BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016281
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 100 DGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
DG + GE+L V +V+ G K++ +GHS GGL +RY A
Sbjct: 56 DGPNGRGEQLLAYVKTVLAAT-GATKVNLVGHSQGGLTSRYVAA 98
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 100 DGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
DG + GE+L V +V+ G K++ +GHS GGL +RY A
Sbjct: 56 DGPNGRGEQLLAYVKTVLAAT-GATKVNLVGHSQGGLTSRYVAA 98
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 100 DGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
DG + GE+L V V+ G K++ IGHS GGL +RY A
Sbjct: 55 DGPNGRGEQLLAYVKQVLAA-TGATKVNLIGHSQGGLTSRYVAA 97
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 100 DGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
DG + GE+L V V+ G K++ IGHS GGL +RY A
Sbjct: 56 DGPNGRGEQLLAYVKQVLAA-TGATKVNLIGHSQGGLTSRYVAA 98
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 100 DGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
DG + GE+L V V+ G K++ IGHS GGL +RY A
Sbjct: 56 DGPNGRGEQLLAYVKQVLAA-TGATKVNLIGHSQGGLTSRYVAA 98
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 54 THLVVMVNGIIGSAQNW----SYAAKQFCCKYPEDLIVHCSERNYSTLTF-DGVDVMGER 108
T LVV+V+G++GS +W S+ A+ C DL H + F + V+ + +
Sbjct: 16 TPLVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTNPERHCDNFAEAVEXIEQT 75
Query: 109 LAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIAR 144
+ V S + + +G+SLGG + + +A+
Sbjct: 76 VQAHVTSEV-------PVILVGYSLGGRLIXHGLAQ 104
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 36 FDMQVQTIGDGNGDGPTPTHLVVMVNGIIGSAQNWSYAAKQFCCKYPEDLIVHCSERNYS 95
+++ QT + + + P +V+V+G+ GS N A+ + I+ RN+
Sbjct: 3 LNIRAQTAQNQHNNSP-----IVLVHGLFGSLDNLGVLARDLVNDHN---IIQVDVRNHG 54
Query: 96 TLTFDGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGG--LVARYAIA-----RLYER 148
+ V + +A++++ + + K +FIGHS+GG ++A A+A +L
Sbjct: 55 LSPREPV-MNYPAMAQDLVDTLDAQ-QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAI 112
Query: 149 DVTEASHH 156
D+ +H
Sbjct: 113 DIAPVDYH 120
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 99 FDGVDVMGE-RLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIARLY 146
F+ + V+ E A +++ +K P V+ I +GHS GG+VA +A LY
Sbjct: 93 FENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVAS-MLAGLY 140
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 74 AKQFCCKYPEDLIVHCSERNYSTLTFDGVDVMG-----------ERLAEEVISVIKRHPG 122
K FC E I ++ Y + D V ++LA ++++R G
Sbjct: 54 GKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALLERL-G 112
Query: 123 VQKISFIGHSLGGLVA-RYAIARLYERDV 150
V + S IGHS GG +A RYA+ LY R V
Sbjct: 113 VARASVIGHSXGGXLATRYAL--LYPRQV 139
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 102 VDVMGERLAEEVISVI---KRHPGVQKISFIGHSLGGLVARYAIARLYERD 149
+D GE E V +V+ K++P K++ GHSLGG A LY+R+
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPS-YKVAVTGHSLGGATALLCALDLYQRE 161
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 36 FDMQVQTIGDGNGDGPTPTHLVVMVNGIIGSAQNWSYAAKQFCCKYPEDLIVHCSERNYS 95
+++ QT + + + P +V+V+G+ GS N A+ + I+ RN+
Sbjct: 3 LNIRAQTAQNQHNNSP-----IVLVHGLFGSLDNLGVLARDLVNDHN---IIQVDVRNHG 54
Query: 96 TLTFDGV---DVMGERLAEEVISVIKRHPGVQKISFIGHSLGG--LVARYAIA-----RL 145
+ V M + L + + ++ + K +FIGHS+GG ++A A+A +L
Sbjct: 55 LSPREPVMNYPAMAQDLVDTLDAL-----QIDKATFIGHSMGGKAVMALTALAPDRIDKL 109
Query: 146 YERDVTEASHH 156
D+ +H
Sbjct: 110 VAIDIAPVDYH 120
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 102 VDVMGERLAEEVISVI---KRHPGVQKISFIGHSLGGLVARYAIARLYERD 149
+D GE E V +V+ K++P K++ GHSLGG A LY+R+
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPS-YKVAVTGHSLGGATALLCALDLYQRE 161
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 102 VDVMGERLAEEVISVI---KRHPGVQKISFIGHSLGGLVARYAIARLYERD 149
+D GE E V +V+ K++P K++ GHSLGG A LY+R+
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPS-YKVAVTGHSLGGATALLCALDLYQRE 161
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 99 FDGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
D +V GE+L ++V ++ G K++ IGHS GG RY A
Sbjct: 50 LDTSEVRGEQLLQQVEEIVALS-GQPKVNLIGHSHGGPTIRYVAA 93
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 99 FDGVDVMGE-RLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIARLY 146
F+ + V+ E A +++ +K P V+ I +GH+ GG+VA +A LY
Sbjct: 93 FENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVAS-MLAGLY 140
