BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016288
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/347 (88%), Positives = 329/347 (94%)
Query: 46 HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKEL 105
HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE
Sbjct: 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 106 AQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGN 165
AQNETDS K+++SSE+ IGEKLSEIGGRLDYPRLTK++AE IETLW DPAIQET A GN
Sbjct: 68 AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGN 127
Query: 166 ELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRL 225
ELQ+PD Y MENL+RLSD NY+PTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRL
Sbjct: 128 ELQVPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 226 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285
FDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 286 FEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYF 345
FEKTSFMLFLNKFDIFEKKVL VPLNVCEWF+DYQPVS+GKQEIE+AYEFVKKKFEELY+
Sbjct: 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY 307
Query: 346 QSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
Q+TAPDRVDRVFKIYRTTALD KLVKKTFKLVDETLRRR+L EAGLL
Sbjct: 308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 209/373 (56%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + DS + + +L + G +
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + CF TS +LFLNK D+FE+K+ K PL +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 286
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 287 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 341
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 342 VIIKNNLKDCGLF 354
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 212/373 (56%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
A S E + E+E++++++ + + KLLLLGAGESGKSTI KQ+K++ Q + E
Sbjct: 8 GAGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEE 67
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+I++I+ N Q+I + L DS + ++ KL + ++
Sbjct: 68 CLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSAR-------QDDARKLMHMADTIEEGT 120
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+ KE+++ I+ LW D IQ + +E QL D A Y++ +L+RL YVPT+ DVL +R
Sbjct: 121 MPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSR 180
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG++E QFS + +R+FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 181 VKTTGIIETQFSFKDLN------FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ LF+ + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 235 VLAEDEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 288
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A ++K +F EL + V ++ + T A D + VK F V +
Sbjct: 289 YPEYAGSNTYEEAGNYIKVQFLELNMRRD----VKEIYS-HMTCATDTQNVKFVFDAVTD 343
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 344 IIIKENLKDCGLF 356
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 211/375 (56%), Gaps = 28/375 (7%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 12 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 71
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 72 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 124
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 125 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 184
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 185 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 238
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 239 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 292
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLV 377
P G E A +++ +FE+L ++ +IY T A D K V+ F V
Sbjct: 293 YPEYAGSNTYEEAAAYIQCQFEDL-------NKRKDTKEIYTHFTCATDAKNVQFVFDAV 345
Query: 378 DETLRRRHLFEAGLL 392
+ + + +L + GL
Sbjct: 346 TDVIIKNNLKDCGLF 360
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 208/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
A S E + E+E++++++ + + KLLLLGAGESGKSTI KQ K++ Q G+ E
Sbjct: 2 GAGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQXKIIHQDGYSLEE 61
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+I++I+ N Q+I + L DS + ++ KL ++
Sbjct: 62 CLEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSAR-------QDDARKLXHXADTIEEGT 114
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
KE ++ I+ LW D IQ + +E QL D A Y++ +L+RL YVPT+ DVL +R
Sbjct: 115 XPKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSR 174
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG++E QFS + +R FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 175 VKTTGIIETQFSFKDLN------FRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 228
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NR E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 229 VLAEDEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 282
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A ++K +F EL + V ++ + T A D + VK F V +
Sbjct: 283 YPEYAGSNTYEEAGNYIKVQFLELNXRRD----VKEIYS-HXTCATDTQNVKFVFDAVTD 337
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 338 IIIKENLKDCGLF 350
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 209/373 (56%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 341 VIIKNNLKDCGLF 353
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 29/356 (8%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I
Sbjct: 1 EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + ++ + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q ++ E QL D A+Y++ +L R+S +NY+PT+ DVL RV+TTG+VE F+ +
Sbjct: 113 QACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 337
D + F +TS +LFLNK D+FE+K+ + PL +C P TG E A +++
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQ 280
Query: 338 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 391
+FE+L +R +IY T A D K V+ F V + + + +L E GL
Sbjct: 281 CQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 211/375 (56%), Gaps = 28/375 (7%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 8 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 67
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 68 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 120
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 121 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 180
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 181 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 235 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 288
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLV 377
P G E A +++ +FE+L ++ +IY T A D K V+ F V
Sbjct: 289 YPEYAGSNTYEEAAAYIQCQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAV 341
Query: 378 DETLRRRHLFEAGLL 392
+ + + +L + GL
Sbjct: 342 TDVIIKNNLPDCGLF 356
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 8 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 67
