777787787 68999999
Q ss_pred HHhhCCCCCH---HHHHHHHHHHHHhhc---CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280 147 LSNFASDPDV---TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS 220 (392)
Q Consensus 147 l~LL~s~~~~---~vr~kAl~ALS~lvR---~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~ 220 (392)
+.+|.+..+. .++..|+++|++++. +++.....+++.||++.|+.+|.+.+..+++.|+++|++|+..++..+.
T Consensus 220 v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 299 (354)
T 3nmw_A 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 299 (354)
T ss_dssp HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999865433 689999999999987 6778888899999999999999999999999999999999977788899
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280 221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 261 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~ 261 (392)
.+.+.|+++.|+.||.+++..+++.|+.+|.+|+.+.+...
T Consensus 300 ~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999988543
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-18 Score=189.04 Aligned_cols=228 Identities=15% Similarity=0.080 Sum_probs=177.7
Q ss_pred HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC
Q 016280 93 NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 93 ~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~ 172 (392)
..+++.|++++|+.+|.++++.+|+.|+|+|++++.+ +.++..|++.|++++|+.+|.+. +..+|..|+|||++++++
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcC
Confidence 5677899999999999999999999999999999975 66999999999999999999874 678999999999999986
Q ss_pred CcccHHHH---HHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280 173 NKPGIEAF---RLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 248 (392)
Q Consensus 173 ~~~~~~~f---~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~ 248 (392)
..+. ..| ...|+++.|+.+|.++ +...+..|+++|++|+..++..++.+++.|+++.|+.||.+++..+|+.|+.
T Consensus 567 ~~p~-~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 567 INPE-VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp SCHH-HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CChh-hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 5442 222 1357999999999876 4455678999999999877777889999999999999999999999999999
Q ss_pred HHHHHHcCCChhhhhhh-hhhHHHHHHHHH-----------HHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCcccc
Q 016280 249 GLLELAREKADGSAIKL-AEDNEKLKQLLG-----------ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLR 316 (392)
Q Consensus 249 aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~-----------~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~ 316 (392)
+|++|+.+......-.. .+....|..++. .-+..|...+.+...++.+.-..+..|...+-+....+|
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 99999986542111000 122222222222 222333323445555555522577899999999999999
Q ss_pred ccceeec
Q 016280 317 DKGLLVL 323 (392)
Q Consensus 317 ~~~~~~~ 323 (392)
++|+|+|
T Consensus 726 ~~A~~aL 732 (810)
T 3now_A 726 HRGIVII 732 (810)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=179.13 Aligned_cols=191 Identities=12% Similarity=0.124 Sum_probs=169.2
Q ss_pred CHHHHHHHHHHHHHhhcC--CCChHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-HcCCHHHH
Q 016280 71 TPQDIEDMLDELQEHVES--IDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVM-EANGLEPL 146 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~--iDnA~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl-~~g~l~~L 146 (392)
+++-++.+...|.++... .+|...+.+.||+++|+.+| .+.+..+++.|+.+|++++..++..+..|. ..|+++.|
T Consensus 256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 567778888999998764 35678888999999999975 667899999999999999997777788887 78999999
Q ss_pred HHhhCCCCCH---HHHHHHHHHHHHhhc---CCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280 147 LSNFASDPDV---TVRTKALGAISSLIR---HNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS 220 (392)
Q Consensus 147 l~LL~s~~~~---~vr~kAl~ALS~lvR---~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~ 220 (392)
+.+|.+..+. .++..|+|+|++++. +++.....+++.||++.|+.+|.+.+..+++.|+|+|++|+..+++.+.
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 415 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999875443 589999999999986 6778888899999999999999999999999999999999977788899
Q ss_pred HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhh
Q 016280 221 VVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGS 261 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~ 261 (392)
.+.+.|+++.|+.+|.+++..+++.|+.+|.+|+.+++...
T Consensus 416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 99999999999999999999999999999999999987543
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.78 E-value=3e-18 Score=175.03 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHHHhhcC-CCChHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVES-IDMANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~-iDnA~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
+++-.+.|...|.++... -+|...+++.||+++|+.+|. +++++++..|+|+|++++.+ +..+..+++ |++++|+.
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ 134 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLAD 134 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHH
Confidence 456677899999999875 688888999999999999998 88999999999999999998 778888999 99999999
Q ss_pred hhC--------CC-------CCHHHHHHHHHHHHHhhcCCcccHHHHHHc-ChHHHHHHhhcC-----------------
Q 016280 149 NFA--------SD-------PDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYAALRDALGS----------------- 195 (392)
Q Consensus 149 LL~--------s~-------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~-gGl~~L~~lL~s----------------- 195 (392)
+|. +. .+..+++.|+|||++++++ +.....+.+. |+++.|+.+|++
T Consensus 135 ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~ 213 (457)
T 1xm9_A 135 RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213 (457)
T ss_dssp HTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHH
T ss_pred HHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHH
Confidence 993 22 3567888999999999987 6777778777 999998877753
Q ss_pred --------------------------------------------------------------------------------
Q 016280 196 -------------------------------------------------------------------------------- 195 (392)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (392)
T Consensus 214 ~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~ 293 (457)
T 1xm9_A 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293 (457)
T ss_dssp HHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred HHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence
Q ss_pred --CCHHHHHHHHHHHHHHhhcCCcc-----hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hh
Q 016280 196 --ESVKFQRKALNLIQYLLNENASD-----CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AE 267 (392)
Q Consensus 196 --~d~kl~~kA~~lLs~L~~~~~~~-----~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~ 267 (392)
+++.+++.|+|+|++|+.++... +..+.+.|+++.|+.||.+++.+++..|+.+|.+++.+..- ...+ .+
T Consensus 294 ~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~--~~~i~~~ 371 (457)
T 1xm9_A 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQ 371 (457)
T ss_dssp HCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--HHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--HHHHHHh
Confidence 12456777899999999765432 22344689999999999999999999999999999986531 1110 22
Q ss_pred hHHHHHHHHHHH-----------------HhhhcCCChhhHHHHHHHHHHHHHHHHHHhCC-Cccccccceeecc
Q 016280 268 DNEKLKQLLGER-----------------IKGISLMSPEDLGAAREERHLVDSLWNACYNE-PSSLRDKGLLVLP 324 (392)
Q Consensus 268 ~~~~L~~~L~~~-----------------~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~-~~~~~~~~~~~~~ 324 (392)
....|.++|... +..|-..+.+. .....+-..++.|.+.+.++ ...+++++.|+|.
T Consensus 372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 333333333321 11121223332 23333446788888888888 7889999998885
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.78 E-value=1.2e-17 Score=166.36 Aligned_cols=187 Identities=20% Similarity=0.235 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHhhcCC-CChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESI-DMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~i-DnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+.+-+..++..|.+++... ++...+...|+++.|+.+|.+++..+|..|+++|++++.+++...+.+++.|+++.|+.+
T Consensus 205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 4566778889999998854 556778889999999999999999999999999999999999888888999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchHHHHhcCch
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCSVVDKLGFP 228 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-~~~~~~~l~~~G~v 228 (392)
+.+ ++..+|..|+++|++++++++.....++..|+++.|+.+|.+++.++|..|+|+|++|+.. .+.....+.+.|++
T Consensus 285 l~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i 363 (450)
T 2jdq_A 285 LSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCI 363 (450)
T ss_dssp TTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCH
T ss_pred HcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 886 5789999999999999998887778888899999999999999999999999999999976 45566778889999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.|+.++.+++..+++.|+.+|.+++...+
T Consensus 364 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 364 KPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 999999999999999999999999987654
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.76 E-value=7.4e-18 Score=158.48 Aligned_cols=182 Identities=14% Similarity=0.180 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280 73 QDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 73 e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
+.+..+...|..++. +.++...+++.||+|+|+.+|.++++++|..|+|+|.+++..++..+..|.+.|+|++|+++|.
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~ 104 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLK 104 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHc
Confidence 445567778888884 5567888999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc----------------CCCHHHHHHHHHHHHHHhhcC
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----------------SESVKFQRKALNLIQYLLNEN 215 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~----------------s~d~kl~~kA~~lLs~L~~~~ 215 (392)
+..+..++..|+.||.+|..+ +.....+.. +|++.|+.++. +.+..++..|+.+|++|+..+
T Consensus 105 ~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 105 QTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp HCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC
Confidence 556789999999899988754 455666654 68999998763 236799999999999999877
Q ss_pred CcchHHHHhc-CchHHHHHhhcC------CChHHHHHHHHHHHHHHcC
Q 016280 216 ASDCSVVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELARE 256 (392)
Q Consensus 216 ~~~~~~l~~~-G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~ 256 (392)
++.+..+.+. |+|+.|+.+++. .+...+|.|+.+|.+|+-.
T Consensus 183 ~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 183 ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 7888888876 789999999984 3667999999999999754
No 26
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.76 E-value=6.2e-17 Score=170.38 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHHhhc-CCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVE-SIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve-~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~ 148 (392)
+++.+..|...|..++. +-++...+++.||+++|+.+|.+++..+|..|+|+|++++.. |+..+..|++.|+|++|+.
T Consensus 61 ~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~ 140 (584)
T 3l6x_A 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHH
Confidence 45666778889999885 678889999999999999999999999999999999999985 7999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc------------------CCCHHHHHHHHHHHHH
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG------------------SESVKFQRKALNLIQY 210 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~------------------s~d~kl~~kA~~lLs~ 210 (392)
+|.+..+..++..|++||.+|.. ++.....++ .+|++.|++++. +.+..++..|+++|++
T Consensus 141 LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~N 218 (584)
T 3l6x_A 141 LLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218 (584)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99976678999999999999987 456666676 578999999871 2368999999999999
Q ss_pred HhhcCCcchHHHHhc-CchHHHHHhhcC------CChHHHHHHHHHHHHHHcC
Q 016280 211 LLNENASDCSVVDKL-GFPRLMLHLASS------EDPDVREAALRGLLELARE 256 (392)
Q Consensus 211 L~~~~~~~~~~l~~~-G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~ 256 (392)
|+..++..+..+.+. |+++.|+.+|++ .+...+|.|+.+|.+|+..
T Consensus 219 Ls~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 219 VSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 998776768888875 778899999874 5678999999999999865
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.73 E-value=1.8e-16 Score=148.98 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=157.7
Q ss_pred ChHHHHHhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 100 GLAPLLGYLKNSHA--NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 100 gl~~Ll~lL~s~~~--~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
.+++++.+|.++++ .++..|++.|.+++.+++..+..|.+.|+||+|+++|.+ .++.++..|+|||.+++.+++.+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 47999999999887 999999999999999999999999999999999999988 578999999999999999888889
Q ss_pred HHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc----------------CCCh
Q 016280 178 EAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS----------------SEDP 240 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~----------------~~d~ 240 (392)
..+...||++.|+++|. +.+..+++.|+.+|.+|... +..+..+.+. .++.|+.++. ..+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998 57899999999999999864 5566677764 5888988763 1367
Q ss_pred HHHHHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280 241 DVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN 310 (392)
Q Consensus 241 ~v~E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~ 310 (392)
++++.|..+|.+|+..++. .+++| .+.-..|...++..+..-+ .++. .+| .-|-.|.+.||.
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~---~~~k--~~E--n~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQ---PDDK--ATE--NCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTC---TTCH--HHH--HHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhccc---chhH--HHH--HHHHHHHHHHhh
Confidence 9999999999999987642 23334 3333555555554443311 1221 111 235677887774
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.72 E-value=8.3e-17 Score=174.83 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHH-HHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQ-LVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~-~vl~~g~l~~Ll~ 148 (392)
+++-++.+...|.++..+-++...+++.|++++|+.+|.+++..+|..|+|+|++++.+ +|..-- .....|++++|+.
T Consensus 508 s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~ 587 (810)
T 3now_A 508 SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587 (810)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHH
Confidence 56778899999999998888999999999999999999999999999999999999874 553310 0012369999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh-cCc
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK-LGF 227 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~-~G~ 227 (392)
+|.++.+...+..|++||++++.+.+.....++..||++.|+.+|.+++..+|+.|+++|++|+.+ +..+..+++ .|.
T Consensus 588 LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~ 666 (810)
T 3now_A 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDR 666 (810)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCc
Confidence 998765656677899999999998877788899999999999999999999999999999999975 455556665 799
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhh--hhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHH
Q 016280 228 PRLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLA--EDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLW 305 (392)
Q Consensus 228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~--~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~ 305 (392)
++.|+.|+.+++..+|+.|+.+|.+|+.+++......+. +....|.++|.+ . | ..++ ...++.|.
T Consensus 667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-------~---d-~~vq--~~A~~aL~ 733 (810)
T 3now_A 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-------P---S-PAVQ--HRGIVIIL 733 (810)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-------S---S-HHHH--HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-------C---C-HHHH--HHHHHHHH
Confidence 999999999999999999999999999965533222211 233333333331 1 1 1222 34688888
Q ss_pred HHHhCCC
Q 016280 306 NACYNEP 312 (392)
Q Consensus 306 ~~~f~~~ 312 (392)
+.+.+++
T Consensus 734 NL~~~s~ 740 (810)
T 3now_A 734 NMINAGE 740 (810)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 8887654
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.71 E-value=2.9e-16 Score=159.91 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+++.+..+...|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.++
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll 152 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 152 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH
Confidence 56778889999999998888999999999999999999999999999999999999998887888899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
.+ .+..++..++.+|.+++.+++.....+...||++.|+.+|.+.+ ..++..++.+|.+|+. ++..+..+.+.|+++
T Consensus 153 ~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~ 230 (529)
T 1jdh_A 153 NK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 230 (529)
T ss_dssp GC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHH
T ss_pred hc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence 87 57899999999999999988888999999999999999998754 6677778889999986 567788899999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.|+.++.+++..+++.++.+|.+|+.+.+
T Consensus 231 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 231 ALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 99999999999999999999999988764
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.71 E-value=1.5e-16 Score=154.54 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHhhcCCC-ChHHHHHcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESID-MANDLHSIGGLAPLLGYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iD-nA~d~~~lGgl~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
+++-++.|+..|..++.+-+ +...+++.||+++|+.+|.+ ++..+|..|+|+|++++.+++..++.|++.|+++.|+.
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH
Confidence 56778899999999998654 56778899999999999985 58999999999999999999999889999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
+|.+ .+..++.+|+|||++++.+++.....+++.|+++.|+.+|.+++.+++..|+.+|.+|+...+.
T Consensus 175 lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 175 AMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 9987 5899999999999999999888899999999999999999999999999999999999986433
No 31
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.71 E-value=8.8e-16 Score=161.65 Aligned_cols=203 Identities=15% Similarity=0.105 Sum_probs=164.0
Q ss_pred HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC-Ccc
Q 016280 97 SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH-NKP 175 (392)
Q Consensus 97 ~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~-~~~ 175 (392)
..+++++|+.+|.++++.++..|+++|.+++..++..+..|.+.|+||+||.+|.+ .+..++..|+|||.+|+.+ ++.
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHH
Confidence 46789999999999999999999999999999889999999999999999999987 5889999999999999986 578
Q ss_pred cHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc------------------
Q 016280 176 GIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS------------------ 236 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~------------------ 236 (392)
+...++..||++.|+.+|.+ .+..++..|+++|.+|+. ++..+..+++ +.++.|+.++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 89999999999999999997 678999999999999987 4677777776 46999999871
Q ss_pred CCChHHHHHHHHHHHHHHcCCCh---hhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhC
Q 016280 237 SEDPDVREAALRGLLELAREKAD---GSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYN 310 (392)
Q Consensus 237 ~~d~~v~E~aL~aL~~L~~~~~~---~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~ 310 (392)
..+.++++.|..+|.+|+.+++. .+.++ .+....|...|+..+..-.. ++ ...| ..|..|++.||.
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~---~~--~~~e--nav~aL~NLs~~ 271 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDS---DS--KLVE--NCVCLLRNLSYQ 271 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCC---SC--HHHH--HHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCc---cH--HHHH--HHHHHHHHhhcc
Confidence 23679999999999999998753 23444 34444555555544322211 11 1111 357899999987
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.69 E-value=9e-16 Score=162.40 Aligned_cols=187 Identities=12% Similarity=0.099 Sum_probs=169.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
.+++.+..+...|..+....++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 35677888999999999988889999999999999999999999999999999999999887788888999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
|.+. +..++..++.+|++++.+++.....+...||++.|+.+|.+.+ .+++..++.+|.+|+. .+..+..+++.|++
T Consensus 149 L~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l 226 (644)
T 2z6h_A 149 LNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM 226 (644)
T ss_dssp GGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHH
T ss_pred HCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCH
Confidence 9874 6788889999999999888888899999999999999998764 7888899999999985 57778899999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.|+.++.+.+..+++.++.+|.+|+.+.+
T Consensus 227 ~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 227 QALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 999999999999999999999999988654
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.68 E-value=5.8e-16 Score=157.61 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-+..++..|..++...++ ...+.+.|+++.|+.+|.+++..++..++.+|++++..|+..+..+.+.|+++.|+.+
T Consensus 114 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456678899999999887544 5566689999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHH---------------------------------------HH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAA---------------------------------------LR 190 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~---------------------------------------L~ 190 (392)
+.+..+..++..+..+|.+++. ++.....+...|+++. |+
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~ 272 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 272 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHH
Confidence 8866555566666666666664 3344555555555554 44
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC--CChHHHHHHHHHHHHHHcCCChh--hhhhh-
Q 016280 191 DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS--EDPDVREAALRGLLELAREKADG--SAIKL- 265 (392)
Q Consensus 191 ~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~--~d~~v~E~aL~aL~~L~~~~~~~--~~~~~- 265 (392)
++|.+++..++..|+++|++|+..++..+..+.+.|+++.|+.+|.+ ++..+++.|+.+|.+|+.+.+.. .+..+
T Consensus 273 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 55555667777788888888877666678888899999999999975 34799999999999998875431 00000
Q ss_pred -hhhHHHHHHHHH------------HHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 266 -AEDNEKLKQLLG------------ERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 266 -~~~~~~L~~~L~------------~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
.+....|.++|. .-+..+.. +.+....+.+. .++..|+..+-.....+|++++|++..
T Consensus 353 ~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHT-THHHHHHHHHHHHHHHHC---------
T ss_pred HcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHc-CCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 122233333222 12223332 23333444433 567888887777778999999998875
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.66 E-value=2.7e-15 Score=162.98 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=169.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
.+++.+..++..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus 205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence 36778889999999998888888899999999999999999999999999999999999988888889899999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES-VKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
|.+ .+..++..++.+|.+++.+++.....+...||++.|+.+|.+.+ ..++..++.+|.+|+. .+..+..+++.|++
T Consensus 285 L~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l 362 (780)
T 2z6g_A 285 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM 362 (780)
T ss_dssp GGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH
T ss_pred Hhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH
Confidence 987 57889999999999999888888999999999999999998765 5667788899999986 56778889999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.|+.++.+.+..+++.|+.+|.+|+....
T Consensus 363 ~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999998764
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.65 E-value=6.3e-15 Score=155.90 Aligned_cols=252 Identities=15% Similarity=0.149 Sum_probs=183.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDM-ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-+..++..|..++...+. ...+.+.|+++.|+.+|.+++..++..++.+|++++..++..+..+.+.|+++.|+.+
T Consensus 111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l 190 (644)
T 2z6h_A 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence 456778899999999887544 4566689999999999999999999999999999999899999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-----------------------------------
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALG----------------------------------- 194 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~----------------------------------- 194 (392)
+.+.....++..++.+|.+++. ++.....++..|+++.|+.++.
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv 269 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 269 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHH
Confidence 9887667788888888888885 4556777777777777666554
Q ss_pred ----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCCh--hhhh-h-
Q 016280 195 ----SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREKAD--GSAI-K- 264 (392)
Q Consensus 195 ----s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~~--~~~~-~- 264 (392)
+.+..++..|+++|.+|+..++..+..+.+.|+++.|+.+|.+. ...+++.|+.+|.+|+.+.+. .... .
T Consensus 270 ~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~ 349 (644)
T 2z6h_A 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 349 (644)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45667777777777777766666678888999999999999863 379999999999999876542 1110 0
Q ss_pred hhhhHHHHHHHHHH------------HHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeeccC
Q 016280 265 LAEDNEKLKQLLGE------------RIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLPG 325 (392)
Q Consensus 265 ~~~~~~~L~~~L~~------------~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~~ 325 (392)
..+....|.++|.+ -+..|.. +.+....+.+. ..+..|...+......+|+++.|++..
T Consensus 350 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~-~~~~~~~i~~~-~~i~~Lv~lL~~~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 350 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHT-THHHHHHHHHHHHHHHHTTC-------
T ss_pred HccChHHHHHHhCccCchHHHHHHHHHHHHHcc-CHHHHHHHHHc-CCHHHHHHHHhccchhhhhHhhhcccc
Confidence 01233333333331 1223322 23333444443 678888888888888999999999886
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.55 E-value=3.7e-13 Score=146.14 Aligned_cols=249 Identities=14% Similarity=0.122 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+++-+..++..|..++...++. ..+.+.|+++.|+.+|.+++..++..|+.+|..++..|+..+..+.+.|+++.|+.+
T Consensus 247 ~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~l 326 (780)
T 2z6g_A 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326 (780)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 4667788999999999876554 455579999999999999999999999999999999899999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPR 229 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~ 229 (392)
+.+.....++..++.+|.+++. ++.....++..|+++.|+.++.+.+..++..|+++|.+|+...... ....++++
T Consensus 327 L~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~ 402 (780)
T 2z6g_A 327 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLG 402 (780)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHH
Confidence 9887677778888999999986 4567788889999999999999999999999999999999765332 12247899
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhh-hhhHHHHHHHHHH-------------HHhhhcCCChhh--H-H
Q 016280 230 LMLHLASSEDPDVREAALRGLLELAREKADGSAIKL-AEDNEKLKQLLGE-------------RIKGISLMSPED--L-G 292 (392)
Q Consensus 230 ~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~-~~~~~~L~~~L~~-------------~~~~i~~~~~ed--~-~ 292 (392)
.|+.+|.+.+..+++.|+.+|.+|+.+.+......+ .+....|.++|.+ -+..|...+.+. . .
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 999999999999999999999999988753211100 2333444444433 122232222221 0 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCc-cccccceeecc
Q 016280 293 AAREERHLVDSLWNACYNEPS-SLRDKGLLVLP 324 (392)
Q Consensus 293 ~~~ee~~~~~~L~~~~f~~~~-~~~~~~~~~~~ 324 (392)
.+.+. ..+..|...+-.... .+|++++|+|.
T Consensus 483 ~v~~~-~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 483 AVRLH-YGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHT-TCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 22221 335666666665554 78888888765
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.5e-12 Score=137.13 Aligned_cols=165 Identities=14% Similarity=0.192 Sum_probs=134.4
Q ss_pred hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCH--HHHHHHHHHHHHh
Q 016280 92 ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDV--TVRTKALGAISSL 169 (392)
Q Consensus 92 A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~--~vr~kAl~ALS~l 169 (392)
...+++.|++++|+.++.++++.+|..|+|+|++++.+ +.++..+++.|++++|+.+|.+.++. .+|..|+.||+++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999966 88999999999999999999876443 2899999999999
Q ss_pred hcCCcccHHHHH---HcChHHHHHHhhcC-CCH-------------HHHHHHHHHHHHHhhcCC----cchHHHHhc-Cc
Q 016280 170 IRHNKPGIEAFR---LANGYAALRDALGS-ESV-------------KFQRKALNLIQYLLNENA----SDCSVVDKL-GF 227 (392)
Q Consensus 170 vR~~~~~~~~f~---~~gGl~~L~~lL~s-~d~-------------kl~~kA~~lLs~L~~~~~----~~~~~l~~~-G~ 227 (392)
.-...+.. .|- ..|+++.|+.+|.. +.. .-+..|+.+|.+|+.... +.+..+++. |+
T Consensus 529 lis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 529 LIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 86544332 332 14999999999983 221 237789999999998642 235667875 99
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 228 PRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
++.|+.+|.+++..+|..|+.+|++|+.+..
