Query 016283
Match_columns 392
No_of_seqs 221 out of 979
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.7E-56 5.8E-61 407.3 14.4 153 13-167 10-168 (174)
2 1ut7_A No apical meristem prot 100.0 5.1E-56 1.7E-60 402.9 13.1 155 12-168 11-166 (171)
3 1ldd_A APC2WHB, anaphase promo 13.2 81 0.0028 24.7 1.7 27 18-45 36-63 (74)
4 1xc0_A Pardaxin P-4, PA4; BEND 8.4 93 0.0032 20.6 0.4 14 275-288 11-24 (33)
5 4dox_A Coat protein; all helix 8.2 1.7E+02 0.0058 27.4 2.3 24 17-40 154-177 (226)
6 3dz1_A Dihydrodipicolinate syn 8.2 1.5E+02 0.0053 28.0 2.0 18 17-36 108-125 (313)
7 3cpr_A Dihydrodipicolinate syn 8.2 1.4E+02 0.0047 28.3 1.7 19 17-36 117-135 (304)
8 1f6k_A N-acetylneuraminate lya 8.0 1.5E+02 0.0051 27.8 1.8 19 17-36 105-123 (293)
9 2ehh_A DHDPS, dihydrodipicolin 7.9 1.5E+02 0.0052 27.7 1.8 19 17-36 101-119 (294)
10 2ojp_A DHDPS, dihydrodipicolin 7.9 1.5E+02 0.0052 27.7 1.8 19 17-36 102-120 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.7e-56 Score=407.27 Aligned_cols=153 Identities=55% Similarity=1.043 Sum_probs=135.4
Q ss_pred cCCCCCCCCceeCCChHHHHHHHHhhcccCCCCCCCceeeccCCCCCCCCCCccccCCceeEEEEecCCccCCCCCccee
Q 016283 13 VNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNR 92 (392)
Q Consensus 13 ~~~~~LPPGFRF~PTDEELI~~YL~~KI~g~plp~~~I~evDVY~~ePWdLP~~ak~GekeWYFFS~R~rKy~tG~RtnR 92 (392)
..++.|||||||||||||||.+||++|+.+.+++..+|.++|||++|||+||+.+..|+++||||++|++||++|.|++|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 45679999999999999999999999999999998899999999999999999988899999999999999999999999
Q ss_pred ccCCceeEeecCCceEEeCCCCceeeeeEEEEEeecCCCCCCCcCeEEEEEEeCCCCCcC------CCCCCceEEEEEEE
Q 016283 93 ATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYR------HTCKEEWVICRIFN 166 (392)
Q Consensus 93 atggGyWKatGkdK~I~~~~~G~lVG~KKtLvFY~GrapkG~KTgWVMhEYrL~~~~~~~------~~~~~e~VLCRIf~ 166 (392)
+|++||||++|++++|... |.+||+||+|+||.|++|+|.||+|+||||+|....... ....++|||||||+
T Consensus 90 ~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp EETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred ecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 9999999999999999863 789999999999999999999999999999998764311 12468999999999
Q ss_pred c
Q 016283 167 K 167 (392)
Q Consensus 167 K 167 (392)
|
T Consensus 168 K 168 (174)
T 3ulx_A 168 K 168 (174)
T ss_dssp S
T ss_pred c
Confidence 8
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.1e-56 Score=402.88 Aligned_cols=155 Identities=54% Similarity=1.008 Sum_probs=133.3
Q ss_pred ccCCCCCCCCceeCCChHHHHHHHHhhcccCCCCCCCceeeccCCCCCCCCCCccccCCceeEEEEecCCccCCCCCcce
Q 016283 12 EVNEQGLPPGFRFHPTDEELITFYLASKVFNGTFCGVEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTN 91 (392)
Q Consensus 12 ~~~~~~LPPGFRF~PTDEELI~~YL~~KI~g~plp~~~I~evDVY~~ePWdLP~~ak~GekeWYFFS~R~rKy~tG~Rtn 91 (392)
...+..|||||||+|||||||.+||++|+.+.+++..+|.++|||++|||+||+.++.|+++||||++|++||++|.|++
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence 35678999999999999999999999999999999889999999999999999998889999999999999999999999
Q ss_pred eccCCceeEeecCCceEEeCCCCceeeeeEEEEEeecCCCCCCCcCeEEEEEEeCCCCCcC-CCCCCceEEEEEEEcC
Q 016283 92 RATGAGYWKATGKDREVCSGSSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYR-HTCKEEWVICRIFNKA 168 (392)
Q Consensus 92 RatggGyWKatGkdK~I~~~~~G~lVG~KKtLvFY~GrapkG~KTgWVMhEYrL~~~~~~~-~~~~~e~VLCRIf~K~ 168 (392)
|+|++||||++|+++.|... |.+||+||+|+||.|++|+|.||+|+||||+|....... ....++|||||||+|+
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~ 166 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166 (171)
T ss_dssp EEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred ccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcC
Confidence 99999999999999999974 689999999999999999999999999999999764211 2356899999999994