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 68 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 120
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 121 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 174
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 175 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 234
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 235 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 283
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 284 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 327
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 199/344 (57%), Gaps = 24/344 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ Q G+ E +I++I+ N Q+I + L
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + ++ KL + ++ + KE+++ I+ LW D IQ + +E Q
Sbjct: 66 YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L+RL YVPT+ DVL +RV+TTG++E QFS + +R+FDV
Sbjct: 119 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A ++K +F EL +
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAGNYIKVQFLELNMRRD 286
Query: 349 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
V ++ + T A D + VK F V + + + +L + GL
Sbjct: 287 ----VKEIYS-HMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 325
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 65 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 117
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 118 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 171
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 172 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 231
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 232 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 280
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 281 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 324
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 204/357 (57%), Gaps = 29/357 (8%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I
Sbjct: 1 EDGEKAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + DS + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q + E QL D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H
Sbjct: 113 QACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 337
D + F TS +LFLNK D+FE+K+ K PL +C P G E A +++
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQ 280
Query: 338 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
+FE+L ++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 281 CQFEDL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 330
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 203/353 (57%), Gaps = 29/353 (8%)
Query: 42 KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101
KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I +
Sbjct: 4 KAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 62
Query: 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETY 161
L + DS + + +L + G + +T ELA I+ LW D +Q +
Sbjct: 63 MGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACF 115
Query: 162 AHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGE 221
E QL D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H
Sbjct: 116 NRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH----- 170
Query: 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD +
Sbjct: 171 -FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 229
Query: 282 KQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFE 341
F TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE
Sbjct: 230 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFE 283
Query: 342 ELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
+L ++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 284 DL-------NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 329
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 64 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 230
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 279
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 280 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 323
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 199/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 6 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 66 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 281
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 282 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 325
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + DS + + +L + G +
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 286
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 287 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 341
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 342 VIIKNNLKDCGLF 354
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 203/345 (58%), Gaps = 28/345 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
++ + + +L + G + +T ELA I+ LW D +Q ++ E Q
Sbjct: 64 FGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A+Y++ +L R+S +NY+PT+ DVL RV+TTG+VE F+ + +++FDV
Sbjct: 117 LNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F +
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTE 230
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ + PL +C P TG E A +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQCQFEDL----- 279
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 391
+R +IY T A D K V+ F V + + + +L E GL
Sbjct: 280 --NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 322
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K+ + G+ E E
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEE 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 66 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 286
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V F V +
Sbjct: 287 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVCFVFDAVTD 341
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 342 VIIKNNLKDCGLF 354
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VPTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 341 VIIKNNLKDCGLF 353
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 208/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVG QR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 341 VIIKNNLKDCGLF 353
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 217/373 (58%), Gaps = 30/373 (8%)
Query: 20 NAADSEENAQTAEIERRIEQET-KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA 78
+A D ++ I+R + ++ KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSED 63
Query: 79 ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP 138
E K Y V+++N Q+I + L + ++ + + +L + G +
Sbjct: 64 ECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEG 116
Query: 139 RLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYA 198
+T ELA I+ LW D +Q ++ E QL D A+Y++ +L R+S +NY+PT+ DVL
