Query 016290
Match_columns 392
No_of_seqs 334 out of 2053
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1684 Enoyl-CoA hydratase [L 100.0 9.5E-91 2.1E-95 654.4 29.9 359 6-367 32-395 (401)
2 PLN02851 3-hydroxyisobutyryl-C 100.0 2.8E-82 6E-87 629.1 38.7 362 9-373 39-406 (407)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 3.5E-82 7.6E-87 626.8 38.6 365 7-374 4-378 (381)
4 PLN02157 3-hydroxyisobutyryl-C 100.0 2.2E-79 4.8E-84 608.7 38.3 358 11-371 36-399 (401)
5 PLN02874 3-hydroxyisobutyryl-C 100.0 2.1E-76 4.5E-81 587.5 36.8 374 1-378 1-377 (379)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 2.4E-68 5.1E-73 523.8 31.1 336 12-356 3-342 (342)
7 PRK05862 enoyl-CoA hydratase; 100.0 1.7E-55 3.6E-60 417.8 27.8 253 11-339 3-256 (257)
8 PRK06142 enoyl-CoA hydratase; 100.0 1.7E-55 3.6E-60 421.1 27.4 260 8-339 2-272 (272)
9 PRK05809 3-hydroxybutyryl-CoA 100.0 2.8E-55 6E-60 417.0 27.3 257 9-339 1-259 (260)
10 PRK05980 enoyl-CoA hydratase; 100.0 3.7E-55 8.1E-60 416.2 27.9 254 12-337 3-260 (260)
11 PRK09076 enoyl-CoA hydratase; 100.0 4.8E-55 1E-59 414.9 28.0 252 13-339 4-257 (258)
12 PRK09674 enoyl-CoA hydratase-i 100.0 5.3E-55 1.1E-59 413.9 27.7 252 12-339 2-254 (255)
13 PRK06127 enoyl-CoA hydratase; 100.0 6.1E-55 1.3E-59 416.5 28.3 258 10-339 9-268 (269)
14 PRK07799 enoyl-CoA hydratase; 100.0 8.1E-55 1.7E-59 414.5 28.4 257 11-339 4-262 (263)
15 PRK08139 enoyl-CoA hydratase; 100.0 8.7E-55 1.9E-59 414.7 28.5 258 8-339 7-265 (266)
16 PRK08150 enoyl-CoA hydratase; 100.0 6.9E-55 1.5E-59 412.9 27.7 253 12-340 2-255 (255)
17 PRK07658 enoyl-CoA hydratase; 100.0 9.2E-55 2E-59 412.8 27.4 253 13-339 3-256 (257)
18 PLN02664 enoyl-CoA hydratase/d 100.0 9.9E-55 2.1E-59 416.3 27.7 254 14-339 10-274 (275)
19 PRK07657 enoyl-CoA hydratase; 100.0 1.2E-54 2.7E-59 412.5 27.5 254 12-339 3-259 (260)
20 TIGR02280 PaaB1 phenylacetate 100.0 1.4E-54 3E-59 411.4 27.3 253 14-339 1-255 (256)
21 PRK06563 enoyl-CoA hydratase; 100.0 1E-54 2.3E-59 411.9 26.2 252 14-339 1-254 (255)
22 PRK08258 enoyl-CoA hydratase; 100.0 2.5E-54 5.4E-59 413.9 29.1 258 10-339 15-276 (277)
23 PRK06494 enoyl-CoA hydratase; 100.0 1.7E-54 3.6E-59 411.4 27.2 253 10-339 2-258 (259)
24 PRK08140 enoyl-CoA hydratase; 100.0 2.6E-54 5.6E-59 410.8 28.3 257 10-339 2-261 (262)
25 PRK08252 enoyl-CoA hydratase; 100.0 2.5E-54 5.4E-59 409.1 27.8 250 12-339 3-253 (254)
26 PRK09245 enoyl-CoA hydratase; 100.0 2.3E-54 5E-59 412.0 27.7 256 12-339 3-265 (266)
27 PLN02600 enoyl-CoA hydratase 100.0 1.6E-54 3.4E-59 409.7 26.1 247 19-339 2-250 (251)
28 PRK08138 enoyl-CoA hydratase; 100.0 3.7E-54 8E-59 409.4 28.6 254 10-339 5-260 (261)
29 PRK05981 enoyl-CoA hydratase; 100.0 4E-54 8.6E-59 410.4 28.2 259 9-339 1-265 (266)
30 PRK05995 enoyl-CoA hydratase; 100.0 3.3E-54 7.1E-59 410.1 27.5 258 10-340 2-262 (262)
31 PRK07511 enoyl-CoA hydratase; 100.0 6.3E-54 1.4E-58 407.8 27.8 255 12-338 3-259 (260)
32 PRK07659 enoyl-CoA hydratase; 100.0 5.5E-54 1.2E-58 408.0 26.7 256 9-339 3-259 (260)
33 PRK07468 enoyl-CoA hydratase; 100.0 7.3E-54 1.6E-58 407.6 26.9 256 11-339 3-261 (262)
34 PRK09120 p-hydroxycinnamoyl Co 100.0 1.1E-53 2.4E-58 408.8 28.0 252 9-331 5-262 (275)
35 PRK05674 gamma-carboxygeranoyl 100.0 8.8E-54 1.9E-58 407.5 26.6 258 9-339 2-263 (265)
36 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.4E-53 3E-58 404.7 27.8 253 10-337 3-257 (257)
37 PRK06495 enoyl-CoA hydratase; 100.0 1.2E-53 2.7E-58 404.9 27.5 254 10-339 2-256 (257)
38 PRK06688 enoyl-CoA hydratase; 100.0 1.4E-53 3E-58 405.1 27.5 255 10-339 3-258 (259)
39 PRK07327 enoyl-CoA hydratase; 100.0 2.3E-53 4.9E-58 405.5 27.1 256 8-339 7-267 (268)
40 PRK05864 enoyl-CoA hydratase; 100.0 2.1E-53 4.6E-58 407.3 26.6 260 9-340 6-275 (276)
41 PRK06210 enoyl-CoA hydratase; 100.0 1.8E-53 3.9E-58 407.2 26.1 259 9-339 2-271 (272)
42 TIGR01929 menB naphthoate synt 100.0 2.1E-53 4.6E-58 403.7 25.7 254 12-339 2-258 (259)
43 KOG1680 Enoyl-CoA hydratase [L 100.0 6.4E-54 1.4E-58 393.9 21.2 250 14-339 39-289 (290)
44 PRK03580 carnitinyl-CoA dehydr 100.0 4.1E-53 9E-58 402.2 27.2 251 13-339 4-260 (261)
45 PRK06144 enoyl-CoA hydratase; 100.0 3.8E-53 8.3E-58 402.6 27.0 256 7-339 3-261 (262)
46 TIGR03210 badI 2-ketocyclohexa 100.0 3.2E-53 7E-58 401.8 26.1 251 12-339 2-255 (256)
47 PRK06143 enoyl-CoA hydratase; 100.0 5.2E-53 1.1E-57 400.3 26.3 249 9-331 3-254 (256)
48 PRK06072 enoyl-CoA hydratase; 100.0 8.4E-53 1.8E-57 397.2 27.1 246 14-339 2-247 (248)
49 PRK08260 enoyl-CoA hydratase; 100.0 7.2E-53 1.6E-57 407.4 26.9 257 11-340 3-278 (296)
50 PRK07260 enoyl-CoA hydratase; 100.0 9.6E-53 2.1E-57 398.5 26.6 249 12-331 2-253 (255)
51 PRK07827 enoyl-CoA hydratase; 100.0 1.7E-52 3.6E-57 397.9 28.3 256 9-338 3-259 (260)
52 PRK11423 methylmalonyl-CoA dec 100.0 9.9E-53 2.2E-57 399.5 26.6 255 9-339 1-260 (261)
53 PRK07509 enoyl-CoA hydratase; 100.0 1.8E-52 4E-57 398.1 27.7 254 11-338 2-261 (262)
54 PRK07396 dihydroxynaphthoic ac 100.0 1.6E-52 3.4E-57 400.6 27.1 256 10-339 11-268 (273)
55 PLN02888 enoyl-CoA hydratase 100.0 3E-52 6.6E-57 396.9 27.6 254 8-338 5-262 (265)
56 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3.1E-52 6.7E-57 393.8 26.6 246 14-339 3-250 (251)
57 PRK05870 enoyl-CoA hydratase; 100.0 2.1E-52 4.5E-57 394.8 24.3 243 12-328 3-247 (249)
58 PRK08259 enoyl-CoA hydratase; 100.0 3.3E-52 7.1E-57 394.4 25.6 248 12-335 3-251 (254)
59 PRK12478 enoyl-CoA hydratase; 100.0 4E-52 8.7E-57 402.0 25.2 257 9-341 2-282 (298)
60 PRK06023 enoyl-CoA hydratase; 100.0 8.7E-52 1.9E-56 391.0 25.7 243 12-328 3-249 (251)
61 PRK07854 enoyl-CoA hydratase; 100.0 1.2E-51 2.7E-56 388.0 26.6 240 14-339 2-242 (243)
62 PLN02921 naphthoate synthase 100.0 1.7E-51 3.7E-56 401.1 27.6 255 10-339 63-322 (327)
63 PRK07938 enoyl-CoA hydratase; 100.0 1.7E-51 3.7E-56 388.4 24.5 242 17-335 7-249 (249)
64 PRK07112 polyketide biosynthes 100.0 5.9E-51 1.3E-55 386.1 26.9 252 10-339 2-254 (255)
65 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.3E-51 5.1E-56 386.8 23.7 244 15-331 1-245 (245)
66 PLN03214 probable enoyl-CoA hy 100.0 5.9E-51 1.3E-55 390.3 25.8 252 8-331 7-263 (278)
67 PRK08321 naphthoate synthase; 100.0 1.5E-50 3.3E-55 391.8 27.0 256 11-339 22-297 (302)
68 PRK07110 polyketide biosynthes 100.0 1.5E-50 3.3E-55 382.0 26.2 245 9-328 2-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 6.5E-50 1.4E-54 379.2 26.8 251 9-331 1-252 (258)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 1.8E-48 3.9E-53 400.1 24.4 253 14-340 260-544 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.9E-48 8.5E-53 398.8 23.6 253 15-341 265-549 (550)
72 PRK05869 enoyl-CoA hydratase; 100.0 3.5E-47 7.6E-52 353.0 21.0 205 19-293 15-220 (222)
73 PRK08290 enoyl-CoA hydratase; 100.0 1.2E-46 2.7E-51 362.2 25.4 235 9-312 1-257 (288)
74 PRK11730 fadB multifunctional 100.0 3.6E-46 7.9E-51 398.0 27.1 284 13-331 7-297 (715)
75 PRK08272 enoyl-CoA hydratase; 100.0 1E-45 2.2E-50 358.5 25.4 219 6-294 4-246 (302)
76 PRK08788 enoyl-CoA hydratase; 100.0 8.4E-45 1.8E-49 348.0 26.2 244 14-328 19-274 (287)
77 KOG1679 Enoyl-CoA hydratase [L 100.0 3.8E-46 8.3E-51 329.1 15.5 260 10-339 25-290 (291)
78 PRK06213 enoyl-CoA hydratase; 100.0 4.6E-45 1E-49 340.6 21.4 224 12-308 3-228 (229)
79 PRK11154 fadJ multifunctional 100.0 1.3E-44 2.8E-49 386.0 27.7 282 12-331 5-294 (708)
80 TIGR03200 dearomat_oah 6-oxocy 100.0 1.3E-44 2.9E-49 350.3 24.8 275 22-331 38-328 (360)
81 TIGR02440 FadJ fatty oxidation 100.0 8.4E-44 1.8E-48 379.0 25.7 278 17-332 6-290 (699)
82 TIGR02437 FadB fatty oxidation 100.0 7.4E-43 1.6E-47 371.9 27.4 285 13-331 7-297 (714)
83 KOG1681 Enoyl-CoA isomerase [L 100.0 2.3E-43 5E-48 314.2 16.8 261 8-338 15-290 (292)
84 PLN02267 enoyl-CoA hydratase/i 100.0 6.6E-42 1.4E-46 321.1 21.2 183 14-198 2-190 (239)
85 TIGR02441 fa_ox_alpha_mit fatt 100.0 7.6E-41 1.7E-45 357.3 28.7 292 8-331 9-321 (737)
86 COG0447 MenB Dihydroxynaphthoi 100.0 2.2E-41 4.8E-46 299.5 13.2 253 9-338 15-276 (282)
87 KOG0016 Enoyl-CoA hydratase/is 100.0 5.9E-40 1.3E-44 299.0 21.8 253 9-331 4-263 (266)
88 cd06558 crotonase-like Crotona 100.0 5.8E-40 1.3E-44 298.2 19.3 190 14-203 1-191 (195)
89 KOG1682 Enoyl-CoA isomerase [L 100.0 1.4E-39 3E-44 285.5 19.9 254 12-339 32-286 (287)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 2.4E-38 5.2E-43 325.3 21.0 197 7-203 6-222 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 2E-37 4.3E-42 319.5 21.1 197 7-203 10-226 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 100.0 8.2E-29 1.8E-33 206.9 9.8 117 232-355 2-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 2.4E-18 5.1E-23 154.4 9.3 141 39-197 22-173 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.7 6.8E-18 1.5E-22 152.7 11.3 145 23-194 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 6.9E-15 1.5E-19 135.6 8.4 88 35-140 17-104 (211)
96 cd00394 Clp_protease_like Case 99.5 1.7E-13 3.7E-18 120.8 10.7 134 36-190 8-161 (161)
97 cd07022 S49_Sppa_36K_type Sign 99.4 6.8E-13 1.5E-17 122.6 11.6 93 28-141 13-108 (214)
98 TIGR00705 SppA_67K signal pept 99.4 2.2E-13 4.8E-18 142.9 9.2 157 18-192 306-510 (584)
99 cd07023 S49_Sppa_N_C Signal pe 99.4 4.2E-12 9.2E-17 116.8 11.1 100 22-141 2-101 (208)
100 cd07016 S14_ClpP_1 Caseinolyti 99.3 2.7E-12 5.9E-17 113.1 8.8 128 39-190 15-160 (160)
101 TIGR00706 SppA_dom signal pept 99.2 3.7E-11 8E-16 110.5 10.0 149 22-197 2-199 (207)
102 cd07021 Clp_protease_NfeD_like 99.1 3.6E-10 7.8E-15 101.3 11.5 140 23-193 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.1 5.8E-10 1.3E-14 103.6 10.4 90 34-142 24-113 (222)
104 cd07015 Clp_protease_NfeD Nodu 98.6 6.1E-07 1.3E-11 79.8 12.4 144 23-193 2-165 (172)
105 PRK00277 clpP ATP-dependent Cl 98.6 4E-07 8.8E-12 83.2 10.7 141 22-193 31-196 (200)
106 cd07013 S14_ClpP Caseinolytic 98.6 1.9E-07 4.2E-12 82.5 8.3 134 36-190 9-162 (162)
107 KOG1683 Hydroxyacyl-CoA dehydr 98.5 1.5E-07 3.3E-12 91.2 6.6 176 14-193 57-240 (380)
108 PRK12553 ATP-dependent Clp pro 98.3 7E-06 1.5E-10 75.5 11.7 144 22-193 35-202 (207)
109 cd07017 S14_ClpP_2 Caseinolyti 98.2 7E-06 1.5E-10 73.2 9.8 140 23-190 10-171 (171)
110 PRK10949 protease 4; Provision 98.2 1.3E-05 2.8E-10 84.9 12.6 164 19-203 325-539 (618)
111 PRK12319 acetyl-CoA carboxylas 98.2 0.00014 3.1E-09 68.8 18.2 138 33-194 76-215 (256)
112 PF00574 CLP_protease: Clp pro 98.2 8.1E-06 1.8E-10 73.4 9.3 142 24-193 18-181 (182)
113 PRK14512 ATP-dependent Clp pro 98.1 2.6E-05 5.7E-10 71.1 11.4 146 22-193 23-188 (197)
114 CHL00028 clpP ATP-dependent Cl 98.1 3.5E-05 7.7E-10 70.3 11.3 145 23-194 31-197 (200)
115 CHL00198 accA acetyl-CoA carbo 98.1 0.0003 6.5E-09 68.3 18.2 140 32-193 131-270 (322)
116 TIGR00493 clpP ATP-dependent C 98.1 6.6E-05 1.4E-09 68.2 12.3 146 21-192 25-190 (191)
117 TIGR00513 accA acetyl-CoA carb 98.1 0.0005 1.1E-08 66.7 19.0 136 33-193 129-267 (316)
118 PLN03230 acetyl-coenzyme A car 98.0 0.00098 2.1E-08 66.5 19.7 136 34-193 200-337 (431)
119 PRK05724 acetyl-CoA carboxylas 98.0 0.00066 1.4E-08 66.0 17.8 139 33-193 129-267 (319)
120 PLN03229 acetyl-coenzyme A car 97.9 0.00088 1.9E-08 70.9 19.1 139 33-193 220-358 (762)
121 PRK14514 ATP-dependent Clp pro 97.8 0.00028 6.1E-09 65.2 11.7 135 35-193 62-219 (221)
122 PRK14513 ATP-dependent Clp pro 97.7 0.00036 7.9E-09 63.7 11.4 136 35-195 35-194 (201)
123 PRK12551 ATP-dependent Clp pro 97.7 0.00053 1.2E-08 62.4 11.1 138 36-194 34-191 (196)
124 TIGR03133 malonate_beta malona 97.6 0.0014 3.1E-08 62.4 13.5 150 22-195 61-219 (274)
125 PRK11778 putative inner membra 97.5 0.00068 1.5E-08 66.3 10.7 155 19-196 89-289 (330)
126 COG0616 SppA Periplasmic serin 97.5 0.00072 1.6E-08 66.2 10.9 82 41-141 82-163 (317)
127 PRK05654 acetyl-CoA carboxylas 97.4 0.0035 7.5E-08 60.6 13.4 156 18-203 118-276 (292)
128 TIGR03134 malonate_gamma malon 97.4 0.009 2E-07 56.0 15.8 156 19-196 30-192 (238)
129 PRK07189 malonate decarboxylas 97.3 0.0037 8.1E-08 60.4 12.1 150 22-195 70-228 (301)
130 TIGR00515 accD acetyl-CoA carb 97.2 0.008 1.7E-07 57.8 14.1 157 18-203 117-275 (285)
131 COG0740 ClpP Protease subunit 97.2 0.00098 2.1E-08 60.4 6.5 143 25-196 30-195 (200)
132 CHL00174 accD acetyl-CoA carbo 97.1 0.015 3.2E-07 56.0 14.2 149 22-203 135-289 (296)
133 PRK12552 ATP-dependent Clp pro 97.1 0.0069 1.5E-07 56.0 11.5 140 35-194 48-215 (222)
134 PF01972 SDH_sah: Serine dehyd 97.0 0.0028 6.2E-08 59.8 8.1 94 34-151 70-163 (285)
135 TIGR00705 SppA_67K signal pept 97.0 0.0077 1.7E-07 63.8 12.4 85 39-141 76-160 (584)
136 PF01343 Peptidase_S49: Peptid 96.9 0.00088 1.9E-08 58.6 3.7 97 102-198 2-145 (154)
137 TIGR01117 mmdA methylmalonyl-C 96.4 0.076 1.7E-06 55.4 14.3 161 18-199 312-487 (512)
138 PRK10949 protease 4; Provision 96.2 0.075 1.6E-06 56.7 13.2 85 39-141 95-179 (618)
139 PLN02820 3-methylcrotonyl-CoA 96.1 0.052 1.1E-06 57.2 11.6 152 18-195 126-281 (569)
140 PF01039 Carboxyl_trans: Carbo 96.0 0.052 1.1E-06 56.5 10.8 138 23-195 60-207 (493)
141 TIGR01117 mmdA methylmalonyl-C 95.7 0.093 2E-06 54.8 11.1 147 19-195 80-230 (512)
142 COG0777 AccD Acetyl-CoA carbox 95.5 0.052 1.1E-06 51.2 7.6 146 22-198 124-272 (294)
143 COG1030 NfeD Membrane-bound se 95.1 0.35 7.7E-06 48.8 12.6 147 19-192 25-187 (436)
144 COG0825 AccA Acetyl-CoA carbox 94.9 0.22 4.8E-06 47.5 9.8 88 97-193 179-266 (317)
145 PLN02157 3-hydroxyisobutyryl-C 94.0 0.079 1.7E-06 53.6 5.2 64 270-339 229-295 (401)
146 KOG0840 ATP-dependent Clp prot 93.3 0.39 8.5E-06 45.0 7.9 132 36-193 101-257 (275)
147 PF01039 Carboxyl_trans: Carbo 92.9 0.95 2.1E-05 47.2 11.2 165 19-199 292-470 (493)
148 COG4799 Acetyl-CoA carboxylase 92.2 0.63 1.4E-05 48.3 8.5 105 19-137 89-194 (526)
149 PLN02820 3-methylcrotonyl-CoA 89.3 6.7 0.00015 41.6 13.2 148 34-197 380-544 (569)
150 COG4799 Acetyl-CoA carboxylase 77.6 19 0.00041 37.6 10.2 120 25-160 328-448 (526)
151 KOG0540 3-Methylcrotonyl-CoA c 73.3 31 0.00067 35.2 10.0 151 24-197 352-511 (536)
152 PF14842 FliG_N: FliG N-termin 57.9 20 0.00043 29.2 4.6 90 161-257 5-100 (108)
153 TIGR00237 xseA exodeoxyribonuc 53.4 26 0.00057 35.8 5.7 80 37-137 168-248 (432)
154 PF02601 Exonuc_VII_L: Exonucl 52.4 31 0.00068 33.5 5.8 81 37-138 53-137 (319)
155 smart00250 PLEC Plectin repeat 47.1 15 0.00032 23.8 1.8 19 171-189 17-35 (38)
156 PTZ00187 succinyl-CoA syntheta 46.5 49 0.0011 32.5 6.0 53 44-118 212-264 (317)
