Query 016289
Match_columns 392
No_of_seqs 30 out of 32
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00325 algL poly(beta-D-mann 53.2 1.3E+02 0.0027 31.6 10.3 118 74-197 90-231 (359)
2 cd01040 globin Globins are hem 48.1 75 0.0016 26.0 6.5 70 75-147 63-136 (140)
3 PRK13289 bifunctional nitric o 47.0 45 0.00096 33.3 5.9 126 57-183 35-172 (399)
4 PF07586 HXXSHH: Protein of un 39.4 45 0.00096 32.7 4.5 40 307-346 161-200 (302)
5 PF07875 Coat_F: Coat F domain 37.8 31 0.00067 26.5 2.5 28 131-158 27-55 (64)
6 COG5178 PRP8 U5 snRNP spliceos 36.0 31 0.00066 41.5 3.1 11 80-90 45-55 (2365)
7 COG5178 PRP8 U5 snRNP spliceos 31.3 33 0.00072 41.2 2.4 13 32-44 21-33 (2365)
8 KOG1924 RhoA GTPase effector D 30.8 39 0.00084 39.0 2.8 40 163-205 773-812 (1102)
9 PF13983 YsaB: YsaB-like lipop 27.8 17 0.00037 30.2 -0.4 16 354-369 35-50 (77)
10 PF14024 DUF4240: Protein of u 27.3 1.1E+02 0.0025 26.7 4.6 70 101-186 7-80 (128)
11 PF09510 Rtt102p: Rtt102p-like 26.1 25 0.00055 31.6 0.4 9 375-383 116-124 (130)
12 KOG4500 Rho/Rac GTPase guanine 25.8 1.2E+02 0.0025 33.4 5.1 44 279-322 500-547 (604)
13 PRK13430 F0F1 ATP synthase sub 25.5 4E+02 0.0087 26.3 8.5 90 82-192 46-136 (271)
14 PF12317 IFT46_B_C: Intraflage 23.7 83 0.0018 30.8 3.3 48 327-375 113-160 (214)
15 KOG1925 Rac1 GTPase effector F 23.6 52 0.0011 36.4 2.1 18 38-55 259-276 (817)
16 PF08472 S6PP_C: Sucrose-6-pho 23.6 66 0.0014 29.4 2.5 57 112-170 42-98 (133)
17 PF02093 Gag_p30: Gag P30 core 22.6 1.4E+02 0.003 29.3 4.6 37 287-333 24-62 (211)
18 KOG0559 Dihydrolipoamide succi 21.7 59 0.0013 34.5 2.1 21 37-57 201-221 (457)
19 PLN03077 Protein ECB2; Provisi 20.1 5.1E+02 0.011 28.7 8.9 21 90-111 64-84 (857)
No 1
>PRK00325 algL poly(beta-D-mannuronate) lyase; Provisional
Probab=53.25 E-value=1.3e+02 Score=31.63 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=78.8
Q ss_pred HHHHHHHHHH-HhhhcCchhhhhHHHHHHHHH------HcCCCCCCChhh-------------HHHHHHHhhcCCCCCCC
Q 016289 74 AQVIDAMQKI-ASHIKNPAKFGKASKLAIQMI------QAGSVKPGTSGQ-------------FFAILEAAMSSPTSCTD 133 (392)
Q Consensus 74 ~QV~~AL~KI-~sHI~NP~KFsKAS~L~~QLi------~agsv~~~ts~~-------------fFa~LeaAMs~~~~a~d 133 (392)
++.+.-|.++ ..++.+++ ...|.|.|- ++|++...+.++ -++.|+ |.+.+...+
T Consensus 90 ~~~~~~~a~~~~~y~~~g~----~~~~~C~l~wL~aWA~adALl~~~~~~~g~~~RkWaL~a~A~a~lr--~~~~p~~~~ 163 (359)
T PRK00325 90 TRFEKGLAKMVDQYMRSGR----PGDLACALSWLDAWARADALLSKDANHTGKSMRKWALGAMAGAYLR--STSRPLAAH 163 (359)
T ss_pred HHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHhcccccCccccccchHHHHhHHHHHHHHHHh--cccccccCC
Confidence 3445555553 45555544 223555442 455555443332 456666 667777888
Q ss_pred hhhHHHHHHHHHHH-HHHH-HHcC-hhhh-chhheeeehhhhhccccCCcchhHhHHHHHHHHHHhhC