Sbjct: 117 VMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRT 176
Query: 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYD 258
RV+TTG+VE F+ + +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 177 RVKTTGIVETHFTFKDLY------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 259 QTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKD 318
L EDE+ NRM E+ +LFD + F +TS +LFLNK D+FE+K+ + PL +C
Sbjct: 231 LVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC----- 285
Query: 319 YQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKL 376
P TG E A +++ +FE+L +R +IY T A D K V+ F
Sbjct: 286 -YPEYTGSNTYEEAAAYIQCQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDA 337
Query: 377 VDETLRRRHLFEA 389
V + + + +L E+
Sbjct: 338 VTDVIIKNNLKES 350
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 208/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGG R+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 341 VIIKNNLKDCGLF 353
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 207/356 (58%), Gaps = 29/356 (8%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y V+++N Q+I
Sbjct: 1 EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
+ L + ++ + + +L + G + +T ELA I+ LW D +
Sbjct: 60 IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
Q ++ E L D A+Y++ +L R+S +NY+PT+ DVL RV+TTG+VE F+ +
Sbjct: 113 QACFSRSREYLLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
+++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVK 337
D + F +TS +LFLNK D+FE+K+ + PL +C P TG E A +++
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC------YPEYTGSNTYEEAAAYIQ 280
Query: 338 KKFEELYFQSTAPDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGL 391
+FE+L +R +IY T A D K V+ F V + + + +L E GL
Sbjct: 281 CQFEDL-------NRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 208/373 (55%), Gaps = 24/373 (6%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + KLLLLGA ESGKSTI KQ+K++ + G+ E E
Sbjct: 5 SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
K Y +V+++N Q+I + L + D+ + + +L + G +
Sbjct: 65 CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+T ELA I+ LW D +Q + E QL D A Y++ +L R++ NY+PT+ DVL R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V+TTG+VE F+ H +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L EDE+ NRM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------ 285
Query: 320 QPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDE 379
P G E A +++ +FE+L + + + T A D K V+ F V +
Sbjct: 286 YPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTD 340
Query: 380 TLRRRHLFEAGLL 392
+ + +L + GL
Sbjct: 341 VIIKNNLKDCGLF 353
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 198/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 9 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E
Sbjct: 69 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYL 121
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 235
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 236 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 284
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 285 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 328
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 198/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 6 KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 66 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 232
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 233 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 281
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 282 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 325
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 198/346 (57%), Gaps = 28/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 9 KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 69 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 121
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 235
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 236 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL----- 284
Query: 349 APDRVDRVFKIYR--TTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
++ +IY T A D K V+ F V + + + +L + GL
Sbjct: 285 --NKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 328
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 178/295 (60%), Gaps = 19/295 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 3 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 62
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 63 FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 115
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 116 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 169
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 170 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 229
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 343
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 230 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL 278
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/295 (41%), Positives = 178/295 (60%), Gaps = 19/295 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N Q+I + L +
Sbjct: 4 KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
D+ + + +L + G + +T ELA I+ LW D +Q + E Q
Sbjct: 64 FGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L R++ NY+PT+ DVL RV+TTG+VE F+ H +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+A+IFC A+S+YD L EDE+ NRM E+ +LFD + F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 230
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEEL 343
TS +LFLNK D+FE+K+ K PL +C P G E A +++ +FE+L
Sbjct: 231 TSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNTYEEAAAYIQCQFEDL 279
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 198/344 (57%), Gaps = 24/344 (6%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ Q G+ E +I++I+ N Q+I + L
Sbjct: 5 KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
DS + ++ KL + ++ + KE+++ I+ LW D IQ + +E Q
Sbjct: 65 YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 117
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D A Y++ +L+RL YVPT+ DVL +RV+TTG++E QFS + +R+FDV
Sbjct: 118 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 171
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ER+KWIH FEGV+ +IF AA+S YD L ED++ NRM E+ LF+ + F
Sbjct: 172 GGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFAT 231
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
TS +LFLNK D+F +K+ K L++C F DY G E+A ++K +F EL +
Sbjct: 232 TSIVLFLNKKDVFSEKIKKAHLSIC--FPDYN----GPNTYEDAGNYIKVQFLELNMRRD 285
Query: 349 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
V ++ + T A D + VK F V + + + +L + GL
Sbjct: 286 ----VKEIYS-HMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 324
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 193/346 (55%), Gaps = 30/346 (8%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLGAGESGKSTI KQ+K++ + GF ++K Y V+++N Q++ + L