157 COG0074 SucD Succinyl-CoA synt 46.3 49 0.0011 31.9 5.7 73 19-118 145-240 (293)
158 TIGR00377 ant_ant_sig anti-ant 45.6 76 0.0016 24.9 6.2 49 13-66 4-52 (108)
159 PRK07194 fliG flagellar motor 43.9 2.2E+02 0.0047 28.1 10.2 158 161-328 7-181 (334)
160 COG1570 XseA Exonuclease VII, 43.1 53 0.0011 33.6 5.8 37 96-137 215-254 (440)
161 PF00681 Plectin: Plectin repe 41.9 13 0.00029 25.1 0.9 19 171-189 17-35 (45)
162 PF13607 Succ_CoA_lig: Succiny 41.1 58 0.0013 27.8 5.0 53 43-118 41-93 (138)
163 PLN02522 ATP citrate (pro-S)-l 39.8 77 0.0017 34.0 6.7 14 105-118 249-262 (608)
164 KOG4391 Predicted alpha/beta h 38.6 12 0.00026 34.8 0.4 90 105-197 146-241 (300)
165 PF00549 Ligase_CoA: CoA-ligas 37.4 68 0.0015 27.9 4.9 24 43-66 60-83 (153)
166 PRK00286 xseA exodeoxyribonucl 34.7 69 0.0015 32.7 5.3 40 96-137 214-253 (438)
167 PF01740 STAS: STAS domain; I 34.0 1.5E+02 0.0033 23.6 6.4 48 14-66 2-57 (117)
168 TIGR02886 spore_II_AA anti-sig 32.5 2.2E+02 0.0048 22.2 7.0 47 15-66 2-48 (106)
169 TIGR00207 fliG flagellar motor 30.0 5.5E+02 0.012 25.3 11.1 159 161-328 9-184 (338)
170 smart00870 Asparaginase Aspara 27.9 1.7E+02 0.0036 28.7 6.5 31 34-64 55-85 (323)
171 PF03464 eRF1_2: eRF1 domain 2 26.6 1.1E+02 0.0024 25.6 4.4 45 22-66 25-83 (133)
172 PRK05686 fliG flagellar motor 25.9 2.5E+02 0.0053 27.7 7.3 159 160-328 11-186 (339)
173 COG4565 CitB Response regulato 25.7 1.6E+02 0.0035 27.3 5.4 56 149-204 56-115 (224)
174 PF06744 DUF1215: Protein of u 25.4 3.9E+02 0.0083 22.0 8.2 38 319-359 42-79 (125)
175 cd07043 STAS_anti-anti-sigma_f 24.8 1.9E+02 0.0041 21.8 5.2 50 16-71 3-53 (99)
176 PRK14053 methyltransferase; Pr 24.2 84 0.0018 28.3 3.2 66 15-80 17-89 (194)
177 PF06833 MdcE: Malonate decarb 23.7 97 0.0021 29.0 3.7 144 33-197 40-191 (234)
178 PRK14010 potassium-transportin 22.6 2.8E+02 0.0061 30.3 7.5 97 21-136 432-547 (673)
179 KOG0960 Mitochondrial processi 22.5 1.3E+02 0.0028 30.5 4.4 52 130-183 43-96 (467)
180 PF06258 Mito_fiss_Elm1: Mitoc 22.2 6.5E+02 0.014 24.5 9.4 138 8-145 95-246 (311)
181 PRK01122 potassium-transportin 22.0 3E+02 0.0065 30.1 7.6 97 21-136 436-551 (679)
182 PF00191 Annexin: Annexin; In 21.7 2.8E+02 0.006 19.6 5.2 36 270-305 20-55 (66)
183 COG2217 ZntA Cation transport 21.2 6E+02 0.013 28.0 9.6 105 14-136 520-643 (713)
184 KOG0610 Putative serine/threon 20.7 1.8E+02 0.0038 29.8 5.0 71 56-131 150-232 (459)
185 cd04241 AAK_FomA-like AAK_FomA 20.5 1.9E+02 0.0041 26.9 5.1 37 29-68 13-49 (252)
186 COG3737 Uncharacterized conser 20.5 54 0.0012 27.3 1.2 34 327-360 37-70 (127)
187 PF14024 DUF4240: Protein of u 20.3 4.5E+02 0.0097 21.9 6.9 58 270-331 28-85 (128)
No 1
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-91 Score=654.40 Aligned_cols=359 Identities=44% Similarity=0.736 Sum_probs=334.6
Q ss_pred CCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-
Q 016290 6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN- 83 (392)
Q Consensus 6 ~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~- 83 (392)
+.....+.|+++.+++.++||||||+++||||.+|+..+...|..|+.++.+++||+.|+| |+|||||||+.......
T Consensus 32 ~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d 111 (401)
T KOG1684|consen 32 VSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKD 111 (401)
T ss_pred cccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhc
Confidence 3455567899999999999999999999999999999999999999999999999999997 99999999997665222
Q ss_pred -CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290 84 -SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (392)
Q Consensus 84 -~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~ 162 (392)
.......||+.+|.+++.|++|.||+||+|||++||||+||++|+.||||||+|.|+|||+.||+|||+|++|+|+|++
T Consensus 112 ~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlp 191 (401)
T KOG1684|consen 112 KETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLP 191 (401)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCc
Confidence 1223489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHh-ccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290 163 GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIG-LNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (392)
Q Consensus 163 G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 241 (392)
|..|+||+|||++++|.||+++||+|||||+++|+.++++|.. +...+.+.|++.|.+|+.++..+++.+....+.|++
T Consensus 192 g~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~ 271 (401)
T KOG1684|consen 192 GYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINK 271 (401)
T ss_pred cHHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999984 444444789999999999987778888889999999
Q ss_pred HhCcCCHHHHHHHHHHhh-ccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHH
Q 016290 242 CFSKETVAEIIKSFEAEA-GKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADI 320 (392)
Q Consensus 242 ~f~~~~~eei~~~l~~~~-~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~ 320 (392)
||+++||||||+.|++.. ++++++||++++++|.++||+|+++|.|+|+++..+++++|+.+|+++..+++.+ +||
T Consensus 272 ~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~---~DF 348 (401)
T KOG1684|consen 272 CFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMR---GDF 348 (401)
T ss_pred hhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cch
Confidence 999999999999997655 4477999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCccCccCc
Q 016290 321 YEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPE 367 (392)
Q Consensus 321 ~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~~l~~~~ 367 (392)
.|||||.|||||++|+|+|.++++|++++|+.||.|++...+|.+|-
T Consensus 349 ~EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~~~eLklp~ 395 (401)
T KOG1684|consen 349 CEGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPSKSELKLPV 395 (401)
T ss_pred hhhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCCcccccCch
Confidence 99999999999999999999999999999999999998888898884
No 2
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.8e-82 Score=629.11 Aligned_cols=362 Identities=42% Similarity=0.706 Sum_probs=328.9
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C-ch
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S-KD 86 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~-~~ 86 (392)
...+.|+++..+++++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+|++++..... + ..
T Consensus 39 ~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 39 DLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence 344679999999999999999999999999999999999999999999999999999999999999999875321 1 12
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG 166 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a 166 (392)
....+|+.+|++++.|.++|||+||+|||+|||||++|+++|||||||++++|+|||++||++|++|++|+|+|++|..|
T Consensus 119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g 198 (407)
T PLN02851 119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLG 198 (407)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (392)
Q Consensus 167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 246 (392)
.||+|||++++|+||+++||+||+||+++++.+.+.|.++...++..+++++++|.....+++..+...++.|++||+++
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998888888877777888999999997653334456677799999999999
Q ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCccHHHHH
Q 016290 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIYEG 323 (392)
Q Consensus 247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~eG 323 (392)
|+++|+++|+.+....+++||+++++.|.++||+|+++|+++++++...++++||++|+++..+++. + +||.||
T Consensus 279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~---~DF~EG 355 (407)
T PLN02851 279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVS---GDFCEG 355 (407)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcc---chHHHH
Confidence 9999999999743333578999999999999999999999999999999999999999999999984 6 999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCC-ccCccCcccCccc
Q 016290 324 IRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED-LELQIPENENCRW 373 (392)
Q Consensus 324 v~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~-~~l~~~~~~~~~~ 373 (392)
|||.|||||++|+|+|+++++|++++|++||.|++++ .+|+||.+.++.|
T Consensus 356 VRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~~~ 406 (407)
T PLN02851 356 VRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELPTAQREPY 406 (407)
T ss_pred HHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccCCccccccc
Confidence 9999999999999999999999999999999999653 2799987655554
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=3.5e-82 Score=626.76 Aligned_cols=365 Identities=41% Similarity=0.709 Sum_probs=329.1
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cc
Q 016290 7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SK 85 (392)
Q Consensus 7 ~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~ 85 (392)
.|++.+.|+++.+++|++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+|++++..... +.
T Consensus 4 ~~~~~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~ 83 (381)
T PLN02988 4 EMASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGN 83 (381)
T ss_pred ccccCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccc
Confidence 35667789999999999999999999999999999999999999999999999999999999999999999864221 11
Q ss_pred -hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchH
Q 016290 86 -DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH 164 (392)
Q Consensus 86 -~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~ 164 (392)
.....+|+.+|.+++.|.++|||+||+|||+|||||++|+++|||||||++++|+|||++||++|++|++++|+|++|.
T Consensus 84 ~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~ 163 (381)
T PLN02988 84 WRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163 (381)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH
Confidence 1124678888889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (392)
Q Consensus 165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~ 244 (392)
.+.||+|||++++|.||+++||||++||++++.+++.+|+++...++..+..+++.+..++...+..+...+.+|++||+
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~ 243 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFS 243 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999987767777888888998876543334455667999999999
Q ss_pred cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCccHHH
Q 016290 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIY 321 (392)
Q Consensus 245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~ 321 (392)
.+|+++|+++|+.+..+++++|++++++.|.++||+|+++|+++++++...++.+||++|+++..+++. + +||.
T Consensus 244 ~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~---~DF~ 320 (381)
T PLN02988 244 RRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEIS---KDFV 320 (381)
T ss_pred CCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC---chHH
Confidence 999999999999853333578999999999999999999999999999999999999999999999998 6 9999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCc---cCccCcc--cCcccc
Q 016290 322 EGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDL---ELQIPEN--ENCRWD 374 (392)
Q Consensus 322 eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~---~l~~~~~--~~~~~~ 374 (392)
|||||.|||||++|+|+|+++++|++++|++||+|++.++ +|+||++ .++.|.
T Consensus 321 EGVRA~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 378 (381)
T PLN02988 321 EGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPRNNLPALAI 378 (381)
T ss_pred HhHHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcccccccchhh
Confidence 9999999999999999999999999999999999997654 5999873 344443
No 4
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.2e-79 Score=608.66 Aligned_cols=358 Identities=42% Similarity=0.728 Sum_probs=319.9
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C-chhH
Q 016290 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S-KDSC 88 (392)
Q Consensus 11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~-~~~~ 88 (392)
...|+++++++|++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+||++++.... + ....
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999999999865221 1 1223
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF 168 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~ 168 (392)
..+|..+|++++.|.++|||+||+|||+|||||++|+++||+||||++++|+|||++||++|++|++++|+|++|..|+|
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|+|||++++|+||+++||||++||+++++.+.+.+.++...++..+..+++.+.......+..+....+.|+.||+.+++
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999998777666666666777788777777654222334555668999999999999
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCccHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIYEGIR 325 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~eGv~ 325 (392)
+||+++|+.+.+....+|++++++.|.++||+|+++|+++++++...++++||++|+++..+++. + +||.||||
T Consensus 276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~---~DF~EGVR 352 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMS---GNFCEGVR 352 (401)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCC---chHHHHHH
Confidence 99999998643334578999999999999999999999999999999999999999999999996 5 89999999
Q ss_pred HHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCC-CccCccCcccCc
Q 016290 326 ALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE-DLELQIPENENC 371 (392)
Q Consensus 326 a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~-~~~l~~~~~~~~ 371 (392)
|.|||||++|+|+|+++++|++++|++||.|+++ +++|+||..+++
T Consensus 353 A~LiDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~ 399 (401)
T PLN02157 353 ARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRE 399 (401)
T ss_pred HHHcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccccchhhhh
Confidence 9999999999999999999999999999999963 246888865543
No 5
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.1e-76 Score=587.54 Aligned_cols=374 Identities=78% Similarity=1.251 Sum_probs=337.0
Q ss_pred CCCCCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhcc
Q 016290 1 MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD 80 (392)
Q Consensus 1 m~~~~~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~ 80 (392)
|+|.+ ..+.++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|+|++||+|+|++++..