Q 016289 134 PSVRADYHALFTVA-QDAA-ECLS-KKQK-NQLSIWTFQAVVANDLFTDDSFVFSKTATRIKEAISSL 197 (392)
Q Consensus 134 ps~radY~~LF~aa-~~~a-e~fn-~kQk-~qL~vW~~~avv~NdL~TDDSFvFsKAa~rIKeaIe~L 197 (392)
+.-++.-..=|..+ +++. +.=| +-++ |--.+|.-+.|++.-+||+|.-.|..++...+..|..|
T Consensus 164 ~~q~~~ie~Wl~~LA~~v~~~~~~~~~~~~NNHg~W~~~qVaa~a~~~g~~~l~~~~~~~~~~~~~QI 231 (359)
T PRK00325 164 QAQSRAIEAWLAKLADQVVADWDNLPLEKINNHSYWAAWAVMATGVATDRRDLFDWAVKEYRVGINQI 231 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcccccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 88887766666655 4444 3323 2233 78899999999999999999999999999999988866
No 2
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=48.12 E-value=75 Score=26.00 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhcCchhhhhHHHHHHHHHHcC---CCCCCChhhHHHHHHHhhcCCCC-CCChhhHHHHHHHHHHH
Q 016289 75 QVIDAMQKIASHIKNPAKFGKASKLAIQMIQAG---SVKPGTSGQFFAILEAAMSSPTS-CTDPSVRADYHALFTVA 147 (392)
Q Consensus 75 QV~~AL~KI~sHI~NP~KFsKAS~L~~QLi~ag---sv~~~ts~~fFa~LeaAMs~~~~-a~dps~radY~~LF~aa 147 (392)
.|.++|..+..++.||.++.. ++.+|-..+ .+++.+=+.|..+|-.++..-.. .-+++...++..++...
T Consensus 63 ~~~~~l~~~v~~l~~~~~l~~---~l~~lg~~H~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~aW~~~~~~i 136 (140)
T cd01040 63 RVLNALDEAIKNLDDLEALKA---LLAKLGRKHAKRGVDPEHFKLFGEALLEVLAEVLGDDFTPEVKAAWDKLLDVI 136 (140)
T ss_pred HHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHH
Confidence 499999999999999999654 445554442 23444444455666555554432 36888999998888764
No 3
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=46.96 E-value=45 Score=33.28 Aligned_cols=126 Identities=16% Similarity=0.079 Sum_probs=75.7
Q ss_pred CCCcccceeeecc---cCChHHHHHHHHHHHhhhcCchhhhhHHHHHHHHHHcCCCCCCChhhHHHHHHHhhcCCCC-CC
Q 016289 57 TMPQKSLRFKMTT---DASDAQVIDAMQKIASHIKNPAKFGKASKLAIQMIQAGSVKPGTSGQFFAILEAAMSSPTS-CT 132 (392)
Q Consensus 57 ~~~~kr~rfktt~---das~~QV~~AL~KI~sHI~NP~KFsKAS~L~~QLi~agsv~~~ts~~fFa~LeaAMs~~~~-a~ 132 (392)
.+|.=|--|..+. ......|..+|..+..+|.|+.++.....-+..-=..=.|++++=..|..||-.+|..--. +-
T Consensus 35 ~~P~~~~~F~~~~~~~~~~~~~~~~~l~~~v~~ld~~~~l~~~l~~L~~~H~~~gV~~~~f~~~~~~ll~~l~~~~~~~~ 114 (399)
T PRK13289 35 HNPELKNIFNQSNQRNGDQPEALANAVLAYARNIDNLEALLPAVERIAQKHVSLQIKPEHYPIVGEHLLAAIREVLGDAA 114 (399)
T ss_pred hChHHHHhcCcccccchhHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCCCC
Confidence 3444445554321 1233459999999999999999886544333332222348888888888998888887654 56
Q ss_pred ChhhHHHHHHHHHHHHHHH-HH----cChhhhchhhee---eehhhhhccccCCcchhH
Q 016289 133 DPSVRADYHALFTVAQDAA-EC----LSKKQKNQLSIW---TFQAVVANDLFTDDSFVF 183 (392)
Q Consensus 133 dps~radY~~LF~aa~~~a-e~----fn~kQk~qL~vW---~~~avv~NdL~TDDSFvF 183 (392)
