BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016286
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 137/228 (60%), Gaps = 4/228 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFD 227
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 135/225 (60%), Gaps = 5/225 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 A-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L +++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ +
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTL 222
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 132/230 (57%), Gaps = 9/230 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 20 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 79
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 80 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 136
Query: 281 DAIEALRISY---KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 137 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 194
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
I G +VML GG++A++ P + GF A ALS DPT+AS P+D
Sbjct: 195 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFD 243
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 132/230 (57%), Gaps = 9/230 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 135
Query: 281 DAIEALRISY---KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
I G +VML GG++A++ P + GF A ALS DPT+AS P+D
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFD 242
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 134/225 (59%), Gaps = 5/225 (2%)
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 26 QNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIED 85
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F A
Sbjct: 86 HIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEIA 142
Query: 283 IEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ L ++++PF VP +M + +++DLG GPN + TACAT I A +
Sbjct: 143 HKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIV 202
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386
RG+A+ M+ GG++A + + + GF A RALS N+D A RP+
Sbjct: 203 QRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPF 246
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 132/230 (57%), Gaps = 9/230 (3%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + DV L++ + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANL--DVA-ALNRDRFGVIVASGIGGIKEIE 135
Query: 281 DAIEALRISY---KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
D + LR+ K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 338 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
I G +VML GG++A++ P + GF A ALS DPT+AS P+D
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFD 242
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 133/226 (58%), Gaps = 2/226 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWD 238
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 133/226 (58%), Gaps = 2/226 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWD 238
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 2/224 (0%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEENHT 119
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 120 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 179
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD
Sbjct: 180 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWD 223
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 2/226 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWD 238
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 2/226 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARII 192
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWD 238
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 135/225 (60%), Gaps = 5/225 (2%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVVVTG+G V+P+G++ + + N +GV+G+++ + FP KIAAE+K F + +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
+ K +++ D+F Y + + + A+ D G+ V+++ + ++ GV IGSG+GG + F
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 284 EA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
E L +++++PF VP + GS +++ G G N + TACAT+ I +A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
RG+A+ + GG++A + L GF A +ALS N DP A RP+D
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFD 223
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 138/232 (59%), Gaps = 11/232 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 217
+RVV+TG+GLVSPL + + LL G SG + F+ +IA I +
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
F+ D + PK +++D F++Y + A +AL D G + N+ D+ + GVLIGSG+GG++
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE--NDEDQVRTGVLIGSGIGGIE 127
Query: 278 VFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+A LR ++++PF +P N+ S +++ GPN+S+ TACAT I +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWD 387
AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYD 239
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 217
+RVV+TG+GLVSPL + + + LLEG SG+ I FD + +IAA I +
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
++ D + K +++D F++Y + A +ALA + + D+ + + G G
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALA----DAEWFPKSDEDQICTGVLIGSGIGG 121
Query: 278 VFYDAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 334
+ + K +++PF +P N+ S +++ G GPN+S+ TAC+T I
Sbjct: 122 IEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAI 181
Query: 335 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDI 388
+AA I G+A+VML GG+++ + I L GF ACRALS RN+DP +ASRP+D+
Sbjct: 182 GDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDV 236
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 10/230 (4%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 222
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 79
Query: 223 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 80 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 137
Query: 278 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
V + A+ Y K++PF VP NM + +++ GPN+++STAC T + +
Sbjct: 138 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGD 197
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+
Sbjct: 198 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPF 246
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 10/230 (4%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 222
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 26 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 85
Query: 223 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 86 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 143
Query: 278 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
V + A+ Y K++PF VP NM + +++ GPN+++STA T + +
Sbjct: 144 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGD 203
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+
Sbjct: 204 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPF 252
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD--GW 223
RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++ + D G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 224 VAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