T Consensus 1 ~~~~~-~~~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~ 79 (379)
T PLN02874 1 MAQQV-QNPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYD 79 (379)
T ss_pred CCCCC-CCCCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHh
Confidence 66663 45667789999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhh
Q 016290 81 GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR 160 (392)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~r 160 (392)
..........++...+.+...|.+++||+||+|||+|+|||++|+++||+|||+++++|+|||+++|++|++|++++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~r 159 (379)
T PLN02874 80 GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSR 159 (379)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHh
Confidence 22112222445556667788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 016290 161 LPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240 (392)
Q Consensus 161 l~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 240 (392)
++|..+++|+|||++++|+||+++|||+++||++++.++..++.++...+...++++|++|..........+....++|+
T Consensus 160 l~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 239 (379)
T PLN02874 160 LPGHLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWIN 239 (379)
T ss_pred hhHHHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Confidence 99988999999999999999999999999999999988778888887778889999999998754444556667799999
Q ss_pred HHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH---cCCc
Q 016290 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIIS 317 (392)
Q Consensus 241 ~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~ 317 (392)
+||+.+++.+|+++|+++..++.++||.+++++|+++||.|++++|++++++...+++++++.|++...+++. +
T Consensus 240 ~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~--- 316 (379)
T PLN02874 240 ECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVS--- 316 (379)
T ss_pred HHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcC---
Confidence 9999999999999999865555679999999999999999999999999999889999999999999999888 7
Q ss_pred cHHHHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCCccCccCcccCccccCccc
Q 016290 318 ADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYE 378 (392)
Q Consensus 318 ~d~~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~~~l~~~~~~~~~~~~~~~ 378 (392)
+||+|||+||++||+|+|+|+++++++|++++|++||.|+..+.+|+||.+..++|..+|.
T Consensus 317 ~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 377 (379)
T PLN02874 317 DDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAREELQLPEEEENRWSGKYE 377 (379)
T ss_pred cchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCccccCCCccccchhhhhhc
Confidence 9999999999889989999999999999999999999999776679999887888877775
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=2.4e-68 Score=523.80 Aligned_cols=336 Identities=39% Similarity=0.702 Sum_probs=305.2
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-Cchh-H
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-SKDS-C 88 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~-~~~~-~ 88 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .... .
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3689999999999999999999999999999999999999999999999999999 99999999999764211 1111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF 168 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~ 168 (392)
..+++..++++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 24566666788899999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccC-CCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT-GDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
|+|||++++|+||+++|||+++||++++....+++.+... ...+.+..++.+|.... +...+....+.|++||+..+
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA--PASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCC--CcchhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999887777776654 34567888999988763 44578899999999999999
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+++||++|++ +.++||.+++++|+++||.|++.+|++++++...++++++..|...+..++.+ +|++||+++|
T Consensus 241 ~~~~~~~l~~----~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEA----DGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRS---PDFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHh----ccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC---CchhhccceE
Confidence 9999999999 45689999999999999999999999999998889999999999999999999 9999999999
Q ss_pred HhccCCCCCCCCCCCCCCCHHHHhcccCC
Q 016290 328 TIEKDNAPKWDPPTLDKVDDDKVDLVFQP 356 (392)
Q Consensus 328 l~dK~r~P~w~~~~l~~v~~~~v~~~f~p 356 (392)
+++|+|.|+|+++++++|++++|++||+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 86776899999999999999999999998
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-55 Score=417.83 Aligned_cols=253 Identities=26% Similarity=0.360 Sum_probs=229.4
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHH
Q 016290 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE 90 (392)
Q Consensus 11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~ 90 (392)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..... . ..
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~---~~ 78 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF-M---DV 78 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch-h---HH
Confidence 4568999999999999999999999999999999999999999999999999999999999999998754211 1 12
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (392)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L 169 (392)
+......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK05862 79 YKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDL 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 2233345677899999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (392)
Q Consensus 170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e 249 (392)
++||++++|+||+++||||++||++++.+.+.+
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~----------------------------------------------- 191 (257)
T PRK05862 159 CLTGRMMDAAEAERAGLVSRVVPADKLLDEALA----------------------------------------------- 191 (257)
T ss_pred HHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999998877654333
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 016290 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (392)
Q Consensus 250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~ 329 (392)
.+++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++|+
T Consensus 192 --------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~~~~e~i~af~- 247 (257)
T PRK05862 192 --------------------AATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT---EDQKEGMAAFV- 247 (257)
T ss_pred --------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh-
Confidence 378899999999999999999988889999999999999999999 99999999999
Q ss_pred ccCCCCCCCC
Q 016290 330 EKDNAPKWDP 339 (392)
Q Consensus 330 dK~r~P~w~~ 339 (392)
+| |+|.|++
T Consensus 248 ~k-r~p~~~~ 256 (257)
T PRK05862 248 EK-RKPVFKH 256 (257)
T ss_pred cc-CCCCCCC
Confidence 66 8999975
No 8
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-55 Score=421.13 Aligned_cols=260 Identities=23% Similarity=0.297 Sum_probs=231.8
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC----C
Q 016290 8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR----N 83 (392)
Q Consensus 8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~----~ 83 (392)
++.++.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||||.|++||+|+|++++.... .
T Consensus 2 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06142 2 MTTYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGK 81 (272)
T ss_pred CCCcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccc
Confidence 445677999999999999999999999999999999999999999999999999999999999999999875311 0
Q ss_pred -----CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHH
Q 016290 84 -----SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIH 158 (392)
Q Consensus 84 -----~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L 158 (392)
....+..+.....+++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l 161 (272)
T PRK06142 82 DGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRL 161 (272)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHH
Confidence 011122334445677888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcch-HHHHHHhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHH
Q 016290 159 SRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQ 236 (392)
Q Consensus 159 ~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (392)
+|++| ..+++|++||++++|+||+++||||++||+ +++.+.+.+
T Consensus 162 ~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~---------------------------------- 207 (272)
T PRK06142 162 PRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHA---------------------------------- 207 (272)
T ss_pred HHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHH----------------------------------
Confidence 99999 999999999999999999999999999996 666543333
Q ss_pred HHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCC
Q 016290 237 SIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAII 316 (392)
Q Consensus 237 ~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~ 316 (392)
++++|++.||.+++.+|+++++....++.+++..|......++.+
T Consensus 208 ---------------------------------~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~-- 252 (272)
T PRK06142 208 ---------------------------------TAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPS-- 252 (272)
T ss_pred ---------------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC--
Confidence 378899999999999999999888889999999999999999999
Q ss_pred ccHHHHHHHHHHhccCCCCCCCC
Q 016290 317 SADIYEGIRALTIEKDNAPKWDP 339 (392)
Q Consensus 317 ~~d~~eGv~a~l~dK~r~P~w~~ 339 (392)
+|++|||++|+ +| |+|+|++
T Consensus 253 -~d~~egv~af~-~k-r~p~~~~ 272 (272)
T PRK06142 253 -KDLTEAIAAHM-EK-RPPEFTG 272 (272)
T ss_pred -ccHHHHHHHHh-cC-CCCCCCC
Confidence 99999999999 55 8999963
No 9
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=2.8e-55 Score=417.05 Aligned_cols=257 Identities=25% Similarity=0.392 Sum_probs=232.8
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchh
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDS 87 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~ 87 (392)
|++..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~--~~ 78 (260)
T PRK05809 1 MELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE--EE 78 (260)
T ss_pred CCcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh--HH
Confidence 3466789999999999999999999999999999999999999999999999999999 99999999999864221 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG 166 (392)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a 166 (392)
...+......++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1334444456788899999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (392)
Q Consensus 167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 246 (392)
++|++||++++|+||+++||||++||++++.+.+.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 193 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAK--------------------------------------------- 193 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877664333
Q ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA 326 (392)
Q Consensus 247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a 326 (392)
+.+++|++.||.+++.+|++++.....++.++++.|.+.+..++.+ +|++||+++
T Consensus 194 ----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~egi~a 248 (260)
T PRK05809 194 ----------------------ALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFST---EDQTEGMTA 248 (260)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 3478999999999999999999988889999999999999999999 999999999
Q ss_pred HHhccCCCCCCCC
Q 016290 327 LTIEKDNAPKWDP 339 (392)
Q Consensus 327 ~l~dK~r~P~w~~ 339 (392)
|+ +| |+|+|.+
T Consensus 249 f~-~~-r~p~~~~ 259 (260)
T PRK05809 249 FV-EK-REKNFKN 259 (260)
T ss_pred Hh-cC-CCCCCCC
Confidence 98 66 8999975
No 10
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-55 Score=416.16 Aligned_cols=254 Identities=28% Similarity=0.451 Sum_probs=230.6
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC--CchhH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN--SKDSC 88 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~--~~~~~ 88 (392)
+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 3589999999999999999999999999999999999999999999999999999 89999999998754211 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
..++....+++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 455655667888999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++|+||+++||||++||++++.+.+.
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 196 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR---------------------------------------------- 196 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887765333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+.+++|++.+|.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|
T Consensus 197 ---------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af 252 (260)
T PRK05980 197 ---------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGS---ADLREGLAAW 252 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 3378899999999999999999988889999999999999999999 9999999999
Q ss_pred HhccCCCCCC
Q 016290 328 TIEKDNAPKW 337 (392)
Q Consensus 328 l~dK~r~P~w 337 (392)
+ +| |+|+|
T Consensus 253 ~-~k-r~p~~ 260 (260)
T PRK05980 253 I-ER-RRPAY 260 (260)
T ss_pred h-cc-CCCCC
Confidence 9 66 88988
No 11
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-55 Score=414.87 Aligned_cols=252 Identities=24% Similarity=0.386 Sum_probs=228.6
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHH
Q 016290 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
.|.++++++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... .....+
T Consensus 4 ~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~--~~~~~~ 80 (258)
T PRK09076 4 ELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK--AVAREM 80 (258)
T ss_pred EEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh--hhHHHH
Confidence 58899999999999999986 999999999999999999999999999999999 89999999998754211 111334
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
......++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus 81 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 81 ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 444556788899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
|||++++|+||+++||||++||++++.+.+.
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 191 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAAL------------------------------------------------- 191 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHH-------------------------------------------------
Confidence 9999999999999999999999987765333
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d 330 (392)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||+++|+ +
T Consensus 192 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~eg~~af~-~ 249 (258)
T PRK09076 192 ------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDT---EDQREGVNAFL-E 249 (258)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-c
Confidence 3378999999999999999999888889999999999999999999 99999999999 5
Q ss_pred cCCCCCCCC
Q 016290 331 KDNAPKWDP 339 (392)
Q Consensus 331 K~r~P~w~~ 339 (392)
| |+|+|++
T Consensus 250 k-r~p~~~~ 257 (258)
T PRK09076 250 K-RAPQWKN 257 (258)
T ss_pred C-CCCCCCC
Confidence 5 8999975
No 12
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=5.3e-55 Score=413.89 Aligned_cols=252 Identities=25% Similarity=0.363 Sum_probs=228.5
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.+++|++||+|||||.|++||+|+|++++..... . ..+
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~---~~~ 77 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL-A---ATL 77 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch-h---hhH
Confidence 468889999999999999999999999999999999999999999999999999999999999998754211 1 122
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
......++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ 157 (255)
T PRK09674 78 NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV 157 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 223345677899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
+||++++++||+++||||++||++++.+.+.
T Consensus 158 l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------------- 188 (255)
T PRK09674 158 LTGESITAQQAQQAGLVSEVFPPELTLERAL------------------------------------------------- 188 (255)
T ss_pred HcCCccCHHHHHHcCCCcEecChHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999887654333
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d 330 (392)
+.+++|+++||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+ +
T Consensus 189 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~i~af~-~ 246 (255)
T PRK09674 189 ------------------QLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAAT---EDRHEGISAFL-E 246 (255)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-c
Confidence 3478999999999999999999988889999999999999999999 99999999999 5
Q ss_pred cCCCCCCCC
Q 016290 331 KDNAPKWDP 339 (392)
Q Consensus 331 K~r~P~w~~ 339 (392)
| |+|+|++
T Consensus 247 k-r~p~~~~ 254 (255)
T PRK09674 247 K-RTPDFKG 254 (255)
T ss_pred c-CCCCCCC
Confidence 6 8999975
No 13
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-55 Score=416.46 Aligned_cols=258 Identities=21% Similarity=0.318 Sum_probs=233.7
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
..+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++..........
T Consensus 9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 345699999999999999999999999999999999999999999999999999999 8999999999875422211222
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
..++...+.++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++.
T Consensus 89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (269)
T PRK06127 89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK 168 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 345555567888999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++++||+++||||++||++++.+.+.++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-------------------------------------------- 204 (269)
T PRK06127 169 DLFYTARRFDAAEALRIGLVHRVTAADDLETALADY-------------------------------------------- 204 (269)
T ss_pred HHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999988876544443
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
++++++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||+++|
T Consensus 205 -----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~af 258 (269)
T PRK06127 205 -----------------------AATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDS---EDYREGRAAF 258 (269)
T ss_pred -----------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHH
Confidence 78899999999999999999988889999999999999999999 9999999999
Q ss_pred HhccCCCCCCCC
Q 016290 328 TIEKDNAPKWDP 339 (392)
Q Consensus 328 l~dK~r~P~w~~ 339 (392)
+ +| |+|+|++
T Consensus 259 ~-ek-r~p~~~~ 268 (269)
T PRK06127 259 M-EK-RKPVFKG 268 (269)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8899975
No 14
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-55 Score=414.48 Aligned_cols=257 Identities=23% Similarity=0.306 Sum_probs=226.2
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHH
Q 016290 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE 90 (392)
Q Consensus 11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~ 90 (392)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++............
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG 83 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999998643211110011
Q ss_pred HH-HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 91 VV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 91 ~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.+ ......+..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++
T Consensus 84 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 163 (263)
T PRK07799 84 SYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACD 163 (263)
T ss_pred hhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 11 11112233478999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|++||++++|+||+++||||++||++++.+.+.
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 196 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL----------------------------------------------- 196 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHH-----------------------------------------------
Confidence 999999999999999999999999988764332
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+++++|++.||.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++|+
T Consensus 197 --------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~af~ 253 (263)
T PRK07799 197 --------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLS---EDAKEGPRAFA 253 (263)
T ss_pred --------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHH
Confidence 3378999999999999999999988889999999999999999999 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|+|+.
T Consensus 254 -~~-r~p~~~~ 262 (263)
T PRK07799 254 -EK-RAPNFQG 262 (263)
T ss_pred -cc-CCCCCCC
Confidence 55 8999975
No 15
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.7e-55 Score=414.67 Aligned_cols=258 Identities=25% Similarity=0.367 Sum_probs=232.9
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290 8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS 87 (392)
Q Consensus 8 ~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~ 87 (392)
.+..+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus 7 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~ 85 (266)
T PRK08139 7 ATEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARG-LAY 85 (266)
T ss_pred cccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccc-hhH
Confidence 4455679999999999999999999999999999999999999999999999999999999999999998764221 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG 166 (392)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a 166 (392)
...++....+++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++| +++|+|++| .++
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 345556667788899999999999999999999999999999999999999999999999999865 578999999 999
Q ss_pred HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (392)
Q Consensus 167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 246 (392)
.+|++||++++|+||+++||||++||++++.+.+.++
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~------------------------------------------- 201 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARL------------------------------------------- 201 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999988877544443
Q ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA 326 (392)
Q Consensus 247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a 326 (392)
+++|++.||.+++.+|+++++....++.+++..|...+..++.+ +|++||+++
T Consensus 202 ------------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~a 254 (266)
T PRK08139 202 ------------------------AAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA---EDAEEGIDA 254 (266)
T ss_pred ------------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---chHHHHHHH
Confidence 78999999999999999999988889999999999999999999 999999999
Q ss_pred HHhccCCCCCCCC
Q 016290 327 LTIEKDNAPKWDP 339 (392)
Q Consensus 327 ~l~dK~r~P~w~~ 339 (392)
|+ +| |+|+|.+
T Consensus 255 f~-~k-r~p~~~~ 265 (266)
T PRK08139 255 FL-EK-RPPEWRG 265 (266)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 66 8999975
No 16
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-55 Score=412.91 Aligned_cols=253 Identities=25% Similarity=0.310 Sum_probs=228.3
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.++ +++++|||||.|++||+|+|++++..... .....+
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~--~~~~~~ 77 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA--GEGMHH 77 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc--hhHHHH
Confidence 46889999999999999999999999999999999999987 78999999999999999999999854211 111334
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
+...++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 157 (255)
T PRK08150 78 SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMM 157 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 455567788899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
|||++++|+||+++||||++||++++.+.+.+
T Consensus 158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------ 189 (255)
T PRK08150 158 LTGRVYDAQEGERLGLAQYLVPAGEALDKAME------------------------------------------------ 189 (255)
T ss_pred HcCCcCCHHHHHHcCCccEeeCchHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887654433
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d 330 (392)
++++|+++||.+++.+|++++.....++++.+..|...+..++.+ +|++||+++|+ +
T Consensus 190 -------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~-~ 246 (255)
T PRK08150 190 -------------------LARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSA---PEAKERLRAFL-E 246 (255)
T ss_pred -------------------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-c
Confidence 378999999999999999999988889999999999988888888 99999999999 6
Q ss_pred cCCCCCCCCC
Q 016290 331 KDNAPKWDPP 340 (392)
Q Consensus 331 K~r~P~w~~~ 340 (392)
| |+|+|+++
T Consensus 247 k-r~p~~~~~ 255 (255)
T PRK08150 247 K-KAAKVKPP 255 (255)
T ss_pred c-CCCCCCCC
Confidence 6 89999863
No 17
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.2e-55 Score=412.81 Aligned_cols=253 Identities=27% Similarity=0.402 Sum_probs=229.6
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHH
Q 016290 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV 92 (392)
Q Consensus 13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~ 92 (392)
.|.++++++|++||||||++ |+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ......+.