++++..+..+.+..+.+.. .. .+..+. .-..| .=.-|+...-.|+|.+.|
T Consensus 115 t~~~~~AW~~~~~~l~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~V~~~~~~t~~~~~~ 172 (399)
T PRK13289 115 TDEVLDAWGEAYGVLADVFIGREAEIYEEAAS-KPGGWRGWRDFRVVKKVPESEVITSF 172 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcEEEEEEEEEECCCCEEEE
Confidence 7888877777776554433 12 222111 01113 222366677788887665
No 4
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=39.41 E-value=45 Score=32.72 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhhccCCChHHHHHHHHHHHHHHHHHHHh
Q 016289 307 QTVIDILVKHAFDNVARFTSQQRDAIAKLWASIREQQNRR 346 (392)
Q Consensus 307 qT~VDilvkha~d~r~rFt~~qR~aIdkl~~sIreqr~~R 346 (392)
+.|+|.+.+-+..-+.+....+|++||.-.++||+-..+-
T Consensus 161 ~SvLD~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl 200 (302)
T PF07586_consen 161 KSVLDLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRL 200 (302)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888899999999999999999999988774
No 5
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=37.79 E-value=31 Score=26.45 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=23.8
Q ss_pred CCChhhHHHHHHHHHHHHHHH-HHcChhh
Q 016289 131 CTDPSVRADYHALFTVAQDAA-ECLSKKQ 158 (392)
Q Consensus 131 a~dps~radY~~LF~aa~~~a-e~fn~kQ 158 (392)
|.+|.||..|..++....+.+ ++|+-..
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~ 55 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMN 55 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998887 6887443
No 6
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=35.96 E-value=31 Score=41.47 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.7
Q ss_pred HHHHHhhhcCc
Q 016289 80 MQKIASHIKNP 90 (392)
Q Consensus 80 L~KI~sHI~NP 90 (392)
..+|..|++||
T Consensus 45 ~g~~~~~~g~~ 55 (2365)
T COG5178 45 VGDILGHSGNP 55 (2365)
T ss_pred hhhhhhhcCCc
Confidence 34555555554
No 7
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=31.25 E-value=33 Score=41.19 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=7.9
Q ss_pred CCCCCCCChhHHH
Q 016289 32 EASPAPAPAPALK 44 (392)
Q Consensus 32 ~~~~~~~p~~~l~ 44 (392)
++.|+|||||-+.
T Consensus 21 ps~pppPppPg~~ 33 (2365)
T COG5178 21 PSQPPPPPPPGVN 33 (2365)
T ss_pred CCCCCCccCCCcc
Confidence 3356677777664
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.83 E-value=39 Score=38.98 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=28.6
Q ss_pred heeeehhhhhccccCCcchhHhHHHHHHHHHHhhCCCCCCCcc
Q 016289 163 SIWTFQAVVANDLFTDDSFVFSKTATRIKEAISSLPVATKDDD 205 (392)
Q Consensus 163 ~vW~~~avv~NdL~TDDSFvFsKAa~rIKeaIe~Lp~ateedD 205 (392)
.|=++.-++.+=||- -+|+..+.-||=.|.+...|+||=.