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 9999999999999999999999999998554
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.6e-11 Score=132.15 Aligned_cols=187 Identities=18% Similarity=0.215 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHH---HHHHHHHHHHHHhh-CCHHHHHHHHH---cCC
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHAN---IRAKAGEVVTTIVQ-NNPRSQQLVME---ANG 142 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~---IR~~Aa~vLg~iaq-NNp~~Q~~vl~---~g~ 142 (392)
.++.-++.+...|..++.+-++...+++.||+++|+.+|.+.... +|..|+.+|+++.- .||.. .|-. .|+
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~a 546 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNA 546 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccc
Confidence 367788899999999999999999999999999999999886544 89999999999984 56754 1211 389
Q ss_pred HHHHHHhhCCCCCH-------------HHHHHHHHHHHHhhcCCc----ccHHHHHHc-ChHHHHHHhhcCCCHHHHHHH
Q 016280 143 LEPLLSNFASDPDV-------------TVRTKALGAISSLIRHNK----PGIEAFRLA-NGYAALRDALGSESVKFQRKA 204 (392)
Q Consensus 143 l~~Ll~LL~s~~~~-------------~vr~kAl~ALS~lvR~~~----~~~~~f~~~-gGl~~L~~lL~s~d~kl~~kA 204 (392)
+++|+.+|..++.. --+..|+.||.||+.... .....++.. |+++.|..+|.+++..+|+.|
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA 626 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRST 626 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHH
Confidence 99999999832111 237799999999998752 235666774 999999999999999999999
Q ss_pred HHHHHHHhhcCCcch-HHHHhcC------chHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 205 LNLIQYLLNENASDC-SVVDKLG------FPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 205 ~~lLs~L~~~~~~~~-~~l~~~G------~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
++++++|+. ++..+ +.+...+ -++.|+.|+.++|.++|..|..+|.++++..+.
T Consensus 627 ~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ 687 (778)
T 3opb_A 627 LELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687 (778)
T ss_dssp HHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence 999999996 44443 2343222 377899999999999999999999999877664
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.31 E-value=5.4e-11 Score=125.28 Aligned_cols=188 Identities=18% Similarity=0.200 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCC------------------ChHHHH-HcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC
Q 016280 69 GVTPQDIEDMLDELQEHVESID------------------MANDLH-SIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN 129 (392)
Q Consensus 69 ~~~~e~~~~aL~~L~~lve~iD------------------nA~d~~-~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN 129 (392)
..+.|-...+|+.|..+....+ ++..|. +.++++.|+.+|++.+-.+|..|..+|..++.+
T Consensus 73 ~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 73 RSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp TTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc
Confidence 3466667778888877666443 233443 458899999999999999999999999999999
Q ss_pred CHH-HHHHHHHc-CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCC----HHHHHH
Q 016280 130 NPR-SQQLVMEA-NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSES----VKFQRK 203 (392)
Q Consensus 130 Np~-~Q~~vl~~-g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d----~kl~~k 203 (392)
+|. +|+.|+.. +|++.|+.+|.. ..+.+|..|+..|..++++++..++.+.-.||++.|..++..+. ..+..+
T Consensus 153 r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D 231 (651)
T 3grl_A 153 LGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVED 231 (651)
T ss_dssp SHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred CcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence 998 99999976 999999999886 47899999999999999999988888888999999999998754 488899
Q ss_pred HHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChH------H-H--HHHHHHHHHHHcCC
Q 016280 204 ALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPD------V-R--EAALRGLLELAREK 257 (392)
Q Consensus 204 A~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~------v-~--E~aL~aL~~L~~~~ 257 (392)
++.+|.+|++.++.++..|.+.|.++.|..+|..++.. . . -.++.++.-++..+
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999854321 1 1 22555666666654
No 40
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.18 E-value=8e-11 Score=126.10 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=134.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC-cccH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN-KPGI 177 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~-~~~~ 177 (392)
..+.|++..|+|+++..|..||++|+++++ ++..+..+++.|++.+++.-+..|++.+||..|++||.+|+.+. ....
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 357788899999999999999999999998 68888999999999998877667789999999999999998764 4455
Q ss_pred HHHHHcChHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc
Q 016280 178 EAFRLANGYAALRDALGSES---------------------VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS 236 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~d---------------------~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~ 236 (392)
..++..|+++.|..++.+.. ..+...++.+|.+|+..+......+...+.++.|+.+|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 66778999999998875321 123345778899999776666778888899999999875
Q ss_pred CC---ChHHHHHHHHHHHHHHcCCChhhh
Q 016280 237 SE---DPDVREAALRGLLELAREKADGSA 262 (392)
Q Consensus 237 ~~---d~~v~E~aL~aL~~L~~~~~~~~~ 262 (392)
+. ..+++..|+.+|..++.+++.+..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~ 221 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQ 221 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHH
Confidence 32 367999999999999999986544
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.03 E-value=1.8e-09 Score=113.70 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=153.6
Q ss_pred CHHHHHHHHHHHHHhhcCCC--ChHHHHHc-CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESID--MANDLHSI-GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iD--nA~d~~~l-Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll 147 (392)
+...+..++..|.-++.+-. +-..+... +|++.|+.+|.++...||..|.-+|..++.+|+.+|+.|.-.|++++|+
T Consensus 135 df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf 214 (651)
T 3grl_A 135 DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL 214 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence 44556677777777776543 34556644 9999999999999999999999999999999999999888889999999
Q ss_pred HhhCCCC---CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCH-------HHHH--HHHHHHHHHhhcC
Q 016280 148 SNFASDP---DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESV-------KFQR--KALNLIQYLLNEN 215 (392)
Q Consensus 148 ~LL~s~~---~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~-------kl~~--kA~~lLs~L~~~~ 215 (392)
.++..+. .-.+...++..|.+++|+|+.++..|.+.|+++.|..+|..++. ++.- -+..+++-|+..+
T Consensus 215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988643 23677899999999999999999999999999999999986432 2222 2556677776543
Q ss_pred C------cchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCC
Q 016280 216 A------SDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELAREKA 258 (392)
Q Consensus 216 ~------~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~ 258 (392)
. .++..+.+.|+++.|+.++.+. ...++..|+.++..+.++++
T Consensus 295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~ 345 (651)
T 3grl_A 295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ 345 (651)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence 2 3466889999999999998865 56899999999999999997
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.01 E-value=8e-09 Score=92.93 Aligned_cols=118 Identities=24% Similarity=0.229 Sum_probs=53.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
+.|+.+|.++++.+|..|+++|+.+.. .++++.|+.+|.+ +++.+|..|+++|+.+..
T Consensus 53 ~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~---------- 110 (211)
T 3ltm_A 53 EPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD---------- 110 (211)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------
Confidence 444444444455555555555544431 1234444444332 344455555555544321
Q ss_pred HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
...++.|+.+|.+++..+|..|+++|..+-. ...++.|..++.+++..+|..++.+|..+
T Consensus 111 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 111 -ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1234444555554555555555555544421 12344445555555555555555555544
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.98 E-value=1.1e-08 Score=91.33 Aligned_cols=119 Identities=22% Similarity=0.188 Sum_probs=59.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.+.++.+|+++++.+|..|+++|+.+.. ..+++.|+.+|. +++..+|..|+++|+.+..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC---------
Confidence 4555555555555555555555554432 123455555543 2345555555555554421
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
..+++.|+.+|.+++..+|..|+++|..+.. ...++.|+.+|.+++..+|..|+.+|..+
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1344555555555555555555555554421 12344455555555555555555555554
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.95 E-value=4.4e-08 Score=87.37 Aligned_cols=139 Identities=21% Similarity=0.163 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
++..+..++..|..+-. -+.++.|+.+|.++++.+|..|+++|+.+.. ..+++.|+.+|
T Consensus 27 ~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l 85 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKAL 85 (201)
T ss_dssp CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHH
Confidence 44566677777765432 2568999999999999999999999998753 14678888887
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
.+ +++.+|..|+++|+.+.. ...++.|..+|.+++..+|..|+++|..+-. ...++.
T Consensus 86 ~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~ 142 (201)
T 3ltj_A 86 KD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEP 142 (201)
T ss_dssp TC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHH
T ss_pred cC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHH
Confidence 65 689999999999998742 2478889999999999999999999998842 346788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHH
Q 016280 231 MLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
|+.++.+++..+|..|+.+|..+
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.91 E-value=2.8e-08 Score=93.24 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
++..+..++..|..+-. -+.++.|+.+|.++++.+|..|+++|+.+......+.. .++.|...+
T Consensus 36 ~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~------l~~~L~~~~ 99 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMA 99 (280)
T ss_dssp SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH------HHHHHHHHH
Confidence 44566677777776541 23578888999999999999999999988643221111 223333333
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
.++++..||..|+++|+.+..+++... ...++.|..++.+++..+|..|+++|..+.. .+.++.
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~ 163 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL 163 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence 456788999999999999876554322 2357888888999999999999999887643 247888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 231 MLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
|+.++.+++..+|..|+.+|..+..+.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccCc
Confidence 999999999999999999998885443
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.88 E-value=9.9e-08 Score=85.72 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=94.2
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
+.++.|+.+|.++++.+|..|+++|+.+.. ..+++.|+.++. +++..||..|+++|+.+- .
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~--~----- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIG--D----- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC--C-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHcC--C-----
Confidence 367888888888889999999999988753 246777888764 467889999999998873 1
Q ss_pred HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
...++.|..++.+++..+|..|+.+|..+-. ..+++.|..++.+++..+|..|+.+|..+...+.
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 2467788888888888899999888888732 2356778888888888899999998888766553
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.86 E-value=6.3e-08 Score=90.85 Aligned_cols=196 Identities=12% Similarity=0.042 Sum_probs=132.0
Q ss_pred HHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 96 HSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 96 ~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
.+-+.++.|+.+|.++++.+|..|+++|+.+. .+ .+++.|+.++.+ ++..+|..|+++|+.+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCCTT-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC--Cc---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccccc-
Confidence 34578999999999999999999999999986 22 357788888775 588999999999998753322
Q ss_pred cHHHHHHcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 176 GIEAFRLANGYAALR-DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
... ..++.|. .++.+++..+|..|+++|..+...++... ..+++.|+.++.+++..+|..|+.+|+.+.
T Consensus 87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 111 1344555 35678899999999999999985443222 245788999999999999999999999876
Q ss_pred cCCC-hhhhhhhhhhHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280 255 REKA-DGSAIKLAEDNEKLKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 255 ~~~~-~~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
.... .....++.++...++...-..+..+...+ -+.+..|......+...+|..++++|-
T Consensus 157 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 DKATIPLLINLLKDPNGDVRNWAAFAININKYDN----------SDIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp --CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC----------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc----------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5322 22223334555555554444444443111 133445555555555566666666553
No 48
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.82 E-value=1.3e-08 Score=108.90 Aligned_cols=184 Identities=14% Similarity=0.027 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLL 147 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll 147 (392)
.+++++..|+..|.+++++-.+..-+.+.|++.+++ .+|.+++.+||..|+++|++++.. .+.+...++..|++++|+
T Consensus 46 ~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~ 125 (684)
T 4gmo_A 46 PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIE 125 (684)
T ss_dssp SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHH
Confidence 467889999999999999877888899999999876 578899999999999999999986 578888899999999999
Q ss_pred HhhCCC-------------CC-------HHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC---CCHHHHHHH
Q 016280 148 SNFASD-------------PD-------VTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---ESVKFQRKA 204 (392)
Q Consensus 148 ~LL~s~-------------~~-------~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s---~d~kl~~kA 204 (392)
.++.+. .. ..+...++++|.+++.+...+...+...++++.|+.+|.+ ....++..|
T Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a 205 (684)
T 4gmo_A 126 HAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEA 205 (684)
T ss_dssp HHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHH
Confidence 887531 01 1234467888999998888888888899999999998854 347899999
Q ss_pred HHHHHHHhhcCCcchHHHHhcCchHH---HHHhhcCCChHHHHHHHHHHHHHH
Q 016280 205 LNLIQYLLNENASDCSVVDKLGFPRL---MLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 205 ~~lLs~L~~~~~~~~~~l~~~G~v~~---Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
+.+|+.|+.+++...+.+.+.|.... +..+.++ +...+..+..+|.++.
T Consensus 206 ~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 206 ISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 99999999988888888887775432 3333333 3344566777777763
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.65 E-value=9.2e-07 Score=81.58 Aligned_cols=176 Identities=14% Similarity=0.186 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHHhhcCC-CC-hHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH
Q 016280 70 VTPQDIEDMLDELQEHVESI-DM-ANDLHSIGGLAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP 145 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~i-Dn-A~d~~~lGgl~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~ 145 (392)
.+-.++..++..|..+++.. +. ..++.++ ++.|..+|. .++..+|..|+.+|+.++..- +.+...+- ..++.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i--~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~ 102 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGAL--VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPS 102 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHH
Confidence 45678888999999888752 21 2223222 666778884 899999999999999999641 12222221 36888
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-Ccc-hHHHH
Q 016280 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNEN-ASD-CSVVD 223 (392)
Q Consensus 146 Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~-~~~-~~~l~ 223 (392)
|+..+.. ++..||..|..||..++.... .. .-++.|...|++++.++|..++.+|..++... +.. .....
T Consensus 103 ll~~l~d-~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 103 LLEKFKE-KKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHGGGC-CCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9988765 678999999999999987643 22 24667888899999999999999999977543 221 11122
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
..+++.|+.+|.+.+..+|..|..+|+.++..-.
T Consensus 175 -~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 175 -KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp -HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 2578999999999999999999999999886554
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.59 E-value=1e-06 Score=92.31 Aligned_cols=176 Identities=17% Similarity=0.200 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
+..+..|+..|..+. ..+.+..+ ++.+..+|.++++.||..|+++++.+...+|.. +-+.+.++.|..+|.
T Consensus 100 ~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~ 170 (591)
T 2vgl_B 100 PLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA 170 (591)
T ss_dssp HHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC
Confidence 344455666665543 23334443 466889999999999999999999999988753 223467888888876
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCccc---------HHHHHH----------------------------cChHHHHHHhhc
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPG---------IEAFRL----------------------------ANGYAALRDALG 194 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~---------~~~f~~----------------------------~gGl~~L~~lL~ 194 (392)
|+++.|+..|+.+|+.++.+.+.. ...++. ...++.+..+++
T Consensus 171 -d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 171 -DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS 249 (591)
T ss_dssp -CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC
T ss_pred -CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc
Confidence 578999999999999999876532 111111 134556666778
Q ss_pred CCCHHHHHHHHHHHHHHhhc---CCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 195 SESVKFQRKALNLIQYLLNE---NASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 195 s~d~kl~~kA~~lLs~L~~~---~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
+.+..++..|++++.++... +++....+ -..+.+.|+.++. ++.++|..|+++|..++...+.
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~ 315 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE 315 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH
Confidence 88899999999999998742 23333322 2345677776664 7899999999999999876553
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.58 E-value=3.6e-06 Score=88.15 Aligned_cols=166 Identities=13% Similarity=0.188 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
.+.+..++..+..+.-.-... ..++..+++++.+++..+|..+...+..++..+|.... -++..|.+-|.
T Consensus 27 ~~~k~~~~~kli~~~~~G~d~-----~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~ 96 (591)
T 2vgl_B 27 KEKRKEAVKKVIAAMTVGKDV-----SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCE 96 (591)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-----GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcC
Confidence 345555555555443322221 22577888999999999999999999999887765422 24566776666
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHH
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLM 231 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~L 231 (392)
+ +++.+|..|+.+|+++. .+..... -++.+..++.++++.+|.+|+.++..+...+++ .+.+.++++.+
T Consensus 97 ~-~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l 165 (591)
T 2vgl_B 97 D-PNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSL 165 (591)
T ss_dssp S-SSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHH
Confidence 5 68999999999999985 2322222 356789999999999999999999999986655 34456889999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 232 LHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 232 v~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
..+|.++++.|+..|+.+|..++.+.+
T Consensus 166 ~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 166 RDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999876
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.49 E-value=2.7e-06 Score=92.18 Aligned_cols=246 Identities=15% Similarity=0.091 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHH-------cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHS-------IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGL 143 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~-------lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l 143 (392)
+...++.++..|..+++..... +.. -..++.++.++.++++.+|..|+++++.++...+..-...+ ...+
T Consensus 141 ~~~~r~~al~~L~~i~~~~~~~--~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l 217 (852)
T 4fdd_A 141 DYNTCEGAFGALQKICEDSAEI--LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFI 217 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTH--HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHH--hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHH
Confidence 4567888999999988865332 221 12366777888899999999999999998876553211111 1356
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 016280 144 EPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD 223 (392)
Q Consensus 144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~ 223 (392)
+.|+.++. +++..+|..|+++|..++..++...... -.+-++.+..++.+.+..++..|+.++..++... ..+..+.
T Consensus 218 ~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~ 294 (852)
T 4fdd_A 218 ENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLV 294 (852)
T ss_dssp HHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHH
Confidence 77777755 4688999999999999998765432222 2246788888899999999999999999998542 2222121
Q ss_pred hc--CchHHHHHhh-----------cC-----------CChHHHHHHHHHHHHHHcCCChhhh--------hhhhhhHHH
Q 016280 224 KL--GFPRLMLHLA-----------SS-----------EDPDVREAALRGLLELAREKADGSA--------IKLAEDNEK 271 (392)
Q Consensus 224 ~~--G~v~~Lv~LL-----------~~-----------~d~~v~E~aL~aL~~L~~~~~~~~~--------~~~~~~~~~ 271 (392)
.. .+++.++..+ .+ .+..+|..+..+|..++...+..+. ..+.++...
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~ 374 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 374 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHH
Confidence 11 3455555555 22 1234688888888888765442111 111112222
Q ss_pred HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280 272 LKQLLGERIKGISLMSPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 272 L~~~L~~~~~~i~~~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
.|...-..+..|.....+.+..+.+ +++..|+..+-.....+|..++|+|.
T Consensus 375 ~R~aa~~alg~i~~~~~~~~~~~l~--~~l~~l~~~l~d~~~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 375 VKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSDKKALVRSITCWTLS 425 (852)
T ss_dssp HHHHHHHHHHHTTTTTHHHHGGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2222222233333333332222222 34666666655555667887887764
No 53
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.47 E-value=3.8e-07 Score=98.97 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHc---CChHHHHHhh-----------cC-----------CCHHHHHHHHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSI---GGLAPLLGYL-----------KN-----------SHANIRAKAGEVVTT 125 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l---Ggl~~Ll~lL-----------~s-----------~~~~IR~~Aa~vLg~ 125 (392)
+++-+..+++.+..+++..... .+.+- ..++.++..+ .. .+-.+|..|+.+|+.
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 4566788888888888754322 22211 2245555555 22 122479999999999
Q ss_pred HhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHH
Q 016280 126 IVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKAL 205 (392)
Q Consensus 126 iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~ 205 (392)
++...+. .++. ..++.|..++.+ ++..+|..|++||++++.+....... .....++.|..++.+++..+|..|+
T Consensus 348 la~~~~~---~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~ 421 (852)
T 4fdd_A 348 LANVYRD---ELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITC 421 (852)
T ss_dssp HHHHHGG---GGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhccH---HHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9976542 2332 245666666665 57899999999999999876543222 2356789999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 206 NLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 206 ~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
|++..++...........-.++++.|+..+.+++..+|+.|+.+|.+++.....
T Consensus 422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 999999864221111111225778888888888999999999999999876553
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.47 E-value=1.3e-08 Score=85.64 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=90.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
..++.++.+|+++++.+|..|+++|+.+... .++.|+.+|.+ ++..||..|+++|+.+-.
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS-------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC-------
Confidence 4577888999999999999999999876421 36788888774 789999999999998742
Q ss_pred HHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 016280 179 AFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLE 252 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~ 252 (392)
...++.|..+|.+++..+|..|+++|..+.. ...++.|+.++++++..++..|+.+|.+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357889999999999999999999998752 2357889999999999999999988864
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.9e-06 Score=80.88 Aligned_cols=183 Identities=14% Similarity=0.167 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHH-hhcC---CCC-hHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCC--HHHH-HHHHHc
Q 016280 70 VTPQDIEDMLDELQE-HVES---IDM-ANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNN--PRSQ-QLVMEA 140 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~-lve~---iDn-A~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNN--p~~Q-~~vl~~ 140 (392)
....++..+++.|.. +++. +.. ..++.++ +..|...| +.++..+|..|+.+|+.++..- +.++ ....
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~--~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-- 103 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL--LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-- 103 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence 356788889999999 8853 211 2223233 66777888 7899999999999999999632 3333 3222
Q ss_pred CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchH
Q 016280 141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCS 220 (392)
Q Consensus 141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~ 220 (392)
-.++.++..+.. ....|+..+..|+-+++.+..+......-..-++.|...|++++..+|..++.+|..++...+....
T Consensus 104 ~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 104 LVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 258899998764 5789999999999999986533110000112566788889999999999999999999976554212
Q ss_pred HH---HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 221 VV---DKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 221 ~l---~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+ +.-.+++.|..++.+.+..+|+.|..+|..++..-
T Consensus 183 ~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 22 22478999999999999999999999999887544
No 56
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.5e-06 Score=82.17 Aligned_cols=236 Identities=16% Similarity=0.183 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHh--hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGY--LKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPL 146 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~l--L~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~L 146 (392)
+.+.++.+|+.|.++.++|..--.+.... +..|-.+ ..+..+.+|+.|+.+||.+-+|||.+-+.|.+. ..+..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 34678899999999999999998888753 5555444 355788999999999999999999999988876 233333
Q ss_pred HHhhC----C--CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC--CHHHHHHHHHHHHHHhhc---C
Q 016280 147 LSNFA----S--DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE--SVKFQRKALNLIQYLLNE---N 215 (392)
Q Consensus 147 l~LL~----s--~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~--d~kl~~kA~~lLs~L~~~---~ 215 (392)
..-|. . .....+++.-+++|..|+.+. ..| ...|+..|..++... +..+|+|++.+++.+... .
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~~~~~ 194 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKADMYE 194 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccccccc
Confidence 32222 1 134567777899999999874 234 366888888888777 899999999999998741 1
Q ss_pred C------cchHHHHh-----cCchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhh
Q 016280 216 A------SDCSVVDK-----LGFPRLMLHLASSED--PDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKG 282 (392)
Q Consensus 216 ~------~~~~~l~~-----~G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~ 282 (392)
. ..+.-+.+ .++...+-.++++.. ..-...--..|.+|.+.....+.-- ..-+.=|-+..+.|.+.
T Consensus 195 ~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~~~~lK~~-~~FLnWLa~E~e~Rk~~ 273 (315)
T 3qml_C 195 NDDTNLILFKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIFKSDITIN-KGFLNWLAQQCKARQSN 273 (315)
T ss_dssp -------------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHGGGSCCC-HHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHHHHhh
Confidence 1 11111111 124455666666433 2233444567778877552111000 12223333444455555
Q ss_pred hcC----CChhhHHHHHHHHHHHHHHHHHHhCCCccccc
Q 016280 283 ISL----MSPEDLGAAREERHLVDSLWNACYNEPSSLRD 317 (392)
Q Consensus 283 i~~----~~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~ 317 (392)
++. .+.+| ...++ .+++. .+..||+|-..|=
T Consensus 274 ~~~~~~~rd~eq--~~FD~-~li~s-RH~VFGNPma~R~ 308 (315)
T 3qml_C 274 LDNGLQERDTEQ--DSFDK-KLIDS-RHLIFGNPMAHRI 308 (315)
T ss_dssp HTSCCSCCCHHH--HHHHH-HHHHH-HTTTC--------
T ss_pred hccccccCChHH--HHHHH-HHHHH-HHHHcCCchhhhh
Confidence 433 33333 12222 22333 5689999998883
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.32 E-value=1.2e-05 Score=82.04 Aligned_cols=175 Identities=18% Similarity=0.112 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+.+.+..+.+.|..+++.+.... +....++.|..++.+++..+|..|+.+|+.++...+.-+ +....++.+..+.