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~ 80 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELA 80 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHH
Confidence 67889999999999999986 99999999999999999999999999999999999999999998854221 11223444
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290 93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (392)
Q Consensus 93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l 171 (392)
.....++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus 81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK07658 81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML 160 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 55567888999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251 (392)
Q Consensus 172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei 251 (392)
||++++++||+++||||++||++++.+.+.
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 190 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEETLLDDAK-------------------------------------------------- 190 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChhHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887765333
Q ss_pred HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
+++++|++.||.+++.+|++++.+...++.+.++.|...+..++.+ +|++||+++|+ +|
T Consensus 191 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~egi~af~-~k 249 (257)
T PRK07658 191 -----------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTS---EDAKEGVQAFL-EK 249 (257)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH-cC
Confidence 3378899999999999999999988889999999999999999999 99999999999 56
Q ss_pred CCCCCCCC
Q 016290 332 DNAPKWDP 339 (392)
Q Consensus 332 ~r~P~w~~ 339 (392)
|+|+|++
T Consensus 250 -r~p~~~~ 256 (257)
T PRK07658 250 -RKPSFSG 256 (257)
T ss_pred -CCCCCCC
Confidence 8999975
No 18
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=9.9e-55 Score=416.30 Aligned_cols=254 Identities=24% Similarity=0.321 Sum_probs=225.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-----C----
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-----S---- 84 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-----~---- 84 (392)
+..+.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++..... .
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 3445589999999999999999999999999999999999999999999999999999999998754211 0
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290 85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG- 163 (392)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G- 163 (392)
......++....+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 0112334444456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290 164 HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242 (392)
Q Consensus 164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 242 (392)
.++++|+|||++++|+||+++||||++||+ +++.+.+.
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~----------------------------------------- 208 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR----------------------------------------- 208 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence 999999999999999999999999999995 66654333
Q ss_pred hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290 243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE 322 (392)
Q Consensus 243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (392)
+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++|
T Consensus 209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e 259 (275)
T PLN02664 209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVS---DDLNE 259 (275)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---hhHHH
Confidence 3378999999999999999999988889999999999999888888 99999
Q ss_pred HHHHHHhccCCCCCCCC
Q 016290 323 GIRALTIEKDNAPKWDP 339 (392)
Q Consensus 323 Gv~a~l~dK~r~P~w~~ 339 (392)
|+++|+ +| |+|.|++
T Consensus 260 g~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 260 AVSAQI-QK-RKPVFAK 274 (275)
T ss_pred HHHHHh-cc-CCCCCCC
Confidence 999999 66 8999975
No 19
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-54 Score=412.51 Aligned_cols=254 Identities=24% Similarity=0.361 Sum_probs=231.8
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHH
Q 016290 12 QVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL 89 (392)
Q Consensus 12 ~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~ 89 (392)
+.|++++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~--~~~~~ 80 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN--EEQVR 80 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC--hhhHH
Confidence 4788886 789999999999999999999999999999999999999999999999 6999999999975421 12234
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~ 160 (260)
T PRK07657 81 HAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 160 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 55556677888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|++||++++|+||+++||||++||++++.+.+.++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------- 195 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEI--------------------------------------------- 195 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999988876544433
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+++|+..+|.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+
T Consensus 196 ----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~ 250 (260)
T PRK07657 196 ----------------------AEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPT---KDRLEGLQAFK 250 (260)
T ss_pred ----------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HhHHHHHHHHh
Confidence 78899999999999999999988889999999999999999999 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|+|+.
T Consensus 251 -~~-r~~~~~~ 259 (260)
T PRK07657 251 -EK-RKPMYKG 259 (260)
T ss_pred -cC-CCCCCCC
Confidence 66 8999975
No 20
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.4e-54 Score=411.35 Aligned_cols=253 Identities=27% Similarity=0.364 Sum_probs=225.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH-HHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC-LEVV 92 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~-~~~~ 92 (392)
|+++++++|++||||||+++|+||.+|+.+|.++++.++.|+ +++|||||.|++||+|+|++++.......... ..+.
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE 79 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence 468889999999999999999999999999999999999998 99999999999999999999976421111111 1122
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290 93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (392)
Q Consensus 93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l 171 (392)
.....+...|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus 80 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l 159 (256)
T TIGR02280 80 TFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAM 159 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHH
Confidence 22245677899999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251 (392)
Q Consensus 172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei 251 (392)
||++++|+||+++|||+++||++++.+.+.+
T Consensus 160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------- 190 (256)
T TIGR02280 160 LGEKLDARTAASWGLIWQVVDDAALMDEAQA------------------------------------------------- 190 (256)
T ss_pred cCCCCCHHHHHHcCCcceeeChHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999998877654333
Q ss_pred HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+ +|
T Consensus 191 ------------------~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k 248 (256)
T TIGR02280 191 ------------------LAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRS---ADYAEGVTAFL-DK 248 (256)
T ss_pred ------------------HHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHH-cC
Confidence 378999999999999999999988889999999999999999999 99999999999 56
Q ss_pred CCCCCCCC
Q 016290 332 DNAPKWDP 339 (392)
Q Consensus 332 ~r~P~w~~ 339 (392)
|+|+|++
T Consensus 249 -r~p~~~~ 255 (256)
T TIGR02280 249 -RNPQFTG 255 (256)
T ss_pred -CCCCCCC
Confidence 8999975
No 21
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-54 Score=411.92 Aligned_cols=252 Identities=22% Similarity=0.273 Sum_probs=223.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++........ ..++.
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~ 78 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG--FPFPE 78 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccch--hhhhh
Confidence 5678899999999999999999999999999999999999999999999999999999999998854211111 12222
Q ss_pred HHHHHH-HHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290 94 RMYWLC-HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (392)
Q Consensus 94 ~~~~l~-~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l 171 (392)
...+.+ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 222222 3578999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHH
Q 016290 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251 (392)
Q Consensus 172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei 251 (392)
||++++++||+++||||++||++++.+.+.
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 188 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAI-------------------------------------------------- 188 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887754333
Q ss_pred HHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 252 ~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
+.+++|++.||.+++.+|++++.....++.++++.|...+..++.+ +|++||+++|+ +|
T Consensus 189 -----------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k 247 (255)
T PRK06563 189 -----------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTS---EDAKEGVQAFL-ER 247 (255)
T ss_pred -----------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-cC
Confidence 3378899999999999999999888889999999999999999999 99999999999 66
Q ss_pred CCCCCCCC
Q 016290 332 DNAPKWDP 339 (392)
Q Consensus 332 ~r~P~w~~ 339 (392)
|+|.|++
T Consensus 248 -r~p~~~~ 254 (255)
T PRK06563 248 -RPARFKG 254 (255)
T ss_pred -CCCCCCC
Confidence 8899975
No 22
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-54 Score=413.91 Aligned_cols=258 Identities=19% Similarity=0.252 Sum_probs=231.5
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC--Cchh
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN--SKDS 87 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~--~~~~ 87 (392)
....|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ....
T Consensus 15 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~ 94 (277)
T PRK08258 15 EARHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPE 94 (277)
T ss_pred cccceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhH
Confidence 33468999999999999999999999999999999999999999999999999999999999999998753211 1112
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccC-CchhHHHHhhcch-HH
Q 016290 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT-DCGFSFIHSRLPG-HL 165 (392)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P-~~G~s~~L~rl~G-~~ 165 (392)
...+.....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|++| ..
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~ 174 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR 174 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence 234444456788899999999999999999999999999999999999999999999999995 8899999999999 89
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+++|+|||++++|+||+++||||++||++++.+.+.+
T Consensus 175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------- 211 (277)
T PRK08258 175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQA------------------------------------------- 211 (277)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999998877654333
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (392)
++++|++.||.+++.+|++++.....++++.+..|...+..++.+ +|++||++
T Consensus 212 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~eg~~ 264 (277)
T PRK08258 212 ------------------------LARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQT---EDFRRAYE 264 (277)
T ss_pred ------------------------HHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC---chHHHHHH
Confidence 378999999999999999999988889999999999999999999 99999999
Q ss_pred HHHhccCCCCCCCC
Q 016290 326 ALTIEKDNAPKWDP 339 (392)
Q Consensus 326 a~l~dK~r~P~w~~ 339 (392)
+|+ +| |+|+|++
T Consensus 265 af~-ek-r~p~~~~ 276 (277)
T PRK08258 265 AFV-AK-RKPVFEG 276 (277)
T ss_pred HHh-cC-CCCCCCC
Confidence 999 66 8999975
No 23
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-54 Score=411.37 Aligned_cols=253 Identities=28% Similarity=0.390 Sum_probs=223.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
++..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.........
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~- 80 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP- 80 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh-
Confidence 456789999999999999999999999999999999999999999999999999999 899999999987542111111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
...+ ..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus 81 ~~~~---~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 156 (259)
T PRK06494 81 ESGF---GGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAM 156 (259)
T ss_pred hHHH---HHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHH
Confidence 1111 222 3345899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++|+||+++||||++||++++.+.+.+
T Consensus 157 ~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------- 191 (259)
T PRK06494 157 GMILTGRRVTAREGLELGFVNEVVPAGELLAAAER--------------------------------------------- 191 (259)
T ss_pred HHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998877654333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHH--HHHHHHHHHcCCccHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKE--FRLTINILRAIISADIYEGIR 325 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E--~~~~~~~~~~~~~~d~~eGv~ 325 (392)
.+++|++.||.+++.+|+++++....++.+++..| ...+..++.+ +|++||++
T Consensus 192 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~eg~~ 246 (259)
T PRK06494 192 ----------------------WADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRAS---QDYIEGPK 246 (259)
T ss_pred ----------------------HHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC---ccHHHHHH
Confidence 37899999999999999999998888999999999 5677888888 99999999
Q ss_pred HHHhccCCCCCCCC
Q 016290 326 ALTIEKDNAPKWDP 339 (392)
Q Consensus 326 a~l~dK~r~P~w~~ 339 (392)
+|+ +| |+|+|++
T Consensus 247 af~-~k-r~p~~~~ 258 (259)
T PRK06494 247 AFA-EK-RPPRWKG 258 (259)
T ss_pred HHH-cc-CCCCCCC
Confidence 999 56 8999975
No 24
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-54 Score=410.83 Aligned_cols=257 Identities=26% Similarity=0.330 Sum_probs=228.5
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC 88 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~ 88 (392)
+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++ |+++++|||+|+|++||+|+|++++..... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (262)
T PRK08140 2 MYETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL 80 (262)
T ss_pred CCceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence 3557899999999999999999999999999999999999999 999999999999999999999998753211 11111
Q ss_pred HHHHHH-HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHH
Q 016290 89 LEVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG 166 (392)
Q Consensus 89 ~~~~~~-~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a 166 (392)
...+.. ...++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 160 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHH
Confidence 112222 234678899999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcC
Q 016290 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (392)
Q Consensus 167 ~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 246 (392)
++|++||++++++||+++||||++||++++.+.+.
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 195 (262)
T PRK08140 161 LGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ--------------------------------------------- 195 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999887765333
Q ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA 326 (392)
Q Consensus 247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a 326 (392)
+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++
T Consensus 196 ----------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~a 250 (262)
T PRK08140 196 ----------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRS---ADYAEGVSA 250 (262)
T ss_pred ----------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcC---hhHHHHHHH
Confidence 3378999999999999999999888889999999999999999999 999999999
Q ss_pred HHhccCCCCCCCC
Q 016290 327 LTIEKDNAPKWDP 339 (392)
Q Consensus 327 ~l~dK~r~P~w~~ 339 (392)
|+ +| |+|.|.+
T Consensus 251 f~-~k-r~p~~~~ 261 (262)
T PRK08140 251 FL-EK-RAPRFTG 261 (262)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 56 8999975
No 25
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-54 Score=409.07 Aligned_cols=250 Identities=26% Similarity=0.347 Sum_probs=222.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++..... .......
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 81 (254)
T PRK08252 3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER-PSIPGRG 81 (254)
T ss_pred ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc-hhhhHHH
Confidence 458899999999999999999999999999999999999999999999999999999999999999864211 1111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
+ ..+. ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus 82 ~---~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 156 (254)
T PRK08252 82 F---GGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELA 156 (254)
T ss_pred H---HHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHH
Confidence 1 1221 24799999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
+||++++++||+++||||++||++++.+.+.
T Consensus 157 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 187 (254)
T PRK08252 157 LTGDMLTAERAHELGLVNRLTEPGQALDAAL------------------------------------------------- 187 (254)
T ss_pred HcCCccCHHHHHHcCCcceecCcchHHHHHH-------------------------------------------------
Confidence 9999999999999999999999887765333
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d 330 (392)
+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+ +
T Consensus 188 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~eg~~af~-~ 245 (254)
T PRK08252 188 ------------------ELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTS---ADAKEGATAFA-E 245 (254)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-c
Confidence 3478899999999999999999888889999999999999999999 99999999999 5
Q ss_pred cCCCCCCCC
Q 016290 331 KDNAPKWDP 339 (392)
Q Consensus 331 K~r~P~w~~ 339 (392)
| |+|+|..
T Consensus 246 k-r~p~~~~ 253 (254)
T PRK08252 246 K-RAPVWTG 253 (254)
T ss_pred C-CCCCCCC
Confidence 6 8999975
No 26
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-54 Score=412.02 Aligned_cols=256 Identities=23% Similarity=0.347 Sum_probs=228.6
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC----Cch
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISS-KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN----SKD 86 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~-~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~----~~~ 86 (392)
+.|.++++++|++||||||+++|+||. +|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (266)
T PRK09245 3 DFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA 82 (266)
T ss_pred CceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence 358999999999999999999999995 999999999999999999999999999999999999999854211 011
Q ss_pred hHHHHH-HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290 87 SCLEVV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H 164 (392)
Q Consensus 87 ~~~~~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~ 164 (392)
.....+ .....++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 162 (266)
T PRK09245 83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMA 162 (266)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHH
Confidence 112222 23456778899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (392)
Q Consensus 165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~ 244 (392)
.+++|++||++++|+||+++||||++||++++.+.+.+
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------ 200 (266)
T PRK09245 163 RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARA------------------------------------------ 200 (266)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999998877654333
Q ss_pred cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (392)
Q Consensus 245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (392)
++++|++.||.+++.+|++++.....++.+.+..|......++.+ +|++||+
T Consensus 201 -------------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~ 252 (266)
T PRK09245 201 -------------------------LAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHT---ADHREAV 252 (266)
T ss_pred -------------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HhHHHHH
Confidence 378999999999999999999988888999999999999999999 9999999
Q ss_pred HHHHhccCCCCCCCC
Q 016290 325 RALTIEKDNAPKWDP 339 (392)
Q Consensus 325 ~a~l~dK~r~P~w~~ 339 (392)
++|+ +| |+|.|+.
T Consensus 253 ~af~-~k-r~p~~~~ 265 (266)
T PRK09245 253 DAFL-EK-RPPVFTG 265 (266)
T ss_pred HHHH-cC-CCCCCCC
Confidence 9999 66 8999975
No 27
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.6e-54 Score=409.69 Aligned_cols=247 Identities=24% Similarity=0.372 Sum_probs=225.2
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++.... ......++.....
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~--~~~~~~~~~~~~~ 79 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMS--PSEVQKFVNSLRS 79 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccC--hHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999985 9999999999875421 1222445555667
Q ss_pred HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcc
Q 016290 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARL 176 (392)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l 176 (392)
++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+|||+++
T Consensus 80 ~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 80 TFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred HHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 888999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHH
Q 016290 177 NGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFE 256 (392)
Q Consensus 177 ~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~ 256 (392)
+++||+++||||++||++++.+.+.