T Consensus 773 ~vkrL~pRL~~ilFK---l~fse~vnniKP~i~avt~ACEE~r 812 (1102)
T KOG1924|consen 773 QVKRLRPRLSAILFK---LTFSEQVNNIKPDIVAVTAACEELR 812 (1102)
T ss_pred hccccChhHHHHHHH---hhHHHHHhhcChHHHHHHHHHHHHH
Confidence 444555666666653 5788888888888888888887643
No 9
>PF13983 YsaB: YsaB-like lipoprotein
Probab=27.84 E-value=17 Score=30.21 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=14.1
Q ss_pred CCccchHHHHHHHHhc
Q 016289 354 GKLDVNAFELLQQKYA 369 (392)
Q Consensus 354 ~k~d~tsFE~~q~~~s 369 (392)
-|+|||.||.+|--|-
T Consensus 35 q~idv~~FeqfQgSYE 50 (77)
T PF13983_consen 35 QKIDVTGFEQFQGSYE 50 (77)
T ss_pred eeEeecchhhhccceE
Confidence 5899999999998874
No 10
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=27.34 E-value=1.1e+02 Score=26.72 Aligned_cols=70 Identities=14% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHcCCC--CCCChhhHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHcChhhhchhheeeeh--hhhhcccc
Q 016289 101 IQMIQAGSV--KPGTSGQFFAILEAAMSSPTSCTDPSVRADYHALFTVAQDAAECLSKKQKNQLSIWTFQ--AVVANDLF 176 (392)
Q Consensus 101 ~QLi~agsv--~~~ts~~fFa~LeaAMs~~~~a~dps~radY~~LF~aa~~~ae~fn~kQk~qL~vW~~~--avv~NdL~ 176 (392)
=+||+. +. ..++.+.+...|+...+.-+ +.--.+|+..|... -..+.+|.+| +.+.|.-+
T Consensus 7 W~lI~~-~~~~~~~d~~~~~~~L~~~L~~l~----~~ei~~F~~~~~~~-----------~~~~~~~~lw~Aa~ii~gg~ 70 (128)
T PF14024_consen 7 WELIER-AREASGGDPDEVAEPLVELLAKLP----PEEIVAFDKILDQL-----------LDEAYTWDLWAAAYIINGGC 70 (128)
T ss_pred HHHHHH-HHhhcCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHH-----------HHHhccHHHHHHHHHHcCCC
Confidence 345554 22 34455556666666554433 44455566555532 2346677777 34556669
Q ss_pred CCcchhHhHH
Q 016289 177 TDDSFVFSKT 186 (392)
Q Consensus 177 TDDSFvFsKA 186 (392)
+||+|-+-+.
T Consensus 71 SdD~F~yFR~ 80 (128)
T PF14024_consen 71 SDDGFLYFRC 80 (128)
T ss_pred chhhHHHHHH
Confidence 9999976554
No 11
>PF09510 Rtt102p: Rtt102p-like transcription regulator protein; InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=26.08 E-value=25 Score=31.62 Aligned_cols=9 Identities=56% Similarity=0.745 Sum_probs=7.8
Q ss_pred cccccCCCc
Q 016289 375 IRRAVGSGG 383 (392)
Q Consensus 375 iR~~VG~~G 383 (392)
|||+|||+.