T Consensus 61 ~~~vr~~~~~~L~~~~~~~~~~~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~---~~~~l~~~l~~l~ 135 (588)
T 1b3u_A 61 EDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD---LEAHFVPLVKRLA 135 (588)
T ss_dssp CHHHHHHHHHHHTTCSGGGTSGG--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH---HHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCcHH--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHh
Confidence 44556677777776665432221 112235666677788999999999999999999876421 2222344444554
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
. +.+..+|..|+..++.++.+.... ....-++.+..++.+++..+|..|+.+|..++...+.. .....+++.
T Consensus 136 ~-~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~ 207 (588)
T 1b3u_A 136 G-GDWFTSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPM 207 (588)
T ss_dssp T-CSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHH
T ss_pred c-CCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHH
Confidence 4 457889999999999988765532 23445777888888899999999999999998653321 223467888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 231 MLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+..++.+++..+|..|+.+|..++...+
T Consensus 208 l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 208 FSNLASDEQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHTCSCHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999887654
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.30 E-value=1.9e-05 Score=80.51 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+..-+..+.+.|..+++.... ..+ .--.++.+..+..+++..+|..|+.+++.++...+.. . ....++.|..++
T Consensus 100 ~~~vR~~a~~~L~~l~~~~~~-~~~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~-~~~l~~~l~~l~ 173 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHEHSP-SDL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V-KAELRQYFRNLC 173 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTSCH-HHH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCH-HHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHh
Confidence 456677888888888876542 111 1122444445666777788888888888877654321 1 122345555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHH
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRL 230 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~ 230 (392)
. ++++.||..|+.+|+.+++..+.. .....-++.|..++.+++..+|..|+.+|..++...+.. .....+++.
T Consensus 174 ~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~ 246 (588)
T 1b3u_A 174 S-DDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPT 246 (588)
T ss_dssp T-CSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHH
Confidence 3 457778888888888877654321 123445666677777777777777777777666432211 111234455
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 231 MLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 231 Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
+..++.+++..+|..++.+|+.++.
T Consensus 247 l~~~~~d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 247 LRQAAEDKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHTHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHH
Confidence 5555555555566666666555554
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.23 E-value=4.2e-06 Score=82.66 Aligned_cols=184 Identities=8% Similarity=0.029 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHH--------------
Q 016280 71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQ-------------- 135 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~-------------- 135 (392)
+.+.+..+++.|..+++..... .....-+.++.++..+++.+..+|..|++.+++++........
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence 4556667777777777643110 0111014466677888899999999999999999875311100
Q ss_pred ---HHHH---cCCHHHHHHhhCCC------CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHH
Q 016280 136 ---LVME---ANGLEPLLSNFASD------PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRK 203 (392)
Q Consensus 136 ---~vl~---~g~l~~Ll~LL~s~------~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~k 203 (392)
.+++ ...+|.|+..+... .+..+|..|..+|+.++...+. .+ ....++.+...+.+.+.++|..
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~-~~~~~~~l~~~l~~~~~~~r~a 385 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DI-VPHVLPFIKEHIKNPDWRYRDA 385 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---TH-HHHHHHHHHHHTTCSSHHHHHH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HH-HHHHHHHHHHHhcCCChHHHHH
Confidence 0111 22466677666431 2347899999999999887652 22 2356788888999999999999
Q ss_pred HHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 204 ALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 204 A~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
|+++|..++.+.... ..... ..+++.++.+|.++++.+|..|+.+|++++.....
T Consensus 386 al~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999753311 11111 46889999999999999999999999999886643
No 60
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.23 E-value=5.6e-05 Score=73.92 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHH-hhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 016280 47 VIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQE-HVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTT 125 (392)
Q Consensus 47 ~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~-lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~ 125 (392)
.-.+-.++++.+. + .+.+++.++|-.|.. +-++.+.|..|++.+|+..|+......+.+++.++..+++.
T Consensus 116 ps~ra~~iiekL~-------~--~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~ 186 (339)
T 3dad_A 116 LSVRVNAILEKLY-------S--SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQ 186 (339)
T ss_dssp HHHHHHHHHHHHH-------H--CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-------c--CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3345555555443 2 246788899999999 55789999999999999999999999999999999999999
Q ss_pred HhhCCHHHHHHHHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH-------cCh---HHHHHHhhc
Q 016280 126 IVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL-------ANG---YAALRDALG 194 (392)
Q Consensus 126 iaqNNp~~Q~~vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-------~gG---l~~L~~lL~ 194 (392)
+.-...-. +.|++ ...|..|..++.+ .+..|-+.|+.-|-++|-..+.+...+.. ..| ++.|+.+|+
T Consensus 187 LM~~v~Gm-~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 187 LMLFVDGM-LGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HTTSHHHH-HHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred HHhccccc-cchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 99764433 33443 3567888888875 67888888888888888766544443332 223 889999998
Q ss_pred ---CCCHHHHHHHHHHHHHHhhcCCcch------HHHHhcCchHHHHHhhcCC--ChHHHHH
Q 016280 195 ---SESVKFQRKALNLIQYLLNENASDC------SVVDKLGFPRLMLHLASSE--DPDVREA 245 (392)
Q Consensus 195 ---s~d~kl~~kA~~lLs~L~~~~~~~~------~~l~~~G~v~~Lv~LL~~~--d~~v~E~ 245 (392)
+.|..++..|..+|..++..-+... ..+.+.|+-..+..+++.. +++++++
T Consensus 265 ~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 265 EKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 6789999999999999997755422 3445567666666666643 5555443
No 61
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.14 E-value=3.8e-05 Score=70.59 Aligned_cols=146 Identities=10% Similarity=0.131 Sum_probs=111.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH
Q 016280 103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL 182 (392)
Q Consensus 103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~ 182 (392)
.+...+.+.+-..|..|+..|+.++..++.....-+ ...++.|..++..+.+..|+..|+.+|+.++++..+....+ .
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-A 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-H
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-H
Confidence 477888999999999999999999987543211000 12356667776545789999999999999997654433333 3
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
..-++.|...+.+++..+|..|+.+|..++...+ .. .+++.+...|.+.++.+|+.++..|..+....
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 4478899999999999999999999999986432 11 35778888899999999999999999976554
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.14 E-value=1.8e-05 Score=84.83 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=109.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH-H-HHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccH-
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNP-R-SQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGI- 177 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp-~-~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~- 177 (392)
++.+...|.+++..+|..|++++|.++.... . ... .+ ...++.|+..+.. ++..||..|+++|+.++...+...
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~-~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LV-IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcc
Confidence 4445567788999999999999999998753 3 332 23 2468888888754 678999999999999998765421
Q ss_pred -HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC--------------c-chHHHHhcCchHHHHHhhcCC---
Q 016280 178 -EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA--------------S-DCSVVDKLGFPRLMLHLASSE--- 238 (392)
Q Consensus 178 -~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~--------------~-~~~~l~~~G~v~~Lv~LL~~~--- 238 (392)
..+ ....++.|...|.+. .+++..|+++|.+++.... . ....+ ..+++.|+.++...
T Consensus 445 ~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred cHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 111 235677788888774 9999999999999986421 0 01111 24667777777654
Q ss_pred ChHHHHHHHHHHHHHHcCCCh
Q 016280 239 DPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 239 d~~v~E~aL~aL~~L~~~~~~ 259 (392)
+..++..++.+|..++.....
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCS
T ss_pred hhhHHHHHHHHHHHHHHHCch
Confidence 457999999999999887653
No 63
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.12 E-value=2.4e-05 Score=82.46 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=87.1
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC--------------CCCHHHHHHHHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS--------------DPDVTVRTKALGAI 166 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s--------------~~~~~vr~kAl~AL 166 (392)
++.+..+|...++.|+..|+++++.++.++|.....+. ..++.|+.+|.+ ..++..+.+++.+|
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 44445566666677777777777777766665322222 457777776542 24788899999999
Q ss_pred HHhhcCCcccHHH---HH----------------------------------HcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 016280 167 SSLIRHNKPGIEA---FR----------------------------------LANGYAALRDALGSESVKFQRKALNLIQ 209 (392)
Q Consensus 167 S~lvR~~~~~~~~---f~----------------------------------~~gGl~~L~~lL~s~d~kl~~kA~~lLs 209 (392)
+.++++.+..... ++ ...++..|..++.+++..+|.-|+..|.
T Consensus 259 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~ 338 (618)
T 1w63_A 259 RILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLL 338 (618)
T ss_dssp HHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9888765432111 00 0124566667777777777777777777
Q ss_pred HHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 210 YLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 210 ~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.++..++.. +. .....++.++.+++..+|..|+.+|..++...
T Consensus 339 ~i~~~~p~~---~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 339 KTVQTDHNA---VQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHH---HG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred HHHhhCHHH---HH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 776543221 11 12334455555555555555555555555543
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.11 E-value=0.00016 Score=67.46 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHH-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHS-IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~-lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
.+..-+.++|..|++++...|-.-.... -..++.++.++.+.+..|--.|..||+++..+.|-.-+.+.+ .+..|..
T Consensus 45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~d 122 (265)
T 3b2a_A 45 DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVS 122 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHH
Confidence 3556678999999999998765544443 357999999999999999999999999999999877676665 3566777
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 149 NFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
++. ..+.-++..|+-.++.+ +--.. ...-+..|.+++.|++.++|.-+..++.+++... .+... -.+++
T Consensus 123 lik-~~~~il~~eaae~Lgkl-kv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-~D~~i--~~~I~ 191 (265)
T 3b2a_A 123 LLE-SPDDMMRIETIDVLSKL-QPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-ADSGH--LTLIL 191 (265)
T ss_dssp HTT-SCCHHHHHHHHHHHHHC-CBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-SSCCC--GGGTT
T ss_pred Hhc-CCCchHHHHHHHHhCcC-Ccccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-CCHHH--HHHHH
Confidence 766 46888999999999998 22111 1235678899999999999999999999998532 22211 12456
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.-+-.+|+++|+.+++.|+.+|..+.+-.-
T Consensus 192 ~eI~elL~~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 192 DEIPSLLQNDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp TTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence 667889999999999999999999987653
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.10 E-value=2.7e-05 Score=83.27 Aligned_cols=178 Identities=15% Similarity=0.080 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhC
Q 016280 73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFA 151 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~ 151 (392)
.-+..+.+.|..++.... ..+.. ..++.+...|.+++..+|..|++++|.++... +..-...+. ..++.|+..+.
T Consensus 346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~ 421 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence 445566666666655332 11111 12455556778889999999999999999764 222122233 36788888765
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcccH--HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC----cch-HHHHh
Q 016280 152 SDPDVTVRTKALGAISSLIRHNKPGI--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA----SDC-SVVDK 224 (392)
Q Consensus 152 s~~~~~vr~kAl~ALS~lvR~~~~~~--~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~----~~~-~~l~~ 224 (392)
. +++.+|..++|+|+.++....... ..+ ...-++.|...++++ .+++..|++++..++.... ... ..+
T Consensus 422 d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-- 496 (861)
T 2bpt_A 422 D-QSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-- 496 (861)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--
T ss_pred C-CcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--
Confidence 4 688999999999999987533210 111 234577888888776 9999999999999986422 111 111
Q ss_pred cCchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCCh
Q 016280 225 LGFPRLMLHLASSED--PDVREAALRGLLELAREKAD 259 (392)
Q Consensus 225 ~G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~ 259 (392)
..+++.|+.++.+.+ ..+|..++.+|..++...+.
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 245777888887544 78999999999999887664
No 66
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.06 E-value=2.2e-05 Score=77.47 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=109.5
Q ss_pred ChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCC-CHHHHHHHHHHHHHhhcCCcc
Q 016280 100 GLAPLLGYLKNS--HANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDP-DVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 100 gl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~-~~~vr~kAl~ALS~lvR~~~~ 175 (392)
.++.|+.++.++ ++.+|..|+.+++.++... +..-...+. ..++.++..+..+. +..||..|+.++++++.....
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345667788887 8999999999999999754 322111222 35677888877653 789999999999997643221
Q ss_pred cH--HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 176 GI--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 176 ~~--~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
.. ..+ ..--++.|..++.+.+..+|..++.+|..++...+.........++++.++..+++.+..++..++.++..+
T Consensus 208 ~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 208 NFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 11 111 111356677778888999999999999999976544322122226677788888899999999999999888
Q ss_pred HcC
Q 016280 254 ARE 256 (392)
Q Consensus 254 ~~~ 256 (392)
+..
T Consensus 287 ~~~ 289 (462)
T 1ibr_B 287 CDE 289 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.01 E-value=0.0003 Score=74.37 Aligned_cols=169 Identities=14% Similarity=0.061 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
.+..++..++..|..+.-.-... .-|+..+++++.+++..+|..+.-.+..++..++..--. ++..+.+=
T Consensus 50 ~~~~~k~~~l~Kli~l~~~G~d~-----s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kD 119 (621)
T 2vgl_A 50 LDGYSKKKYVCKLLFIFLLGHDI-----DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKND 119 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCC-----CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCC-----chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHh
Confidence 46677777777776654422211 247888999999999999999999999999988854322 23344444
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGF 227 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL--~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~ 227 (392)
+.+ +++.+|.-|+.+||++.. +. + ...-++.+.++| .+.++.||.+|+.++..+...+++.. ...++
T Consensus 120 l~~-~n~~ir~lALr~L~~i~~--~e----~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~ 188 (621)
T 2vgl_A 120 LAS-RNPTFMGLALHCIANVGS--RE----M-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDW 188 (621)
T ss_dssp HHS-CCHHHHHHHHHHHHHHCC--HH----H-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSC
T ss_pred cCC-CCHHHHHHHHHHhhccCC--HH----H-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhH
Confidence 443 689999999999999842 21 2 234567788888 78899999999999999998665433 23589
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 228 PRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
++.+..+|.+.|+.++..|+.+|..++.+++.
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999999988764
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.99 E-value=5.8e-06 Score=69.22 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=72.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
++.|+.+|+++++.+|..|+++||.+.. + .+++.|+.+|. +++..||..|+++|+.+-
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~---------- 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLE-DDSGFVRSGAARSLEQIG---------- 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHH-HCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhC----------
Confidence 7889999999999999999999998863 2 24778888875 468899999999999874
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQY 210 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~ 210 (392)
...+++.|..++++++..++..|+++|..
T Consensus 102 -~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 -GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 12468889999999999999999988754
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.98 E-value=0.00015 Score=81.52 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCh-HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 71 TPQDIEDMLDELQEHVESIDMA-NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA-~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+.+.+..|++.|...+..--.. ..-..-..++.++..|.+++..+|..|+.+|+.++...+.- .+. ..++.|+..
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~-~i~~~Ll~~ 94 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVE-TIVDTLCTN 94 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHH-HHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHH-HHHHHHHHH
Confidence 5567777878777766431110 00011133677889999999999999999999999865541 111 246677877
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCccc-----HHHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHH
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPG-----IEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASDCSVVD 223 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~-----~~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~ 223 (392)
+.+ ++..+|..|..+|+.++....+. ........-++.|...+. +++.+++..|+.++..++...+......
T Consensus 95 l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~- 172 (1230)
T 1u6g_C 95 MLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF- 172 (1230)
T ss_dssp TTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-
T ss_pred hcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-
Confidence 665 45688999999999998776543 112223457888999998 5889999999999999986433321111
Q ss_pred hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 224 KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 224 ~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
-..+++.++.+|.+++..+|+.|+.+|..++....
T Consensus 173 ~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 173 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 13467778888889999999999999999987654
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.96 E-value=0.00034 Score=74.73 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHhhcCCCChH---HHHHcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHH-HHHHHHcCCHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMAN---DLHSIGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLE 144 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~---d~~~lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~-Q~~vl~~g~l~ 144 (392)
++..++.++..|..+++.++... .-+.-..++.++..|.++ +..||..|+.+++.++.--... .........++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 56778899999999998764220 001112356667778776 8999999999999986432111 00000011345
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-------
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS------- 217 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~------- 217 (392)
.|...+. +.+..+|..|+.+|..++..++......+...-++.+...+.+.+..++..|+.++..++.....
T Consensus 228 ~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 306 (861)
T 2bpt_A 228 VVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ 306 (861)
T ss_dssp HHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5555554 46889999999999999987665443333335677788888888999999999999998864210
Q ss_pred -------chHHHHh--cCchHHHHHhhcC-------CChHHHHHHHHHHHHHHcCCChhhh--------hhhhhhHHHHH
Q 016280 218 -------DCSVVDK--LGFPRLMLHLASS-------EDPDVREAALRGLLELAREKADGSA--------IKLAEDNEKLK 273 (392)
Q Consensus 218 -------~~~~l~~--~G~v~~Lv~LL~~-------~d~~v~E~aL~aL~~L~~~~~~~~~--------~~~~~~~~~L~ 273 (392)
....+.. ..+++.++..+.. ++..++..+..+|..++......+. ..+.+.....+
T Consensus 307 ~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r 386 (861)
T 2bpt_A 307 FPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp CTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHH
Confidence 0001111 2456777777764 2357888999999888875442111 00111111222
Q ss_pred HHHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHHhCCCccccccceeec
Q 016280 274 QLLGERIKGISLMS-PEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVL 323 (392)
Q Consensus 274 ~~L~~~~~~i~~~~-~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~ 323 (392)
...-..+..|.... .+.+..+.+ +++..|++.+......+|..++|+|
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l 435 (861)
T 2bpt_A 387 EAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCI 435 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 22222233333221 233333322 3456666666555566777777754
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.96 E-value=0.00025 Score=74.70 Aligned_cols=163 Identities=10% Similarity=-0.023 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC
Q 016280 73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
..+..++..|.++.-.-... .-|+..+++++.+++-.+|..+.-.+..++..++..--. ++..|.+-|.+
T Consensus 49 ~~k~~~l~kli~~~~~G~d~-----~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~ 118 (618)
T 1w63_A 49 TYRCRNVAKLLYMHMLGYPA-----HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNH 118 (618)
T ss_dssp TTHHHHHHHHHHHHHTTCCC-----GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCC-----cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCC
Confidence 44556666666654332211 236788889999999999999999999999888754222 34556666665
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 016280 153 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML 232 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv 232 (392)
+++.+|.-|+.+|+++.. + .+ ...-++.+.++|.+.++.+|.+|+.++..+...+++..+ ++++.+.
T Consensus 119 -~n~~vr~lAL~~L~~i~~--~----~~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~ 185 (618)
T 1w63_A 119 -STQFVQGLALCTLGCMGS--S----EM-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATK 185 (618)
T ss_dssp -SSSHHHHHHHHHHHHHCC--H----HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTT
T ss_pred -CCHhHHHHHHHHHHhcCC--H----HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHH
Confidence 678999999999999862 2 12 235678889999999999999999999999987665432 6888899
Q ss_pred HhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 233 HLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 233 ~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.+|.+.++.++..|+.+|..++.+++
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999988765
No 72
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.94 E-value=0.00047 Score=73.77 Aligned_cols=250 Identities=13% Similarity=0.094 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHH--cCChHHHHHhhcCC--CHHHHHHHHHHHHHHhhCCHHH-HHHHHHcCCHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHS--IGGLAPLLGYLKNS--HANIRAKAGEVVTTIVQNNPRS-QQLVMEANGLEP 145 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~--lGgl~~Ll~lL~s~--~~~IR~~Aa~vLg~iaqNNp~~-Q~~vl~~g~l~~ 145 (392)
++.-++.++..|..+++.++. ..|.. -..++.++.+|.++ +..+|..|+++++.++..-+.. .........++.
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~ 221 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV 221 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCH-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCH-hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456778899999988876531 11211 12356677788776 6899999999999988643311 111111124555
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc--------
Q 016280 146 LLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-------- 217 (392)
Q Consensus 146 Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-------- 217 (392)
+...+. +.+..+|..++.+|+.++..++.....++...-++.+...+.+.+..++..|+.++..++.....
T Consensus 222 l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 300 (876)
T 1qgr_A 222 VCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccc
Confidence 666554 46789999999999999987776555554447788888888888999999999999988753210
Q ss_pred ----------chHHHH--hcCchHHHHHhhc-------CCChHHHHHHHHHHHHHHcCCChhhh--------hhhhhhHH
Q 016280 218 ----------DCSVVD--KLGFPRLMLHLAS-------SEDPDVREAALRGLLELAREKADGSA--------IKLAEDNE 270 (392)
Q Consensus 218 ----------~~~~l~--~~G~v~~Lv~LL~-------~~d~~v~E~aL~aL~~L~~~~~~~~~--------~~~~~~~~ 270 (392)
....+. -..+++.++..+. +++..+|..|+.+|..++........ ..+.++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~ 380 (876)
T 1qgr_A 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW 380 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred cccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCCh
Confidence 000100 0234566666664 23457888888888888765542111 11111222
Q ss_pred HHHHHHHHHHhhhcCC-ChhhHHHHHHHHHHHHHHHHHHhCCCccccccceeecc
Q 016280 271 KLKQLLGERIKGISLM-SPEDLGAAREERHLVDSLWNACYNEPSSLRDKGLLVLP 324 (392)
Q Consensus 271 ~L~~~L~~~~~~i~~~-~~ed~~~~~ee~~~~~~L~~~~f~~~~~~~~~~~~~~~ 324 (392)
..|...-..+..+... ..+.+..+.. +++..|+..+-.....+|..++|+|.
T Consensus 381 ~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2222222223333322 1233332222 34555555554445567888888765
No 73
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.91 E-value=0.00039 Score=66.08 Aligned_cols=194 Identities=21% Similarity=0.193 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCC
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYL----KNSHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANG 142 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL----~s~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~ 142 (392)
+..++..+++.|.+.++. +...+ ..-+..+++.+ .+++..+-..+..+|..+.. .+....+.-. .-.
T Consensus 59 d~k~~~~ale~L~~~l~~--~~~~~--~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~ 133 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADT--SPRSL--LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF 133 (266)
T ss_dssp CHHHHHHHHHHHHHHHHH--CHHHH--HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHhhh--ChHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence 567778888888887764 22222 12233344433 36799999999998887753 2222212111 125
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVV 222 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l 222 (392)
+|.|+.-+. |+...+|.++-..+-.+..-+++. .-++.+...+.+++.+.|..++..+.+++......
T Consensus 134 lP~LveKlG-d~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 134 VPYLLLKTG-EAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 788888764 456789888877665555333321 23456778889999999999999999998654333
Q ss_pred HhcCch---HHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhh
Q 016280 223 DKLGFP---RLMLHLASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKG 282 (392)
Q Consensus 223 ~~~G~v---~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~ 282 (392)
....+ +.+..++.+.|..||+.|++++..+..+....+..++++--..-++.|.+|++.
T Consensus 202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 23467 999999999999999999999998877665545444444444456666666653
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.78 E-value=0.0046 Score=55.88 Aligned_cols=178 Identities=16% Similarity=0.199 Sum_probs=125.6
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCC
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYL-KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDP 154 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL-~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~ 154 (392)
..|+..+..+.+...-+-. -.+.-|+.+| +|..-.+-..-+..+|+++.-+|..-. +.+|.|..-+.-.
T Consensus 50 kNAl~vi~~i~~~~~el~e----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrig- 119 (253)
T 2db0_A 50 KNAISIIMVIAKTREDLYE----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIG- 119 (253)
T ss_dssp HHHHHHHHHHHTTCGGGHH----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCC-
T ss_pred HhHHHHHHHHHHHhHHHHH----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcC-
Confidence 4556666655554433211 0123334444 455666667778999999999996533 3577788776664
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L 234 (392)
++.+|.+-.|||.-+.|.+|.... +.+.-+..++.|+|..=|.-|+.+|+.+-..+. .. -.-++|.|..|
T Consensus 120 d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~---~y--v~PfLprL~aL 189 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF---KY--VNPFLPRIINL 189 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH---HH--HGGGHHHHHGG
T ss_pred CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc---cc--cCcchHHHHHH
Confidence 899999999999999999986443 345567788899997777777777777654321 11 13578999999
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcC
Q 016280 235 ASSEDPDVREAALRGLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISL 285 (392)
Q Consensus 235 L~~~d~~v~E~aL~aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~ 285 (392)
|.+.|.-||-.|..+|.++++-++ +|+..+...++....