Sbjct: 14 KLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVE 73
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRL-DYPRLTKELAEDIETLWADPAIQETYAHGNEL 167
D E K + + ++ R+ D + EL + LW D IQE + E
Sbjct: 74 YGDK-------ERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREY 126
Query: 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 227
QL D A Y++++L R+ +Y PT+ D+L RV+TTG+VE F+ H +RLFD
Sbjct: 127 QLNDSAKYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLH------FRLFD 180
Query: 228 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
VGGQR+ER+KWIH FE V+A+IFC A+S YDQ L EDE NRM E+ LFD + F
Sbjct: 181 VGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFI 240
Query: 288 KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQS 347
TS +LFLNK D+F +K+ K PL +C F +Y G E+A +++ +FE ++
Sbjct: 241 DTSIILFLNKKDLFGEKIKKSPLTIC--FPEYP----GSNTYEDAAAYIQTQFES---KN 291
Query: 348 TAPDRVDRVFKIY--RTTALDPKLVKKTFKLVDETLRRRHLFEAGL 391
+P++ +IY T A D ++ F V + + +L GL
Sbjct: 292 RSPNK-----EIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGCGL 332
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 201/362 (55%), Gaps = 27/362 (7%)
Query: 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
EIER++ ++ + + KLLLLG GESGKST KQ++++ +G+ + + + + +++ N+
Sbjct: 18 EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 77
Query: 92 YQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETL 151
+ ++ + D++K E+ + +L + I++L
Sbjct: 78 FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSL 129
Query: 152 WADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFS 211
W DP IQE Y E QL D Y++ +L R++D +Y+PT+ DVL RV TTG++E F
Sbjct: 130 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFD 189
Query: 212 PVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMM 271
++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E + +NRM
Sbjct: 190 ------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRME 243
Query: 272 ETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIE 330
E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY P G Q + +
Sbjct: 244 ESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGPQRDAQ 297
Query: 331 NAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAG 390
A EF+ K F +L PD D++ + T A D + ++ F V +T+ + +L E
Sbjct: 298 AAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYN 351
Query: 391 LL 392
L+
Sbjct: 352 LV 353
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 194/364 (53%), Gaps = 36/364 (9%)
Query: 38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
E KA + + KLLLLGAGESGKST KQ++++ FD+ + + I++NV + ++V
Sbjct: 4 EDGEKAAREV-KLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRV 62
Query: 98 LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------I 148
L D ++L D+ +N+ G+KL R P + + E I
Sbjct: 63 LVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAI 113
Query: 149 ETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEI 208
LW D IQ Y E QL + YF++NL +L +Y+P++ D+L AR T G+ E
Sbjct: 114 RALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHET 173
Query: 209 QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 268
F+ H +++FDVGGQR+ER+KW FEGV+A+IFC A+S+YDQ L ED Q N
Sbjct: 174 HFTFKDLH------FKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTN 227
Query: 269 RMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQE 328
RM E+ +LFD + F TS +LFLNK D+FE+K+ K PL +C P G
Sbjct: 228 RMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC------YPEYAGSNT 281
Query: 329 IENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFE 388
E A +++ +FE+L + + + T A D K V+ F V + + + +L +
Sbjct: 282 YEEAAAYIQCQFEDLNKRKDTKE-----IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 336
Query: 389 AGLL 392
GL
Sbjct: 337 CGLF 340
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 204/374 (54%), Gaps = 27/374 (7%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + KLLLLG GESGKST KQ++++ +G+ + +
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+ + +++ N++ ++ + D++K E+ + +L
Sbjct: 66 KRGFTKLVYQNIFTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSA 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+ I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DVL R
Sbjct: 118 FENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V TTG++E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ
Sbjct: 178 VPTTGIIEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L E + +NRM E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY
Sbjct: 232 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDY 285
Query: 320 QPVSTGKQ-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378
P G Q + + A EF+ K F +L PD D++ + T A D + ++ F V
Sbjct: 286 FPEYDGPQRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVK 339
Query: 379 ETLRRRHLFEAGLL 392
+T+ + +L E L+
Sbjct: 340 DTILQLNLKEYNLV 353
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 203/367 (55%), Gaps = 37/367 (10%)
Query: 32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
EIER++ ++ + + KLLLLG GESGKST KQ++++ +G+ + + + + +++ N+
Sbjct: 12 EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 71
Query: 92 YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIG----GRLDYPRLTKELAE 146
+ ++ + D++K E NK + + E+ D P
Sbjct: 72 FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA---- 119
Query: 147 DIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVV 206
I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DVL V TTG++
Sbjct: 120 -IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGII 178
Query: 207 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ 266
E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ L E +
Sbjct: 179 EYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 267 KNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGK 326
+NRM E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY P G
Sbjct: 233 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGP 286
Query: 327 Q-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRH 385
Q + + A EF+ K F +L PD D++ + T A D + ++ F V +T+ + +
Sbjct: 287 QRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 340
Query: 386 LFEAGLL 392
L E L+
Sbjct: 341 LKEYNLV 347
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/374 (32%), Positives = 204/374 (54%), Gaps = 27/374 (7%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + KLLLLG GESGKST KQ++++ +G+ + +
Sbjct: 8 SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 67
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+ + +++ N++ ++ + D++K E+ + +L
Sbjct: 68 KRGFTKLVYQNIFTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSA 119
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
+ I++LW DP IQE Y E QL D Y++ +L R++D +Y+PT+ DVL R
Sbjct: 120 FENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR 179