T Consensus 116 IRGAVGgse 124 (130)
T PF09510_consen 116 IRGAVGGSE 124 (130)
T ss_pred hhhcccCcc
Confidence 899999964
No 12
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=25.77 E-value=1.2e+02 Score=33.37 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHhhhhhcc
Q 016289 279 YKRFLKSQREALITGLEIAAHRYKTPW----CQTVIDILVKHAFDNVA 322 (392)
Q Consensus 279 ~~~~L~~rReALi~cLe~A~~ryk~~W----aqT~VDilvkha~d~r~ 322 (392)
.++-+.+|-||||..+.++.....++= ++-.+++|+||.+++|+
T Consensus 500 t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~ 547 (604)
T KOG4500|consen 500 TKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVA 547 (604)
T ss_pred HHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhh
Confidence 356678999999999999998888876 88899999999999986
No 13
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=25.52 E-value=4e+02 Score=26.25 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=58.4
Q ss_pred HHHhhhcCchhhhhH-HHHHHHHHHcCCCCCCChhhHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHcChhhhc
Q 016289 82 KIASHIKNPAKFGKA-SKLAIQMIQAGSVKPGTSGQFFAILEAAMSSPTSCTDPSVRADYHALFTVAQDAAECLSKKQKN 160 (392)
Q Consensus 82 KI~sHI~NP~KFsKA-S~L~~QLi~agsv~~~ts~~fFa~LeaAMs~~~~a~dps~radY~~LF~aa~~~ae~fn~kQk~ 160 (392)
-+..++.+|.-=+.+ .+|+-.|+.. .|.+.+-+.+..+...--+.|.--.+.--+-.-++||+.|. +++
T Consensus 46 ~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~---------e~g 115 (271)
T PRK13430 46 SLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQRWSRPRDLADALEELGVRALLASAE---------AQG 115 (271)
T ss_pred HHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHH---------HcC
Confidence 566778888764433 4677788875 68777777777777666666665555555555567777653 345
Q ss_pred hhheeeehhhhhccccCCcchhHhHHHHHHHH
Q 016289 161 QLSIWTFQAVVANDLFTDDSFVFSKTATRIKE 192 (392)
Q Consensus 161 qL~vW~~~avv~NdL~TDDSFvFsKAa~rIKe 192 (392)
+|+-| .||-|.|..++..-.+
T Consensus 116 ~ld~v-----------~~eL~~~~~~l~~~~~ 136 (271)
T PRK13430 116 ALDDV-----------EDELFRLGRILASNPE 136 (271)
T ss_pred CHHHH-----------HHHHHHHHHHHHcCHH
Confidence 55554 4777888887764333
No 14
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=23.74 E-value=83 Score=30.83 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCccCCCccchHHHHHHHHhccccccc
Q 016289 327 QQRDAIAKLWASIREQQNRRKQGKSVTGKLDVNAFELLQQKYANEKISI 375 (392)
Q Consensus 327 ~qR~aIdkl~~sIreqr~~Rkqg~s~~~k~d~tsFE~~q~~~s~~kiSi 375 (392)
..-.+||+|+.+|.+-+ |.|...+|.-..-+--.|-|-++|..+=-.+
T Consensus 113 ~n~k~Id~WI~~i~elH-r~kp~~tV~Y~~~mPdId~LMqeWP~e~Ee~ 160 (214)
T PF12317_consen 113 KNPKEIDKWIESIEELH-RSKPPPTVHYSKPMPDIDTLMQEWPPEFEEL 160 (214)
T ss_pred hCHHHHHHHHHHHHHHH-hcCCCCceecCCCCCCHHHHHHHCcHHHHHH
Confidence 44789999999999988 6678888887778888999999998764333
No 15
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=23.65 E-value=52 Score=36.43 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=10.0
Q ss_pred CChhHHHhhhcCCCCCCC
Q 016289 38 APAPALKSALKKPKTDSE 55 (392)
Q Consensus 38 ~p~~~l~s~~kr~~~~~~ 55 (392)
||||-+-.-|-.+.|.++