T Consensus 190 L~D~deiVRaSaVEtL~~lA~~np------------klRkii~~kl~e~~D 228 (253)
T 2db0_A 190 LHDGDEIVRASAVEALVHLATLND------------KLRKVVIKRLEELND 228 (253)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSCH------------HHHHHHHHHHHHCCC
T ss_pred HcCcchhhhHHHHHHHHHHHHcCH------------HHHHHHHHHHHHhcC
Confidence 999999999999999999999884 346666666666654
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.78 E-value=0.0013 Score=61.47 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=119.8
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
.+..|+.+|...++.++.+|..+|+.+-..-|..-....=...++.++.++.+ .+..+..+|+-+|..++.+.|.....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 36778899999999999999999999988644333323333589999999765 68999999999999999999988888
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
|.. -...|..++.+++.-++..|+-.+..|- - .... -+++..+..|+.+.+..++..++++|.+++.-+.
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklk-v-~~~~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ-P-LEDS-----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCC-B-SCCC-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCC-c-ccch-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 854 4567788888999999999999998881 1 1111 2456778889999999999999999999988553
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00014 Score=68.17 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=111.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-HhhCCHHHHHHHHH-cCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc-ccHH-H
Q 016280 104 LLGYLKNSHANIRAKAGEVVTT-IVQNNPRSQQLVME-ANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK-PGIE-A 179 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~-iaqNNp~~Q~~vl~-~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~-~~~~-~ 179 (392)
+...+.+++-.-|..|...|+. ++.++|+....-.+ ...+..|...+..+.+..++..|+.||+.++++.. +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456789999999999999999 88666644210001 12355666777567889999999999999997665 4443 3
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+. .--++.|+..+.+....++..+..++..++..-+.....-.=..+++.|...|.+.++.+|+.++.+|..++....
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 32 2368888999998889999999999999986432110000001256788888999999999999999999987664
No 77
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0013 Score=61.71 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCC--h--HHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHH-----HHHHHHHc
Q 016280 71 TPQDIEDMLDELQEHVESIDM--A--NDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPR-----SQQLVMEA 140 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn--A--~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~-----~Q~~vl~~ 140 (392)
.-.++..+++.|..++..... . ..+...+.+..++ ..+..++..+...|+.+|..++..... ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 346788899999888875422 1 1222345555544 688899999999999999998864211 11111122
Q ss_pred CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc--
Q 016280 141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-- 218 (392)
Q Consensus 141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-- 218 (392)
..++.|+.-.-.+....++.+|+.++..++....+... .++.+...+.+++++++..++..|..++......
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 45777876423345788999999999888755433222 2466778889999999999999999988642111
Q ss_pred -hHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 219 -CSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 219 -~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
....+ ..+++.+..+|.+.+..||+.|..++..+...-
T Consensus 176 ~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 176 NVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp CHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred CchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 11111 134566778889999999999999999987654
No 78
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.48 E-value=0.00037 Score=78.41 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=109.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
+..++.-+.++++++|..|..-|.+..+.+......-.....++.|+..|. +++..+|..|+.+|+.++.+.+.. .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~--~- 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEY--Q- 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHH--H-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHH--H-
Confidence 556777788999999999999888877654210000001134667888876 478999999999999999876541 1
Q ss_pred HHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-----HHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHH
Q 016280 181 RLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-----SVVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELA 254 (392)
Q Consensus 181 ~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-----~~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~ 254 (392)
...-++.|...+.+++..+|..|+.+|..++..-.... ..-.-..+++.|...+. +++..+++.|+.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 23457778888888888999999999999986543320 11122357888888888 588999999999999998
Q ss_pred cCC
Q 016280 255 REK 257 (392)
Q Consensus 255 ~~~ 257 (392)
...
T Consensus 163 ~~~ 165 (1230)
T 1u6g_C 163 SRQ 165 (1230)
T ss_dssp HHT
T ss_pred HHh
Confidence 643
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.45 E-value=0.0027 Score=66.97 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 72 PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYL--KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 72 ~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL--~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
+-.+--||..|..+.. .+.+.++ ++.+..+| .+.++-||..|+.++..+.+.+|..- -..+.++.|..+
T Consensus 125 ~~ir~lALr~L~~i~~-~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~l 195 (621)
T 2vgl_A 125 PTFMGLALHCIANVGS-REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHL 195 (621)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHH
T ss_pred HHHHHHHHHHhhccCC-HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHH
Confidence 3445567777776543 2333333 67788899 88999999999999999999888442 224788889888
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
|. |.++.|+..|+.+|..++.+++.
T Consensus 196 L~-d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 196 LN-DQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp TT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred hC-CCCccHHHHHHHHHHHHHHhChH
Confidence 74 67899999999999999987654
No 80
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.43 E-value=0.013 Score=57.29 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=119.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
..++.-|.+++...+..|..-|..+.|..+..-..|++.+|+..|+..... .+-..+..++.|+.++.- +..+...++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchh
Confidence 345566667778888899999999776545454558999999999999866 478899999999999874 556676666
Q ss_pred H-cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--------C--chHHHHHhhc---CCChHHHHHHH
Q 016280 182 L-ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--------G--FPRLMLHLAS---SEDPDVREAAL 247 (392)
Q Consensus 182 ~-~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--------G--~v~~Lv~LL~---~~d~~v~E~aL 247 (392)
. ...+..|..++.+.+..+.+.|+.+|-.++...+.....+.+. | ....|+.+|. +.|..++.+|+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 4 4578889999999899999999999999997766555443322 2 4778999997 78999999998
Q ss_pred HHHHHHHcCCC
Q 016280 248 RGLLELAREKA 258 (392)
Q Consensus 248 ~aL~~L~~~~~ 258 (392)
..|-.+..+.+
T Consensus 279 tLIN~lL~~ap 289 (339)
T 3dad_A 279 TLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHhcCC
Confidence 77766655544
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.30 E-value=0.0097 Score=58.73 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=110.5
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHH
Q 016280 100 GLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEA 179 (392)
Q Consensus 100 gl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~ 179 (392)
.+..+++++.+++..+|....-.+-.++...+ +.++ ++..|.+=+.+ +++-+|..|+.+++++.-. . -.+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~---e~iL---v~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~-~-m~~- 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE---DVII---VTSSLTKDMTG-KEDSYRGPAVRALCQITDS-T-MLQ- 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS---CGGG---GHHHHHHHHHS-SCHHHHHHHHHHHHHHCCT-T-THH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH---HHHH---HHHHHHhhcCC-CcHhHHHHHHHHHhcCCCH-H-HHH-
Confidence 36667899999999999999999988887632 3232 34555555454 6889999999999998632 2 222
Q ss_pred HHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 180 FRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 180 f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.-.+.+.++|.+.++-||.+|+....+|+...++. ++ +++..+-.++.+.++-++-+|+.+|..+..++.
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 24566899999999999999999999999765552 22 799999999999999999999999999987653
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.12 E-value=0.0072 Score=66.58 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=75.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCCcchHH
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLNENASDCSV 221 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~-lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~ 221 (392)
+..|+..+.++.+..||+.|+.+|+-+.-+.+.. ++-++. ++++.++.+|..|+++|.-++.+++. .
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~-- 646 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q-- 646 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H--
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H--
Confidence 5567777666777889999999999876665422 233343 55678899999999999988866543 1
Q ss_pred HHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 222 VDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 222 l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
.++..|..++++.+..|+..|+.+|+.+..++.
T Consensus 647 ----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 647 ----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred ----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 235677788889999999999999999877655
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.65 E-value=0.13 Score=52.60 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=99.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHH
Q 016280 102 APLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFR 181 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~ 181 (392)
..++..- ..+...+..|+..|.....+-|..|+.. +..++.|... .|..||+.|+-.|..+|++ ...
T Consensus 32 ~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcED-ed~~IR~qaik~Lp~~ck~--~~i---- 98 (507)
T 3u0r_A 32 QVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCED-EDVSIRRQAIKELPQFATG--ENL---- 98 (507)
T ss_dssp HHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTC-SSHHHHHHHHHHGGGGCCT--TCH----
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhc-ccHHHHHHHHHhhHHHhhh--hhh----
Confidence 3344433 3468999999999999999999999864 5578888654 6899999999999999998 233
Q ss_pred HcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 182 LANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 182 ~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
..-..+|+++|++++..-..-+-..|..|+..++.. .+..+...+..++..+||+++..|..-+..-+
T Consensus 99 -~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 99 -PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp -HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred -hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcc
Confidence 335678999999988777777777777777654332 22233333333578999999999987665544
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.07 Score=48.23 Aligned_cols=200 Identities=14% Similarity=0.116 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHh---hcCCCChHHHHH-----------
Q 016280 32 DRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEH---VESIDMANDLHS----------- 97 (392)
Q Consensus 32 ~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~l---ve~iDnA~d~~~----------- 97 (392)
|++||.+.+...--|--..-|.++.++.+... .-++-.+-++..|--+ .|.|+....+.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~------~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAK------TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT------TCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHH------HhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 45677766666544444555666655433221 1223334444444433 233333222222
Q ss_pred --cCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 98 --IGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 98 --lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
-+.+|.+..-+.-.++.+|..-..+|+.++.+||..-..| +.-+..++.+ ++..=|..|+.-|+.+--++..
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~ 177 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSS-KNREDKLTALNFIEAMGENSFK 177 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHH
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcC-CChHHHHHHHHHHHHHhccCcc
Confidence 1223444455566799999999999999999999775544 4567888774 6888888999999988765542
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
- ...-++-|..+|+..|.-+|..|+-.|.+|+.-++..+.. |..-++-+.+.+..++..+-.+|+.|+
T Consensus 178 y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 178 Y-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp H-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred c-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2 3456888999999999999999999999999877665443 333455567777888888888887764
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.47 E-value=0.02 Score=56.48 Aligned_cols=153 Identities=13% Similarity=0.103 Sum_probs=82.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAF 180 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f 180 (392)
.+++..+|.+.++-||..|+.++..+...+|+.-+ +.+..+-+++.+ .++.|...|+.++..+.++...+...+
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kL 214 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKM 214 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHH
Confidence 34556788899999999999999999999986533 577778777654 688899999999988887654332222
Q ss_pred HH---cCh-----------------------------HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 181 RL---ANG-----------------------------YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 181 ~~---~gG-----------------------------l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
+. .+| ++.|..+|++.+.-|.-.|+.+|.+|...... + -..++
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~-~~~a~ 289 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----E-LAPAV 289 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CC
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----H-HHHHH
Confidence 11 111 12233333333444455555555444321100 1 11234
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhhhh
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKADGSAIK 264 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~~~ 264 (392)
..|..+|.++++.+|-.|++.|..++...|..+..|
T Consensus 290 ~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~ 325 (355)
T 3tjz_B 290 SVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC 325 (355)
T ss_dssp CTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH
Confidence 445556667777777777777777777777655544
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.07 E-value=0.051 Score=59.92 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=73.0
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcch-H
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDC-S 220 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~-~ 220 (392)
.++.++.+|....++.+|..|.+|++-++-+++. ...+..|..++++.+..|+..|+.+|..+..+.++.. .
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~ 684 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNP 684 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccch
Confidence 4678888777777899999999999999877652 2356688899999999999999999999986654431 1
Q ss_pred HHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHHH
Q 016280 221 VVDKLGFPRLMLHLAS--SEDPDVREAALRGLLELA 254 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~--~~d~~v~E~aL~aL~~L~ 254 (392)
.+ .++.++|..... +.|...+=-+.-|.+-+.
T Consensus 685 rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 685 QV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 11 133455555554 345555555555555443
No 87
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.97 E-value=0.23 Score=49.33 Aligned_cols=163 Identities=21% Similarity=0.272 Sum_probs=114.1
Q ss_pred HHHHHHHhhc--CCCChHHHHHcCChHHHHHhhc-----------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCH
Q 016280 78 MLDELQEHVE--SIDMANDLHSIGGLAPLLGYLK-----------NSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGL 143 (392)
Q Consensus 78 aL~~L~~lve--~iDnA~d~~~lGgl~~Ll~lL~-----------s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l 143 (392)
.|+.|.-.+. .+++-..|+ .+|+..|+..|. ..+..++.....||..+. |+..--+.|+.. .++
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHH
Confidence 4555554443 467789998 889999998874 124578888999999887 556555667765 677
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc-cc-HHHHH----------HcChHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 016280 144 EPLLSNFASDPDVTVRTKALGAISSLIRHNK-PG-IEAFR----------LANGYAALRDALGS-ESVKFQRKALNLIQY 210 (392)
Q Consensus 144 ~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~-~~-~~~f~----------~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~ 210 (392)
..|...+.+ ..+.++.-|+--|+.+|.-.. .+ ...++ ...-+..++..|.+ .+..++..+..+|..
T Consensus 165 ~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~ 243 (383)
T 3eg5_B 165 LLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 243 (383)
T ss_dssp HHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 888888766 578899999999988876443 22 22222 23447888888887 578999999999999
Q ss_pred HhhcCCcc------hHHHHhcCchHHHHHhhcCCChHHH
Q 016280 211 LLNENASD------CSVVDKLGFPRLMLHLASSEDPDVR 243 (392)
Q Consensus 211 L~~~~~~~------~~~l~~~G~v~~Lv~LL~~~d~~v~ 243 (392)
|+...++. +..+...|+.+.+-.+=..++.++.
T Consensus 244 li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 244 LITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 99765432 3466778988877765444454444
No 88
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.91 E-value=0.15 Score=46.96 Aligned_cols=145 Identities=20% Similarity=0.252 Sum_probs=97.3
Q ss_pred CCCChHHHHHcCChHHHHHhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCCC
Q 016280 88 SIDMANDLHSIGGLAPLLGYLKN----S-------HANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPD 155 (392)
Q Consensus 88 ~iDnA~d~~~lGgl~~Ll~lL~s----~-------~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~~ 155 (392)
.+++-..| ..||+..|+.+|.. . +..+...+..||..+. |+..--+.++.. +++..|...|.+ +.
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s-~~ 109 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AV 109 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCT-TS
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCC-CC
Confidence 45667777 46888888887752 1 4567888999998887 555555557765 577777777765 67
Q ss_pred HHHHHHHHHHHHHhhcCCc-cc-HHHHH----------HcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcc----
Q 016280 156 VTVRTKALGAISSLIRHNK-PG-IEAFR----------LANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASD---- 218 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~-~~-~~~f~----------~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~---- 218 (392)
+.+|..++--|+.+|.-.. .+ ...++ ...-+..++..+.+ .+..++..+..+|..|+...++.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~ 189 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 189 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 8899988887877765433 13 22221 22356667777774 56889998999999888764332
Q ss_pred --hHHHHhcCchHHHHHhh
Q 016280 219 --CSVVDKLGFPRLMLHLA 235 (392)
Q Consensus 219 --~~~l~~~G~v~~Lv~LL 235 (392)
+..+...|+.+.+-.+-
T Consensus 190 ~lR~ef~~~Gl~~il~~l~ 208 (233)
T 2f31_A 190 HIRSELMRLGLHQVLQELR 208 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHh
Confidence 34566777776665543
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.90 E-value=0.17 Score=55.08 Aligned_cols=137 Identities=9% Similarity=0.018 Sum_probs=91.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh---CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280 109 KNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF---ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 185 (392)
Q Consensus 109 ~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL---~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG 185 (392)
.+.+-..+..|++++|.++..-.... ...++.++..+ .. +++.+|..++|+|+..++...... .+ -..-
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~v 530 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHP-VM-INSV 530 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHH
Confidence 45677899999999999997633211 11233333322 32 467899999999999876432222 23 3467
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCC
Q 016280 186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LGFPRLMLHLASSE--DPDVREAALRGLLELAREKA 258 (392)
Q Consensus 186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~ 258 (392)
++.|...|++ ++++..|++++..|+...+.. +.. ..++..+..++... +...++.++.+++.++...+
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~---l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECKYD---LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG---CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 8888888865 889999999999999653321 211 13344455556542 56789999999999987554
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.86 E-value=0.042 Score=61.30 Aligned_cols=142 Identities=11% Similarity=0.022 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHH-HHHHcCCHHHHHHhhCC--CCCH--HHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFAS--DPDV--TVRTKALGAISSLIRHNKPGIEAFRLANG 185 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~-~vl~~g~l~~Ll~LL~s--~~~~--~vr~kAl~ALS~lvR~~~~~~~~f~~~gG 185 (392)
.+=..++.|+|++|.++..-..-++ .++. .+++.|+.++.. ..++ -++..++|.||..++-..... .| -..-
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~-L~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NF-LRTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HH-HHHH
Confidence 4678999999999999986433222 2222 367888887653 1123 345567799997665221111 22 3445
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHHHH----HhhcCCChHHHHHHHHHHHHHHc
Q 016280 186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRLML----HLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~------~G~v~~Lv----~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
+..|...|..++++++..||+++.+|+... +..+.. ..+++.++ ..+..-+..-+..+..+++.+++
T Consensus 542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c---~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHH---HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 666778887788999999999999999742 223332 12344443 33334566777888899999988
Q ss_pred CCC
Q 016280 256 EKA 258 (392)
Q Consensus 256 ~~~ 258 (392)
.-+
T Consensus 619 ~~~ 621 (1023)
T 4hat_C 619 EER 621 (1023)
T ss_dssp TCC
T ss_pred hCC
Confidence 876
No 91
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.85 E-value=0.1 Score=53.27 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=111.4
Q ss_pred CChHHHHHcCCh--HHHHHhhc-CCCHHHHHHHHHHHHHHhhCCH-----HHHHHHHHcCCHHHHHHhhCCC--CCHHHH
Q 016280 90 DMANDLHSIGGL--APLLGYLK-NSHANIRAKAGEVVTTIVQNNP-----RSQQLVMEANGLEPLLSNFASD--PDVTVR 159 (392)
Q Consensus 90 DnA~d~~~lGgl--~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNNp-----~~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr 159 (392)
+-+..|...+.. +.|+..++ +....|-+-+..++-|+...++ ...+.++..++ +++++.|... .|+++.
T Consensus 260 ~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ 338 (480)
T 1ho8_A 260 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELR 338 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHH
Confidence 345556555422 44555565 4667788888889999998763 22333444455 4577666643 344433
Q ss_pred HHHHHH---------------------HHHhhcCCcccHH-HHH--------H--cChHHHHHHhhcC----------CC
Q 016280 160 TKALGA---------------------ISSLIRHNKPGIE-AFR--------L--ANGYAALRDALGS----------ES 197 (392)
Q Consensus 160 ~kAl~A---------------------LS~lvR~~~~~~~-~f~--------~--~gGl~~L~~lL~s----------~d 197 (392)
.-.-+- -|...+-.|.... .|= + ..-+..|+.+|.+ .|
T Consensus 339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d 418 (480)
T 1ho8_A 339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 418 (480)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence 322111 1122222333332 332 2 1235667888873 46
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 198 VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 198 ~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.+..-||+=|..++...|..+..+.+.|+=..+++|+.++|++|+..||.++..+..++
T Consensus 419 ~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 419 KIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred cceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999999887655
No 92
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.63 E-value=1.8 Score=42.15 Aligned_cols=174 Identities=13% Similarity=0.181 Sum_probs=111.4
Q ss_pred HHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcC---hHHHHHHhhcCCC
Q 016280 121 EVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLAN---GYAALRDALGSES 197 (392)
Q Consensus 121 ~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~g---Gl~~L~~lL~s~d 197 (392)
.+|..|+.+ +.+...++..+.+-.+.+.+.. ++-++..-|...+-.+...|+.....|+..+ -+...-.+|.|++
T Consensus 145 ~mLRecir~-e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N 222 (341)
T 1upk_A 145 IMLRECIRH-EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN 222 (341)
T ss_dssp HHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHh-HHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence 334444443 3344445555555566665444 5678888888888888777776666776544 2455678899999
Q ss_pred HHHHHHHHHHHHHHhhcCCcchHHHH----hcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC--hhhhhhhhhhHHH
Q 016280 198 VKFQRKALNLIQYLLNENASDCSVVD----KLGFPRLMLHLASSEDPDVREAALRGLLELAREKA--DGSAIKLAEDNEK 271 (392)
Q Consensus 198 ~kl~~kA~~lLs~L~~~~~~~~~~l~----~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~--~~~~~~~~~~~~~ 271 (392)
--.|+.++-+|+.|+.+ +.+...+. +..-+..++.||++....+|-.|..+.--.+.+.. +.+...+..--.+
T Consensus 223 YVTkRQSlKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~k 301 (341)
T 1upk_A 223 YVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK 301 (341)
T ss_dssp HHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH
T ss_pred chhHHHHHHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHH
Confidence 99999999999999964 45544333 33568899999999999999999988877665432 2233222222222
Q ss_pred HHHHHHHHHhhhcCCCh-hhHHHHHHHHHHHHH
Q 016280 272 LKQLLGERIKGISLMSP-EDLGAAREERHLVDS 303 (392)
Q Consensus 272 L~~~L~~~~~~i~~~~~-ed~~~~~ee~~~~~~ 303 (392)
|.. -+..... +. || +.+.+|++++-.
T Consensus 302 Ll~----fl~~f~~-d~~eD-eqF~dEK~~lI~ 328 (341)
T 1upk_A 302 LIE----FLSKFQN-DRTED-EQFNDEKTYLVK 328 (341)
T ss_dssp HHH----HHHHTTT-TC-CC-SHHHHHHHHHHH
T ss_pred HHH----HHHhCCC-CCcch-hhHHHHHHHHHH
Confidence 222 2333221 22 33 568888877533
No 93
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.56 E-value=0.12 Score=56.43 Aligned_cols=135 Identities=9% Similarity=0.011 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh---hC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChH
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN---FA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGY 186 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L---L~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl 186 (392)
.+-..|+.|..++|.++........ ..++.++.+ +. .+.++.||..++|+|+.++....... .+ -...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~-l~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AY-IPPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----C-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HH-HHHHH
Confidence 4556899999999999876443221 223333332 23 24578999999999999875322211 11 22356
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcC--CChHHHHHHHHHHHHHHcCCC
Q 016280 187 AALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASS--EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 187 ~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~--~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.|...|. ++++..|++++.+|+.... ..+... .++..+..++.. -+.+.++.++.+++.++..-+
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 66777773 7899999999999996533 222211 455566667776 357899999999999987543
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.75 Score=42.59 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=100.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HHHH-HcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCccc---H
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQ--QLVM-EANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPG---I 177 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q--~~vl-~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~---~ 177 (392)
|-.-|.|.+=..|..|..-|..+.++++... +.++ ..+.+..++.-...|.+..+..+++.+|..++...... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4567889999999999999999888766432 1111 23444445544446789999999999999998764322 1
Q ss_pred HHH--HHcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 178 EAF--RLANGYAALR-DALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 178 ~~f--~~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
..+ .....++.|+ ++|.+...+++..|..++..++...... .. +++.++..+.+.++.++..++..|..+.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 222 2234456555 4678888999999998888877532221 11 2456777888999999999999999887
Q ss_pred cCC
Q 016280 255 REK 257 (392)
Q Consensus 255 ~~~ 257 (392)
...
T Consensus 168 ~~f 170 (278)
T 4ffb_C 168 AAF 170 (278)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 95
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.18 E-value=0.43 Score=47.34 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=105.2
Q ss_pred CCCChHHHHHcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCCCCC
Q 016280 88 SIDMANDLHSIGGLAPLLGYLKN-----------SHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFASDPD 155 (392)
Q Consensus 88 ~iDnA~d~~~lGgl~~Ll~lL~s-----------~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s~~~ 155 (392)
.+++-..|. .+|+..|+.+|.. .+..+...+..||..+. ||..--+.|+.. +++..|...|.+ +.
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s-~~ 113 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDP-AV 113 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCT-TS
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCC-CC
Confidence 456677775 6888888877641 14577888999998887 555455556666 677777777765 57
Q ss_pred HHHHHHHHHHHHHhhcCCc-cc-HHHH----------HHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCcc----
Q 016280 156 VTVRTKALGAISSLIRHNK-PG-IEAF----------RLANGYAALRDALG-SESVKFQRKALNLIQYLLNENASD---- 218 (392)
Q Consensus 156 ~~vr~kAl~ALS~lvR~~~-~~-~~~f----------~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~~---- 218 (392)
+.++..++--|+.+|--.. .+ ...+ ....-+..|+..+. +.+..++..+..+|..|+...++.