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
V TTG++E F ++R+ DVGGQR+ERRKWIH FE V++++F A+SEYDQ
Sbjct: 180 VPTTGIIEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 233
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDY 319
L E + +NRM E+K LF ++ P F+ +S +LFLNK D+ E+K++ L DY
Sbjct: 234 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL------VDY 287
Query: 320 QPVSTGKQ-EIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVD 378
P G Q + + A EF+ K F +L PD D++ + T A D + ++ F V
Sbjct: 288 FPEYDGPQRDAQAAREFILKMFVDL-----NPDS-DKIIYSHFTCATDTENIRFVFAAVK 341
Query: 379 ETLRRRHLFEAGLL 392
+T+ + +L E L+
Sbjct: 342 DTILQLNLKEYNLV 355
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 191/345 (55%), Gaps = 27/345 (7%)
Query: 49 KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
KLLLLG GESGKST KQ++++ +G+ + + + + +++ N++ ++ +
Sbjct: 9 KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRA------- 61
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
D++K E+ + +L + I++LW DP IQE Y E Q
Sbjct: 62 -MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQ 120
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
L D Y++ +L R++D +Y+PT+ DVL RV TTG++E F ++R+ DV
Sbjct: 121 LSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFD------LQSVIFRMVDV 174
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 288
GGQR+ERRKWIH FE V++++F A+SEYDQ L E + +NRM E+K LF ++ P F+
Sbjct: 175 GGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234
Query: 289 TSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFVKKKFEELYFQS 347
+S +LFLNK D+ E+K++ L DY P G Q + + A EF+ K F +L
Sbjct: 235 SSVILFLNKKDLLEEKIMYSHL------VDYFPEYDGPQRDAQAAREFILKMFVDL---- 284
Query: 348 TAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
PD D++ + T A D + ++ F V +T+ + +L E L+
Sbjct: 285 -NPDS-DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 203/375 (54%), Gaps = 35/375 (9%)
Query: 20 NAADSEENAQTAEIERRIEQ--ETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77
+A D ++ I+R + + E +A + + K+LLLGAGESGKST KQ++++ FD+
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRIIHGREFDQ 65
Query: 78 AELKSYISVIHANVYQTIKVLYDGSKEL------AQNETDSMKFVVSSENKEIGEKLSEI 131
L + I N+ + +VL D +L ++NE M F+++ ENK G +
Sbjct: 66 KALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGM-FLMAFENKA-GLPVEPA 123
Query: 132 GGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPT 191
+L P L+ LW D I+E ++ +E QL + YF++NL R+ NY P+
Sbjct: 124 TFQLYVPALS--------ALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPS 175
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 251
K D+L AR T G+VE F KK +++ DVGGQR++R+KW F+G+++++F
Sbjct: 176 KQDILLARKATKGIVEHDFVI----KKIP--FKMVDVGGQRSQRQKWFQCFDGITSILFM 229
Query: 252 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLN 311
+ SEYDQ L ED + NR++E+ +F+ ++ F S +LFLNK D+ +KV V +
Sbjct: 230 VSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKSV--S 287
Query: 312 VCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVK 371
+ + F D++ +E+ ++ + F+ + P +F + TTA+D + ++
Sbjct: 288 IKKHFPDFK---GDPHRLEDVQRYLVQCFDRKRRNRSKP-----LFHHF-TTAIDTENIR 338
Query: 372 KTFKLVDETLRRRHL 386
F V +T+ + +L
Sbjct: 339 FVFHAVKDTILQENL 353
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 159/291 (54%), Gaps = 24/291 (8%)
Query: 50 LLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNE 109
+ LLG+GESGKSTI KQ+K+LF GF E E ++ S I +NV + L + S L
Sbjct: 8 VXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNH-- 65
Query: 110 TDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQL 169
K+ S+ E +E L + + EL D+E LWAD IQ TY + QL
Sbjct: 66 --PXKYQPKSK-----EFTTEDPVTLPF---SPELVGDVEALWADEGIQATYEESAKFQL 115
Query: 170 PDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVG 229
PDCA Y EN++R++ +YVPT++D+++ R +TTG+ E F + L DVG
Sbjct: 116 PDCAKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFV------VKDIPFHLIDVG 169
Query: 230 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 289
GQR+ER+ W+ F V IF +++EYD L+ED +R+ E+ +F + +
Sbjct: 170 GQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGA 229
Query: 290 SFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEFVKKKF 340
++FLNK D+FE+K+ KVPLN F +Y TG +++++ F
Sbjct: 230 VKLIFLNKXDLFEEKLTKVPLNTI--FPEY----TGGDNAVXGAQYIQQLF 274
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 197/399 (49%), Gaps = 34/399 (8%)
Query: 9 MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
MG C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI K
Sbjct: 1 MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66 QIKLLFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124
Q+++L GF+ ++E + + I N+ + I+ + L V N E
Sbjct: 59 QMRILHVNGFNGDSEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPEN 110
Query: 125 GEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQR 182
++ I ++ P E E + LW D ++ Y NE QL DCA YF++ +
Sbjct: 111 QFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 170
Query: 183 LSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLF 242
+ +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI F
Sbjct: 171 IKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCF 224
Query: 243 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302
V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 225 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Query: 303 KKVLKVPLNVCEWFKDYQPVSTGKQ---------EIENAYEFVKKKFEELYFQSTAPDRV 353
+KVL + ++F ++ +T + + A F++ +F + STA
Sbjct: 285 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDG 341
Query: 354 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
+ T A+D + +++ F + ++R HL + LL
Sbjct: 342 RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 34/399 (8%)
Query: 9 MGLLCSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFK 65
MG C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI K
Sbjct: 1 MG--CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVK 58
Query: 66 QIKLLFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI 124
Q+++L GF+ + E + + I N+ + I+ + L V N E
Sbjct: 59 QMRILHVNGFNGDGEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPEN 110
Query: 125 GEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQR 182
++ I ++ P E E + LW D ++ Y NE QL DCA YF++ +
Sbjct: 111 QFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 170
Query: 183 LSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLF 242
+ +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI F
Sbjct: 171 IKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCF 224
Query: 243 EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 302
V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 225 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 284
Query: 303 KKVLKVPLNVCEWFKDYQPVSTGKQ---------EIENAYEFVKKKFEELYFQSTAPDRV 353
+KVL + ++F ++ +T + + A F++ +F + STA
Sbjct: 285 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASGDG 341