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.22 E-value=81 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.3
Q ss_pred CCCCceeCC-ChHHHHHHHHhhcccCCCC
Q 016283 18 LPPGFRFHP-TDEELITFYLASKVFNGTF 45 (392)
Q Consensus 18 LPPGFRF~P-TDEELI~~YL~~KI~g~pl 45 (392)
.|.|+.|.. |++||-. ||..|+..+.+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 477999998 8888765 59999987643
No 4
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=8.39 E-value=93 Score=20.61 Aligned_cols=14 Identities=50% Similarity=0.482 Sum_probs=10.3
Q ss_pred chhHHHhhhccccc
Q 016283 275 PSMLFKALLSHQDF 288 (392)
Q Consensus 275 ~~~~~~~~~~~~~~ 288 (392)
+|-|||.|||.--.
T Consensus 11 ssplfktllsavgs 24 (33)
T 1xc0_A 11 SSPLFKTLLSAVGS 24 (33)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 56799999986443
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=8.24 E-value=1.7e+02 Score=27.43 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=16.8
Q ss_pred CCCCCceeCCChHHHHHHHHhhcc
Q 016283 17 GLPPGFRFHPTDEELITFYLASKV 40 (392)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL~~KI 40 (392)
.-+-|..+.||++|+|.+=..+++
T Consensus 154 ~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 154 QPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCTTCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Confidence 334489999999999998555444
No 6
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=8.19 E-value=1.5e+02 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=14.1
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016283 17 GLPPGFRFHPTDEELITFYL 36 (392)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL 36 (392)
-+||- |.||+++|+.||-
T Consensus 108 v~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 108 IAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp ECCCT--TCCSHHHHHHHHH
T ss_pred ECCCC--CCCCHHHHHHHHH
Confidence 46774 5699999999975
No 7
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=8.16 E-value=1.4e+02 Score=28.27 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=15.2
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016283 17 GLPPGFRFHPTDEELITFYL 36 (392)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL 36 (392)
-+|| |.|.|++++|+.||-
T Consensus 117 v~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 4566 558899999999984
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=8.01 E-value=1.5e+02 Score=27.77 Aligned_cols=19 Identities=16% Similarity=0.252 Sum_probs=14.9
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016283 17 GLPPGFRFHPTDEELITFYL 36 (392)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL 36 (392)
-+||- .|.|++++|+.||-
T Consensus 105 v~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 105 AVTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp EECCC-SSCCCHHHHHHHHH
T ss_pred ECCCC-CCCCCHHHHHHHHH
Confidence 34664 48899999999975
No 9
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=7.89 E-value=1.5e+02 Score=27.72 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016283 17 GLPPGFRFHPTDEELITFYL 36 (392)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL 36 (392)
-+|| |.|.||+++|+.||-
T Consensus 101 v~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 101 VVVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3466 458899999999984
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=7.86 E-value=1.5e+02 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 016283 17 GLPPGFRFHPTDEELITFYL 36 (392)
Q Consensus 17 ~LPPGFRF~PTDEELI~~YL 36 (392)
-+|| |.|.||+++|+.||-
T Consensus 102 v~~P-~y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 102 TVTP-YYNRPSQEGLYQHFK 120 (292)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3466 448899999999984
Done!