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~ 193 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 193 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 8888888877777765432 13 2222 12335667888887 467899999999999999765432
Q ss_pred --hHHHHhcCchHHHHHhhcCCChHHHHH
Q 016280 219 --CSVVDKLGFPRLMLHLASSEDPDVREA 245 (392)
Q Consensus 219 --~~~l~~~G~v~~Lv~LL~~~d~~v~E~ 245 (392)
+..+...|+.+.+-.+-...+.++..+
T Consensus 194 ~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 194 HIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 356778898887776655555554433
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.99 E-value=0.41 Score=53.02 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHH-HHHHcCCHHHHHHhhCC----CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFAS----DPDVTVRTKALGAISSLIRHNKPGIEAFRLANG 185 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~-~vl~~g~l~~Ll~LL~s----~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG 185 (392)
.+-..+..|++++|.++.......+ .++. ..++.|+.+... ++.+-++..++|+++..++-..... .+ -...
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~-l~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NF-LRTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HH-HHHH
Confidence 5677899999999999875432211 1111 234445553221 1233455568899987664322222 22 2346
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh------cCchHH----HHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK------LGFPRL----MLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~------~G~v~~----Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
++.|...|.+++.+++..||+++..|+...+ ..+.. ..+++. +..++..-+.+-......+++.++.
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7778888888899999999999999997532 22320 122333 3444555555556677788888766
Q ss_pred CCC
Q 016280 256 EKA 258 (392)
Q Consensus 256 ~~~ 258 (392)
..+
T Consensus 619 ~~~ 621 (1049)
T 3m1i_C 619 EER 621 (1049)
T ss_dssp TCC
T ss_pred cCC
Confidence 554
No 97
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.89 E-value=0.35 Score=53.00 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC---C--CCCHHHHHHHHHHHHHhhcCCc----c--------c
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA---S--DPDVTVRTKALGAISSLIRHNK----P--------G 176 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~---s--~~~~~vr~kAl~ALS~lvR~~~----~--------~ 176 (392)
.+|..|..+|..++...+ +.++.. .++.+-+.+. . ..+-..|..|++|+++++.+.. . .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 589999999999998866 222221 2222223333 1 2355688899999999975421 0 2
Q ss_pred HHHHHHcChHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHH
Q 016280 177 IEAFRLANGYAALRDALGSE---SVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLEL 253 (392)
Q Consensus 177 ~~~f~~~gGl~~L~~lL~s~---d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L 253 (392)
...|+..- +...|.++ .+.+|.+|+|+++.++..- ..+. -..+++.++..|.+++..|+.+|+.||.++
T Consensus 452 l~~~l~~~----v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 452 VVDFFTKE----IAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp HHHHHHHH----THHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----hHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 22332222 23334555 8999999999999998652 1221 224577788888888899999999999999
Q ss_pred HcC
Q 016280 254 ARE 256 (392)
Q Consensus 254 ~~~ 256 (392)
+..
T Consensus 524 ~~~ 526 (960)
T 1wa5_C 524 LTI 526 (960)
T ss_dssp TTC
T ss_pred Hhc
Confidence 874
No 98
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.30 E-value=0.29 Score=53.24 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhh
Q 016280 115 IRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDAL 193 (392)
Q Consensus 115 IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL 193 (392)
.|..+..+|..++...+ .+-..+++ .+...+.......+-..+..++|||++++.+.......++. ..++.|..+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~--~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~l- 498 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYD--KLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPRI- 498 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH--HHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGGS-
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhC-
Confidence 36667777777664322 11111111 12222221123356778899999999999886543222221 123333222
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 194 GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 194 ~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
.++++.++..++|+++.++..-....+ +. ..+++.++..|.+ +.++.+|+.+|..++.++..
T Consensus 499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~ 560 (963)
T 2x19_B 499 SISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKY 560 (963)
T ss_dssp CCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 335789999999999988753111121 11 2677888887754 88999999999999987653
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.26 E-value=1.4 Score=40.98 Aligned_cols=140 Identities=13% Similarity=0.068 Sum_probs=97.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc-CCcccHHHHHH
Q 016280 104 LLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-HNKPGIEAFRL 182 (392)
Q Consensus 104 Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR-~~~~~~~~f~~ 182 (392)
...|.+++..++|..|+.+||.+ .. ..+ .++.+...+..+.+=.||.-+..+++.++. -++..
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~~---~~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------ 139 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-SK---DKE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------ 139 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-TT---SHH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT------
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-cC---cHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH------
Confidence 34566888899999999999988 21 111 344444546667777899999999998885 22321
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCChhhh
Q 016280 183 ANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKADGSA 262 (392)
Q Consensus 183 ~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~~~ 262 (392)
-++.+...+.+++..+|+-|.-.+.--+.. +..+. .-.-+++.|..+..+++.-||..+..+|-.+++++|+.+.
T Consensus 140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp --THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 456778889999999999887766433321 11100 0012456666677788899999999999999999997665
Q ss_pred hh
Q 016280 263 IK 264 (392)
Q Consensus 263 ~~ 264 (392)
..
T Consensus 215 ~~ 216 (240)
T 3l9t_A 215 IE 216 (240)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 100
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.14 E-value=1.4 Score=49.28 Aligned_cols=220 Identities=15% Similarity=0.201 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhC-CccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc
Q 016280 31 EDRRWFMEAMQSQ-TVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLK 109 (392)
Q Consensus 31 E~~~~L~~Al~~~-~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~ 109 (392)
.-|.||.+|+... +...++.|++.+ .++.++..+...+|-.+...+ -.-... +..+..++.
T Consensus 340 ~~r~~~lDal~~aGT~~a~~~i~~~i----------~~~~l~~~ea~~~l~~~~~~~---~Pt~e~-----l~~~~~l~~ 401 (1056)
T 1lsh_A 340 DYRRWILDAVPAMATSEALLFLKRTL----------ASEQLTSAEATQIVASTLSNQ---QATRES-----LSYARELLN 401 (1056)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHH----------HTTCSCHHHHHHHHHHHHHTC---CCCHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHhHhcCCHHHHHHHHHHH----------HcCCCCHHHHHHHHHHhhccC---CCCHHH-----HHHHHHHHh
Confidence 3456777777664 444455555532 223345544333433333222 121222 344555665
Q ss_pred C----CCHHHHHHHHHHHHHHhh----CCHHHHHHHHHcCCHHHHH----HhhCCCCCHHHHHHHHHHHHHhhcCCcccH
Q 016280 110 N----SHANIRAKAGEVVTTIVQ----NNPRSQQLVMEANGLEPLL----SNFASDPDVTVRTKALGAISSLIRHNKPGI 177 (392)
Q Consensus 110 s----~~~~IR~~Aa~vLg~iaq----NNp~~Q~~vl~~g~l~~Ll----~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~ 177 (392)
+ .++.+|..|.-.+|+++. +++.|.. ..++++. ..+.+ .+...+..++-||+|+- ++
T Consensus 402 ~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g--~p--- 470 (1056)
T 1lsh_A 402 TSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAG--QP--- 470 (1056)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHT--CG---
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccC--Ch---
Confidence 5 467888888888888764 3322221 1233343 33344 46778899999999984 34
Q ss_pred HHHHHcChHHHHHHhhcC-------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhh--cCCChHHHHHHHH
Q 016280 178 EAFRLANGYAALRDALGS-------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLA--SSEDPDVREAALR 248 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s-------~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL--~~~d~~v~E~aL~ 248 (392)
..++.|..++.. ...+++..|+++|+.+....+.. +-+.+..+. ...+.++|-.|+.
T Consensus 471 ------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 471 ------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp ------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred ------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHH
Confidence 245666777642 24689999999999987543221 223456666 4667888888877
Q ss_pred HHHHHHcCCCh----hhhhhh-hhhHHHHHHHHHHHHhhhcCCChhhHHHHH
Q 016280 249 GLLELAREKAD----GSAIKL-AEDNEKLKQLLGERIKGISLMSPEDLGAAR 295 (392)
Q Consensus 249 aL~~L~~~~~~----~~~~~~-~~~~~~L~~~L~~~~~~i~~~~~ed~~~~~ 295 (392)
+|.. ++-+. .+...+ .++..++...+...++++...+..+...+.
T Consensus 537 ~Lm~--t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la 586 (1056)
T 1lsh_A 537 VFFE--SKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVA 586 (1056)
T ss_dssp HHHH--TCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHH--HCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 6642 22221 111111 446677888888889888876544444433
No 101
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.04 E-value=0.28 Score=53.76 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHhhCCH-------------HHHHHHHHcCCHHHHHHhhCCC--CCHHHHHHHHHHHHHhhcCCc
Q 016280 110 NSHANIRAKAGEVVTTIVQNNP-------------RSQQLVMEANGLEPLLSNFASD--PDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaqNNp-------------~~Q~~vl~~g~l~~Ll~LL~s~--~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+++-..|..|..++|.++.+.. .... ++..-++| .|.+. .++-+|..|+|+|+.++...+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~-~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD-FFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH-HHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH-HHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence 4566789999999999985421 1111 11111222 22322 278999999999999887642
Q ss_pred ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCC-------c-chHHHHhc--CchHHHHHhhcCCC---h-
Q 016280 175 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENA-------S-DCSVVDKL--GFPRLMLHLASSED---P- 240 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~-------~-~~~~l~~~--G~v~~Lv~LL~~~d---~- 240 (392)
+ .+ -...++.++..|.+++.+|+..|+++|..|+.... . .+..+... .+++.|+.++.... .
T Consensus 491 ~---~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~ 566 (960)
T 1wa5_C 491 K---AQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK 566 (960)
T ss_dssp H---HH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred H---HH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence 1 22 34568888889988889999999999999986311 1 12222211 34555666666531 1
Q ss_pred -HHHHHHHHHHHHHHc
Q 016280 241 -DVREAALRGLLELAR 255 (392)
Q Consensus 241 -~v~E~aL~aL~~L~~ 255 (392)
...+.++.+|..++.
T Consensus 567 ~~~~e~l~~al~~vv~ 582 (960)
T 1wa5_C 567 LAENEFLMRSIFRVLQ 582 (960)
T ss_dssp HTSCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 133566666666554
No 102
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.02 E-value=3.5 Score=37.57 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=84.7
Q ss_pred HcCCHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHH
Q 016280 139 EANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNL 207 (392)
Q Consensus 139 ~~g~l~~Ll~LL~s----------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~l 207 (392)
..+|+..|+..|.. ..+......++.||.++. ++..+...+.. .+++..|..+|.++..+++..|+.+
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leL 119 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence 45787777777642 113466778889998887 56667777665 5689999999999999999999999
Q ss_pred HHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280 208 IQYLLNENA-SD-CSVVD----------KLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 208 Ls~L~~~~~-~~-~~~l~----------~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
|..+|.-.. .. ...+. +..-...+++.++ +.+.+++..++..+-.++...+
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence 999986543 23 22222 1134566788777 5667888888877777776655
No 103
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.00 E-value=0.97 Score=50.13 Aligned_cols=174 Identities=12% Similarity=0.160 Sum_probs=124.6
Q ss_pred HHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCC
Q 016280 76 EDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS 152 (392)
Q Consensus 76 ~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s 152 (392)
|.|+..+..+++.... .-.-+-++.++.++..+......||..|..++-.++++ ||..- ...+|.|+..+.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc
Confidence 7788888888865533 33333457788888888888899999999999998886 45332 3468999998876
Q ss_pred CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CCcchH----HH-----
Q 016280 153 DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNE-NASDCS----VV----- 222 (392)
Q Consensus 153 ~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~-~~~~~~----~l----- 222 (392)
...=..+..|+..|..++... +.+-...-..-+|++..++......++..|...+..+|.- ++.+.+ .+
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence 545578899999999999765 3444555678899999999999999999998888888753 112211 11
Q ss_pred ---------HhcC---------------chHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 223 ---------DKLG---------------FPRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 223 ---------~~~G---------------~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
...+ ++|.|..-|......++.+++-++.||++
T Consensus 224 ~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 224 DPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp CTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred ChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 1111 22333344556677888888889999987
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.88 E-value=0.74 Score=43.27 Aligned_cols=185 Identities=20% Similarity=0.257 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCC-hHHHHHc-CChHHHHH-------hhcCC--CHHH--H-HHHHHHHHHHhhCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDM-ANDLHSI-GGLAPLLG-------YLKNS--HANI--R-AKAGEVVTTIVQNNPRSQQL 136 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDn-A~d~~~l-Ggl~~Ll~-------lL~s~--~~~I--R-~~Aa~vLg~iaqNNp~~Q~~ 136 (392)
.++.++.|+-+|..--|+.+. |--+-.. |.+..|++ .|..+ .+.. | ..|..++-.+|+ +|+.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 456789999999887777644 5555444 55555543 22222 1222 2 233333444554 7889999
Q ss_pred HHHcCCH---HHHHHhhCCC-CCHHHHHHHHHHHHHhhcCCcccHHHH-HHcChHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 016280 137 VMEANGL---EPLLSNFASD-PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALGSESVKFQRKALNLIQYL 211 (392)
Q Consensus 137 vl~~g~l---~~Ll~LL~s~-~~~~vr~kAl~ALS~lvR~~~~~~~~f-~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L 211 (392)
|++.+.. -|++..-..+ +-+.+|-.+++.|++++....+..-.| ...+-++...+.+...+.--|..|.|.+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 9998753 4455543322 235799999999999998765554444 5678999999999999999999999999999
Q ss_pred hhcCCcchHH-------HHhc-CchHHHH-HhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 212 LNENASDCSV-------VDKL-GFPRLML-HLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 212 ~~~~~~~~~~-------l~~~-G~v~~Lv-~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.++ ..... |... .++..+| .+...+..-+..|+.++-..|+.+.
T Consensus 173 L~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 173 LLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred hccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 8653 22222 2222 1223333 3445677777788888777776554
No 105
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.80 E-value=0.06 Score=54.98 Aligned_cols=138 Identities=13% Similarity=0.184 Sum_probs=94.8
Q ss_pred HHHHHHHHhhcCC-CC----hHHHHHcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhh--------------------
Q 016280 77 DMLDELQEHVESI-DM----ANDLHSIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQ-------------------- 128 (392)
Q Consensus 77 ~aL~~L~~lve~i-Dn----A~d~~~lGgl~~Ll~lL~s---~~~~IR~~Aa~vLg~iaq-------------------- 128 (392)
-++-.|.++++.. ++ ...++-.|...+++..|.. ++++|...--.+...+.+
T Consensus 291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L 370 (480)
T 1ho8_A 291 LCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLL 370 (480)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCc
Confidence 4577888888854 22 2333333445667777753 677776543333322221
Q ss_pred -CCHHHHH-HHHHc----------CCHHHHHHhhCC---------CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHH
Q 016280 129 -NNPRSQQ-LVMEA----------NGLEPLLSNFAS---------DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYA 187 (392)
Q Consensus 129 -NNp~~Q~-~vl~~----------g~l~~Ll~LL~s---------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~ 187 (392)
-.|.... .|-.. ..+..|+++|.+ +.|+.+..-|.+=|+.+||++|.+....-+.||=.
T Consensus 371 ~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~ 450 (480)
T 1ho8_A 371 CWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKA 450 (480)
T ss_dssp CCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHH
T ss_pred ccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHH
Confidence 1221111 12211 236889999874 24678899999999999999999998888899999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 188 ALRDALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 188 ~L~~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
.++.+|.++|+.||..|+.++..+..+
T Consensus 451 ~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 451 DIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 106
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.37 E-value=2.1 Score=42.22 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCCCHHH
Q 016280 132 RSQQLVMEANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKF 200 (392)
Q Consensus 132 ~~Q~~vl~~g~l~~Ll~LL~s----------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl 200 (392)
-+++ |. .+|+..|+..|.. ..+......++.||.++. ++..+...++. ..++..|..+|.+...++
T Consensus 102 WV~~-F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 102 WVQT-FG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHH-HH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHH-HH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 4444 44 6678888887741 224577788889998887 55667776665 578999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-cc-hHHHH----------hcCchHHHHHhhcC-CChHHHHHHHHHHHHHHcCCC
Q 016280 201 QRKALNLIQYLLNENA-SD-CSVVD----------KLGFPRLMLHLASS-EDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 201 ~~kA~~lLs~L~~~~~-~~-~~~l~----------~~G~v~~Lv~LL~~-~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.-|+.+|+.+|.-.. .+ ...+. +..-...++..|.. .+.+++..++..+-.++...+
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 9999999999996543 22 22222 22446778888886 678888888887777777665
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.93 E-value=1.6 Score=48.16 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC-CCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS-DPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s-~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l 192 (392)
..|..+..+|-.++...+. .++.. .++.|-+.+.. ..+-..+..|+||++++..........-....-++.|..+
T Consensus 428 ~~~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l 503 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence 3566788888888865542 12221 12333333332 3456788999999999986543321111122234444443
Q ss_pred hcC-----CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 193 LGS-----ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 193 L~s-----~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
... +.+.++..++|+++.++.--....+.+. .+++.++..+.+++..|+.+|..+|.+++.++.
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 321 2345555688998876532111111111 356667777888899999999999999998764
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.79 E-value=0.07 Score=49.77 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHH-----HHHhh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcc
Q 016280 102 APLLGYLKNSHANIRAKAGEVV-----TTIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKP 175 (392)
Q Consensus 102 ~~Ll~lL~s~~~~IR~~Aa~vL-----g~iaq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~ 175 (392)
+.|..+++.++..||..++.-+ ..+++ .++.++..+...-. +.++..+.+|++..||..++.+++
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d~~VR~~aA~~l~-~~~l~~l~~D~d~~VR~~aa~~l~-------- 171 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIP-PGRLFRFMRDEDRQVRKLVAKRLP-------- 171 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSC-GGGGGGTTTCSCHHHHHHHHHHSC--------
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcC-HHHHHHHHcCCCHHHHHHHHHcCC--------
Confidence 3455666667777777666432 22333 35566666555422 345555677788999998877521
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALR 248 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~ 248 (392)
.+.|..++++++..||..++..+ ..+.|..++.+++..||..++.
T Consensus 172 ----------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 172 ----------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp ----------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred ----------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 24556777888888888777542 1234555566666666666653
No 109
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.31 E-value=0.094 Score=48.88 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=83.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHH-----HHHhh-CCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVV-----TTIVQ-NNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vL-----g~iaq-NNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
...+..+++++++.||..|+..+ ..+.+ .++.++..+...-... ++..|.+|++..||..++..+ +
T Consensus 76 ~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~-~L~~L~~D~d~~VR~~aA~~l-------~ 147 (244)
T 1lrv_A 76 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLE-QLEQMAADRDYLVRAYVVQRI-------P 147 (244)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTG-GGGGGTTCSSHHHHHHHHHHS-------C
T ss_pred HHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHH-HHHHHHcCCCHHHHHHHHHhc-------C
Confidence 34466788999999999999644 33344 4778888777653333 444456678999999888732 1
Q ss_pred ccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHH----
Q 016280 175 PGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGL---- 250 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL---- 250 (392)
.+.+..++++++..||..++.. +. .+.+..++.+++..||..++..|
T Consensus 148 -----------~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l~~~~ 198 (244)
T 1lrv_A 148 -----------PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRLRGDD 198 (244)
T ss_dssp -----------GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHCCGGG
T ss_pred -----------HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhCCHHH
Confidence 1345677788899999988764 10 13455678899999999888655
Q ss_pred -HHHHcCCChhhh
Q 016280 251 -LELAREKADGSA 262 (392)
Q Consensus 251 -~~L~~~~~~~~~ 262 (392)
..+..+..+.++
T Consensus 199 L~~Ll~D~d~~VR 211 (244)
T 1lrv_A 199 LLELLHDPDWTVR 211 (244)
T ss_dssp GGGGGGCSSHHHH
T ss_pred HHHHHcCCCHHHH
Confidence 334444444443
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.24 E-value=0.91 Score=50.35 Aligned_cols=171 Identities=12% Similarity=0.146 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCH---HHHHHHHHcCCHHHHHHh
Q 016280 73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNP---RSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp---~~Q~~vl~~g~l~~Ll~L 149 (392)
++...+...+..++..--....+. .|.+..|.+.+.+.... +.|+.+++.+++..+ ...-.++ +.++.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~ 103 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTN 103 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHH
Confidence 455667777777766321111111 35567777777765444 999999999996442 2322233 578888888
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCCcchHHHHhc-Cc
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSE-SVKFQRKALNLIQYLLNENASDCSVVDKL-GF 227 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~-d~kl~~kA~~lLs~L~~~~~~~~~~l~~~-G~ 227 (392)
+. |....||..|-+|+-+++...++..- ..-++.|...|.+. .=..+.-|+.++..|+...+.. .-... .+
T Consensus 104 ~~-dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~--~~~~~~~~ 176 (986)
T 2iw3_A 104 AG-NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ--VALRMPEL 176 (986)
T ss_dssp TT-CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH--HHHHHHHH
T ss_pred hc-CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH--HHHhccch
Confidence 55 46789999999999999987765322 33578888888765 4678888999999999754321 11122 57
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHc
Q 016280 228 PRLMLHLASSEDPDVREAALRGLLELAR 255 (392)
Q Consensus 228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~ 255 (392)
||.+.+.+.+...+|...|..++..+++
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 8888889999999999988888888776
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.14 E-value=1.2 Score=48.55 Aligned_cols=137 Identities=13% Similarity=0.040 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhCCH-HHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH
Q 016280 114 NIRAKAGEVVTTIVQNNP-RSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD 191 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp-~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~ 191 (392)
..|..++.++-.++...+ .+-..++. .+...+.... ...+-..+..|++++++++.+.......++. .-++.+..
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~--~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~ 512 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAA--MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAE 512 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHH--HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHh
Confidence 477888888888887654 22222221 1222222211 1134568899999999999876543321111 12333333
Q ss_pred hhc-CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCCC
Q 016280 192 ALG-SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 192 lL~-s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.. ..++.+|..++++++.++..-..+.+.+. .+++.|+..| + +.++.+|..+|..+++++.
T Consensus 513 l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 513 IPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp SCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 322 24799999999999998753221111111 3455566666 2 7899999999999998765
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.13 E-value=7.6 Score=36.20 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCh--HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMA--NDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLS 148 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA--~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~ 148 (392)
+.+++...|....+++-+.|.+ .+| ++.++.+...++.+||...+..|..++...+...- ..++.|..
T Consensus 28 ~~~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~ 97 (257)
T 3gs3_A 28 SPSTKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSM 97 (257)
T ss_dssp CHHHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 4468888888888876655432 333 67777777778999999999999999866554332 24667777
Q ss_pred hhCCCCCHHHHHHHHHHHHHhhcC-------Ccc----cHHHHHHcChHH-HHHHhhcCCCHHHHHHHHHHHHHHhh--c
Q 016280 149 NFASDPDVTVRTKALGAISSLIRH-------NKP----GIEAFRLANGYA-ALRDALGSESVKFQRKALNLIQYLLN--E 214 (392)
Q Consensus 149 LL~s~~~~~vr~kAl~ALS~lvR~-------~~~----~~~~f~~~gGl~-~L~~lL~s~d~kl~~kA~~lLs~L~~--~ 214 (392)
++. +.++.|.++++.+.+++-+- ++. .....-....+. .+...+.+.+..+|..|.-++..++. .
T Consensus 98 Ll~-d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 98 LLR-DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp HTT-CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence 766 56899999999998887541 221 122222222222 35666788899999999988888762 1
Q ss_pred CC--c--------------------chHHHHhc--CchHHHHHhhcCCC--hHHHHHHHHHHHHHHcCCChhh
Q 016280 215 NA--S--------------------DCSVVDKL--GFPRLMLHLASSED--PDVREAALRGLLELAREKADGS 261 (392)
Q Consensus 215 ~~--~--------------------~~~~l~~~--G~v~~Lv~LL~~~d--~~v~E~aL~aL~~L~~~~~~~~ 261 (392)
.+ . ....+.+. +++..|+..+.+++ ......+++.|..|++..|.+.