Query: 354 DRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
+ T A+D + +++ F + ++R HL + LL
Sbjct: 342 RHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 194/371 (52%), Gaps = 34/371 (9%)
Query: 20 NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
+A D ++ I+R + ++ + + K+LLLGAGESGKST KQ++++ FD+
Sbjct: 6 SAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRA 65
Query: 80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
+ + I++NV + ++VL D ++L D+ +N+ G+KL R P
Sbjct: 66 REEFRPTIYSNVIKGMRVLVDAREKLHIPWGDN-------KNQLHGDKLMAFDTR--APM 116
Query: 140 LTKELAED---------IETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVP 190
+ + E I LW D IQ Y E QL + YF++NL +L +Y+P
Sbjct: 117 AAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIP 176
Query: 191 TKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
++ D+L AR T G+ E F + +++ DVGGQR+ER++W F+ V++++F
Sbjct: 177 SQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF 230
Query: 251 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPL 310
+ SE+DQ L ED Q NR+ E+ +F+ ++ F S +LFLNK D+ E+KV V
Sbjct: 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV-- 288
Query: 311 NVCEWFKDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLV 370
++ ++F +++ ++++ KF F+ D+ R + TTA++ + +
Sbjct: 289 SIKDYFLEFEGDPHCLRDVQ--------KFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340
Query: 371 KKTFKLVDETL 381
+ F+ V +T+
Sbjct: 341 RLVFRDVKDTI 351
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 171 bits (433), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 194/404 (48%), Gaps = 36/404 (8%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD-------EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS--- 119
L GF+ + KS A Q IK + KE + +M +V
Sbjct: 63 LHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDIK---NNLKEAIETIVAAMSNLVPPVEL 119
Query: 120 ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFM 177
N E ++ I ++ P E E + LW D ++ Y NE QL DCA YF+
Sbjct: 120 ANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFL 179
Query: 178 ENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRK 237
+ + + +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRK
Sbjct: 180 DKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRK 233
Query: 238 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNK 297
WI F V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK
Sbjct: 234 WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNK 293
Query: 298 FDIFEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQST 348
D+ +KVL + ++F +D P + A F++ +F + ST
Sbjct: 294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---ST 350
Query: 349 APDRVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
A + T A+D + +++ F + ++R HL + LL
Sbjct: 351 ASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 195/401 (48%), Gaps = 30/401 (7%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
L GF+ E + ++ S ++ + + KE + +M +V N
Sbjct: 63 LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
E ++ I ++ P E E + LW D ++ Y NE QL DCA YF++ +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
+ +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300
F V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
Query: 301 FEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 351
+KVL + ++F +D P + A F++ +F + STA
Sbjct: 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASG 353
Query: 352 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
+ T A+D + +++ F + ++R HL + LL
Sbjct: 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 195/401 (48%), Gaps = 30/401 (7%)
Query: 13 CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
C N + +EE AQ +IE++++++ + + +LLLLGAGESGKSTI KQ+++
Sbjct: 3 CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70 LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
L GF+ E + ++ S ++ + + KE + +M +V N
Sbjct: 63 LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
E ++ I ++ P E E + LW D ++ Y NE QL DCA YF++ +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
+ +YVP+ D+L RV T+G+ E +F + + +FDVGGQR+ERRKWI
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 300
F V+A+IF A S Y+ + ED Q NR+ E LF + S +LFLNK D+
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
Query: 301 FEKKVLKVPLNVCEWF---------KDYQPVSTGKQEIENAYEFVKKKFEELYFQSTAPD 351
+KVL + ++F +D P + A F++ +F + STA
Sbjct: 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRI---STASG 353
Query: 352 RVDRVFKIYRTTALDPKLVKKTFKLVDETLRRRHLFEAGLL 392
+ T A+D + +++ F + ++R HL + LL
Sbjct: 354 DGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 183/346 (52%), Gaps = 34/346 (9%)
Query: 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
K + K+LLLGAGESGKST KQ++++ FD+ + + I++NV + ++VL D ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------IETLWADP 155
L D+ +N+ G+KL R P + + E I LW D
Sbjct: 67 LHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAIRALWEDS 117
Query: 156 AIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGE 215
IQ Y E QL + YF++NL +L +Y+P++ D+L AR T G+ E F
Sbjct: 118 GIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF----- 172
Query: 216 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 275
+ +++ DVGGQR+ER++W F+ V++++F + SE+DQ L ED Q NR+ E+
Sbjct: 173 -EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 276 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 335
+F+ ++ F S +LFLNK D+ E+KV V ++ ++F +++ ++++
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLEFEGDPHCLRDVQ----- 284
Query: 336 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381
KF F+ D+ R + TTA++ + ++ F+ V +T+
Sbjct: 285 ---KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 327
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 182/346 (52%), Gaps = 34/346 (9%)
Query: 45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
K + K+LLLGAGESGKST KQ++++ FD+ + + I++NV + ++VL D ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------IETLWADP 155
L D+ +N+ G+KL R P + + E I LW D
Sbjct: 67 LHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAIRALWEDS 117
Query: 156 AIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGE 215
IQ Y E QL + YF++NL +L +Y+P++ D+L AR T G+ E F
Sbjct: 118 GIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF----- 172
Query: 216 HKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE 275
+ +++ DVGG R+ER++W F+ V++++F + SE+DQ L ED Q NR+ E+
Sbjct: 173 -EIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 231
Query: 276 LFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQEIENAYEF 335
+F+ ++ F S +LFLNK D+ E+KV V ++ ++F +++ ++++
Sbjct: 232 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLEFEGDPHCLRDVQ----- 284
Query: 336 VKKKFEELYFQSTAPDRVDRVFKIYRTTALDPKLVKKTFKLVDETL 381
KF F+ D+ R + TTA++ + ++ F+ V +T+
Sbjct: 285 ---KFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 327