T Consensus 259 PPPPP~~~~L~~~v~~~~ 276 (817)
T KOG1925|consen 259 PPPPPLAAPLPHSVPDSS 276 (817)
T ss_pred CCCCCCcccCcCCCCCcc
Confidence 344445555666677554
No 16
>PF08472 S6PP_C: Sucrose-6-phosphate phosphohydrolase C-terminal; InterPro: IPR013679 This is the Sucrose-6-phosphate phosphohydrolase (S6PP or SPP) C-terminal domain [] as found in plant sucrose phosphatases. These enzymes irreversibly catalyse the last step in sucrose synthesis following the formation of Sucrose-6-Phosphate via sucrose-phosphate synthase (SPS). ; GO: 0000287 magnesium ion binding, 0050307 sucrose-phosphate phosphatase activity, 0005986 sucrose biosynthetic process
Probab=23.59 E-value=66 Score=29.40 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=45.8
Q ss_pred CChhhHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHcChhhhchhheeeehhh
Q 016289 112 GTSGQFFAILEAAMSSPTSCTDPSVRADYHALFTVAQDAAECLSKKQKNQLSIWTFQAV 170 (392)
Q Consensus 112 ~ts~~fFa~LeaAMs~~~~a~dps~radY~~LF~aa~~~ae~fn~kQk~qL~vW~~~av 170 (392)
+.++++|.-|++...+.+...-|+... +.|....+....|...+|.+++.+|+=..+
T Consensus 42 e~se~~~~~LK~~~~~~g~~vhPsGvE--~slh~~Id~Lr~~yGdkqgK~frvWVDrv~ 98 (133)
T PF08472_consen 42 ENSEEYFQRLKSVCHPNGTFVHPSGVE--KSLHDSIDALRSCYGDKQGKKFRVWVDRVR 98 (133)
T ss_pred CCcHHHHHHhhhhhccCcCEEcccccc--ccHHHHHHHHHHHhhhhcCcEEEEEEEeee
Confidence 478999999999999999877776654 236667777778999999999999975543
No 17
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=22.56 E-value=1.4e+02 Score=29.27 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHcCCCc--hHHHHHHHHHhhhhhccCCChHHHHHHH
Q 016289 287 REALITGLEIAAHRYKTPW--CQTVIDILVKHAFDNVARFTSQQRDAIA 333 (392)
Q Consensus 287 ReALi~cLe~A~~ryk~~W--aqT~VDilvkha~d~r~rFt~~qR~aId 333 (392)
=++||..|+....-|.-.| ||....+ .||.++|++|-
T Consensus 24 P~~li~lle~i~~Th~pTWdDcqqLL~~----------LfT~EEr~rI~ 62 (211)
T PF02093_consen 24 PQALISLLESIFQTHQPTWDDCQQLLQT----------LFTTEERERIL 62 (211)
T ss_dssp HHHHHHHHHHHHHHT---HHHHHHHHHH----------HS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHH----------HcCHHHHHHHH
Confidence 3579999999999999999 5665554 48888888873
No 18
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=21.72 E-value=59 Score=34.54 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=12.6
Q ss_pred CCChhHHHhhhcCCCCCCCCC
Q 016289 37 PAPAPALKSALKKPKTDSEET 57 (392)
Q Consensus 37 ~~p~~~l~s~~kr~~~~~~~~ 57 (392)
|.|++++|-..+-++|+.++.
T Consensus 201 P~~~~a~k~~v~~~~~~p~~~ 221 (457)
T KOG0559|consen 201 PVPASAKKPSVAQPKPPPSEG 221 (457)
T ss_pred CCCccccCccccCCCCCcccc
Confidence 333446666777777776643
No 19
>PLN03077 Protein ECB2; Provisional
Probab=20.10 E-value=5.1e+02 Score=28.72 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=14.9
Q ss_pred chhhhhHHHHHHHHHHcCCCCC
Q 016289 90 PAKFGKASKLAIQMIQAGSVKP 111 (392)
Q Consensus 90 P~KFsKAS~L~~QLi~agsv~~ 111 (392)
-..|..|..|+.++.+.| +.+
T Consensus 64 ~g~~~~A~~l~~~m~~~g-~~~ 84 (857)
T PLN03077 64 HGQLEQALKLLESMQELR-VPV 84 (857)
T ss_pred CCCHHHHHHHHHHHHhcC-CCC
Confidence 446778888888888875 443
Done!