T Consensus 177 ~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 177 FADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp CCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 11 0 01222222 56777777766553 3356788888888888887654
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.70 E-value=11 Score=37.23 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhcCCCC--hHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhh
Q 016280 73 QDIEDMLDELQEHVESIDM--ANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNF 150 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDn--A~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL 150 (392)
+++...|..+.+++-+.|. ..+| ++.++.+-..++.+||...+..|+.++...++.-- ..++.|..+|
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~f-----l~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL 109 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNF-----LDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL 109 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGG-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4566777777776443332 3333 78888888889999999999999998875443322 2456677776
Q ss_pred CCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh--------------H-HHHHHhhcCCCHHHHHHHHHHHHHHhh--
Q 016280 151 ASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG--------------Y-AALRDALGSESVKFQRKALNLIQYLLN-- 213 (392)
Q Consensus 151 ~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG--------------l-~~L~~lL~s~d~kl~~kA~~lLs~L~~-- 213 (392)
. +.++.|.++++.|.+++-+ .....++..++ + ..+...+.+.+..+|..|.-++..++.
T Consensus 110 ~-d~d~~V~K~~I~~~tslYp---l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 110 R-DENVNVVKKAILTMTQLYK---VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp T-CSSHHHHHHHHHHHHHHHH---HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHHHHH---HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 5 5688999999998888753 12222222211 1 235566788899999999988888762
Q ss_pred c----CCc-------c--------------hHHHHh--cCchHHHHHhhcCC--ChHHHHHHHHHHHHHHcCCChh
Q 016280 214 E----NAS-------D--------------CSVVDK--LGFPRLMLHLASSE--DPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 214 ~----~~~-------~--------------~~~l~~--~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
. ++. + ...+.+ .+++..|+..+..+ +......+++.|..|++..|.+
T Consensus 186 S~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~ 261 (386)
T 3o2t_A 186 SPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF 261 (386)
T ss_dssp SCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG
T ss_pred CCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH
Confidence 1 000 0 122222 26778888888754 3445567889999999888865
No 114
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.23 E-value=1.3 Score=42.64 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=69.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc--C----hHHHHHHhhcC---CCHHHHHHHHHHHHHHhh
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA--N----GYAALRDALGS---ESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~--g----Gl~~L~~lL~s---~d~kl~~kA~~lLs~L~~ 213 (392)
+..|+ +... .++.++.+|...|++++||||++...+... . -++-|..+... ....++.+-+..|.-|+.
T Consensus 73 L~nL~-~~~~-~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~ 150 (315)
T 3qml_C 73 LANLS-LNEN-LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV 150 (315)
T ss_dssp HHHHH-HCTT-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred HHHHH-hhcc-CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 44444 3233 567899999999999999999998866542 1 12223333322 235677777888888886
Q ss_pred cCCcchHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHHH
Q 016280 214 ENASDCSVVDKLGFPRLMLHLASSE--DPDVREAALRGLLELA 254 (392)
Q Consensus 214 ~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~aL~aL~~L~ 254 (392)
.. . .|.. ..+..|..++... +.+++.+++..+..+-
T Consensus 151 ~~-~---~F~~-~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 151 TS-E---DLPI-YSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp CS-T---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred Ch-H---hhhh-ccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 53 2 1222 3446777776666 8999999999888765
No 115
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.40 E-value=7.2 Score=38.40 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=83.6
Q ss_pred cCCHHHHHHhhCC----------CCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHHH
Q 016280 140 ANGLEPLLSNFAS----------DPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLI 208 (392)
Q Consensus 140 ~g~l~~Ll~LL~s----------~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lL 208 (392)
.+|+..|+..|.. ..+......++.||.+++ ++..+...+.. .+++..|..+|.++..+++..++.+|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 4667667666531 114567788899999887 55667666655 57899999999999999999999999
Q ss_pred HHHhhcCC-cc-hHHHH----------hcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCCC
Q 016280 209 QYLLNENA-SD-CSVVD----------KLGFPRLMLHLAS-SEDPDVREAALRGLLELAREKA 258 (392)
Q Consensus 209 s~L~~~~~-~~-~~~l~----------~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~~ 258 (392)
..+|.-.. .. ...+. +..-...+|..+. +.+.+++..++..+-.|+...+
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCC
Confidence 99986543 22 22221 2234556787776 5677888888887777777665
No 116
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.20 E-value=7.9 Score=36.28 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=97.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc-----CCcccH
Q 016280 103 PLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR-----HNKPGI 177 (392)
Q Consensus 103 ~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR-----~~~~~~ 177 (392)
-+...|.+.+-.-|..|+..|......++..-...+ +.+-+-+.+--.+++..+..+++..|..++. ++....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l--Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNS--DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 345677777888888999999888877764322222 2232322221234688999999999998752 111111
Q ss_pred HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcCC
Q 016280 178 EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 178 ~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~ 257 (392)
. ...--+|.|+.-+.....++|..+-.++..|..-. --..+.+.++.-+++.+...|+-++..|.++....
T Consensus 128 ~--ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 128 E--EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp H--HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1 11235688888888888999999988887776421 12245677888889999999999999999886644
No 117
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.12 E-value=1.5 Score=43.31 Aligned_cols=193 Identities=16% Similarity=0.187 Sum_probs=133.2
Q ss_pred cCcHHhhhhCCCC--HHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q 016280 59 QTPEQVLESQGVT--PQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQL 136 (392)
Q Consensus 59 ~~~~~~l~~~~~~--~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~ 136 (392)
.+|++...|.+.. .....++||-|--|.++.|--.-|++..|+..+...++.++.++-...+.++-..+..-.-|.-.
T Consensus 242 ~dpet~~qNpel~~LiQVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~ 321 (619)
T 3c2g_A 242 QNPETLPQNPELAHLIQVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP 321 (619)
T ss_dssp CCGGGGGGCHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC
T ss_pred CChhcccCCHHHHHHHHHHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc
Confidence 4555554442211 13446889999888888888889999999999999999999999999999987766433222110
Q ss_pred HHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC-------CCHHHHHHHHHHHH
Q 016280 137 VMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS-------ESVKFQRKALNLIQ 209 (392)
Q Consensus 137 vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s-------~d~kl~~kA~~lLs 209 (392)
-...+|-+++.+.-.++.+|.....+-||+.+-|..+-.+.-+..|++..|-..+.. .+..-+..||..++
T Consensus 322 --L~e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~Iic 399 (619)
T 3c2g_A 322 --LENILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIIC 399 (619)
T ss_dssp --CTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHH
T ss_pred --ccccchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHH
Confidence 114577788887766788999999999999999988888877889999998877543 13444556666666
Q ss_pred HHhhc------------CCc-------chH---HHHhcCchHHHHHhhcCCC------hHHHHHHHHHHHHH
Q 016280 210 YLLNE------------NAS-------DCS---VVDKLGFPRLMLHLASSED------PDVREAALRGLLEL 253 (392)
Q Consensus 210 ~L~~~------------~~~-------~~~---~l~~~G~v~~Lv~LL~~~d------~~v~E~aL~aL~~L 253 (392)
+-++. +.. .++ .+++..+++.|+.+|+-+. .++|...|+...-+
T Consensus 400 N~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lv 471 (619)
T 3c2g_A 400 NCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILL 471 (619)
T ss_dssp HHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Confidence 54421 111 122 4556678899999987432 24666666554433
No 118
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.87 E-value=0.43 Score=41.62 Aligned_cols=71 Identities=10% Similarity=0.028 Sum_probs=57.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIR 171 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR 171 (392)
+..|.+-|++.++.++.+|..+|-+|++|. +.++..|.....+..|+.++....++.|+.|++..|-.-..
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 445667788999999999999999999994 67887777777788888887755678999999887665443
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.66 E-value=2.1 Score=47.73 Aligned_cols=104 Identities=8% Similarity=-0.045 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC---CCH--HHHHHHHHHHHHHhhcCCcchHHHHhcCch
Q 016280 154 PDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS---ESV--KFQRKALNLIQYLLNENASDCSVVDKLGFP 228 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s---~d~--kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v 228 (392)
.+=..+..++||++++..+-.+....-.....++.|..++.. ++. .++.-++|+|+..+.--..+.+.+ ..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 456789999999999997655443333355678888888753 233 445557788876653110111110 0234
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 229 RLMLHLASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 229 ~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
..|+..+..+++.+++.|..++.+|+.++..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555667789999999999999997753
No 120
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=89.14 E-value=10 Score=35.55 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhh-CCHHHHHHHHHcCCHHHHHHh
Q 016280 76 EDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS-----HANIRAKAGEVVTTIVQ-NNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 76 ~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~-----~~~IR~~Aa~vLg~iaq-NNp~~Q~~vl~~g~l~~Ll~L 149 (392)
-.+|.-|+-.....|....|.+....-.|..+|+.. ..-+|-.+..+||.+++ +++++...+++.+.+|..++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 466777777777889999999999777777888654 35799999999999998 577888888999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHhhcCCcccHH-------HHH-HcChHHHHH-HhhcCCCHHHHHHHHHHHHHHhh
Q 016280 150 FASDPDVTVRTKALGAISSLIRHNKPGIE-------AFR-LANGYAALR-DALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 150 L~s~~~~~vr~kAl~ALS~lvR~~~~~~~-------~f~-~~gGl~~L~-~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
+... ++--|.-|.|-+.-+.-+. .+.. .|. ....+.-++ .+...++.++.+........|+.
T Consensus 154 me~G-selSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 154 MESG-SELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHS-CHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred Hhhc-cHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 8874 6678888989888776442 2222 221 222333223 23344667777777666666653
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.30 E-value=14 Score=41.11 Aligned_cols=195 Identities=9% Similarity=0.051 Sum_probs=114.3
Q ss_pred CCCCHHHH-HHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHH----HhhcCCCChHHHHHcCC
Q 016280 26 RNLSEEDR-RWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQ----EHVESIDMANDLHSIGG 100 (392)
Q Consensus 26 ~~~s~E~~-~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~----~lve~iDnA~d~~~lGg 100 (392)
+.++..+. ++|.-++....++. +.|+....+++.+... ..+.-+..++-.+. .+|.+-.. |....
T Consensus 368 ~~l~~~ea~~~l~~~~~~~~Pt~-e~l~~~~~l~~~~~~~-----~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~ 437 (1056)
T 1lsh_A 368 EQLTSAEATQIVASTLSNQQATR-ESLSYARELLNTSFIR-----NRPILRKTAVLGYGSLVFRYCANTVS----CPDEL 437 (1056)
T ss_dssp TCSCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTCHHHH-----TCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGG
T ss_pred CCCCHHHHHHHHHHhhccCCCCH-HHHHHHHHHHhCcccc-----cCHHHHHHHHHHHHHHHHHHhccCCC----CCHHH
Confidence 45665543 56655554444554 6677766677665421 12222223333333 33332211 11122
Q ss_pred hHHHHH----hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC------CCCHHHHHHHHHHHHHhh
Q 016280 101 LAPLLG----YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS------DPDVTVRTKALGAISSLI 170 (392)
Q Consensus 101 l~~Ll~----lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s------~~~~~vr~kAl~ALS~lv 170 (392)
++++.. .+...+.+-+..+..+|||+-. | ..++.|..++.. +....+|..|++||..+.
T Consensus 438 v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~ 506 (1056)
T 1lsh_A 438 LQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA 506 (1056)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh
Confidence 455544 4456677888899999999975 3 245666666531 224578899999999998
Q ss_pred cCCcccHHHHHHcChHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHHHH
Q 016280 171 RHNKPGIEAFRLANGYAALRDAL--GSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREAAL 247 (392)
Q Consensus 171 R~~~~~~~~f~~~gGl~~L~~lL--~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~aL 247 (392)
...+.. .-+++.+++ ...+..+|.-|+.+|- ..+|.. ..+..+...+.. ++.+|.-.+.
T Consensus 507 ~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~ 568 (1056)
T 1lsh_A 507 KRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPSV-------ALVSMVAVRLRREPNLQVASFVY 568 (1056)
T ss_dssp GTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCCH-------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence 665422 234567777 3467888887776652 333432 235566666654 6777888888
Q ss_pred HHHHHHHcCCCh
Q 016280 248 RGLLELAREKAD 259 (392)
Q Consensus 248 ~aL~~L~~~~~~ 259 (392)
+.|.+++..+.+
T Consensus 569 S~l~sla~s~~P 580 (1056)
T 1lsh_A 569 SQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHTTCCSG
T ss_pred HHHHHHHhcCCc
Confidence 888888887754
No 122
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=88.27 E-value=7.4 Score=43.03 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=91.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH--HHHHcC
Q 016280 107 YLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE--AFRLAN 184 (392)
Q Consensus 107 lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~--~f~~~g 184 (392)
++.+.++.++..+..+|+....--|. ..+++.+.++.++.+|.. +.+|..|+-+|..+++....... .++..=
T Consensus 201 ~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l 275 (980)
T 3ibv_A 201 YSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNIL 275 (980)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH
Confidence 33457889999999999999875442 345666778888887754 68999999999999876543222 222221
Q ss_pred hHHHHHHhhc--CCCHHHHHHHHHHHHHHhhc------CCc-----chHHH-Hh-cCchHHHHHhhcCCChHHHHHHHHH
Q 016280 185 GYAALRDALG--SESVKFQRKALNLIQYLLNE------NAS-----DCSVV-DK-LGFPRLMLHLASSEDPDVREAALRG 249 (392)
Q Consensus 185 Gl~~L~~lL~--s~d~kl~~kA~~lLs~L~~~------~~~-----~~~~l-~~-~G~v~~Lv~LL~~~d~~v~E~aL~a 249 (392)
.+..+...+. ..|..+.++.+.++..+... .+. .+... .. .++++.++.++.+++.++-..++..
T Consensus 276 ~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~F 355 (980)
T 3ibv_A 276 NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPF 355 (980)
T ss_dssp HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 2222222222 46777777777666544321 110 01111 11 2688889999999999998888877
Q ss_pred HHHHHc
Q 016280 250 LLELAR 255 (392)
Q Consensus 250 L~~L~~ 255 (392)
+..+.+
T Consensus 356 w~~~l~ 361 (980)
T 3ibv_A 356 LSDLLV 361 (980)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 123
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=88.07 E-value=6.5 Score=38.07 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 016280 270 EKLKQLLGERIKGISLMSPEDLGAAREER 298 (392)
Q Consensus 270 ~~L~~~L~~~~~~i~~~~~ed~~~~~ee~ 298 (392)
.+..+.|++-+.........|.++.|.++
T Consensus 284 ~Raa~~l~eele~~GpVr~~dVE~Aq~~I 312 (329)
T 3hjl_A 284 KRAAKLFLEDMEALGPVKKSEIEKAQRQV 312 (329)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44556666666666556677888887765
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.73 E-value=2 Score=39.31 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=59.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~ 173 (392)
+..|.+-|++.++.++.+|..+|-++++| .+.++..|.....+..|+.++...++..|+.|++..|-.-...+
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 45577788899999999999999999999 44577777777777778888776678899999988877765433
No 125
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.06 E-value=1.1 Score=38.41 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=59.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~ 173 (392)
+..|.+-|++.++.++.+|..+|-+|++| .+.++..|.....+..|+.++.. .++..|+.|++..|-.-...+
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45566778899999999999999999999 46788888888888889998763 247899999988777655444
No 126
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.48 E-value=0.85 Score=40.06 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=59.4
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCC
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHN 173 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~ 173 (392)
+..|.+-|++.++.++.+|..+|-+|++|. +.++..|.....+..|+.++.. ..+..|+.|++..|-.-...+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 456777889999999999999999999996 5788778887888889988752 246899999988887765444
No 127
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=85.67 E-value=7.2 Score=43.13 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCC---CHHHHHHHHHHHH
Q 016280 48 IKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNS---HANIRAKAGEVVT 124 (392)
Q Consensus 48 ~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~---~~~IR~~Aa~vLg 124 (392)
++++.+++...-+| ..+.+.+..|.+-|..+-+.. ++|.....+|.++ +..+|..|+.+|-
T Consensus 5 ~~~v~~Al~~~~~p-------~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~ 68 (980)
T 3ibv_A 5 AQDVENAVEAALDP-------SVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLS 68 (980)
T ss_dssp HHHHHHHHHHHHCT-------TSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 34555555433233 246677778877777655543 3678888888664 7899999999999
Q ss_pred HHhhCCHHH----HHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcC
Q 016280 125 TIVQNNPRS----QQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 125 ~iaqNNp~~----Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~ 172 (392)
+..+.-+.- +...++...+..+...-.......+|.|...+|+.++..
T Consensus 69 ~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 69 EKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 888732323 444455545555544211123568999999999998765
No 128
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=85.44 E-value=4.4 Score=38.71 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHc--CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHH--HHHHHHHcCCHHHH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSI--GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPR--SQQLVMEANGLEPL 146 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~l--Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~--~Q~~vl~~g~l~~L 146 (392)
.+.+...++..+.+++..-....-+... -.+..+..++.+++..+|..++.++-|++--+-+ ..+.... .+..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--CLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--HHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHH
Confidence 4556777888888888765544333332 1222333445567999999999998887642110 0011111 34445
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHH-cChHHHHHHhhcC-CCHHHHHHHHHHH
Q 016280 147 LSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRL-ANGYAALRDALGS-ESVKFQRKALNLI 208 (392)
Q Consensus 147 l~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~-~gGl~~L~~lL~s-~d~kl~~kA~~lL 208 (392)
..++....+.+....++-||++++..... ...+.. .|.-..+.++..+ ...|+...+.+++
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~-~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSN-AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChh-HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 55566667889999999999999976443 334443 4444456666654 5677777654443
No 129
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=85.36 E-value=2.3 Score=38.51 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=56.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
+..|.+-|.+.++.++.+|..+|-++++|. +.++..|.....+..|+.++.+.++..|+.+++..|-.-.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445667788999999999999999999996 5677777777778888888776677899999887665544
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.33 E-value=2 Score=37.37 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC-
Q 016280 160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS- 237 (392)
Q Consensus 160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~- 237 (392)
....-.|+-+++..+.+. ..++..|.+-|.+.++.++..|+.+|-.++.+... ....+.+..++..|+.++..
T Consensus 33 w~~~leicD~I~~~~~~~-----keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~ 107 (163)
T 1x5b_A 33 WSLIMDICDKVGSTPNGA-----KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK 107 (163)
T ss_dssp HHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC
Confidence 344556777787655332 23566788888999999999999999999876433 34455566788888888764
Q ss_pred CChHHHHHHHHHHHHHHcC
Q 016280 238 EDPDVREAALRGLLELARE 256 (392)
Q Consensus 238 ~d~~v~E~aL~aL~~L~~~ 256 (392)
.++.|+++++..|..-+..
T Consensus 108 ~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 108 AHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6778999998887765543
No 131
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.02 E-value=2.1 Score=37.55 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=77.0
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCS 220 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~ 220 (392)
.+..+|.-..++...+.-....-.|+-+++..+.+. ..++..|.+-|++.++.++..|+.+|-.++.+... ...
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~-----k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGP-----QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 355566554443222222455567888887765432 23567788889999999999999999999876433 344
Q ss_pred HHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHHHcCC
Q 016280 221 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+.+..++..|+.++.. .+..|+++++..|..-+...
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 56677888889988862 46789999998888766543
No 132
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.90 E-value=1.3 Score=38.23 Aligned_cols=70 Identities=26% Similarity=0.240 Sum_probs=55.2
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH-HHHhhC--CCCCHHHHHHHHHHHHHhh
Q 016280 101 LAPLLGYLK-NSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFA--SDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 101 l~~Ll~lL~-s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~-Ll~LL~--s~~~~~vr~kAl~ALS~lv 170 (392)
+..|.+-|+ +.++.++.+|..+|-+|++|. +.++..|.....+.. |+.++. .+++..|+.|++..|-.-.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 445667776 489999999999999999996 888888887778887 788774 3345789999987776543
No 133
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.85 E-value=18 Score=40.41 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHH-HHHHcCCHHHHHHhhCCCC--CHH--HHHHHHHHHHHhhcCCcccHHHHHHcCh
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQ-LVMEANGLEPLLSNFASDP--DVT--VRTKALGAISSLIRHNKPGIEAFRLANG 185 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~-~vl~~g~l~~Ll~LL~s~~--~~~--vr~kAl~ALS~lvR~~~~~~~~f~~~gG 185 (392)
.+-..+..++|++|.+++.-..-.+ .++- ..++.|+.+..... +.. ++....|.+|...|=-... ..| -..-
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~-L~~v 567 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKF-LKTV 567 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHH-HHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHH-HHHH
Confidence 3578899999999999876432222 2222 35666777654321 222 4444557777754421111 123 2335
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHh--cC----chHHHHHhhc----CCChHHHHHHHHHHHHHHc
Q 016280 186 YAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDK--LG----FPRLMLHLAS----SEDPDVREAALRGLLELAR 255 (392)
Q Consensus 186 l~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~--~G----~v~~Lv~LL~----~~d~~v~E~aL~aL~~L~~ 255 (392)
+..|...+..++++++.-||.++.+++...+.. ++. .| ++..++..+. .=..+-......+++.++.
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~---lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH---FVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG---GTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH---HhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 667778888889999999999999999754432 221 12 3333333222 2234444555567777776
Q ss_pred CCC
Q 016280 256 EKA 258 (392)
Q Consensus 256 ~~~ 258 (392)
.-+
T Consensus 645 ~~p 647 (1073)
T 3gjx_A 645 AQT 647 (1073)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.43 E-value=2.8 Score=35.34 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hHHHHhcCchHHHHHhhcCC
Q 016280 160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CSVVDKLGFPRLMLHLASSE 238 (392)
Q Consensus 160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~~l~~~G~v~~Lv~LL~~~ 238 (392)
....-.|+-+++..+.+.. .++..|.+-|.+.++.++..|+.+|-.++.+.... ...+.+..++..|+.++...
T Consensus 23 w~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 23 WGLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG 97 (140)
T ss_dssp HHHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC
Confidence 4456677888887654332 35777888889999999999999999998764433 33455556777788888778
Q ss_pred ChHHHHHHHHHHHHHHcC
Q 016280 239 DPDVREAALRGLLELARE 256 (392)
Q Consensus 239 d~~v~E~aL~aL~~L~~~ 256 (392)
+..|+++++..+..-+..
T Consensus 98 ~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999877653
No 135
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.44 E-value=31 Score=32.71 Aligned_cols=203 Identities=12% Similarity=0.138 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHhh------CCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCC
Q 016280 27 NLSEEDRRWFMEAMQS------QTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGG 100 (392)
Q Consensus 27 ~~s~E~~~~L~~Al~~------~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGg 100 (392)
.|+||+..=|.+.+.. ...+. ..+.-..++++= ..+.+.-+||.|+-.+-..+.+.-|+..+.
T Consensus 76 ~Ls~~el~~L~~l~~~l~~~s~~~~~~-~~l~~l~kil~W----------P~~~~fPvLDLlRl~~l~p~~~~~~~~~~~ 144 (304)
T 3ebb_A 76 KLTEDDLILLEKILSLICNSSSEKPTV-QQLQILWKAINC----------PEDIVFPALDILRLSIKHPSVNENFCNEKE 144 (304)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSSCCCH-HHHHHHHHHHTS----------CTTTCHHHHHHHHHHTTSHHHHHHHHSTTT
T ss_pred CcCHHHHHHHHHHHHHHhccCCCccch-HHHHHHHHHHcC----------CHHhHHHHHHHHHHHHcCccHHHHhhcccc
Confidence 5888887777665542 11222 122222222221 234455677777766655444555554433
Q ss_pred hHHHH----HhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHc--CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhc--
Q 016280 101 LAPLL----GYLKN-SHANIRAKAGEVVTTIVQNNPRSQQLVMEA--NGLEPLLSNFASDPDVTVRTKALGAISSLIR-- 171 (392)
Q Consensus 101 l~~Ll----~lL~s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~--g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR-- 171 (392)
-..++ ..+.+ ..+..+..++.+++|+..+.. .++.++.. ..+..+...+. +.+..+|..+...+=|++-
T Consensus 145 ~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-g~~~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~ 222 (304)
T 3ebb_A 145 GAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-GQKLMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCF 222 (304)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-HHHHHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-hHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHH
Confidence 33333 33332 456679999999999998754 55555543 22333333333 3577888777655554432
Q ss_pred -CCcccHHHHHHcChHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcC-CChHHHHH
Q 016280 172 -HNKPGIEAFRLANGYAALRDALGS-ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASS-EDPDVREA 245 (392)
Q Consensus 172 -~~~~~~~~f~~~gGl~~L~~lL~s-~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~-~d~~v~E~ 245 (392)
... .... ..--+..+..++.. .+....-+++-+|..|+..+.+-++.....|+-..+-.+... ....|.|.