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------------------- 184 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKAL------------------------------------------------------- 184 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHH-------------------------------------------------------
Confidence 9999999999999999887765333
Q ss_pred HhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCCCCC
Q 016290 257 AEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPK 336 (392)
Q Consensus 257 ~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r~P~ 336 (392)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||+++|+ +| |+|+
T Consensus 185 ------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-ek-r~p~ 247 (251)
T PLN02600 185 ------------ELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKT---KDRLEGLAAFA-EK-RKPV 247 (251)
T ss_pred ------------HHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-cC-CCCC
Confidence 3478999999999999999999888889999999999999999999 99999999999 66 8999
Q ss_pred CCC
Q 016290 337 WDP 339 (392)
Q Consensus 337 w~~ 339 (392)
|++
T Consensus 248 ~~~ 250 (251)
T PLN02600 248 YTG 250 (251)
T ss_pred CCC
Confidence 975
No 28
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-54 Score=409.44 Aligned_cols=254 Identities=26% Similarity=0.350 Sum_probs=229.3
Q ss_pred CCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290 10 DEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 10 ~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
..+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~----~ 80 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA----I 80 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch----h
Confidence 345678887 78999999999999999999999999999999999999999999999999999999998764211 1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
..+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 160 (261)
T PRK08138 81 EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAM 160 (261)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHH
Confidence 233344566788899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|+|||++++++||+++||||++||++++.+.+.++
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-------------------------------------------- 196 (261)
T PRK08138 161 RMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALEL-------------------------------------------- 196 (261)
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999988776533333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++|
T Consensus 197 -----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~i~af 250 (261)
T PRK08138 197 -----------------------AREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDS---EDQKEGMDAF 250 (261)
T ss_pred -----------------------HHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 67888999999999999999988889999999999999999999 9999999999
Q ss_pred HhccCCCCCCCC
Q 016290 328 TIEKDNAPKWDP 339 (392)
Q Consensus 328 l~dK~r~P~w~~ 339 (392)
+ +| |+|+|.+
T Consensus 251 ~-~k-r~~~~~~ 260 (261)
T PRK08138 251 L-EK-RKPAYKG 260 (261)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8999975
No 29
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-54 Score=410.43 Aligned_cols=259 Identities=20% Similarity=0.266 Sum_probs=231.1
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCC-CceEEEEEcCCCccccCCCchhhccCCCCc--
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDD-QAKLVIVKGVGRAFSAGGDLKMFYDGRNSK-- 85 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~-~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~-- 85 (392)
|+++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+ ++++|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (266)
T PRK05981 1 MQFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDS 80 (266)
T ss_pred CCcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccc
Confidence 35678999999999999999999999999999999999999999876 499999999999999999999976421100
Q ss_pred --hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch
Q 016290 86 --DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG 163 (392)
Q Consensus 86 --~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G 163 (392)
.....+......+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg 160 (266)
T PRK05981 81 GGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVG 160 (266)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhH
Confidence 111233344567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290 164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242 (392)
Q Consensus 164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 242 (392)
..+++|++||++++|+||+++|||+++||++++.+.+.
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~----------------------------------------- 199 (266)
T PRK05981 161 KARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM----------------------------------------- 199 (266)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH-----------------------------------------
Confidence 89999999999999999999999999999887765333
Q ss_pred hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290 243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE 322 (392)
Q Consensus 243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (392)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++|
T Consensus 200 --------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e 250 (266)
T PRK05981 200 --------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKT---EDFKE 250 (266)
T ss_pred --------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcC---hhHHH
Confidence 3378899999999999999999888889999999999999999999 99999
Q ss_pred HHHHHHhccCCCCCCCC
Q 016290 323 GIRALTIEKDNAPKWDP 339 (392)
Q Consensus 323 Gv~a~l~dK~r~P~w~~ 339 (392)
|+++|+ +| |+|+|++
T Consensus 251 ~~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 251 GVGAFL-QK-RPAQFKG 265 (266)
T ss_pred HHHHHh-cC-CCCCCCC
Confidence 999999 66 8999975
No 30
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-54 Score=410.11 Aligned_cols=258 Identities=26% Similarity=0.362 Sum_probs=228.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC 88 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~ 88 (392)
+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||+|++||+|+|++++..... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN 81 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999998753211 11111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
...+...+.++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++ |+|++| ..++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 22234456788899999999999999999999999999999999999999999999999999988765 888999 9999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++|+||+++||||++||++++.+.+.++
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-------------------------------------------- 196 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDEL-------------------------------------------- 196 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999988776544433
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKEFRLTINILRAIISADIYEGIRA 326 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E~~~~~~~~~~~~~~d~~eGv~a 326 (392)
+++|++.||.+++.+|++++.....++.+. +..|...+..++.+ +|++||+++
T Consensus 197 -----------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~a 250 (262)
T PRK05995 197 -----------------------LAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRAT---EEAREGVAA 250 (262)
T ss_pred -----------------------HHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 789999999999999999998877889888 88888888888889 999999999
Q ss_pred HHhccCCCCCCCCC
Q 016290 327 LTIEKDNAPKWDPP 340 (392)
Q Consensus 327 ~l~dK~r~P~w~~~ 340 (392)
|+ +| |+|+|+++
T Consensus 251 f~-~k-r~p~~~~~ 262 (262)
T PRK05995 251 FL-EK-RKPAWRGR 262 (262)
T ss_pred Hh-cC-CCCCCCCC
Confidence 99 66 89999763
No 31
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-54 Score=407.75 Aligned_cols=255 Identities=24% Similarity=0.332 Sum_probs=231.2
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSCLE 90 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~~~ 90 (392)
.+|.++++++|++||||||+++|+||.+|+.+|.++|+.+++|++|++|||+|.|++||+|+|++++..... .......
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA 82 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence 358899999999999999999999999999999999999999999999999999999999999999864211 1122245
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (392)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L 169 (392)
++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 162 (260)
T PRK07511 83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATEL 162 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHH
Confidence 5666678888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (392)
Q Consensus 170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e 249 (392)
++||++++++||+++||||++||++++.+.+.
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------------ 194 (260)
T PRK07511 163 LLEGKPISAERLHALGVVNRLAEPGQALAEAL------------------------------------------------ 194 (260)
T ss_pred HHhCCCCCHHHHHHcCCccEeeCchHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887654332
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 016290 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (392)
Q Consensus 250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~ 329 (392)
+.+++|++.||.+++.+|++++.+...++.+++..|...+..++.+ +|+++|+++|+
T Consensus 195 -------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~i~~f~- 251 (260)
T PRK07511 195 -------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHH---ADALEGIAAFL- 251 (260)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-
Confidence 2378899999999999999999988889999999999999999999 99999999999
Q ss_pred ccCCCCCCC
Q 016290 330 EKDNAPKWD 338 (392)
Q Consensus 330 dK~r~P~w~ 338 (392)
+| |+|.|.
T Consensus 252 ~~-r~~~~~ 259 (260)
T PRK07511 252 EK-RAPDYK 259 (260)
T ss_pred cc-CCCCCC
Confidence 55 889995
No 32
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-54 Score=408.05 Aligned_cols=256 Identities=23% Similarity=0.339 Sum_probs=231.6
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
+++..|.++.+++|++||||||+++|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++..... ....
T Consensus 3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~ 80 (260)
T PRK07659 3 SKMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSND-ESKF 80 (260)
T ss_pred CCCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccC-chhH
Confidence 4456799999999999999999999999999999999999999 5889999999999999999999999864221 1223
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
..++...++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~ 160 (260)
T PRK07659 81 DGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAK 160 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHH
Confidence 456666677888999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++|+||+++||||++| ++++.+.+.
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~---------------------------------------------- 193 (260)
T PRK07659 161 QIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAK---------------------------------------------- 193 (260)
T ss_pred HHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHH----------------------------------------------
Confidence 999999999999999999999999 666654333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+++++|++.||.+++.+|++++.....++++.+..|...+..++.+ +|++||+++|
T Consensus 194 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~af 249 (260)
T PRK07659 194 ---------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQT---ADHKEGIRAF 249 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HhHHHHHHHH
Confidence 3378899999999999999999988889999999999999999999 9999999999
Q ss_pred HhccCCCCCCCC
Q 016290 328 TIEKDNAPKWDP 339 (392)
Q Consensus 328 l~dK~r~P~w~~ 339 (392)
+ +| |+|+|++
T Consensus 250 ~-~k-r~p~~~~ 259 (260)
T PRK07659 250 L-EK-RLPVFKG 259 (260)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8999975
No 33
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-54 Score=407.62 Aligned_cols=256 Identities=20% Similarity=0.329 Sum_probs=225.3
Q ss_pred CCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-CchhH
Q 016290 11 EQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC 88 (392)
Q Consensus 11 ~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~~~ 88 (392)
++.|.++++ ++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR 82 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence 456888885 6899999999999999999999999999999999999999999999999999999998753211 11111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
...+.....++..|..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++| +| .+++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~ 161 (262)
T PRK07468 83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANAR 161 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHH
Confidence 223444566788999999999999999999999999999999999999999999999999999999987766 78 9999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++++||+++||||++||.+++.+.+.+
T Consensus 162 ~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~--------------------------------------------- 196 (262)
T PRK07468 162 RVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEA--------------------------------------------- 196 (262)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998776653333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
++++|++.||.+++.+|++++......+.+.+..|...+..++.+ +|++||+++|
T Consensus 197 ----------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e~~~af 251 (262)
T PRK07468 197 ----------------------EVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWET---EEAREGIAAF 251 (262)
T ss_pred ----------------------HHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 378899999999999999999876677899999999999999999 9999999999
Q ss_pred HhccCCCCCCCC
Q 016290 328 TIEKDNAPKWDP 339 (392)
Q Consensus 328 l~dK~r~P~w~~ 339 (392)
+ +| |+|+|..
T Consensus 252 ~-~k-r~~~~~~ 261 (262)
T PRK07468 252 F-DK-RAPAWRG 261 (262)
T ss_pred H-cC-CCCCCCC
Confidence 9 66 8999964
No 34
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.1e-53 Score=408.83 Aligned_cols=252 Identities=23% Similarity=0.353 Sum_probs=223.0
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cch-
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKD- 86 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~- 86 (392)
..+..|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus 5 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 84 (275)
T PRK09120 5 NRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEI 84 (275)
T ss_pred cccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhH
Confidence 346779999999999999999999999999999999999999999999999999999999999999998754211 111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
....+....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 11233344566788899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+++|++||++++|+||+++||||++||++++.+.+.++
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------ 202 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTREL------------------------------------------ 202 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999998887644433
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHH--HHHHHHcCCcc-HHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL--TINILRAIISA-DIYE 322 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~--~~~~~~~~~~~-d~~e 322 (392)
+++|++.||.+++.+|++++.....++.+.+..|... ...++.+ + |++|
T Consensus 203 -------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~d~~e 254 (275)
T PRK09120 203 -------------------------AAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDP---EGGREE 254 (275)
T ss_pred -------------------------HHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCC---HHHHHH
Confidence 7899999999999999999998888999999887653 4445777 8 8999
Q ss_pred HHHHHHhcc
Q 016290 323 GIRALTIEK 331 (392)
Q Consensus 323 Gv~a~l~dK 331 (392)
|+++|+ +|
T Consensus 255 g~~afl-~k 262 (275)
T PRK09120 255 GLKQFL-DD 262 (275)
T ss_pred HHHHHH-hc
Confidence 999999 44
No 35
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.8e-54 Score=407.53 Aligned_cols=258 Identities=22% Similarity=0.327 Sum_probs=224.0
Q ss_pred CCCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-Cch
Q 016290 9 PDEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKD 86 (392)
Q Consensus 9 ~~~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~~~ 86 (392)
+.++.|.++.+ ++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus 2 ~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 81 (265)
T PRK05674 2 SDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYN 81 (265)
T ss_pred CCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 44778999985 7899999999999999999999999999999999999999999999999999999998753211 000
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
.........+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++| .+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~~ 160 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGERA 160 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHHH
Confidence 1112233446788889999999999999999999999999999999999999999999999999987764 888899 99
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+++|+|||++++|+||+++|||+++||.+++.+.+.+
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------- 197 (265)
T PRK05674 161 ARRYALTAERFDGRRARELGLLAESYPAAELEAQVEA------------------------------------------- 197 (265)
T ss_pred HHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999998777654333
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHH-HHHHHHHHHHcCCccHHHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKK-EFRLTINILRAIISADIYEGI 324 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~-E~~~~~~~~~~~~~~d~~eGv 324 (392)
.+++|++.||.+++.+|++++.....++.+.+.. +...+..++.+ +|++||+
T Consensus 198 ------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~e~~ 250 (265)
T PRK05674 198 ------------------------WIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVS---AEGQEGL 250 (265)
T ss_pred ------------------------HHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcC---HHHHHHH
Confidence 3789999999999999999999888889888875 44567777888 9999999
Q ss_pred HHHHhccCCCCCCCC
Q 016290 325 RALTIEKDNAPKWDP 339 (392)
Q Consensus 325 ~a~l~dK~r~P~w~~ 339 (392)
++|+ +| |+|+|..
T Consensus 251 ~af~-~k-r~p~~~~ 263 (265)
T PRK05674 251 RAFL-EK-RTPAWQT 263 (265)
T ss_pred HHHH-cc-CCCCCCC
Confidence 9999 56 8999974
No 36
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.4e-53 Score=404.74 Aligned_cols=253 Identities=30% Similarity=0.447 Sum_probs=227.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~ 89 (392)
.+..|.++..++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||+|++||+|+||+.+.. ........
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~~~~~~~~ 81 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-PEDGNAAE 81 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-ccchhHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999875 11111113
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.++...+.++..|.+++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++| ..+.+
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~ 161 (257)
T COG1024 82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKE 161 (257)
T ss_pred HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHH
Confidence 67777788999999999999999999999999999999999999999999999999999998899999999999 89999
Q ss_pred HhhcCCcccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 169 LALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
|++||+.++++||+++|||+++|+. +++.+.+.++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~-------------------------------------------- 197 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALEL-------------------------------------------- 197 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHH--------------------------------------------
Confidence 9999999999999999999999985 4665543333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+++++. +|.++..+|+.++.....++++.+..|...+...+.+ +|++||+++|
T Consensus 198 -----------------------a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~d~~eg~~a~ 250 (257)
T COG1024 198 -----------------------ARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSS---EDFREGVRAF 250 (257)
T ss_pred -----------------------HHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 555555 9999999999999997777999999999999887788 9999999999
Q ss_pred HhccCCCCCC
Q 016290 328 TIEKDNAPKW 337 (392)
Q Consensus 328 l~dK~r~P~w 337 (392)
+ + |+|.|
T Consensus 251 ~-~--r~p~~ 257 (257)
T COG1024 251 L-E--RKPVF 257 (257)
T ss_pred H-c--cCCCC
Confidence 9 3 88988
No 37
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-53 Score=404.94 Aligned_cols=254 Identities=25% Similarity=0.337 Sum_probs=227.0
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~ 89 (392)
+++.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...........
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 80 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLR 80 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHH
Confidence 4567899999999999999998 599999999999999999999999999999999999999999998754211112223
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.+....+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++++|+|++| ..+.+
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~ 157 (257)
T PRK06495 81 AHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRR 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHH
Confidence 344455678888999999999999999999999999999999999999999999999996 56788999999 99999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|++||++++|+||+++||||++||++++.+.+.+
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~---------------------------------------------- 191 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAME---------------------------------------------- 191 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999998887654333
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
++++|++.||.+++.+|++++.....++.++++.|...+..++.+ +|++||+++|+
T Consensus 192 ---------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~egi~af~ 247 (257)
T PRK06495 192 ---------------------IAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKT---EDAKEAQRAFL 247 (257)
T ss_pred ---------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHHh
Confidence 378999999999999999999988889999999999999999999 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|+|+.
T Consensus 248 -~k-r~p~~~~ 256 (257)
T PRK06495 248 -EK-RPPVFKG 256 (257)
T ss_pred -cc-CCCCCCC
Confidence 56 8999975
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-53 Score=405.15 Aligned_cols=255 Identities=29% Similarity=0.387 Sum_probs=232.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~ 89 (392)
....|.++++++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .. .
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~--~ 79 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP-KP--P 79 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc-ch--H
Confidence 44568999999999999999999999999999999999999999999999999999999999999999865322 11 3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.++...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+
T Consensus 80 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 159 (259)
T PRK06688 80 DELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE 159 (259)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence 34555567888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|++||++++++||+++||||+++|++++.+.+.
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~----------------------------------------------- 192 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEAD----------------------------------------------- 192 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877665333
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+++++|++.||.+++.+|+++++....++++++..|...+..++.+ +|+++|+++|+
T Consensus 193 --------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~af~ 249 (259)
T PRK06688 193 --------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRT---PDFREGATAFI 249 (259)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 3378899999999999999999988889999999999999999999 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|+|+.
T Consensus 250 -~~-~~p~~~~ 258 (259)
T PRK06688 250 -EK-RKPDFTG 258 (259)
T ss_pred -cC-CCCCCCC
Confidence 56 8999974
No 39
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-53 Score=405.45 Aligned_cols=256 Identities=22% Similarity=0.294 Sum_probs=221.9
Q ss_pred CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290 8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD 86 (392)
Q Consensus 8 ~~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~ 86 (392)
...+..|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+|++++........
T Consensus 7 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 86 (268)
T PRK07327 7 YADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFE 86 (268)
T ss_pred CCCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHH
Confidence 44567799998 58999999999999999999999999999999999999999999999999999999998754222112
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
....++...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 12345555567888999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+++|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------- 203 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALE------------------------------------------- 203 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999998877654433
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh---cCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE---QSLAECLKKEFRLTINILRAIISADIYE 322 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~---~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (392)
++++|++.||.+++.+|++++.... ..+++.+..|. .++.+ +|++|
T Consensus 204 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~---~d~~e 252 (268)
T PRK07327 204 ------------------------VAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSG---PDVRE 252 (268)
T ss_pred ------------------------HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccC---hhHHH
Confidence 3789999999999999999996532 24555555442 35667 99999
Q ss_pred HHHHHHhccCCCCCCCC
Q 016290 323 GIRALTIEKDNAPKWDP 339 (392)
Q Consensus 323 Gv~a~l~dK~r~P~w~~ 339 (392)
|+++|+ +| |+|+|++
T Consensus 253 g~~af~-ek-r~p~~~~ 267 (268)
T PRK07327 253 GLASLR-EK-RAPDFPG 267 (268)
T ss_pred HHHHHH-hc-CCCCCCC
Confidence 999999 66 8999975
No 40
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-53 Score=407.31 Aligned_cols=260 Identities=24% Similarity=0.341 Sum_probs=223.8
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC----
Q 016290 9 PDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN---- 83 (392)
Q Consensus 9 ~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~---- 83 (392)
++++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.....