P+ S ++MD+F+ + A +ALA+ G + E + + ++ SG+GG
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGG-- 140
Query: 278 VFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFC 333
F EA+RI ++++PF +PF +N+ + +++ + GP TACA S
Sbjct: 141 -FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQA 199
Query: 334 ILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWD 387
I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASRP+D
Sbjct: 200 IGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFD 254
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 18/235 (7%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD--GW 223
RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++ + D G
Sbjct: 25 RVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGG 84
Query: 224 VAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
P+ S ++MD+F+ + A +ALA+ G + E + + ++ SG+GG
Sbjct: 85 FDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGG-- 140
Query: 278 VFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFC 333
F EA+RI ++++PF +PF +N+ + +++ + GP TA A S
Sbjct: 141 -FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQA 199
Query: 334 ILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWD 387
I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASRP+D
Sbjct: 200 IGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFD 254
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 115/225 (51%), Gaps = 7/225 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + V
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 81
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ + + + A +A+AD G+TE+ E+ + G+++GSG + D+ +
Sbjct: 82 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSAD 138
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA I
Sbjct: 139 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 198
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ + M GG + + + F A A+S + ND P+ ASR +D
Sbjct: 199 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYD 242
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 31/247 (12%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI----------------SEIETFDCTSFP 208
+RVVVTG+G+V+PLG + + L++G GI +++ TFD S
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLS-- 58
Query: 209 TKIAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
+K+AA + S G L SK + F+ Y + A +AL D E +++
Sbjct: 59 SKVAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGV 118
Query: 266 GVLIGSGLGGMKVFYDAIEALRI----SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321
+ G D +EA ++ ++++PF +P NM S ++M G+ GPN+
Sbjct: 119 SIGGGI-----GSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNH 173
Query: 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPT 380
+ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS + N+ P
Sbjct: 174 AAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQ 233
Query: 381 KASRPWD 387
+ASRP+D
Sbjct: 234 EASRPFD 240
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 115/225 (51%), Gaps = 7/225 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + V
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 64
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ + + + A +A+AD G+TE+ E+ + G+++GSG + D+ +
Sbjct: 65 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSAD 121
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA I
Sbjct: 122 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 181
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ + M GG + + + F A A+S + ND P+ ASR +D
Sbjct: 182 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYD 225
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 190 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 235
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 178 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 223
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
++RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK------ 277
P+ RMD+ + + ++A A G+ D LD ++ GV +GS +
Sbjct: 62 FGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLEREY 118
Query: 278 -VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+ D+ + ++ + ++ A +A +G GP +ST C + + N
Sbjct: 119 LLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGN 178
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
A I G A+VM G +D + PI + F A RA + RN+DP ASRP+D
Sbjct: 179 AVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFD 229
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 178 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 223
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 190 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 235
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 190 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 235
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 178 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 223
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 178 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 223
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 189
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 190 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 235
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 281
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQI 177
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
G+ +++ GG + + F A ALS + ND P KASR +D
Sbjct: 178 QLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYNDTPEKASRTYD 223
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 108/213 (50%), Gaps = 15/213 (7%)
Query: 182 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 236
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 237 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMN 294
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P V N +A++ + LG + +AC++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
+ + + + F RA+S RN++P +ASRP+D
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFD 231
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 14/230 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + F + + ++K S
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSE---- 60
Query: 225 APK--LSKRMDKFM----LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV 278
PK + +++ +F +Y A ++A+AD G+++ ++ G
Sbjct: 61 -PKDLIDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNFRSGLVVGSGGGSPRNQVA 119
Query: 279 FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
DA R K + P+ V A + SA LA G NYSIS+ACATS CI +A
Sbjct: 120 GSDAXRTPR-GLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHAL 178
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWD 387
I G+ +++ GG + F A ALS + ND P KASR +D
Sbjct: 179 ELIQLGKQDIVFAGGGEELCWEXAC-EFDAXGALSTKYNDTPAKASRTYD 227
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 182 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 236
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 237 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMN 294