T Consensus 223 ~~~~-~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 223 HKDH-NIEG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHSC-CHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred hhcC-CchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 111 1111 11133444455543 578888889999999997654444444455655544444443 33344443
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.40 E-value=3.1 Score=35.52 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhcC--
Q 016280 161 KALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLASS-- 237 (392)
Q Consensus 161 kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~~-- 237 (392)
...-.|+-+++..+.+ -..++..|.+-|++.++.++..|+.+|-.++.+... ....+.+..++..|+.++..
T Consensus 20 ~~~leicD~I~~~~~~-----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~ 94 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNG-----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKY 94 (148)
T ss_dssp HHHHHHHHHHHHSSHH-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCST
T ss_pred HHHHHHHHHHHcCCcc-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence 4455677777765432 233577788888999999999999999999976443 34566677889999998873
Q ss_pred ----CChHHHHHHHHHHHHHHcCC
Q 016280 238 ----EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 238 ----~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+..|+++++..|..-+...
T Consensus 95 ~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 95 LGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHc
Confidence 47899999999998876654
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.10 E-value=2.2 Score=36.58 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=59.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCC-----CCCHHHHHHHHHHHHHhhcCCc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFAS-----DPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s-----~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+..|.+-|++.++.++.+|..+|-+|++|. +.++..|.....+..|++++.. .++..|+.|++..|-+-...++
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 456667788999999999999999999995 4677777777888889988763 2578999999988887665443
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.25 E-value=6.8 Score=33.43 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=79.7
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcc-hH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASD-CS 220 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~-~~ 220 (392)
.+..+|.-..++...+.-..+.-.|+-+++..+.+.. .++..|.+-+.+.++.++..|+.+|-.++.+.... ..
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3555565544433222235566778888887654332 36678888889999999999999999998765443 34
Q ss_pred HHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHHHcCC
Q 016280 221 VVDKLGFPRLMLHLASS------EDPDVREAALRGLLELAREK 257 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~~------~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+.+..++..|+.++.. .+..|+++++..|..-+...
T Consensus 86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 56666788889988863 57899999999999887755
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=81.63 E-value=1.3 Score=37.48 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=54.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLI 170 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lv 170 (392)
+..|.+-|.+.++.++.+|..+|-+|++|. +.++..|.....+..|+.++.. .++.|+.+++..|-+-.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 556667788999999999999999999995 5677666666667777777654 57899999988776654
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.95 E-value=5.7 Score=36.17 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred CHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chH
Q 016280 142 GLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCS 220 (392)
Q Consensus 142 ~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~ 220 (392)
-+..+|.-..++...+.-....-.|+-+++..+.+.. .++..|.+-|.+.++.++..|+.+|-.++.+... ...
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3455665544433222234556677778876554432 3567788889999999999999999999865433 234
Q ss_pred HHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHHHcCC
Q 016280 221 VVDKLGFPRLMLHLAS-SEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 221 ~l~~~G~v~~Lv~LL~-~~d~~v~E~aL~aL~~L~~~~ 257 (392)
.+.+..++..|+.++. ..+..|+++++..|...+...
T Consensus 83 eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 83 EVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4555567777777775 467889999998888776544
No 141
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.19 E-value=11 Score=42.31 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCcccHH-HHHHcChHHHHHHhhcCC---CHH--HHHHHHHHHHHHhhcCCcchHHHHhcCc
Q 016280 154 PDVTVRTKALGAISSLIRHNKPGIE-AFRLANGYAALRDALGSE---SVK--FQRKALNLIQYLLNENASDCSVVDKLGF 227 (392)
Q Consensus 154 ~~~~vr~kAl~ALS~lvR~~~~~~~-~f~~~gGl~~L~~lL~s~---d~k--l~~kA~~lLs~L~~~~~~~~~~l~~~G~ 227 (392)
.+-.....++||++++...-.+..+ .| -..-++.|..+...+ +.+ ++...+|+++....--..+.+.+ ..+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~-Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~v 567 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRF-LVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTV 567 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccch-HHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHH
Confidence 4567889999999999854433222 33 345667777666433 233 44444566654432100011111 123
Q ss_pred hHHHHHhhcCCChHHHHHHHHHHHHHHcCCChh
Q 016280 228 PRLMLHLASSEDPDVREAALRGLLELAREKADG 260 (392)
Q Consensus 228 v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~~~~~ 260 (392)
+..|++.+...+..+++.|..|+..++++|...
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677889999999999999999998753
No 142
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.60 E-value=18 Score=38.09 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=102.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH--HHcCCHHHHHHhhC--------CCC-CHHHHHHHHHHHHHh
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLV--MEANGLEPLLSNFA--------SDP-DVTVRTKALGAISSL 169 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~v--l~~g~l~~Ll~LL~--------s~~-~~~vr~kAl~ALS~l 169 (392)
.+.|+.-|-++.=++|--|+-.|..+..-....-... ...+..-.|+-.|. +|. =.-||.-|..+|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 3456666677788899989888887664322110000 00022333333332 221 136999999999999
Q ss_pred hcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHH-hcCchHHHHHhhcCCChHHHHHHHH
Q 016280 170 IRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVD-KLGFPRLMLHLASSEDPDVREAALR 248 (392)
Q Consensus 170 vR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~-~~G~v~~Lv~LL~~~d~~v~E~aL~ 248 (392)
++-+.. ...+..|+..+....=.+|--++-.|.|+ .+ .+. =.++++.++..|.+.|.+||..|+.
T Consensus 256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D------LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE------FVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG------GCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH------HHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 776654 34555555555667778888888899999 11 111 1366788888999999999999999
Q ss_pred HHHHHHcCCChhhhhhhhhhHHHHHHHHHHHHhhhcCCC
Q 016280 249 GLLELAREKADGSAIKLAEDNEKLKQLLGERIKGISLMS 287 (392)
Q Consensus 249 aL~~L~~~~~~~~~~~~~~~~~~L~~~L~~~~~~i~~~~ 287 (392)
+|.-++ .+ .....+...|=..+.+++.++
T Consensus 322 tLiPIA--~p--------~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 322 LLCHFP--IT--------DSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHTTSC--CS--------STHHHHHHHHHHHHHTCCSCC
T ss_pred Hhhhhc--ch--------hhHHHHHHHHHHHhhhhcccc
Confidence 999888 22 223455555555665555443
No 143
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=72.63 E-value=85 Score=31.97 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHh
Q 016280 155 DVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHL 234 (392)
Q Consensus 155 ~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~L 234 (392)
+...++-|..-|+...+++|..+.. ++..+..+....+..+|..|..-|-.+|.+ +... .++..|++|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence 5789999999999999999876654 678899999999999999999888888865 3222 346688999
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCCh
Q 016280 235 ASSEDPDVREAALRGLLELAREKAD 259 (392)
Q Consensus 235 L~~~d~~v~E~aL~aL~~L~~~~~~ 259 (392)
|.+++..-...+-++|.+|...++.
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk 133 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAK 133 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChH
Confidence 9999888777777777777776653
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=71.62 E-value=8.6 Score=34.65 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=63.7
Q ss_pred HHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHHHHHhhc-CCC
Q 016280 162 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRLMLHLAS-SED 239 (392)
Q Consensus 162 Al~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~Lv~LL~-~~d 239 (392)
..-.|.-+++..+.+.+ .++..|.+-|.+.++.++..|+.+|-.++.+... ....+.+..++..|+.++. ..+
T Consensus 25 ~~leicd~i~~~~~~~k-----~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~ 99 (220)
T 1dvp_A 25 SILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPH 99 (220)
T ss_dssp HHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhhcCCCcCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCc
Confidence 45567778876654333 3566778888899999999999999999876433 2344555567777777765 456
Q ss_pred hHHHHHHHHHHHHHHcC
Q 016280 240 PDVREAALRGLLELARE 256 (392)
Q Consensus 240 ~~v~E~aL~aL~~L~~~ 256 (392)
..|+++++..+..-+..
T Consensus 100 ~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 100 ENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888877766543
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=69.21 E-value=14 Score=31.66 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=64.9
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCCc-chHHHHhcCchHH-HHHhhc
Q 016280 160 TKALGAISSLIRHNKPGIEAFRLANGYAALRDALG-SESVKFQRKALNLIQYLLNENAS-DCSVVDKLGFPRL-MLHLAS 236 (392)
Q Consensus 160 ~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~-s~d~kl~~kA~~lLs~L~~~~~~-~~~~l~~~G~v~~-Lv~LL~ 236 (392)
....-.|+-+++..+.+. ..++..|.+-|+ +.++.++..|+.+|-.++.+... ....+.+..++.. |+.++.
T Consensus 34 w~~~leicD~I~~~~~~~-----k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~ 108 (157)
T 1elk_A 34 WALNMEICDIINETEEGP-----KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTIL 108 (157)
T ss_dssp HHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHhCCCccH-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhc
Confidence 344456777777654333 235667888887 48899999999999999876433 3445666678887 788774
Q ss_pred ---CCChHHHHHHHHHHHHHHcC
Q 016280 237 ---SEDPDVREAALRGLLELARE 256 (392)
Q Consensus 237 ---~~d~~v~E~aL~aL~~L~~~ 256 (392)
.++..|+++++..|..-+..
T Consensus 109 ~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 109 PKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Confidence 23568999999988876653
No 146
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=61.81 E-value=1.1e+02 Score=30.15 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHH--------h
Q 016280 141 NGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYL--------L 212 (392)
Q Consensus 141 g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L--------~ 212 (392)
+.++.++.+ ..+.+..+|+-.+.-|.-.+...... ....++.|..+|.+.+..+.+++..+...+ +
T Consensus 63 ~fl~~il~f-~~d~~~~vRk~~a~FieEa~~~~~el-----~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAF-QADKSIEVRKFVIGFIEEACKRDIEL-----LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-ccCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888887 45568899999988888877643322 234667888888888888888777654444 4
Q ss_pred hcCCcc---hHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 213 NENASD---CSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 213 ~~~~~~---~~~l~~~-G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
...... .+....+ .+-..++.++.+.+..++-.|+..+..++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 332211 2223333 23345677788899999999998888865
No 147
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=61.33 E-value=10 Score=39.80 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=84.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHH
Q 016280 99 GGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIE 178 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~ 178 (392)
..+..++..+..+.=++|-.+.-.|..+ .....+ + .++++.++.-|.. .|..||.-|+.+|.-++ .+....
T Consensus 263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--L-d~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA--~p~~l~ 333 (800)
T 3oc3_A 263 DIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--K-DGLCRKLVSLLSS-PDEDIKLLSAELLCHFP--ITDSLD 333 (800)
T ss_dssp CHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--H-HHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC--CSSTHH
T ss_pred HHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--H-HHHHHHHHhhcCC-cccHHHHHHHHHhhhhc--chhhHH
Confidence 3344444444566666666666666655 111111 1 2345555555444 57889999999998888 232222
Q ss_pred HHHHcChHHHHHHhhcC-CC-HHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 179 AFRLANGYAALRDALGS-ES-VKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 179 ~f~~~gGl~~L~~lL~s-~d-~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
. -+..|-.+|.. +| .--......+|+.|+...... ......||.|..++++.-..||..++++|..+.
T Consensus 334 ~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 334 L-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp H-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred H-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 2 23333444433 22 333445677888888765321 112378899999999999999999999998766
No 148
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=60.31 E-value=71 Score=29.38 Aligned_cols=128 Identities=16% Similarity=0.065 Sum_probs=79.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHH-hhcCCCHHHHHHHHHHHHHHhh-cCCcchHHH
Q 016280 145 PLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRD-ALGSESVKFQRKALNLIQYLLN-ENASDCSVV 222 (392)
Q Consensus 145 ~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~-lL~s~d~kl~~kA~~lLs~L~~-~~~~~~~~l 222 (392)
.|...|-.+...+||.-|++.|..+ + . ....++.|.. +-..++=+|+.-++.++..++. .+++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~---~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S---K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T---T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c---C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence 3444444445679999999988877 3 1 1235666776 5556678999999999999985 44442
Q ss_pred HhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC-----CCh----hhhhhhhhhHHHHHHHHHHHHhhhcCCChhh
Q 016280 223 DKLGFPRLMLHLASSEDPDVREAALRGLLELARE-----KAD----GSAIKLAEDNEKLKQLLGERIKGISLMSPED 290 (392)
Q Consensus 223 ~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~-----~~~----~~~~~~~~~~~~L~~~L~~~~~~i~~~~~ed 290 (392)
.++.+.....+++..+|..|...+.--+.. ++. .......++..-++.-+..-+.+|.+-+++-
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 566777888899999998887665321111 110 0111223444555555666666666654443
No 149
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=59.30 E-value=66 Score=27.24 Aligned_cols=90 Identities=17% Similarity=0.295 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc-----C-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280 73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLK-----N-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL 146 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~-----s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L 146 (392)
=.+...|..+...+...+....|.+.|.+..+-..|. + ++..||..-..+|.++ |--++.+.+. ++...
T Consensus 35 ~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~S-glGkv 109 (145)
T 2xpp_A 35 TGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTS-GVGKI 109 (145)
T ss_dssp CHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHH-CHHHH
T ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcC-CCCcc
Confidence 4677889999999999999999999999999877775 2 5789999999999887 4335555565 45555
Q ss_pred HHhhCCC--CCHHHHHHHHHHHH
Q 016280 147 LSNFASD--PDVTVRTKALGAIS 167 (392)
Q Consensus 147 l~LL~s~--~~~~vr~kAl~ALS 167 (392)
+-.+... ..++.|+.|-.-|.
T Consensus 110 v~~l~k~~~et~~nk~la~~Li~ 132 (145)
T 2xpp_A 110 VYFYSINPKESKEVRASAKALVQ 132 (145)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCccCHHHHHHHHHHHH
Confidence 5444432 34567776655444
No 150
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=59.09 E-value=87 Score=35.16 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHHHHHHhhcCC----cccHHHHHHcCh
Q 016280 111 SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALGAISSLIRHN----KPGIEAFRLANG 185 (392)
Q Consensus 111 ~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ALS~lvR~~----~~~~~~f~~~gG 185 (392)
++..+|..|-..|..+-++. .+...+...|. ...+..+|--|+..|-+.++.+ +......+...-
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 47788999988887664332 23444444333 4457899999999999988653 333444445555
Q ss_pred HHHHHHhhcC---CCHHHHHHHHHHHHHHhhcC-CcchHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHHHcC
Q 016280 186 YAALRDALGS---ESVKFQRKALNLIQYLLNEN-ASDCSVVDKLGFPRLMLHLASSEDPDVREAALRGLLELARE 256 (392)
Q Consensus 186 l~~L~~lL~s---~d~kl~~kA~~lLs~L~~~~-~~~~~~l~~~G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~~~ 256 (392)
+..+...... ....++.+.+.+++.++... +.. =-.+++.|+.++.+ +...++.++.+|..|+.+
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 5555443221 45899999999999998642 211 12567888888876 566788899999988664
No 151
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=57.80 E-value=90 Score=35.07 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhhC-----CHHHHHHHHHcCCH
Q 016280 71 TPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYL--KNSHANIRAKAGEVVTTIVQN-----NPRSQQLVMEANGL 143 (392)
Q Consensus 71 ~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL--~s~~~~IR~~Aa~vLg~iaqN-----Np~~Q~~vl~~g~l 143 (392)
+.+.+..|-+.|..+-++. .+|..+...| .+.+..+|..|+.++-+.++. .+..+. .++...+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV-YLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH-HHHHHHH
Confidence 4455667766666543322 2566665544 456899999999999998754 333333 4444455
Q ss_pred HHHHHhhCC--CCCHHHHHHHHHHHHHhhcC
Q 016280 144 EPLLSNFAS--DPDVTVRTKALGAISSLIRH 172 (392)
Q Consensus 144 ~~Ll~LL~s--~~~~~vr~kAl~ALS~lvR~ 172 (392)
..+...... +.+..+|.++..+|+.+++.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 544443211 14578999999999998876
No 152
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=54.85 E-value=1.1e+02 Score=30.41 Aligned_cols=135 Identities=11% Similarity=0.101 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHc-CCHHHHHHhhCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEA-NGLEPLLSNFAS 152 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~-g~l~~Ll~LL~s 152 (392)
+--+||.|+-++-....+..+. .++ ..+.+..+..+..+..+++|+-++-..-+. ++.. .....+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~~l~------~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~-ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSSDIK------DYIEEGLGNKNITLTMLTVRILVNCFNNENWGVK-LLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGH------HHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHH-HHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchHHHHH------HHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHH-HhhCchhHHHHHHHHHH
Confidence 4458888888887777665432 233 234466889999999999999987653344 3432 234556665532
Q ss_pred C---CCHHHHHHHHHHHHHhhcCCcccHHHH-HHcChHHHHHHhhc---------CCCHHHHHHHHHHHHHHhhcCC
Q 016280 153 D---PDVTVRTKALGAISSLIRHNKPGIEAF-RLANGYAALRDALG---------SESVKFQRKALNLIQYLLNENA 216 (392)
Q Consensus 153 ~---~~~~vr~kAl~ALS~lvR~~~~~~~~f-~~~gGl~~L~~lL~---------s~d~kl~~kA~~lLs~L~~~~~ 216 (392)
. .-..--....-|++.++-|.......- .....+..+..++. ..+....-+++-+|..|+...+
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1 111112233333333333221110000 00123344555554 2467788888888888886433
No 153
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=54.09 E-value=52 Score=32.57 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc---CchHHHHHhhc-CC
Q 016280 163 LGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL---GFPRLMLHLAS-SE 238 (392)
Q Consensus 163 l~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~---G~v~~Lv~LL~-~~ 238 (392)
.+-|=++.-|...+.+-|+..+|+..+..+.+-++..+-+..+.+|....+. .+ ++.. ..+|.++..+. ++
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ks----L~~t~L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KA----LAKTPLENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GG----GGTSCCTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HH----HhhccccccchHHHHHhccCC
Confidence 3556677788889999999999999999999999999988888887766532 11 2211 34566666654 67
Q ss_pred ChHHHHHHHHHHHHHHcCCC
Q 016280 239 DPDVREAALRGLLELAREKA 258 (392)
Q Consensus 239 d~~v~E~aL~aL~~L~~~~~ 258 (392)
+.++.-.....|++.+.|..
T Consensus 338 eDdvvYSGTGFLSNVVAHKq 357 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQ 357 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCH
T ss_pred CcceEEecchHHHHHHhccc
Confidence 77777777777777776664
No 154
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=49.51 E-value=17 Score=31.01 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=53.6
Q ss_pred hHHHHHhhcC-CCHHHHHHHHHHHHHHhhCC-HHHHHHHHHcCCHHH-HHHhhCC--CCCHHHHHHHHHHHHHhhcCCc
Q 016280 101 LAPLLGYLKN-SHANIRAKAGEVVTTIVQNN-PRSQQLVMEANGLEP-LLSNFAS--DPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 101 l~~Ll~lL~s-~~~~IR~~Aa~vLg~iaqNN-p~~Q~~vl~~g~l~~-Ll~LL~s--~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
+..|.+-|.+ .++.+...|..+|-+|++|. +.++..|.....+.- |+.++.. ..+..|+.|++..|-+-...++
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 4456666664 68888889999999999995 466766665555653 6666653 2356899999999988776654
No 155
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=48.71 E-value=1.4e+02 Score=26.35 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcC-cH-------------HhhhhCCCCHHHHHHHHHHHHHhhcCCCCh
Q 016280 27 NLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQT-PE-------------QVLESQGVTPQDIEDMLDELQEHVESIDMA 92 (392)
Q Consensus 27 ~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~-~~-------------~~l~~~~~~~e~~~~aL~~L~~lve~iDnA 92 (392)
.+|+|-..||++.-+.... ...++++..+++ |. +.....-.+.+.+...+....-+++|-.--
T Consensus 4 ~LS~Elq~yf~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 4 MLPKELQLYFDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp GSCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC
T ss_pred ccCHHHHHHHHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 5788888888776655422 345566665542 21 011111225556666777777777766544
Q ss_pred HHHHHcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhhC----CHHHHHHHHHcCCHHHHHHhhC-CCCCHHHHHHHHH
Q 016280 93 NDLHSIGGLAPLLGYLKN---SHANIRAKAGEVVTTIVQN----NPRSQQLVMEANGLEPLLSNFA-SDPDVTVRTKALG 164 (392)
Q Consensus 93 ~d~~~lGgl~~Ll~lL~s---~~~~IR~~Aa~vLg~iaqN----Np~~Q~~vl~~g~l~~Ll~LL~-s~~~~~vr~kAl~ 164 (392)
-+-+-.-.+|+++.|+-+ ....+|..|+.+++.++.. ++..|..+ +..|.+.+. ...+....--|+.
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI-----~~tl~k~l~dp~~~l~t~YGAi~ 155 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRV-----LKTLKGVWMDPNRSEDSQYGALY 155 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHH-----HHHHHHHHTCTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHH-----HHHHHHHHcCCCCChHHHHHHHH
Confidence 333334468888887632 2348999999999999864 34445444 335565443 4456778888888
Q ss_pred HHHHhh
Q 016280 165 AISSLI 170 (392)
Q Consensus 165 ALS~lv 170 (392)
.|+.+-
T Consensus 156 GL~~lG 161 (196)
T 4atg_A 156 CLSILS 161 (196)
T ss_dssp HHHHHC
T ss_pred HHHHhH
Confidence 888764
No 156
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=46.75 E-value=2.4e+02 Score=28.64 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHh
Q 016280 70 VTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSN 149 (392)
Q Consensus 70 ~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~L 149 (392)
.+++-..+.++.+-.++. =.++.+.=.++-++.-|.++++.+...||.+|. ... -+..+...+.+..|+++
T Consensus 91 lD~~~Li~Ll~~il~~~~----Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~--pk~lfa~t~iidiLL~l 161 (500)
T 3vld_A 91 LNYDYLLDVVDKLVPMAD----FDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQ--PKGLFATSNIIDILLDI 161 (500)
T ss_dssp CCHHHHHHHHHHHHHHSC----HHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCS--SGGGGTTSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC----HHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccC--chhHhccChHHHHHHHH
Confidence 566665555555544332 345556666888999999999999999999998 222 34556677888999988
Q ss_pred hCC-CCCHH-HHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 150 FAS-DPDVT-VRTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 150 L~s-~~~~~-vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
+-. ++... +-.+.=.+++.++.+ .-.+..+. .+-++.|..+=.+.+..+..|-.-++.-++.
T Consensus 162 yFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril-~nnl~lL~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 162 LFDEKVENDKLITAIEKALERLSTD-ELIRRRLF-DNNLPYLVSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHH-TTTHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHH-HHhHHHHHHHhcCCCceeHHHHHHHHHHHhc
Confidence 653 34444 666666677776532 11223332 4667888877777777777777777766654
No 157
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=46.00 E-value=1.8e+02 Score=28.22 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhcCCCC-----------------hHHHHHcCChHHHHHhhcCC---C-------------------H
Q 016280 73 QDIEDMLDELQEHVESIDM-----------------ANDLHSIGGLAPLLGYLKNS---H-------------------A 113 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDn-----------------A~d~~~lGgl~~Ll~lL~s~---~-------------------~ 113 (392)
+....+|++|..+|.+.++ -+-|-+.|.+..|+.+|..+ . .
T Consensus 248 ~~v~~~L~dLi~F~~~~~~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~~~~~~~~~~~~l~~~~~~~~~ 327 (381)
T 1n4k_A 248 RSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGDGPMLRLEELGDQRHAPFR 327 (381)
T ss_dssp HHHHHHHHHHHHHHTTTSCCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC-----------------CHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhccccCccchhhHHHhcchhhhHHH
Confidence 3445667777777776542 12345678888888888543 1 1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCc
Q 016280 114 NIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNK 174 (392)
Q Consensus 114 ~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~ 174 (392)
.|-..+..+|..++++|...|..+.+. ++.+...+.. + .-|.-+|-.++.+|.
