BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016289
         (392 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3
          Length = 2925

 Score = 35.4 bits (80), Expect = 0.75,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 7    EGLPPPSS--EPQNEEQQQSTANNKKREASPAPAPAPALKSALKKPKTDSEETMPQKSLR 64
            E LPP      P +EE Q S  + +     PA  PA  L +AL  P T +EE  P  S  
Sbjct: 1479 ETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATEE--PVVSPG 1536

Query: 65   FKMTTDASDAQVIDAMQKIASHIKNPAKFG-KASKLAIQMIQAGSVKP 111
               TT     + + A Q  A   ++PA  G  AS LAI      S  P
Sbjct: 1537 PTQTTLQQPLE-LTASQLPAGPTESPASKGVTASLLAIPHTPESSSLP 1583


>sp|Q9PLC6|SYG_CHLMU Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
           GN=glyQS PE=3 SV=1
          Length = 1003

 Score = 34.3 bits (77), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 175 LFTDDSFVFSKTATRIKEAISSLPVATKD-----DDLEEAAALKDEAEKTNEDSKNKRD 228
           L T +  +F +   R KEA +SLP+++++     +DL ++ AL  ++ +  +D +N R+
Sbjct: 924 LITSEDMLFKQALERFKEATTSLPISSREYLLQLEDLSQSTALFLDSVRIADDDENIRN 982


>sp|Q5LQ75|TPIS_RUEPO Triosephosphate isomerase OS=Ruegeria pomeroyi (strain ATCC 700808
           / DSM 15171 / DSS-3) GN=tpiA PE=3 SV=1
          Length = 251

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 91  AKFGKASKLAIQMIQAGSVKPGTSGQFFAI--LEAAMSSPTSCTDPSVRADYHALFTVAQ 148
            +FG  +  AI+++  GSVKPG + + FA+  ++ A+    S T     AD+  + +  +
Sbjct: 192 GRFGSETAEAIRLLYGGSVKPGNAAEIFAVSNVDGALVGGASLT----AADFSPIVSALE 247

Query: 149 DAA 151
            AA
Sbjct: 248 QAA 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.125    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,734,393
Number of Sequences: 539616
Number of extensions: 5604294
Number of successful extensions: 27756
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 27145
Number of HSP's gapped (non-prelim): 776
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)