T Consensus 6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence 3445688887 78999999999999999999999999999999999999999999999999999999998743111
Q ss_pred -CchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccC-CchhHHHHhhc
Q 016290 84 -SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT-DCGFSFIHSRL 161 (392)
Q Consensus 84 -~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P-~~G~s~~L~rl 161 (392)
.......++....+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~ 165 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA 165 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence 0111122334455677889999999999999999999999999999999999999999999999997 78999999999
Q ss_pred ch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHH
Q 016290 162 PG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240 (392)
Q Consensus 162 ~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 240 (392)
+| ..+++|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------- 207 (276)
T PRK05864 166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA-------------------------------------- 207 (276)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHH--------------------------------------
Confidence 99 899999999999999999999999999998877654333
Q ss_pred HHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhc-CHHHHHHHHHHHHH-HHHHcCCcc
Q 016290 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFRLTI-NILRAIISA 318 (392)
Q Consensus 241 ~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~~~~-~~~~~~~~~ 318 (392)
.+++|+..||.+++.+|++++..... ++.+.+..|..... ..+.+ +
T Consensus 208 -----------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~---~ 255 (276)
T PRK05864 208 -----------------------------IAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLT---A 255 (276)
T ss_pred -----------------------------HHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccC---h
Confidence 37899999999999999999987664 78988888865332 34567 9
Q ss_pred HHHHHHHHHHhccCCCCCCCCC
Q 016290 319 DIYEGIRALTIEKDNAPKWDPP 340 (392)
Q Consensus 319 d~~eGv~a~l~dK~r~P~w~~~ 340 (392)
|++||+++|+ +| |+|+|.+.
T Consensus 256 d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 256 NFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred hHHHHHHHHh-cc-CCCCCCCC
Confidence 9999999999 66 89999864
No 41
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-53 Score=407.16 Aligned_cols=259 Identities=25% Similarity=0.345 Sum_probs=228.1
Q ss_pred CCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch-
Q 016290 9 PDEQVVLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD- 86 (392)
Q Consensus 9 ~~~~~V~~~~~~-~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~- 86 (392)
+.++.|.+++++ +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06210 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR 81 (272)
T ss_pred CCcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence 456779999998 999999999999999999999999999999999999999999999999999999998754211100
Q ss_pred ---hHHHHH----HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHh
Q 016290 87 ---SCLEVV----YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHS 159 (392)
Q Consensus 87 ---~~~~~~----~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~ 159 (392)
....+. ....+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (272)
T PRK06210 82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILP 161 (272)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence 001111 1224456789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHH
Q 016290 160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI 238 (392)
Q Consensus 160 rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 238 (392)
|++| ..+++|+|||++++|+||+++||||++||++++.+.+.
T Consensus 162 ~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------- 204 (272)
T PRK06210 162 RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL------------------------------------- 204 (272)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------
Confidence 9999 89999999999999999999999999999877654333
Q ss_pred HHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhc-CchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCc
Q 016290 239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS 317 (392)
Q Consensus 239 i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~ 317 (392)
+.+++|++. ||.++..+|+++++....++.+.++.|...+..++.+
T Consensus 205 ------------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~--- 251 (272)
T PRK06210 205 ------------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQR--- 251 (272)
T ss_pred ------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcC---
Confidence 336788875 9999999999999988889999999999999999999
Q ss_pred cHHHHHHHHHHhccCCCCCCCC
Q 016290 318 ADIYEGIRALTIEKDNAPKWDP 339 (392)
Q Consensus 318 ~d~~eGv~a~l~dK~r~P~w~~ 339 (392)
+|++||+++|+ +| |+|.|..
T Consensus 252 ~~~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 252 PDFIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred ccHHHHHHHHh-cc-CCCCCCC
Confidence 99999999999 66 8999974
No 42
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.1e-53 Score=403.73 Aligned_cols=254 Identities=21% Similarity=0.280 Sum_probs=219.9
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHH
Q 016290 12 QVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL 89 (392)
Q Consensus 12 ~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~ 89 (392)
..|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 3578888 899999999999999999999999999999999999999999999999 89999999998643111111101
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.. .....+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .++++
T Consensus 82 ~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HR-LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HH-HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 11 12345777899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|++||++++|+||+++||||++||++++.+.+.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 193 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETV----------------------------------------------- 193 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877765333
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+++++|++.||.+++.+|++++.... .....+..|...+..++.+ +|++||+++|+
T Consensus 194 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~af~ 249 (259)
T TIGR01929 194 --------------------RWCREILQKSPMAIRMLKAALNADCD-GQAGLQELAGNATMLFYMT---EEGQEGRNAFL 249 (259)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHhcC---ccHHHHHHHHh
Confidence 33789999999999999999997644 3455566677788888888 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|+|+.
T Consensus 250 -~k-r~p~~~~ 258 (259)
T TIGR01929 250 -EK-RQPDFSK 258 (259)
T ss_pred -cc-CCCCCCC
Confidence 66 8999974
No 43
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=6.4e-54 Score=393.90 Aligned_cols=250 Identities=28% Similarity=0.380 Sum_probs=224.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
++...+++|+.||||||+++|||+..|+.+|.+++..+++|+.+.++||||.|++||+|+|++++......+.. ...|
T Consensus 39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~-~~~~- 116 (290)
T KOG1680|consen 39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVS-DGIF- 116 (290)
T ss_pred EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccc-cccc-
Confidence 45566889999999999999999999999999999999999999999999999999999999998763221111 2222
Q ss_pred HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (392)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt 172 (392)
.+....+.+.+||+||++||+|+|||++|++.||+|||+++++|++|+.++|++|.+|||.+|+|.+| .+|+++++|
T Consensus 117 --~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~lt 194 (290)
T KOG1680|consen 117 --LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILT 194 (290)
T ss_pred --cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHh
Confidence 12333445899999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290 173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII 252 (392)
Q Consensus 173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~ 252 (392)
|++++++||.++|||++|||++++...+.
T Consensus 195 g~~~~AqeA~~~GlVn~Vvp~~~~l~eAv--------------------------------------------------- 223 (290)
T KOG1680|consen 195 GRRLGAQEAKKIGLVNKVVPSGDALGEAV--------------------------------------------------- 223 (290)
T ss_pred cCcccHHHHHhCCceeEeecchhHHHHHH---------------------------------------------------
Confidence 99999999999999999999998654333
Q ss_pred HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccC
Q 016290 253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD 332 (392)
Q Consensus 253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~ 332 (392)
+++++|++.||..++..|+.++.+.+.++.+++..|..++...+.. +|.+|||.+|. +|
T Consensus 224 ----------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~---~d~~Eg~~~f~-~k- 282 (290)
T KOG1680|consen 224 ----------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFAT---EDRLEGMTAFA-EK- 282 (290)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhh---HHHHHHHHHhc-cc-
Confidence 3478999999999999999999999999999999999999999999 99999999997 66
Q ss_pred CCCCCCC
Q 016290 333 NAPKWDP 339 (392)
Q Consensus 333 r~P~w~~ 339 (392)
|+|+|+.
T Consensus 283 r~~~~~k 289 (290)
T KOG1680|consen 283 RKPKFSK 289 (290)
T ss_pred CCccccc
Confidence 9999974
No 44
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=4.1e-53 Score=402.24 Aligned_cols=251 Identities=26% Similarity=0.408 Sum_probs=223.5
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHHH
Q 016290 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++...... . ..+
T Consensus 4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~-~--~~~ 79 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAP-D--ADF 79 (261)
T ss_pred eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcc-h--hhh
Confidence 5889999999999999996 5999999999999999999999999999999999 899999999987642211 1 122
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
....+.++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 80 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~ 159 (261)
T PRK03580 80 GPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMV 159 (261)
T ss_pred hhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHH
Confidence 222345667889999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
+||++++|+||+++|||+++||++++.+.+.++
T Consensus 160 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~----------------------------------------------- 192 (261)
T PRK03580 160 MTGRRMDAEEALRWGIVNRVVPQAELMDRAREL----------------------------------------------- 192 (261)
T ss_pred HhCCccCHHHHHHcCCCcEecCHhHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999988877644433
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHH----HHHHHHHcCCccHHHHHHHH
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR----LTINILRAIISADIYEGIRA 326 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~----~~~~~~~~~~~~d~~eGv~a 326 (392)
+++|++.+|.+++.+|++++.....++.++++.|.. .+..++.+ +|++||+++
T Consensus 193 --------------------a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~d~~e~~~a 249 (261)
T PRK03580 193 --------------------AQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHS---EDALEGPRA 249 (261)
T ss_pred --------------------HHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcC---ccHHHHHHH
Confidence 788999999999999999998888899999998864 66778888 999999999
Q ss_pred HHhccCCCCCCCC
Q 016290 327 LTIEKDNAPKWDP 339 (392)
Q Consensus 327 ~l~dK~r~P~w~~ 339 (392)
|+ +| |+|+|+.
T Consensus 250 f~-ek-r~~~~~~ 260 (261)
T PRK03580 250 FA-EK-RDPVWKG 260 (261)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 66 8999975
No 45
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-53 Score=402.60 Aligned_cols=256 Identities=24% Similarity=0.321 Sum_probs=224.7
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCc
Q 016290 7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSK 85 (392)
Q Consensus 7 ~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~ 85 (392)
++...+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+| ++||+|+|++++..... .
T Consensus 3 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~-~ 81 (262)
T PRK06144 3 MTTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFST-A 81 (262)
T ss_pred cccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccc-h
Confidence 455667899999999999999999999999999999999999999999999999999999 89999999998754221 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccc-cCccCCchhHHHHhhcch-
Q 016290 86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS-IGFHTDCGFSFIHSRLPG- 163 (392)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~-iGl~P~~G~s~~L~rl~G- 163 (392)
.....+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~ 161 (262)
T PRK06144 82 EDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA 161 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH
Confidence 111334444567788899999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290 164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243 (392)
Q Consensus 164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f 243 (392)
..+++|++||++++|+||+++||||++||++++.+.+.
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------ 199 (262)
T PRK06144 162 ARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD------------------------------------------ 199 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999999887765433
Q ss_pred CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290 244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG 323 (392)
Q Consensus 244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (392)
+++++|++.||.+++.+|+.++......+ ..+.+.+..++.+ +|++||
T Consensus 200 -------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~---~~~~e~ 247 (262)
T PRK06144 200 -------------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYMS---EDFREG 247 (262)
T ss_pred -------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhcC---hHHHHH
Confidence 33789999999999999999998755544 4445677778888 999999
Q ss_pred HHHHHhccCCCCCCCC
Q 016290 324 IRALTIEKDNAPKWDP 339 (392)
Q Consensus 324 v~a~l~dK~r~P~w~~ 339 (392)
+++|+ +| |+|+|.+
T Consensus 248 ~~af~-~k-r~p~~~~ 261 (262)
T PRK06144 248 VEAFL-EK-RPPKWKG 261 (262)
T ss_pred HHHHh-cC-CCCCCCC
Confidence 99999 66 8999975
No 46
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=3.2e-53 Score=401.81 Aligned_cols=251 Identities=22% Similarity=0.310 Sum_probs=216.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLE 90 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~ 90 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++..... .. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~--~~ 78 (256)
T TIGR03210 2 EDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GR--GT 78 (256)
T ss_pred CceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-ch--hH
Confidence 4688999999999999999999999999999999999999999999999999999 89999999998743211 11 11
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (392)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L 169 (392)
+......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++| ..+++|
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~l 158 (256)
T TIGR03210 79 IGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREI 158 (256)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHH
Confidence 2223456788899999999999999999999999999999999999999999999999988888999999999 999999
Q ss_pred hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (392)
Q Consensus 170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e 249 (392)
++||++++|+||+++||||++||++++.+.+.+
T Consensus 159 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~----------------------------------------------- 191 (256)
T TIGR03210 159 WYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQK----------------------------------------------- 191 (256)
T ss_pred HHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999998877654433
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCH-HHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSL-AECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l-~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
++++|++.||.+++.+|++++....... .+. .|...+..++.+ +|++||+++|+
T Consensus 192 --------------------~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~~---~d~~e~~~af~ 246 (256)
T TIGR03210 192 --------------------WCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYDT---AESREGVKAFQ 246 (256)
T ss_pred --------------------HHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHccC---hhHHHHHHHHh
Confidence 3789999999999999999997654321 112 244566677788 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|+|++
T Consensus 247 -~k-r~p~~~~ 255 (256)
T TIGR03210 247 -EK-RKPEFRK 255 (256)
T ss_pred -cc-CCCCCCC
Confidence 66 8999974
No 47
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-53 Score=400.33 Aligned_cols=249 Identities=21% Similarity=0.326 Sum_probs=224.2
Q ss_pred CCCCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCch
Q 016290 9 PDEQVVLGE-EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKD 86 (392)
Q Consensus 9 ~~~~~V~~~-~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~ 86 (392)
+....+.++ .+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++.... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~ 80 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLD--QA 80 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcC--hh
Confidence 344567777 4689999999999999999999999999999999999999999999999 8999999999875421 12
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
....++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |++|++++|+|++| ..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 22445556677888999999999999999999999999999999999999999999999998 88899999999999 89
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+.+|++||++++|+||+++||||++||++++.+.+.++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~------------------------------------------ 197 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERL------------------------------------------ 197 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHH------------------------------------------
Confidence 99999999999999999999999999988776544433
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (392)
+++|+..||.+++.+|++++.....++.+.+..|...+..++.+ +|++||++
T Consensus 198 -------------------------a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~e~~~ 249 (256)
T PRK06143 198 -------------------------AASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLT---GEPQRHMA 249 (256)
T ss_pred -------------------------HHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcC---hHHHHHHH
Confidence 78999999999999999999988889999999999999999999 99999999
Q ss_pred HHHhcc
Q 016290 326 ALTIEK 331 (392)
Q Consensus 326 a~l~dK 331 (392)
+|+ +|
T Consensus 250 af~-ek 254 (256)
T PRK06143 250 AFL-NR 254 (256)
T ss_pred HHH-hh
Confidence 999 56
No 48
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-53 Score=397.19 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=221.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.... ...+..
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-----~~~~~~ 76 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF-----AIDLRE 76 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh-----HHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999875311 123334
Q ss_pred HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcC
Q 016290 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG 173 (392)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG 173 (392)
..+.++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++++|||
T Consensus 77 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g 156 (248)
T PRK06072 77 TFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLG 156 (248)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhC
Confidence 45667888999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHH
Q 016290 174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK 253 (392)
Q Consensus 174 ~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~ 253 (392)
++++|+||+++|||+.+ +++.+.
T Consensus 157 ~~~~a~eA~~~Glv~~~---~~~~~~------------------------------------------------------ 179 (248)
T PRK06072 157 GEFTAEEAERWGLLKIS---EDPLSD------------------------------------------------------ 179 (248)
T ss_pred CccCHHHHHHCCCcccc---chHHHH------------------------------------------------------
Confidence 99999999999999953 233221
Q ss_pred HHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCC
Q 016290 254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDN 333 (392)
Q Consensus 254 ~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r 333 (392)
|.+++++|++.||.+++.+|++++.....++++.++.|...+..++.+ +|++||+++|+ +| |
T Consensus 180 -------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k-r 241 (248)
T PRK06072 180 -------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKT---EDFKEGISSFK-EK-R 241 (248)
T ss_pred -------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCC---hhHHHHHHHHh-cC-C
Confidence 224478999999999999999999988889999999999999999999 99999999999 66 8
Q ss_pred CCCCCC
Q 016290 334 APKWDP 339 (392)
Q Consensus 334 ~P~w~~ 339 (392)
+|+|++
T Consensus 242 ~p~~~~ 247 (248)
T PRK06072 242 EPKFKG 247 (248)
T ss_pred CCCCCC
Confidence 999985
No 49
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-53 Score=407.39 Aligned_cols=257 Identities=21% Similarity=0.286 Sum_probs=221.2
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC--C-----
Q 016290 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR--N----- 83 (392)
Q Consensus 11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~--~----- 83 (392)
+..|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++.... .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999874210 0
Q ss_pred -------Cch-hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhH
Q 016290 84 -------SKD-SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS 155 (392)
Q Consensus 84 -------~~~-~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s 155 (392)
... ....+......+...|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 000 011222333457788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHH
Q 016290 156 FIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLN 234 (392)
Q Consensus 156 ~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 234 (392)
++|+|++| .++++|+|||++++|+||+++||||++||++++.+.+.