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ D+ + ++ +RM+ EL D VL
Sbjct: 66 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL- 124
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 125 ---------LVFANKQDL 133
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 426
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 427 ---------LIFANKQDL 435
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278
+G + FD+GG RR W + ++ ++F ++++ R++E+KE D
Sbjct: 64 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKEELD 113
Query: 279 WVLKQPCFEKTSFMLFLNKFD 299
++ ++ NK D
Sbjct: 114 SLMTDETIANVPILILGNKID 134
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 46 FTVWDVGGQDRIRSLWRHYYRNTEGVIF----------VVDSNDRSRIGEAREVMQRMLN 95
Query: 283 QPCFEKTSFMLFLNKFDIFE 302
+ ++++F NK D+ E
Sbjct: 96 EDELRNAAWLVFANKQDLPE 115
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIF 250
KDD L V T P E +G + FD+GG RR W + ++ ++F
Sbjct: 37 KDDRLGQHVPT-------LHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVF 89
Query: 251 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299
++++ R++E+KE D ++ ++ NK D
Sbjct: 90 LVDCADHE----------RLLESKEELDSLMTDETIANVPILILGNKID 128
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278
+G + FD+GG RR W + ++ ++F ++++ R++E+KE D
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKEELD 116
Query: 279 WVLKQPCFEKTSFMLFLNKFD 299
++ ++ NK D
Sbjct: 117 SLMTDETIANVPILILGNKID 137
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + VIF + ++R+ E +E+ +L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIFVV----------DSNDRSRIGEAREVMQRMLN 112
Query: 283 QPCFEKTSFMLFLNKFDIFE 302
+ ++++F NK D+ E
Sbjct: 113 EDELRNAAWLVFANKQDLPE 132
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 104
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 105 ---------LIFANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 116
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 117 ---------LIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 59 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 117
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 118 ---------LIFANKQDL 126
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 104
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 105 ---------LIFANKQDL 113
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKEL 276
K S + +FD+ GQ R W H ++ A+IF + + + RM+ KE
Sbjct: 63 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF----------VIDSSDRLRMVVAKEE 112
Query: 277 FDWVLKQPCFE--KTSFMLFLNKFDI 300
D +L P + + + F NK D+
Sbjct: 113 LDTLLNHPDIKHRRIPILFFANKMDL 138
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYRNTEGVIF----------VIDSNDRSRIGEAREVMQRMLN 112
Query: 283 QPCFEKTSFMLFLNKFDIFE 302
+ +++F NK D+ E
Sbjct: 113 EDELRNAVWLVFANKQDLPE 132
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + G +IF ++ D+ ++ +R++ +E D ++
Sbjct: 46 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII- 104
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 105 ---------LIFANKQDL 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 269
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 270 ---------LVFANKQDL 278
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 104
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 105 ---------LVFANKQDL 113
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H ++ A+IF + + ++R+ E +E +L
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIF----------VVDSNDRDRIGEAREELMKMLN 112
Query: 283 QPCFEKTSFMLFLNKFDI 300
+ ++F NK D+
Sbjct: 113 EDEMRNAILLVFANKHDL 130
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + VIF + + ++R+ E +E+ +L
Sbjct: 63 FTVWDVGGQDRIRSLWRHYYCNTEGVIF----------VVDSNDRSRIGEAREVMQRMLN 112
Query: 283 QPCFEKTSFMLFLNKFDIFE 302
+ ++++F NK D+ E
Sbjct: 113 EDELCNAAWLVFANKQDLPE 132
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 62 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 120
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 121 ---------LVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 121
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 122 ---------LVFANKQDL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +M++ EL D VL
Sbjct: 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL- 133
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 134 ---------LVFANKQDM 142
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278
+G + FD+GG RR W + ++ ++F +++ +R++E+K +
Sbjct: 77 AGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADH----------SRLVESKVELN 126
Query: 279 WVLKQPCFEKTSFMLFLNKFD 299
++ ++ NK D
Sbjct: 127 ALMTDETISNVPILILGNKID 147
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 59 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 117
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 118 ---------LIFANKQDL 126
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 49 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 107
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 108 ---------LIFANKQDL 116
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGG R W H + G +IF ++ D+ ++ +R++ +E+ D ++
Sbjct: 48 FNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII- 106
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 107 ---------LIFANKQDL 115
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +M+ EL D VL
Sbjct: 63 FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVL- 121
Query: 283 QPCFEKTSFMLFLNKFDI 300
+LF NK D+
Sbjct: 122 ---------LLFANKQDL 130
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
+ +FD+GG + R W ++ + AVIF S++ + + M++ +++
Sbjct: 64 AFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRR--- 120
Query: 282 KQPCFEKTSFMLFLNKFD 299
+ P + F+ F NK D
Sbjct: 121 ELPGGGRVPFLFFANKMD 138
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGGQ R W H + +IF ++ ++ E+ +RM+ +EL D ++
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAII- 121
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 122 ---------LVFANKQDL 130
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++DVGG R W H F+ +IF ++ ++ E+ RM+ EL D VL
Sbjct: 48 FTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL- 106
Query: 283 QPCFEKTSFMLFLNKFDI 300
++F NK D+
Sbjct: 107 ---------LVFANKQDL 115
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 274
EH+ G ++DVGGQ++ R W + FE +I+ + + + RM + +
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 105
Query: 275 ELFDWVLKQPCFEKTSFMLFLNKFDI 300
+L + + ++F NK D+
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 274
EH+ G ++DVGGQ++ R W + FE +I+ + + + RM + +
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 105
Query: 275 ELFDWVLKQPCFEKTSFMLFLNKFDI 300
+L + + ++F NK D+
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
K +L+D+GGQ R W GVSA+++ + DQ E + E L
Sbjct: 64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIEASKN----ELHNLL 117