T Consensus 328 ~i~~l~Y~LL~~~~~~~r~Nq~y~ak~--~~~~q~qig~--~----~~a~d~i~~ll~nN~ 380 (381)
T 1n4k_A 328 HICRLCYRVLRHSQQDYRKNQEYIAKQ--FGFMQKQIGY--D----VLAEDTITALLHNNR 380 (381)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHHHHHCT--T----HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhCc--c----ccHHHHHHHHHhcCC
Confidence 355567888999999999999987764 5555555443 2 445666666776653
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=45.85 E-value=40 Score=28.42 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCcchHHHHhc--CchHHHHHhhcCCC
Q 016280 162 ALGAISSLIRHNKPGIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENASDCSVVDKL--GFPRLMLHLASSED 239 (392)
Q Consensus 162 Al~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~--G~v~~Lv~LL~~~d 239 (392)
.+--|+.+.++++.. .| .--+..|.+-|..++..++-||+.+|.||+...++....-... ..|+.+.+.--.++
T Consensus 31 lm~EIA~~T~~s~~~--~~--~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~d 106 (140)
T 1vdy_A 31 KLEEICDLLRSSHVS--IV--KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHSCHH--HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCC
T ss_pred HHHHHHHHHHhcchh--HH--HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 344566666654321 11 2246677888888899999999999999997765543322222 23333333322222
Q ss_pred --------hHHHHHHHHHHHHHHcCC
Q 016280 240 --------PDVREAALRGLLELAREK 257 (392)
Q Consensus 240 --------~~v~E~aL~aL~~L~~~~ 257 (392)
..||+.|=.++..|-.+.
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred cccccchhHHHHHHHHHHHHHHhCcC
Confidence 457777776666554433
No 159
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.97 E-value=1.7e+02 Score=28.39 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC-CHHHHHHhhCC
Q 016280 75 IEDMLDELQEHVESIDMANDLHSIGGLAPLL-GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN-GLEPLLSNFAS 152 (392)
Q Consensus 75 ~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll-~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g-~l~~Ll~LL~s 152 (392)
+--+||.|+-++-....+..+ ..++ ..+.+..+..+..+..+++|+-++...-+. ++... ....+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~~~l------~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~-ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSSDI------KDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVK-LLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGGGG------HHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHH-HHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChHHHH------HHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHH-HHhcchhHHHHHHHHHH
Confidence 345788888777777665443 2233 234466789999999999999987653344 34321 23345554421
Q ss_pred ----CC---CHHHHHHHHHHHHHh---hcCCcccHHHHHHcChHHHHHHhhc---------CCCHHHHHHHHHHHHHHhh
Q 016280 153 ----DP---DVTVRTKALGAISSL---IRHNKPGIEAFRLANGYAALRDALG---------SESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 153 ----~~---~~~vr~kAl~ALS~l---vR~~~~~~~~f~~~gGl~~L~~lL~---------s~d~kl~~kA~~lLs~L~~ 213 (392)
.. +..+|..+...+=|+ ....... ...+..+..++. ..+....-+++-+|..|+.
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~------~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD------LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC------TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11 233444443322222 1111111 123344555554 2477788888888888886
Q ss_pred cC
Q 016280 214 EN 215 (392)
Q Consensus 214 ~~ 215 (392)
..
T Consensus 327 ~~ 328 (362)
T 3l3f_X 327 VE 328 (362)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 160
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=43.42 E-value=2.3e+02 Score=27.27 Aligned_cols=132 Identities=12% Similarity=0.144 Sum_probs=95.6
Q ss_pred HHHhhcCCCChHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcC---CHHHHHHhhCCCCCHHH
Q 016280 82 LQEHVESIDMANDLHSIGGLAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEAN---GLEPLLSNFASDPDVTV 158 (392)
Q Consensus 82 L~~lve~iDnA~d~~~lGgl~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g---~l~~Ll~LL~s~~~~~v 158 (392)
|++++..-..|.-+...+-+..+..++..++=+|-..|...+-.+-..++..-..++..+ .+...-.||.+ ++--+
T Consensus 147 LRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVT 225 (341)
T 1upk_A 147 LRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVT 225 (341)
T ss_dssp HHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHH
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-Ccchh
Confidence 333333333344455556667777888889999999999999888877775555666654 35556666666 58889
Q ss_pred HHHHHHHHHHhhcC--CcccHHHHHH-cChHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 016280 159 RTKALGAISSLIRH--NKPGIEAFRL-ANGYAALRDALGSESVKFQRKALNLIQYLLNE 214 (392)
Q Consensus 159 r~kAl~ALS~lvR~--~~~~~~~f~~-~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~ 214 (392)
|+.++--|+-++-+ |-.....++. ..-+.+++.+|.++...+|..|-..+--++..
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 99999999998754 4434444443 45788999999999999999999888877754
No 161
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=41.40 E-value=1.5e+02 Score=24.60 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHH
Q 016280 110 NSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAAL 189 (392)
Q Consensus 110 s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L 189 (392)
++.+.|.....|++-+ ...-..|++ .+-+-+.+ ..+.-+.-++|-+-+++|+...-.......+-.+.+
T Consensus 22 nSk~~I~~LT~~a~~~-----~~~a~~Iv~-----~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f 90 (144)
T 1sz9_A 22 NSRPIITTLTKLAEEN-----ISCAQYFVD-----AIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLY 90 (144)
T ss_dssp CCHHHHHHHHHHHHHT-----GGGHHHHHH-----HHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHH
T ss_pred ccHhHHHHHHHHHHHH-----HHHHHHHHH-----HHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3455666666666553 323333433 22222222 467899999999999999876555555567777777
Q ss_pred HHhhcCCCHHHHHHHHHHHHH
Q 016280 190 RDALGSESVKFQRKALNLIQY 210 (392)
Q Consensus 190 ~~lL~s~d~kl~~kA~~lLs~ 210 (392)
.......+...|.+...++.-
T Consensus 91 ~~~~~~~d~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 91 KRTYLLVDNTTRTKLINMFKL 111 (144)
T ss_dssp HHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 777777788888887776643
No 162
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=41.23 E-value=34 Score=37.95 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=70.1
Q ss_pred CChHHHHHhhcCCC-HHHHHHHHHHHHHHhhCC-H-HHHHHHHHcCCHHHHHHhhCC-----------CCCHHHHHHHHH
Q 016280 99 GGLAPLLGYLKNSH-ANIRAKAGEVVTTIVQNN-P-RSQQLVMEANGLEPLLSNFAS-----------DPDVTVRTKALG 164 (392)
Q Consensus 99 Ggl~~Ll~lL~s~~-~~IR~~Aa~vLg~iaqNN-p-~~Q~~vl~~g~l~~Ll~LL~s-----------~~~~~vr~kAl~ 164 (392)
..+..++.+|.++. .+||..|+.+|+.+.+.. + ...+.+++ .+-..+.. ..+...|-.|+.
T Consensus 843 ~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~-----~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 843 KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIE-----RFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHH-----HHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHH-----HHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 34677788999999 999999999999999887 4 22222222 12222111 001146678899
Q ss_pred HHHHhhcCCcccH--HHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCCc
Q 016280 165 AISSLIRHNKPGI--EAFRLANGYAALRDALGSESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 165 ALS~lvR~~~~~~--~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
+||+++..+|... -.+ --.-+..|.....++.+ ++.-+-..|+.+-..+.+
T Consensus 918 gL~AlV~a~Py~vP~P~w-~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 918 GLGAIISAFPYVFPLPPW-IPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp HHHHHHTTCSCCSSCCTH-HHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred HHHHHHhhCCCCCCCCcc-cHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 9999999887553 222 12344555555555444 777777778887654433
No 163
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=39.65 E-value=2e+02 Score=26.44 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHH-hhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHh
Q 016280 114 NIRAKAGEVVTTI-VQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANGYAALRDA 192 (392)
Q Consensus 114 ~IR~~Aa~vLg~i-aqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~l 192 (392)
+.|.....-+-.+ ..++|..-. ..++.++.+ ..+++..+|+-.+.-|.-.++..+. +....++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~~-----l~~~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKVE-----LLPHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 3444444444442 333453322 345667775 4557889999888888877755442 344567788888
Q ss_pred hcCCCHHHHHHHHHHHHHH--------hhcCCc---chHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHHH
Q 016280 193 LGSESVKFQRKALNLIQYL--------LNENAS---DCSVVDKL-GFPRLMLHLASSEDPDVREAALRGLLELA 254 (392)
Q Consensus 193 L~s~d~kl~~kA~~lLs~L--------~~~~~~---~~~~l~~~-G~v~~Lv~LL~~~d~~v~E~aL~aL~~L~ 254 (392)
+.++++.+.+++..+...+ +..... ..+....+ .+=..++.++.+.+..++-+|+..+..++
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 8888888888887755444 432221 12333333 23356777888999999999999888865
No 164
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.97 E-value=64 Score=29.59 Aligned_cols=167 Identities=8% Similarity=0.060 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHhhCCccHHHHHH-HHHHHhcCcHHhhhhCCCCHHHHHHHHHHHHHhhcCCCChHHHHHcCChHHHH
Q 016280 27 NLSEEDRRWFMEAMQSQTVDVIKRMK-EITLVMQTPEQVLESQGVTPQDIEDMLDELQEHVESIDMANDLHSIGGLAPLL 105 (392)
Q Consensus 27 ~~s~E~~~~L~~Al~~~~~D~~~~mk-~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll 105 (392)
.|++|+..=+..++.... +..+.+- -+.+++.. . . .+--++|.++-++-....+..|.. ++
T Consensus 34 ~ls~~el~~l~~~l~~l~-~~~~~~~~~~~ki~~~----W-----P--~~fP~lDllRl~~~~~~~~~~l~~------~l 95 (253)
T 3gae_A 34 TFDDEILAQIGGALHDID-ESWELLLSFANTIRSN----W-----E--IKTPAYDIVRLIVKKLPYSSDIKD------YI 95 (253)
T ss_dssp CSCHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHH----C-----S--CCHHHHHHHHHHGGGCSCGGGGHH------HH
T ss_pred CCCHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHh----C-----C--ccchHHHHHHHHHcCCchHHHHHH------HH
Confidence 789998887777664321 1111111 11122211 0 1 234578888877777766654433 33
Q ss_pred -HhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCC-------CCHHHHHHHHHHHHHhh---cCCc
Q 016280 106 -GYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASD-------PDVTVRTKALGAISSLI---RHNK 174 (392)
Q Consensus 106 -~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~-------~~~~vr~kAl~ALS~lv---R~~~ 174 (392)
..+.+.++..+..++.+++|+.++...-++.+........++..+.+. .+..+|..+...+=|+. ....
T Consensus 96 ~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~ 175 (253)
T 3gae_A 96 EEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 175 (253)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 234466788999999999999988763445444332344455443221 13456655544443332 2211
Q ss_pred ccHHHHHHcChHHHHHHhhcC---------CCHHHHHHHHHHHHHHhhcCCc
Q 016280 175 PGIEAFRLANGYAALRDALGS---------ESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 175 ~~~~~f~~~gGl~~L~~lL~s---------~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
. .......+..++.. .+....-+++-++..|+..++.
T Consensus 176 ~------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 176 S------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp S------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGG
T ss_pred c------hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHH
Confidence 1 12233444444442 3667778888888888865443
No 165
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=33.98 E-value=2e+02 Score=24.08 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=46.3
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCHHHHHHhhCC---CC------C--HHHHHHHHHHHHH
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQN-NPRSQQLVMEANGLEPLLSNFAS---DP------D--VTVRTKALGAISS 168 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqN-Np~~Q~~vl~~g~l~~Ll~LL~s---~~------~--~~vr~kAl~ALS~ 168 (392)
++.|.+-|++..+.++-.|..+|-.++.+ ++.++..+.+.- .+|+.+.+ .+ + ..||.+|--+++.
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 55677778888888999999999999976 667777665542 23443331 11 1 5788888777776
Q ss_pred hhc
Q 016280 169 LIR 171 (392)
Q Consensus 169 lvR 171 (392)
|--
T Consensus 128 l~d 130 (140)
T 1vdy_A 128 IFS 130 (140)
T ss_dssp HTC
T ss_pred HhC
Confidence 643
No 166
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=33.64 E-value=24 Score=23.15 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHhhC
Q 016280 29 SEEDRRWFMEAMQSQ 43 (392)
Q Consensus 29 s~E~~~~L~~Al~~~ 43 (392)
+.+|+.||++.|++.
T Consensus 17 ~~~R~~WLq~~L~~v 31 (39)
T 1bwx_A 17 SMERVEWLRKKLQDV 31 (39)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 678999999988763
No 167
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=33.18 E-value=1e+02 Score=30.13 Aligned_cols=72 Identities=14% Similarity=0.377 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCcHHhhhhCCCCHHHHHHHHHHHH
Q 016280 4 DGPNWDGLLKWSLAHSDGTRSTRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTPEQVLESQGVTPQDIEDMLDELQ 83 (392)
Q Consensus 4 ~~~~~~gLLkwsi~~sd~~~~~~~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~~~~l~~~~~~~e~~~~aL~~L~ 83 (392)
..+.|..||+-=++. +.||.|+.+|+.+.|-++..+++ +|-..+..+ .-++.+.+|+..+.+.+.
T Consensus 22 ~~~t~~~il~~l~~g-------~~Ls~eEa~~~~~~i~~G~~~~~-QiaAfL~Al-------r~kGet~eEi~g~~~am~ 86 (377)
T 3r88_A 22 SVPSWPQILGRLTDN-------RDLARGQAAWAMDQIMTGNARPA-QIAAFAVAM-------TMKAPTADEVGELAGVML 86 (377)
T ss_dssp --CCHHHHHHHHHTT-------CCCCTTHHHHHHHHHHTTCSCHH-HHHHHHHHH-------HHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCC-------CCCCHHHHHHHHHHHHCCCCCHH-HHHHHHHHH-------HHhCcCHHHHHHHHHHHH
Confidence 346788888776643 56888898999888888876663 444444332 234678999999999999
Q ss_pred HhhcCCC
Q 016280 84 EHVESID 90 (392)
Q Consensus 84 ~lve~iD 90 (392)
+....++
T Consensus 87 ~~~~~v~ 93 (377)
T 3r88_A 87 SHAHPLP 93 (377)
T ss_dssp HHSCCCC
T ss_pred HhCCcCC
Confidence 9887664
No 168
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=32.25 E-value=24 Score=22.55 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhh
Q 016280 30 EEDRRWFMEAMQS 42 (392)
Q Consensus 30 ~E~~~~L~~Al~~ 42 (392)
-+|+.||++.|++
T Consensus 18 ~~R~~WLq~~l~~ 30 (34)
T 1et1_A 18 MERVEWLRKKLQD 30 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4789999999876
No 169
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.83 E-value=2.4e+02 Score=27.38 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh-HHHHHHhh-
Q 016280 116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG-YAALRDAL- 193 (392)
Q Consensus 116 R~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG-l~~L~~lL- 193 (392)
|.-+..++.-++-+.+.. +.+..++.-......+..+.-++.+++|+..+.......+ .... ...+...+
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll-~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL-ESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH-TSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHH-hcchhHHHHHHHHH
Confidence 677888888887765422 2233444332223567899999999999987654333333 2221 22233322
Q ss_pred ---c----CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc---------CCChHHHHHHHHHHHHHHcCC
Q 016280 194 ---G----SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---------SEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 194 ---~----s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~---------~~d~~v~E~aL~aL~~L~~~~ 257 (392)
. +.+..++.-++.++.+++-.....+. +..++..++.++. ..|.+..-.+|-||++|+...
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 12467888888998888742111000 0223345555555 258889999999999998654
Q ss_pred C
Q 016280 258 A 258 (392)
Q Consensus 258 ~ 258 (392)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.86 E-value=2.7e+02 Score=27.67 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHcCh-HHHHHHhhc
Q 016280 116 RAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLANG-YAALRDALG 194 (392)
Q Consensus 116 R~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~gG-l~~L~~lL~ 194 (392)
|.-+..++.-++-+.+.. +.|..++.-......+..+.-++.+++|+..+.......+ .... ...+...+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll-~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL-ESNQVYKSIFETID 314 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH-TSHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHh-hCchhHHHHHHHHH
Confidence 667888888887765532 1233344332223567889999999999987654334333 3221 334444332
Q ss_pred --------CCCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhc---------CCChHHHHHHHHHHHHHHcCC
Q 016280 195 --------SESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLAS---------SEDPDVREAALRGLLELAREK 257 (392)
Q Consensus 195 --------s~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~---------~~d~~v~E~aL~aL~~L~~~~ 257 (392)
+.+..++.-++.++.+++-.....+. +..++..++.++. ..|.+..-.+|-||++|+...
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 12467888888999888742111000 0223345555554 247888899999999998644
No 171
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=25.36 E-value=99 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCcH----------HhhhhCCCCHHHHHHHHH
Q 016280 49 KRMKEITLVMQTPE----------QVLESQGVTPQDIEDMLD 80 (392)
Q Consensus 49 ~~mk~~~~~l~~~~----------~~l~~~~~~~e~~~~aL~ 80 (392)
+++..+...|++|. .-|+.+|.+.++++.||.
T Consensus 11 ~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 11 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34555555665552 346788899999998875
No 172
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=24.65 E-value=60 Score=35.96 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=66.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHHHHhhCC---CCCHHHHHHHHHHHH--HhhcCCcc
Q 016280 101 LAPLLGYLKNSHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPLLSNFAS---DPDVTVRTKALGAIS--SLIRHNKP 175 (392)
Q Consensus 101 l~~Ll~lL~s~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~Ll~LL~s---~~~~~vr~kAl~ALS--~lvR~~~~ 175 (392)
+.-|+.+-.|..++||..|-.++-++.+--+.+...+ +|.+++.|.. +.+....+-|+|.|. .+.+- -
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~--~ 207 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK--L 207 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH--G
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH--H
Confidence 3445556668899999999999999998777666544 6677777765 445455677777655 11110 1
Q ss_pred cHHHHHHcChHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 016280 176 GIEAFRLANGYAALRDALGSESVKFQRKALNLIQYLLN 213 (392)
Q Consensus 176 ~~~~f~~~gGl~~L~~lL~s~d~kl~~kA~~lLs~L~~ 213 (392)
..+......-++.|+++...+.+.++.-+-.+...+..
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~ 245 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVI 245 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHT
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh
Confidence 11122234457778888777666666555555444443
No 173
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=24.02 E-value=3.2e+02 Score=22.89 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHcChHHHHHHhhcC------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHH
Q 016280 159 RTKALGAISSLIRHNKPGIEAFRLANGYAALRDALGS------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLML 232 (392)
Q Consensus 159 r~kAl~ALS~lvR~~~~~~~~f~~~gGl~~L~~lL~s------~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv 232 (392)
+.+-+--+...++. ..-+..|++.|.+.++...|.. ++..+|+....+|..| |.+++.+.+.|+-+.++
T Consensus 37 KlklL~~V~~~l~k-~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~ 111 (145)
T 2xpp_A 37 KIENVEEISDILMS-KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVY 111 (145)
T ss_dssp HHHHHHHHHHHHTC-TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHH
T ss_pred HHhhHHHHHHHHhh-HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchh
Confidence 33444444455543 3468899999999999999985 4588888887777766 56688899999888888
Q ss_pred HhhcCCC--hHHHHHHHHHHHH
Q 016280 233 HLASSED--PDVREAALRGLLE 252 (392)
Q Consensus 233 ~LL~~~d--~~v~E~aL~aL~~ 252 (392)
-+-++++ +..+..|-+.+..
T Consensus 112 ~l~k~~~et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 112 FYSINPKESKEVRASAKALVQK 133 (145)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHH
T ss_pred hhhcCCccCHHHHHHHHHHHHH
Confidence 7776544 4566666655543
No 174
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=22.38 E-value=1e+02 Score=27.66 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCc-HHhhhhCCCCHHHHHHHHHHHHHhhc
Q 016280 24 STRNLSEEDRRWFMEAMQSQTVDVIKRMKEITLVMQTP-EQVLESQGVTPQDIEDMLDELQEHVE 87 (392)
Q Consensus 24 ~~~~~s~E~~~~L~~Al~~~~~D~~~~mk~~~~~l~~~-~~~l~~~~~~~e~~~~aL~~L~~lve 87 (392)
+.++|++|+|+=|-+..+....+.=-.++.+..-..+. .....+++++.|+...+.+.++.+.+
T Consensus 125 ~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd 189 (209)
T 4gfq_A 125 AFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETD 189 (209)
T ss_dssp ECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999887766654322211122222211111 11223456788888888777777655
No 175
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=22.31 E-value=3.7e+02 Score=23.21 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHcCChHHHHHhhc-----C-CCHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCHHHH
Q 016280 73 QDIEDMLDELQEHVESIDMANDLHSIGGLAPLLGYLK-----N-SHANIRAKAGEVVTTIVQNNPRSQQLVMEANGLEPL 146 (392)
Q Consensus 73 e~~~~aL~~L~~lve~iDnA~d~~~lGgl~~Ll~lL~-----s-~~~~IR~~Aa~vLg~iaqNNp~~Q~~vl~~g~l~~L 146 (392)
=.+...|......+...+....|++.|++..+-..|. + ++-.||.....+|..+ |--++.+.+. +|...
T Consensus 50 l~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~S-glGkv 124 (170)
T 3nfq_A 50 MQKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKES-GLGRV 124 (170)
T ss_dssp CHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHH-SHHHH
T ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhC-CCCce
Confidence 3577889999999999999999999999999877775 2 5789999999999876 4334545555 55555
Q ss_pred HHhhCCC--CCHHHHHHHHHHHHHhhc
Q 016280 147 LSNFASD--PDVTVRTKALGAISSLIR 171 (392)
Q Consensus 147 l~LL~s~--~~~~vr~kAl~ALS~lvR 171 (392)
|-.+... ..++.|+.|-.-|..-.|
T Consensus 125 V~~l~k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 125 VIFYTKSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred eeehhcCCcccHHHHHHHHHHHHHHHH
Confidence 5444432 346777777666665444
No 176
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.06 E-value=1.8e+02 Score=24.51 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=45.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHc-ChHH-HHHHhhcC---CCHHHHHHHHHHHHHHhhcCCc
Q 016280 143 LEPLLSNFASDPDVTVRTKALGAISSLIRHNKPGIEAFRLA-NGYA-ALRDALGS---ESVKFQRKALNLIQYLLNENAS 217 (392)
Q Consensus 143 l~~Ll~LL~s~~~~~vr~kAl~ALS~lvR~~~~~~~~f~~~-gGl~-~L~~lL~s---~d~kl~~kA~~lLs~L~~~~~~ 217 (392)
+..|.+-|....++.++..|+.-|-.++.|+......-+.. .-+. .|++++.. .+.+|+.|++.+|.......+.
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 44455555533456666677777778888765543332222 2222 35666653 3468999999999999866544
No 177
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=20.16 E-value=4.2e+02 Score=22.83 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=58.9
Q ss_pred cccHHHHHHcChHHHHHHhhcC------CCHHHHHHHHHHHHHHhhcCCcchHHHHhcCchHHHHHhhcCC--ChHHHHH
Q 016280 174 KPGIEAFRLANGYAALRDALGS------ESVKFQRKALNLIQYLLNENASDCSVVDKLGFPRLMLHLASSE--DPDVREA 245 (392)
Q Consensus 174 ~~~~~~f~~~gGl~~L~~lL~s------~d~kl~~kA~~lLs~L~~~~~~~~~~l~~~G~v~~Lv~LL~~~--d~~v~E~ 245 (392)
..-+..|++.|.+.++...|.. ++..+|+....+|..| |...+.+.+.|+-..++-+-+++ .+..+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 4567889999999999999885 4578999888777766 56678888889888777776654 4567777
Q ss_pred HHHHHHHHHc
Q 016280 246 ALRGLLELAR 255 (392)
Q Consensus 246 aL~aL~~L~~ 255 (392)
|-..+..-+.
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 7766665443
Done!