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------- 209 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR--------------------------------- 209 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH---------------------------------
Confidence 99999999 99999999999999999999999999999877654333
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhc-CchHHHHHHHHHHHhhh--cCHHHHHHHHHHHHHHH
Q 016290 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGRE--QSLAECLKKEFRLTINI 311 (392)
Q Consensus 235 ~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~--~~l~~~l~~E~~~~~~~ 311 (392)
+++++|+++ +|.+++.+|++++.... ..+.. ...|...+..+
T Consensus 210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~-~~~e~~~~~~~ 254 (296)
T PRK08260 210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPMEA-HRVDSRAIYSR 254 (296)
T ss_pred ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHH-HHHHHHHHHHH
Confidence 337888885 99999999999998743 23443 35677788888
Q ss_pred HHcCCccHHHHHHHHHHhccCCCCCCCCC
Q 016290 312 LRAIISADIYEGIRALTIEKDNAPKWDPP 340 (392)
Q Consensus 312 ~~~~~~~d~~eGv~a~l~dK~r~P~w~~~ 340 (392)
+.+ +|++||+++|+ +| |+|.|+++
T Consensus 255 ~~~---~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 255 GRS---GDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred ccC---hhHHHHHHHHh-cC-CCCCCCCC
Confidence 888 99999999999 66 89999875
No 50
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.6e-53 Score=398.48 Aligned_cols=249 Identities=24% Similarity=0.352 Sum_probs=224.9
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC-c-hhHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-K-DSCL 89 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~-~-~~~~ 89 (392)
.+|.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++...... . ....
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK07260 2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV 81 (255)
T ss_pred CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999988642111 1 1112
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
.+....++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (255)
T PRK07260 82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH 161 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence 33344567788999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|+|||++++|+||+++||||++||++++.+.+.++
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------- 196 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQL--------------------------------------------- 196 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999988776544433
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+++|++.+|.+++.+|+.++.....++++.+..|...+..++.+ +|++||+++|+
T Consensus 197 ----------------------a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~ 251 (255)
T PRK07260 197 ----------------------LKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFK---EDFKEGVRAFS 251 (255)
T ss_pred ----------------------HHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 78999999999999999999988889999999999999999999 99999999999
Q ss_pred hcc
Q 016290 329 IEK 331 (392)
Q Consensus 329 ~dK 331 (392)
+|
T Consensus 252 -~k 253 (255)
T PRK07260 252 -ER 253 (255)
T ss_pred -hc
Confidence 55
No 51
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-52 Score=397.93 Aligned_cols=256 Identities=23% Similarity=0.300 Sum_probs=228.4
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC-CCchh
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDS 87 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~-~~~~~ 87 (392)
+....|.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... .....
T Consensus 3 ~~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (260)
T PRK07827 3 PVDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDA 82 (260)
T ss_pred CCCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999875421 11111
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHH
Q 016290 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGE 167 (392)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~ 167 (392)
...++....++++.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++|..++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~ 162 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA 162 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence 13455666778899999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++++||+++|||+++++ ++.+.+.
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~---------------------------------------------- 194 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVA---------------------------------------------- 194 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHH----------------------------------------------
Confidence 9999999999999999999999874 3443222
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+++++|++.||.+++.+|+++++....++.+.++.|...+..++.+ +|+++|+++|
T Consensus 195 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~af 250 (260)
T PRK07827 195 ---------------------ALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVS---DEAREGMTAF 250 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 3478999999999999999999988889999999999999999999 9999999999
Q ss_pred HhccCCCCCCC
Q 016290 328 TIEKDNAPKWD 338 (392)
Q Consensus 328 l~dK~r~P~w~ 338 (392)
+ +| |+|+|+
T Consensus 251 ~-~k-r~p~~~ 259 (260)
T PRK07827 251 L-QK-RPPRWA 259 (260)
T ss_pred h-cC-CCCCCC
Confidence 9 66 789995
No 52
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=9.9e-53 Score=399.47 Aligned_cols=255 Identities=19% Similarity=0.322 Sum_probs=226.3
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-C-CccccCCCchhhccCCCCch
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV-G-RAFSAGGDLKMFYDGRNSKD 86 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~-G-~~FcaG~Dl~~l~~~~~~~~ 86 (392)
|+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.+++|+ +++|||+|. | ++||+|+|++++..... +
T Consensus 1 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~- 77 (261)
T PRK11423 1 MSMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D- 77 (261)
T ss_pred CCccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c-
Confidence 35668999999999999999999999999999999999999999988 999999996 3 89999999998754211 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
...+.....+++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++| .+
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 1233444567888999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+.+|++||++++|+||+++||||++||++++.+.+.
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~-------------------------------------------- 192 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL-------------------------------------------- 192 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887765433
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCH-HHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSL-AECLKKEFRLTINILRAIISADIYEG 323 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l-~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (392)
+++++|++.||.+++.+|++++.... ..+ .+.++.|......++.+ +|++||
T Consensus 193 -----------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~eg 246 (261)
T PRK11423 193 -----------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDS---EDYQEG 246 (261)
T ss_pred -----------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCC---hhHHHH
Confidence 34789999999999999999997643 344 68888898998999999 999999
Q ss_pred HHHHHhccCCCCCCCC
Q 016290 324 IRALTIEKDNAPKWDP 339 (392)
Q Consensus 324 v~a~l~dK~r~P~w~~ 339 (392)
+.+|+ +| |+|+|++
T Consensus 247 ~~af~-~k-r~p~~~~ 260 (261)
T PRK11423 247 MNAFL-EK-RKPVFVG 260 (261)
T ss_pred HHHHh-cc-CCCCCCC
Confidence 99999 66 8999975
No 53
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-52 Score=398.13 Aligned_cols=254 Identities=20% Similarity=0.241 Sum_probs=223.7
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCc-hhHH
Q 016290 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK-DSCL 89 (392)
Q Consensus 11 ~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~-~~~~ 89 (392)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ....
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK07509 2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLF 81 (262)
T ss_pred CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHh
Confidence 456889999999999999999999999999999999999999999999999999999999999999876421111 1111
Q ss_pred H----HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290 90 E----VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H 164 (392)
Q Consensus 90 ~----~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~ 164 (392)
. ......++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 161 (262)
T PRK07509 82 KRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKD 161 (262)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHH
Confidence 1 1122344666788999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (392)
Q Consensus 165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~ 244 (392)
.+++|+|||++++|+||+++||||++|+. +.+.
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~--------------------------------------------- 194 (262)
T PRK07509 162 VARELTYTARVFSAEEALELGLVTHVSDD--PLAA--------------------------------------------- 194 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHH---------------------------------------------
Confidence 99999999999999999999999999953 3222
Q ss_pred cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (392)
Q Consensus 245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (392)
+.+++++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+
T Consensus 195 ----------------------a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~ 249 (262)
T PRK07509 195 ----------------------ALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLG---KNQKIAV 249 (262)
T ss_pred ----------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHH
Confidence 224478999999999999999999988889999999999999999999 9999999
Q ss_pred HHHHhccCCCCCCC
Q 016290 325 RALTIEKDNAPKWD 338 (392)
Q Consensus 325 ~a~l~dK~r~P~w~ 338 (392)
++|+ +| |+|.|.
T Consensus 250 ~af~-ek-r~p~~~ 261 (262)
T PRK07509 250 KAQM-KK-RAPKFL 261 (262)
T ss_pred HHHh-cC-CCCCCC
Confidence 9999 66 889996
No 54
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.6e-52 Score=400.59 Aligned_cols=256 Identities=21% Similarity=0.307 Sum_probs=222.5
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
++..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++..........
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 90 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDG 90 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhh
Confidence 456799999999999999999999999999999999999999999999999999999 7999999999874311101110
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
...+ ....++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus 91 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~ 169 (273)
T PRK07396 91 VPRL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAR 169 (273)
T ss_pred hhhh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHH
Confidence 1111 1245677889999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++|+||+++||||++||++++.+.+.+
T Consensus 170 ~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------- 204 (273)
T PRK07396 170 EIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVR--------------------------------------------- 204 (273)
T ss_pred HHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998877654433
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
++++|++.||.+++.+|++++.... .++.....|...+..++.+ +|++||+++|
T Consensus 205 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~af 258 (273)
T PRK07396 205 ----------------------WCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMT---EEAQEGRNAF 258 (273)
T ss_pred ----------------------HHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 3789999999999999999997644 4565566788888888888 9999999999
Q ss_pred HhccCCCCCCCC
Q 016290 328 TIEKDNAPKWDP 339 (392)
Q Consensus 328 l~dK~r~P~w~~ 339 (392)
+ +| |+|+|..
T Consensus 259 ~-~k-r~p~~~~ 268 (273)
T PRK07396 259 N-EK-RQPDFSK 268 (273)
T ss_pred h-CC-CCCCCCC
Confidence 9 66 8999975
No 55
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3e-52 Score=396.86 Aligned_cols=254 Identities=19% Similarity=0.290 Sum_probs=223.6
Q ss_pred CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCch
Q 016290 8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD 86 (392)
Q Consensus 8 ~~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~ 86 (392)
+.+.+.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++.......
T Consensus 5 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~- 83 (265)
T PLN02888 5 TVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD- 83 (265)
T ss_pred cCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch-
Confidence 45667788886 7899999999999999999999999999999999999999999999999999999999864311111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
... ...+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..
T Consensus 84 -~~~---~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 159 (265)
T PLN02888 84 -VKD---VETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159 (265)
T ss_pred -hhH---HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence 111 1245667789999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+++|+|||++++|+||+++||||++||++++.+.+.
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 195 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAR-------------------------------------------- 195 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887765433
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH--HcCCccHHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL--RAIISADIYEG 323 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~--~~~~~~d~~eG 323 (392)
+++++|++.+|.+++.+|++++.....++++++..|......++ .+ +|++||
T Consensus 196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~e~ 249 (265)
T PLN02888 196 -----------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMT---KEQFQK 249 (265)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC---HHHHHH
Confidence 33789999999999999999999888899999999988777775 36 999999
Q ss_pred HHHHHhccCCCCCCC
Q 016290 324 IRALTIEKDNAPKWD 338 (392)
Q Consensus 324 v~a~l~dK~r~P~w~ 338 (392)
+++|+ +| |+|+=.
T Consensus 250 ~~af~-ek-r~~~~~ 262 (265)
T PLN02888 250 MQEFI-AG-RSSKKP 262 (265)
T ss_pred HHHHH-hc-CCCCCC
Confidence 99999 66 667643
No 56
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3.1e-52 Score=393.81 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=216.4
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.. . ....++.
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~----~-~~~~~~~ 76 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP----D-QCAAMLA 76 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc----h-hHHHHHH
Confidence 788899999999999997 599999999999999999999999999999999999999999997532 1 1133445
Q ss_pred HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (392)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt 172 (392)
...+++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ |++++|+|++| ..+++|+||
T Consensus 77 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 77 SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 5567888999999999999999999999999999999999999999999999999997 56789999999 899999999
Q ss_pred CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290 173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII 252 (392)
Q Consensus 173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~ 252 (392)
|++++|+||+++||||+++|+.+ + ..+
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~--~a~------------------------------------------------- 182 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--N--AAL------------------------------------------------- 182 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--H--HHH-------------------------------------------------
Confidence 99999999999999999997532 1 111
Q ss_pred HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLK-KEFRLTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~-~E~~~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
..++++|+++||.+++.+|++++.....++++.+. .|......++.+ +|++||+++|+ +|
T Consensus 183 ---------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~-ek 243 (251)
T TIGR03189 183 ---------------AWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMAT---HDAVEGLNAFL-EK 243 (251)
T ss_pred ---------------HHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCC---HhHHHHHHHHH-hc
Confidence 01157899999999999999999888888888774 787888888888 99999999999 66
Q ss_pred CCCCCCCC
Q 016290 332 DNAPKWDP 339 (392)
Q Consensus 332 ~r~P~w~~ 339 (392)
|+|.|++
T Consensus 244 -r~p~~~~ 250 (251)
T TIGR03189 244 -RPALWED 250 (251)
T ss_pred -CCCCCCC
Confidence 8999975
No 57
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-52 Score=394.83 Aligned_cols=243 Identities=20% Similarity=0.281 Sum_probs=220.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--~~~~ 80 (249)
T PRK05870 3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP--AEDG 80 (249)
T ss_pred ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc--hHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999986532211 1334
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
+...++++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus 81 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 160 (249)
T PRK05870 81 LRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL 160 (249)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHH
Confidence 555567778899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
+||++++|+||+++||||++| +++.+.+.
T Consensus 161 ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~------------------------------------------------- 189 (249)
T PRK05870 161 LFGMRFDAEAAVRHGLALMVA--DDPVAAAL------------------------------------------------- 189 (249)
T ss_pred HhCCccCHHHHHHcCCHHHHH--hhHHHHHH-------------------------------------------------
Confidence 999999999999999999999 45544333
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+++++|++.||.+++.+|++++.... .++++++..|...+..++.+ +|++||+++|+
T Consensus 190 ------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~ 247 (249)
T PRK05870 190 ------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQS---PEFAARLAAAQ 247 (249)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh
Confidence 33789999999999999999999887 89999999999999999999 99999999998
No 58
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-52 Score=394.40 Aligned_cols=248 Identities=26% Similarity=0.285 Sum_probs=216.3
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .. ....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~-~~~~ 80 (254)
T PRK08259 3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NR-LHPS 80 (254)
T ss_pred ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hh-hhhh
Confidence 348899999999999999999999999999999999999999999999999999999999999998754211 11 1110
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
....+...+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 81 --~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll 158 (254)
T PRK08259 81 --GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLI 158 (254)
T ss_pred --hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 0011122334799999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
+||++++|+||+++||||++||++++.+.+.+
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------ 190 (254)
T PRK08259 159 LTGRPVDADEALAIGLANRVVPKGQARAAAEE------------------------------------------------ 190 (254)
T ss_pred HcCCccCHHHHHHcCCCCEeeChhHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887654433
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d 330 (392)
++++|++.||.+++.+|++++.....++++++..|...+...+ + +|++||+++|+ +
T Consensus 191 -------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~-~---~d~~egi~af~-~ 246 (254)
T PRK08259 191 -------------------LAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL-A---AEALEGAARFA-A 246 (254)
T ss_pred -------------------HHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-h---hHHHHHHHHHH-h
Confidence 3789999999999999999998878899999999988766655 4 89999999999 6
Q ss_pred cCCCC
Q 016290 331 KDNAP 335 (392)
Q Consensus 331 K~r~P 335 (392)
|+++|
T Consensus 247 ~~~~~ 251 (254)
T PRK08259 247 GAGRH 251 (254)
T ss_pred hhccc
Confidence 76766
No 59
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-52 Score=401.97 Aligned_cols=257 Identities=24% Similarity=0.289 Sum_probs=218.8
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccC----C--
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG----R-- 82 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~----~-- 82 (392)
++++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||||.|++||+|+||++.... .
T Consensus 2 ~~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 2 PDFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred CCceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence 4466799999999999999999999999999999999999999999999999999999999999999863210 0
Q ss_pred CCc-hhHHHH---HHHH---HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeecccccc-CccCCchh
Q 016290 83 NSK-DSCLEV---VYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASI-GFHTDCGF 154 (392)
Q Consensus 83 ~~~-~~~~~~---~~~~---~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~i-Gl~P~~G~ 154 (392)
... .....+ .... ..++..|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++ |++| |+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~ 159 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TG 159 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hh
Confidence 000 101111 1111 235567899999999999999999999999999999999999999999997 9875 34
Q ss_pred HHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHH
Q 016290 155 SFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL 233 (392)
Q Consensus 155 s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (392)
++ + +++| .++++|++||++++|+||+++||||++||++++.+.+.++
T Consensus 160 ~~-~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~------------------------------ 207 (298)
T PRK12478 160 MW-L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEV------------------------------ 207 (298)
T ss_pred HH-H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHH------------------------------
Confidence 44 3 4578 9999999999999999999999999999998887644444
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHH
Q 016290 234 NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINIL 312 (392)
Q Consensus 234 ~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~ 312 (392)
+++|+.+||.+++.+|++++.... .++.+++..|...+..++
T Consensus 208 -------------------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~ 250 (298)
T PRK12478 208 -------------------------------------ATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMR 250 (298)
T ss_pred -------------------------------------HHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 789999999999999999998866 569999999999999999
Q ss_pred HcCCccHHH--------HHHHHHHhccCCCCCCCCCC
Q 016290 313 RAIISADIY--------EGIRALTIEKDNAPKWDPPT 341 (392)
Q Consensus 313 ~~~~~~d~~--------eGv~a~l~dK~r~P~w~~~~ 341 (392)
.+ +|++ ||++||+ +| |+|+|...+
T Consensus 251 ~s---~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~ 282 (298)
T PRK12478 251 NT---PDALEFIRTAETQGVRAAV-ER-RDGPFGDYS 282 (298)
T ss_pred cC---hhHHHHHHHHHHHHHHHHH-Hh-cCCcccccC
Confidence 99 9997 5999999 66 899998654
No 60
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.7e-52 Score=391.02 Aligned_cols=243 Identities=21% Similarity=0.314 Sum_probs=218.2
Q ss_pred CcEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290 12 QVVLGEEIGN---VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 12 ~~V~~~~~~~---v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
+.|.++++++ |++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.......