Query: 278 DWVLKQPCFEKTSFMLFLNKFDI 300
D +P + ++ NK D+
Sbjct: 118 D----KPQLQGIPVLVLGNKRDL 136
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 274
EH+ G ++DVGGQ++ R W + FE +I+ + + + RM + +
Sbjct: 56 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 103
Query: 275 ELFDWVLKQPCFEKTSFMLFLNKFDI 300
+L + + ++F NK D+
Sbjct: 104 RELQSLLVEERLAGATLLIFANKQDL 129
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
K +L+D+GGQ R W GVSA+++ + DQ E KN +
Sbjct: 73 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY--MVDAADQEKIE-ASKNELHN----- 124
Query: 278 DWVLKQPCFEKTSFMLFLNKFDI 300
+L +P + ++ NK D+
Sbjct: 125 --LLDKPQLQGIPVLVLGNKRDL 145
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
++D+GGQ + R W + +AVIF ++ D+ ++ + M++ +EL D
Sbjct: 66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD------ 119
Query: 285 CFEKTSFMLFLNKFD 299
+ ++F NK D
Sbjct: 120 ----AALLVFANKQD 130
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
++++D+GGQ + R W + AVI+ + D+ + M+E +EL
Sbjct: 48 FQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEEL------ 101
Query: 283 QPCFEKTSFMLFLNKFDI 300
K ++F NK D+
Sbjct: 102 ----RKAILVVFANKQDM 115
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 282
+ ++D+GGQ R W F AVI+ + + ++RM K +L
Sbjct: 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIY----------VVDSTDRDRMGVAKHELYALLD 117
Query: 283 QPCFEKTSFMLFLNKFDI 300
+ K+ ++F NK D+
Sbjct: 118 EDELRKSLLLIFANKQDL 135
>pdb|1TI2|A Chain A, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|C Chain C, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|E Chain E, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|G Chain G, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|I Chain I, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|K Chain K, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI4|A Chain A, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|C Chain C, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|E Chain E, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|G Chain G, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|I Chain I, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|K Chain K, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI6|A Chain A, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|C Chain C, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|E Chain E, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|G Chain G, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|I Chain I, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|K Chain K, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLD|M Chain M, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|O Chain O, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|Q Chain Q, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|S Chain S, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|U Chain U, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|W Chain W, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLE|M Chain M, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|O Chain O, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|Q Chain Q, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|S Chain S, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|U Chain U, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|W Chain W, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLF|M Chain M, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|O Chain O, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|Q Chain Q, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|S Chain S, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|U Chain U, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|W Chain W, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
Length = 875
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 166 ELQLPDCANYFMENLQRLSD-ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYR 224
++ LP C N+ ++ ++ + Y+P + RV + I+ PVGE E+YR
Sbjct: 537 DIILPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIE--PVGESMSDYEIYR 594
Query: 225 LF 226
LF
Sbjct: 595 LF 596
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 210 FSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 268
+ P E G + + FD+GG RR W F V+ ++F L +
Sbjct: 33 WHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF----------LVDAADPE 82
Query: 269 RMMETKELFDWVLKQPCFEKTSFMLFLNKFD 299
R E + D + + F++ NK D
Sbjct: 83 RFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 274
EH+ G ++DVGGQ++ R W + FE +I+ + + + R + +
Sbjct: 58 EHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW----------VVDSADRQRXQDCQ 105
Query: 275 ELFDWVLKQPCFEKTSFMLFLNKFDI 300
+L + + ++F NK D+
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRL 183
L + G +D+ ++ +E A+ ++ + DP + ET Q+P Y E LQRL
Sbjct: 234 LVGVKGDIDFTKIDRERAKKLQLEYYDPLMHETL-----FQMP---KYIRETLQRL 281
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 210 FSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIF 250
+ P E G + + FD+GG RR W F V+ ++F
Sbjct: 55 WHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 215 EHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK 274
EH+ G ++DVGG ++ R W + FE +I+ + + + RM + +
Sbjct: 41 EHR--GFKLNIWDVGGLKSLRSYWRNYFESTDGLIW----------VVDSADRQRMQDCQ 88
Query: 275 ELFDWVLKQPCFEKTSFMLFLNKFDI 300
+L + + ++F NK D+
Sbjct: 89 RELQSLLVEERLAGATLLIFANKQDL 114
>pdb|3NUA|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
pdb|3NUA|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
Length = 238
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 241 LFEGVSAVIFCA-----AISEY--DQTLFEDEQKNRMMETKELFDWVLKQPCFE------ 287
L+EG + I+ I Y D T F E+K ++ E+K + + + FE
Sbjct: 11 LYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQI-ESKGVLNNEITSLIFEMLNKEG 69
Query: 288 -KTSFMLFLNKFDIFEKKVLKVPLNVCEWFKDYQPVSTGKQ-EIENAYEFVKKKFEELYF 345
KT F+ LN D KKV VPL V ++ S K+ +E YE FE Y
Sbjct: 70 IKTHFVEKLNDRDQLCKKVEIVPLEVI--VRNVAAGSMAKRLGLEEGYELKTTVFELSYK 127
Query: 346 QSTAPDRV--------------DRVFKIYRTTALDPKLVKKTFK 375
+ D + + + KIY TA +++K+ FK
Sbjct: 128 DDSLGDPLINDYHAVGIGATTFEELNKIYEITAKVNEILKEAFK 171
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
K +++D+GGQ R W GV+A+++ + + + ++ ++
Sbjct: 64 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVY----------MIDAADREKIEASRNEL 113
Query: 278 DWVLKQPCFEKTSFMLFLNKFDI 300
+L +P + ++ NK D+
Sbjct: 114 HNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED 264
++D+GGQR R W FE +I+ I D+ FE+
Sbjct: 65 VWDIGGQRKIRPYWRSYFENTDILIY--VIDSADRKRFEE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,284,952
Number of Sequences: 62578
Number of extensions: 470603
Number of successful extensions: 1697
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1473
Number of HSP's gapped (non-prelim): 142
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)