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 66 SAQNWSYAAKQFCCKYPEDLIVHCSERNYSTLTFDGVDVMGERLAEEVISVIKRHPGVQK 125
S +NW F K D+ C + T ++ V + L ++V ++ HP +
Sbjct: 85 SIENW-IGNLNFDLKEINDICSGCRGHDGFTSSWRSV---ADTLRQKVEDAVREHPDY-R 139
Query: 126 ISFIGHSLGGLVARYAIARL----YERDV 150
+ F GHSLGG +A A A L Y+ DV
Sbjct: 140 VVFTGHSLGGALATVAGADLRGNGYDIDV 168
>pdb|2RAU|A Chain A, Crystal Structure Of A Putative Lipase (Np_343859.1) From
Sulfolobus Solfataricus At 1.85 A Resolution
Length = 354
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 111 EEVISVIKRHPGVQKISFIGHSLGGLVARYAIARLYERDV 150
+EV+S IKR G ++I G S GG+ A + ++ D+
Sbjct: 131 KEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDI 170
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 99 FDGVDVMGE-RLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIARLY 146
F+ + V+ E A +++ +K P V+ I +GH+ GG+VA +A LY
Sbjct: 93 FENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVAS-MLAGLY 140
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 100 DGVDVMGERLAE--EVISVIKRHPGVQKISFIGHSLGGLVARYA------IARLYERDVT 151
+ V V+G ++A+ +++ +P K+ IGHSLG VA A ++R+ D
Sbjct: 146 NNVRVVGAQVAQMLDILLTEYSYP-PSKVHLIGHSLGAHVAGEAGSKTPGLSRITGLDPV 204
Query: 152 EASHHASG-ECRVDESEED 169
EAS ++ E R+D S+ D
Sbjct: 205 EASFESTPEEVRLDPSDAD 223
>pdb|3QMW|A Chain A, Redj With Peg Molecule Bound In The Active Site
pdb|3QMW|B Chain B, Redj With Peg Molecule Bound In The Active Site
pdb|3QMW|C Chain C, Redj With Peg Molecule Bound In The Active Site
pdb|3QMW|D Chain D, Redj With Peg Molecule Bound In The Active Site
Length = 259
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 20/111 (18%)
Query: 91 ERNYSTLTFDGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIARLYERDV 150
ER Y T+ E LAE V ++ H + GHS+G L+A L R
Sbjct: 73 ERPYDTM---------EPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGA 123
Query: 151 TEASH---------HASGECRVDESEEDSCQKDNLKGKIAGLEPVNFITCA 192
H H G+ R D + D+ ++ ++ + GL+ + + A
Sbjct: 124 PRPRHLFVSGSRAPHLYGD-RADHTLSDTALREVIR-DLGGLDDADTLGAA 172
>pdb|3FLE|A Chain A, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis.
pdb|3FLE|B Chain B, Se_1780 Protein Of Unknown Function From Staphylococcus
Epidermidis
Length = 249
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 111 EEVISVIKRHPGVQKISFIGHSLG 134
+EV+S +K G+Q+ +F+GHS G
Sbjct: 84 KEVLSQLKSQFGIQQFNFVGHSXG 107
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 50 GPTPTHLVVMVNGIIGSAQNWSYAAKQFCCKYPEDLIVHCSE-RNYSTLTFDGVDVMGER 108
GP ++ +G SA +W A F + ++ H S+ +DG D+ +
Sbjct: 18 GPRDAPVIHFHHGWPLSADDWD-AQLLFFLAHGYRVVAHDRRGHGRSSQVWDGHDM--DH 74
Query: 109 LAEEVISVIKRHPGVQKISFIGHSLGGL-VARYAIARLYERDVTEA 153
A++V +V+ H G+Q +GHS GG V RY +AR E V +A
Sbjct: 75 YADDVAAVVA-HLGIQGAVHVGHSTGGGEVVRY-MARHPEDKVAKA 118
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 66 SAQNWSYAAKQFCCKYPEDLIVHCSERNYSTLTFDGVDVMGERLAEEVISVIKRHPGVQK 125
S +NW F K D+ C + T ++ V + L ++V ++ HP +
Sbjct: 85 SIENW-IGNLNFDLKEINDICSGCRGHDGFTSSWRSV---ADTLRQKVEDAVREHPDY-R 139
Query: 126 ISFIGHSLGGLVARYAIARL----YERDV 150
+ F GH+LGG +A A A L Y+ DV
Sbjct: 140 VVFTGHALGGALATVAGADLRGNGYDIDV 168
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 102 VDVMGERLAEEVISVI---KRHPGVQKISFIGHSLGGLVARYAIARLYERD 149
+D GE E V +V+ K++P K++ GHSLGG LY+R+
Sbjct: 112 LDSYGEVQNELVATVLDQFKQYPS-YKVAVTGHSLGGATVLLCALDLYQRE 161
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 95 STLTFDGVDVMGERLAEEVISVIKRHPGVQKISFIGHSLGGLVARYAIA 143
S F+ +V G++L + V ++++ +K++FIGHS G L RY A
Sbjct: 63 SLSAFNSNEVRGKQLWQFVQTLLQETQ-AKKVNFIGHSQGPLACRYVAA 110
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 95 STLTFDGVDVMGERLAEEVISVIKRHPGVQKISFIGHSL-GGLVARYAIARLYERDVTEA 153
S+ +DG D+ + A++ +V+++ G +GHS GG V RY IAR ER+V++A
Sbjct: 67 SSQVWDGHDM--DHYADDAAAVVEKL-GTHGAMHVGHSTGGGEVVRY-IARHGERNVSKA 122
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 273 RFDHIVGWSTSSLRHPKELPK--RRHLKRVDKYKHIVNVETTKAASSQREVRSENMANKS 330
R +++ W T S+R EL K R L RV K ++ + R++ E++ K
Sbjct: 377 RIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQK- 435
Query: 331 ETTDMEEEMLR 341
E + +EM R
Sbjct: 436 EFVEKVKEMFR 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,565,412
Number of Sequences: 62578
Number of extensions: 477984
Number of successful extensions: 1188
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 27
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)