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P V N +A++ + LG + +A ++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
+ + + + F RA+S RN++P +ASRP+D
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFD 231
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGW 223
KRVV+TGMG V+ LG D L G + + + +D S T++AA + F+
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG---MKVFY 280
K ++ M + +Y + A + ALAD G D + + GV GS G ++ F
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIRAFG 123
Query: 281 DAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+E+ ++ N + T + L DL G S+ACA+ + I A +
Sbjct: 124 TMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDL--KGRIVPTSSACASGSQAIGYAYEN 181
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
I G+ +ML GG++ P + F A S RN++P RP+D
Sbjct: 182 IAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFD 227
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 10/228 (4%)
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 7 DDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPD 66
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
+ +L + D LTA AL D + + + D GV+ + GG +
Sbjct: 67 HIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD---MGVVTANACGGFDFTHRE 123
Query: 283 IEALRISYKKMNPFCVPFA---TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
L K FA N G +++ G GP+ ++ A L A
Sbjct: 124 FRKLWSEGPKSVSVYESFAWFYAVNTG--QISIRHGMRGPSSAL-VAEQAGGLDALGHAR 180
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
IR +++ GG D+A+ P G +A +S DP +A P+D
Sbjct: 181 RTIRRGTPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFD 227
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 25/243 (10%)
Query: 154 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE-----IETFDCTSFP 208
VT K P+ VVVTG+ + + L + + + LL+ SGI +E FD P
Sbjct: 22 VTGKAFPY-----VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFD---LP 73
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
+I + D + +RM ++ + G E +D ++ V
Sbjct: 74 VRIGGHLLE-EFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPE-----VDTNRLMVS 127
Query: 269 IGSGLGGMK--VF-YDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
IG+GLG + VF YD + A K ++P V N +A + ++ + +
Sbjct: 128 IGTGLGSAEELVFSYDDMRAR--GMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVS 185
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASR 384
ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A R
Sbjct: 186 ACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACR 245
Query: 385 PWD 387
P+D
Sbjct: 246 PFD 248
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 17/203 (8%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 219
+ VV+ GM P F++NL+ GV +++ + P + ++ F
Sbjct: 4 EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFD 63
Query: 220 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIG-SGLGGMK 277
+ V PK + MD + LL +A+ DGGI D L + GV +G SG
Sbjct: 64 ASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSG----- 115
Query: 278 VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
+ EAL + + + + M + L+ + GP+ ++ TAC++S + NA
Sbjct: 116 --SETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNA 173
Query: 338 ANHIIRGEANVMLCGGSDAAVIP 360
I G+ + GG + + P
Sbjct: 174 YQAIHSGQCPAAIVGGINVLLKP 196
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 15/216 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 219
+ VV+ GM P + F+ NL+ GV ++ + P ++ ++ F
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFD 61
Query: 220 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV 278
+ V K + MD + LL +A+ DGGI L + GV +G
Sbjct: 62 ASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINP---ASLRGTSTGVWVGVSSS---- 114
Query: 279 FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
DA EAL + + + + M + L+ + GP+ +I TAC++S + +A
Sbjct: 115 --DASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374
I GE + + GG + + P F+ LSQ
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQ 208
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 5/177 (2%)
Query: 197 SEIETFDCTSFPTKIAAEIKS-FSTDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGIT- 253
+EI T + A+I + F W ++P ++ +D+ L+ + A A G T
Sbjct: 2607 TEIRVPRKTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTP 2666
Query: 254 EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313
++M + S+ G+G+GGM + K N + + ++
Sbjct: 2667 TELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726
Query: 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP--IGLGGFVA 368
+G G ACAT+ + + I G+A++++ GG D + IG G A
Sbjct: 2727 VGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAA 2783
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 222 GWVAPK------LSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW A + + +++D LY+L + +AL GIT+ + + S+ G IGSG+
Sbjct: 1167 GWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGV 1226
Query: 274 GGMKVFYDAIEALRISYK--------KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325
GG ALR YK + + F T M + + + L GP +
Sbjct: 1227 GGTS-------ALRGMYKDRYLDKPVQKDILQESFVNT-MAAWVNMLLLSSTGPIKTPVG 1278
Query: 326 ACATSNFCILNAANHIIRGEANVMLCGGSD-----AAVIPIGLGGFVACRALSQRNNDPT 380
ACAT+ + + I++G+A V L GG D + +G + R +P
Sbjct: 1279 ACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPG 1338
Query: 381 KASRP 385
+ SRP
Sbjct: 1339 EMSRP 1343
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
V+P+ + MD LL + + + GI + G G LG K Y
Sbjct: 84 VSPREAAAMDPQQRLLLETSWELVENAGIDPHSLR-------GTATGVFLGVAKFGYGED 136
Query: 284 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
A + + + + V + S ++ +G GP+ S+ TAC++S + A + +
Sbjct: 137 TA---AAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRK 193
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALS 373
GE+++ + GG+ P F RAL+
Sbjct: 194 GESSMAVVGGAAVMATPGVFVDFSRQRALA 223
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 993 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1052
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1053 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1105
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSD 355
CATS + I+ G+A + + GG D
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYD 1134
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSD 355
CATS + I+ G+A + + GG D
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD 1333
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 222 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 273
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 274 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 326
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSD 355
CATS + I+ G+A + + GG D
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD 1333
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGG 353
+++ S +A LG GP ++ TAC++ + A + R E + L GG
Sbjct: 175 SSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGG 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,806,263
Number of Sequences: 62578
Number of extensions: 348406
Number of successful extensions: 708
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 47
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)