BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016283
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Query: 11 DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
D + + LPPGFRF+PTDEEL+ YL K F IAE+DL + +PW LP+ A G
Sbjct: 13 DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG 72
Query: 71 EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
EKEWYFFS RDRKYP G R NR G+GYWKATG D+ + + G +G+KK LVFY G+A
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKA 130
Query: 131 PRGEKTKWVMHEYRLDGDFSYRHTCK-EEWVICRIFNK 167
P+G KT W+MHEYRL + K ++WV+CRI+ K
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Query: 11 DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
D + + LPPGFRF+PTDEEL+ YL K F IAE+DL + +PW LP+ A G
Sbjct: 10 DPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG 69
Query: 71 EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
EKEWYFFS RDRKYP G R NR G+GYWKATG D+ + + G +G+KK LVFY G+A
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS--TEGQRVGIKKALVFYIGKA 127
Query: 131 PRGEKTKWVMHEYRLDGDFSYRHTCK-EEWVICRIFNK 167
P+G KT W+MHEYRL + K ++WV+CRI+ K
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 103/163 (63%), Gaps = 8/163 (4%)
Query: 11 DEVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMG 70
D E LPPGFRFHPTD+EL+ YL K IAEVDL + +PW+LP+ A G
Sbjct: 8 DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 71 EKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRA 130
+EWYFF+ RDRKYP G R NRA G GYWKATG D+ V G LG+KK LVFY G+A
Sbjct: 68 AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA--PRGRTLGIKKALVFYAGKA 125
Query: 131 PRGEKTKWVMHEYRLDGDFSYRHTCK------EEWVICRIFNK 167
PRG KT W+MHEYRL K ++WV+CR++NK
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|2ZET|C Chain C, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|D Chain D, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 153
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 58 CEPWELPDVAKMGEKEWYFFSLRDR 82
C+P L V K+G EWY+ +R R
Sbjct: 111 CDPCHLARVVKIGSLEWYYQHVRAR 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,797,930
Number of Sequences: 62578
Number of extensions: 488568
Number of successful extensions: 1485
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1471
Number of HSP's gapped (non-prelim): 10
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)