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~--- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGG--- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccc---
Confidence 3588888874 9999999999999999999999999999999999999999999999999999999876421111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
..+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~ 159 (251)
T PRK06023 80 TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAF 159 (251)
T ss_pred hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHH
Confidence 223334456788899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
++++||++++++||+++|||+++||.+++.+.+.+
T Consensus 160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------------- 194 (251)
T PRK06023 160 ALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLK--------------------------------------------- 194 (251)
T ss_pred HHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998877654333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
++++|++.||.+++.+|++++... .++.+.+..|...+..++.+ +|++||+++|
T Consensus 195 ----------------------~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~---~~~~e~~~af 248 (251)
T PRK06023 195 ----------------------AAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKS---AEARAAFEAF 248 (251)
T ss_pred ----------------------HHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence 378999999999999999999764 47899999999988999999 9999999999
Q ss_pred H
Q 016290 328 T 328 (392)
Q Consensus 328 l 328 (392)
+
T Consensus 249 ~ 249 (251)
T PRK06023 249 M 249 (251)
T ss_pred h
Confidence 8
No 61
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=388.05 Aligned_cols=240 Identities=22% Similarity=0.264 Sum_probs=216.0
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
|.++++++|++||||||+++|+||.+|+.+|.++++.+++| ++++|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~-------~~~~~~ 73 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY-------ADDFPD 73 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh-------HHHHHH
Confidence 56788999999999999999999999999999999999865 8999999999999999999985211 123444
Q ss_pred HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (392)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt 172 (392)
..+++++.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+||
T Consensus 74 ~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~lt 153 (243)
T PRK07854 74 ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLG 153 (243)
T ss_pred HHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHc
Confidence 5567888999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHH
Q 016290 173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII 252 (392)
Q Consensus 173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~ 252 (392)
|++++|+||+++|||+++++ +. .+.
T Consensus 154 g~~~~a~eA~~~Glv~~v~~---~~-~a~--------------------------------------------------- 178 (243)
T PRK07854 154 AEKLTAEQALATGMANRIGT---LA-DAQ--------------------------------------------------- 178 (243)
T ss_pred CCCcCHHHHHHCCCcccccC---HH-HHH---------------------------------------------------
Confidence 99999999999999999964 22 111
Q ss_pred HHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccC
Q 016290 253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD 332 (392)
Q Consensus 253 ~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~ 332 (392)
+++++|++.||.+++.+|+++++. .++++.+..|......++.+ +|++||+++|+ +|
T Consensus 179 ----------------~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k- 235 (243)
T PRK07854 179 ----------------AWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWAS---QDAIEAQVARI-EK- 235 (243)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-CC-
Confidence 337889999999999999999976 67999999999999999999 99999999999 66
Q ss_pred CCCCCCC
Q 016290 333 NAPKWDP 339 (392)
Q Consensus 333 r~P~w~~ 339 (392)
|+|.|++
T Consensus 236 r~p~~~~ 242 (243)
T PRK07854 236 RPPKFQG 242 (243)
T ss_pred CCCCCCC
Confidence 8999975
No 62
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.7e-51 Score=401.06 Aligned_cols=255 Identities=20% Similarity=0.286 Sum_probs=219.3
Q ss_pred CCCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCC-c
Q 016290 10 DEQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS-K 85 (392)
Q Consensus 10 ~~~~V~~~~--~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~-~ 85 (392)
+++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++...... .
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~ 142 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGP 142 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccch
Confidence 466789988 589999999999999999999999999999999999999999999999 899999999987432111 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H
Q 016290 86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H 164 (392)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~ 164 (392)
.....+ ....+...|.+++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus 143 ~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~ 220 (327)
T PLN02921 143 DDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK 220 (327)
T ss_pred hHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 111111 1245677899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhC
Q 016290 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (392)
Q Consensus 165 ~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~ 244 (392)
.+++|++||++++|+||+++||||++||.+++.+.+.++
T Consensus 221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~----------------------------------------- 259 (327)
T PLN02921 221 KAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKW----------------------------------------- 259 (327)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHH-----------------------------------------
Confidence 999999999999999999999999999988776544433
Q ss_pred cCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q 016290 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (392)
Q Consensus 245 ~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (392)
+++|+++||.+++.+|++++..... .......|...+..++.+ +|++||+
T Consensus 260 --------------------------a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s---~d~~egi 309 (327)
T PLN02921 260 --------------------------CREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGS---EEGNEGR 309 (327)
T ss_pred --------------------------HHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcC---HHHHHHH
Confidence 7899999999999999999987543 333334445677777888 9999999
Q ss_pred HHHHhccCCCCCCCC
Q 016290 325 RALTIEKDNAPKWDP 339 (392)
Q Consensus 325 ~a~l~dK~r~P~w~~ 339 (392)
++|+ +| |+|.|+.
T Consensus 310 ~Af~-ek-r~p~f~~ 322 (327)
T PLN02921 310 TAYL-EG-RAPDFSK 322 (327)
T ss_pred HHHh-cc-CCCCCCC
Confidence 9999 66 8999974
No 63
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-51 Score=388.39 Aligned_cols=242 Identities=21% Similarity=0.261 Sum_probs=214.5
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 17 EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 17 ~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
+++++|++||||||++ |+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ......+.+...
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~ 84 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPG-FTALIDANRGCF 84 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccc-hhHHHHHHHHHH
Confidence 4578999999999985 99999999999999999999999999999999999999999998754211 111123334445
Q ss_pred HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCc
Q 016290 97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGAR 175 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~ 175 (392)
+++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|+|++| ..+++|++||++
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~ 161 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAAT 161 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCc
Confidence 67788999999999999999999999999999999999999999999999985 66788999999 899999999999
Q ss_pred ccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHH
Q 016290 176 LNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSF 255 (392)
Q Consensus 176 l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l 255 (392)
++|+||+++|||+++||++++.+.+.+
T Consensus 162 ~~a~eA~~~Glv~~vv~~~~l~~~a~~----------------------------------------------------- 188 (249)
T PRK07938 162 ITAAELHHFGSVEEVVPRDQLDEAALE----------------------------------------------------- 188 (249)
T ss_pred CCHHHHHHCCCccEEeCHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999998877654443
Q ss_pred HHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhccCCCC
Q 016290 256 EAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAP 335 (392)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK~r~P 335 (392)
++++|++.||.+++.+|++++.....++++.+..|......++.+ +|++||+++|+ +| |+|
T Consensus 189 --------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~-ek-r~p 249 (249)
T PRK07938 189 --------------VARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLA---GVSDEHRDAFV-EK-RKA 249 (249)
T ss_pred --------------HHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHH-hc-CCC
Confidence 378999999999999999999887888999999999999899999 99999999999 66 665
No 64
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.9e-51 Score=386.15 Aligned_cols=252 Identities=18% Similarity=0.278 Sum_probs=218.9
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHH
Q 016290 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (392)
Q Consensus 10 ~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~ 89 (392)
+++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++ +++++|||+|.|++||+|+|++++...........
T Consensus 2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07112 2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADL 79 (255)
T ss_pred CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhh
Confidence 3567999999999999999999999999999999999999998 35999999999999999999998754211111111
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHH
Q 016290 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (392)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~ 168 (392)
......+++++.|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++| +.+|+|++| .++++
T Consensus 80 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~ 158 (255)
T PRK07112 80 IDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHY 158 (255)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHH
Confidence 1233346788899999999999999999999999999999999999999999999999999875 467999999 99999
Q ss_pred HhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 248 (392)
|++||++++|+||+++||||++||+++. ...
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~----------------------------------------------- 189 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLR----------------------------------------------- 189 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHH-----------------------------------------------
Confidence 9999999999999999999999986542 111
Q ss_pred HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 249 eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+.+++|++.+|.+++.+|++++.. ...+.+.+..|......++.+ +|++||+++|+
T Consensus 190 --------------------~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~---~~~~eg~~af~ 245 (255)
T PRK07112 190 --------------------KHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFAD---PENLRKIARYV 245 (255)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcC---hHHHHHHHHHH
Confidence 237899999999999999999975 457899999999999999999 99999999999
Q ss_pred hccCCCCCCCC
Q 016290 329 IEKDNAPKWDP 339 (392)
Q Consensus 329 ~dK~r~P~w~~ 339 (392)
+| |+|.|..
T Consensus 246 -~k-r~p~~~~ 254 (255)
T PRK07112 246 -ET-GKFPWEA 254 (255)
T ss_pred -cC-CCCCCCC
Confidence 56 8999974
No 65
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.3e-51 Score=386.77 Aligned_cols=244 Identities=32% Similarity=0.488 Sum_probs=227.9
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHH
Q 016290 15 LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYR 94 (392)
Q Consensus 15 ~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~ 94 (392)
.++.+++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++||++|.|++||+|+|++++... .......+...
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS--DEEEAREFFRR 78 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH--HHHHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc--ccccccccchh
Confidence 4789999999999999999999999999999999999999999999999999999999999998875 22334677788
Q ss_pred HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcC
Q 016290 95 MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTG 173 (392)
Q Consensus 95 ~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG 173 (392)
.+.+...+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.++++||
T Consensus 79 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g 158 (245)
T PF00378_consen 79 FQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTG 158 (245)
T ss_dssp HHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHH
Q 016290 174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK 253 (392)
Q Consensus 174 ~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~ 253 (392)
++++|+||+++||+|+++|++++.+.+..+
T Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~-------------------------------------------------- 188 (245)
T PF00378_consen 159 EPISAEEALELGLVDEVVPDEELDEEALEL-------------------------------------------------- 188 (245)
T ss_dssp CEEEHHHHHHTTSSSEEESGGGHHHHHHHH--------------------------------------------------
T ss_pred ccchhHHHHhhcceeEEcCchhhhHHHHHH--------------------------------------------------
Confidence 999999999999999999999877644444
Q ss_pred HHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 254 ~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
+++++..+|.+++.+|+.+++.....+.+.+..|...+..++.+ +|++||+++|+ +|
T Consensus 189 -----------------a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 189 -----------------AKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKS---EDFQEGIAAFL-EK 245 (245)
T ss_dssp -----------------HHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH-TT
T ss_pred -----------------HHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHh-Cc
Confidence 78999999999999999999998889999999999999999999 99999999999 65
No 66
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=5.9e-51 Score=390.33 Aligned_cols=252 Identities=17% Similarity=0.206 Sum_probs=223.0
Q ss_pred CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC--CccccCCCchhhccCCCC
Q 016290 8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG--RAFSAGGDLKMFYDGRNS 84 (392)
Q Consensus 8 ~~~~~~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G--~~FcaG~Dl~~l~~~~~~ 84 (392)
+.....|.+++ +++|++||||||+ .|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++......
T Consensus 7 ~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~ 85 (278)
T PLN03214 7 PGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTS 85 (278)
T ss_pred CCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccc
Confidence 44556799998 6999999999985 6999999999999999999999999999999998 799999999987532111
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCc-cCCchhHHHHhhcch
Q 016290 85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGF-HTDCGFSFIHSRLPG 163 (392)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl-~P~~G~s~~L~rl~G 163 (392)
......++.....++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G 165 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID 165 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence 1112344444456778899999999999999999999999999999999999999999999999 599999999999999
Q ss_pred -HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHH
Q 016290 164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242 (392)
Q Consensus 164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 242 (392)
..+++|+|||++++++||+++||||++||.+++.+.+.
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 204 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA----------------------------------------- 204 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH-----------------------------------------
Confidence 99999999999999999999999999999877664333
Q ss_pred hCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHH
Q 016290 243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE 322 (392)
Q Consensus 243 f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (392)
+++++|++.+|.+++.+|+++++....++++++..|.+.+..++.+ +|++|
T Consensus 205 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~e 255 (278)
T PLN03214 205 --------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSE---PSIIK 255 (278)
T ss_pred --------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC---HHHHH
Confidence 3378999999999999999999988889999999999999889999 99999
Q ss_pred HHHHHHhcc
Q 016290 323 GIRALTIEK 331 (392)
Q Consensus 323 Gv~a~l~dK 331 (392)
|+++|+ +|
T Consensus 256 gi~afl-ek 263 (278)
T PLN03214 256 ALGGVM-ER 263 (278)
T ss_pred HHHHHH-HH
Confidence 999999 55
No 67
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.5e-50 Score=391.82 Aligned_cols=256 Identities=20% Similarity=0.231 Sum_probs=219.2
Q ss_pred CCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-------CccccCCCchhhccC
Q 016290 11 EQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-------RAFSAGGDLKMFYDG 81 (392)
Q Consensus 11 ~~~V~~~~--~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-------~~FcaG~Dl~~l~~~ 81 (392)
+.+|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45688888 899999999999999999999999999999999999999999999998 599999999976321
Q ss_pred C----C-Cc-h--hHHHHH-HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe-CCeeeeccccccCccCC
Q 016290 82 R----N-SK-D--SCLEVV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFHTD 151 (392)
Q Consensus 82 ~----~-~~-~--~~~~~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat-e~a~f~~PE~~iGl~P~ 151 (392)
. . .. . ...... ...+.+...|..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 0 00 0 001111 112346677899999999999999999999999999999999 69999999999999999
Q ss_pred chhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChh
Q 016290 152 CGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQ 230 (392)
Q Consensus 152 ~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (392)
+|++++|+|++| ..+.+|+|||++++|+||+++||||++||++++.+.+.++
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~--------------------------- 234 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEW--------------------------- 234 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHH---------------------------
Confidence 999999999999 8999999999999999999999999999988877544433
Q ss_pred hHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHH
Q 016290 231 SVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTIN 310 (392)
Q Consensus 231 ~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~ 310 (392)
+++|++.+|.+++.+|++++.... .+.+....|...+..
T Consensus 235 ----------------------------------------a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~ 273 (302)
T PRK08321 235 ----------------------------------------AREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL 273 (302)
T ss_pred ----------------------------------------HHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence 789999999999999999987655 344445568888888
Q ss_pred HHHcCCccHHHHHHHHHHhccCCCCCCCC
Q 016290 311 ILRAIISADIYEGIRALTIEKDNAPKWDP 339 (392)
Q Consensus 311 ~~~~~~~~d~~eGv~a~l~dK~r~P~w~~ 339 (392)
++.+ +|++||+++|+ +| |+|.|+.
T Consensus 274 ~~~~---~d~~egi~af~-ek-r~p~~~~ 297 (302)
T PRK08321 274 AYMT---DEAQEGRDAFL-EK-RDPDWSD 297 (302)
T ss_pred HhcC---HHHHHHHHHHh-cc-CCCCCCC
Confidence 8888 99999999999 56 8999975
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-50 Score=382.01 Aligned_cols=245 Identities=20% Similarity=0.267 Sum_probs=223.0
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
+.++.++++.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.....+.
T Consensus 2 ~~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 78 (249)
T PRK07110 2 MMKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK--- 78 (249)
T ss_pred CCCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh---
Confidence 55678899999999999999999999999999999999999999999999999999999999999999876432211
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
.. +.. ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 79 ~~-~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~ 156 (249)
T PRK07110 79 GT-FTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ 156 (249)
T ss_pred hh-Hhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence 12 222 56788899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
++++||++++++||+++||++++||++++.+.+.
T Consensus 157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 190 (249)
T PRK07110 157 EMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL---------------------------------------------- 190 (249)
T ss_pred HHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887765333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
+.+++|++.||.+++.+|++++.....++.+.++.|...+..++.+ +|++|||++.
T Consensus 191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~~~ 246 (249)
T PRK07110 191 ---------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQ---PEVKRRIESL 246 (249)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCC---HhHHHHHHHh
Confidence 3378999999999999999999998899999999999999999999 9999999986
Q ss_pred H
Q 016290 328 T 328 (392)
Q Consensus 328 l 328 (392)
-
T Consensus 247 ~ 247 (249)
T PRK07110 247 Y 247 (249)
T ss_pred c
Confidence 3
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-50 Score=379.18 Aligned_cols=251 Identities=23% Similarity=0.313 Sum_probs=219.1
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhH
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
|+++.|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++..... ..
T Consensus 1 ~~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~-- 77 (258)
T PRK06190 1 MTEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGS-AY-- 77 (258)
T ss_pred CCCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccc-hh--
Confidence 355679999999999999999999999999999999999999999999999999999999999999999864211 11
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~ 167 (392)
.. ......++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..++
T Consensus 78 ~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 78 GA-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred hH-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 11 223456788899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCC
Q 016290 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (392)
Q Consensus 168 ~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 247 (392)
+|++||++++|+||+++||||++||++++.+.+.+
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------- 191 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARR--------------------------------------------- 191 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998877654333
Q ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 016290 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (392)
Q Consensus 248 ~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~ 327 (392)
++++|+++||.+++.+|++++.....++.+.+..|...+..++.+. ++++..-++.-
T Consensus 192 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~-~~~~~~~~~~~ 248 (258)
T PRK06190 192 ----------------------LAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRSV-SPDGIAARREA 248 (258)
T ss_pred ----------------------HHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 3789999999999999999999888899999999999999988873 34444434333
Q ss_pred Hhcc
Q 016290 328 TIEK 331 (392)
Q Consensus 328 l~dK 331 (392)
++.+
T Consensus 249 ~~~~ 252 (258)
T PRK06190 249 VMAR 252 (258)
T ss_pred HHHh
Confidence 3344
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.8e-48 Score=400.10 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=223.2
Q ss_pred EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhh-CCCceEEEEEcCCCc-cccCCCchhh
Q 016290 14 VLGEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWEK-DDQAKLVIVKGVGRA-FSAGGDLKMF 78 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~l-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~Vvl~g~G~~-FcaG~Dl~~l 78 (392)
|.++++++|++||||||+++ |+||.+|+.+|.+++..++. |++|++|||||.|++ ||+|+|++..
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 44566899999999999999 99999999999999999984 599999999999976 9999999842
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe-cCceeccc-ccccccCceEEE-------eCCeeeeccccccCcc
Q 016290 79 YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA-HGITMGGG-ASLMVPLKFSVV-------TEKTVFSTPEASIGFH 149 (392)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v-~G~a~GgG-~~lal~~d~ria-------te~a~f~~PE~~iGl~ 149 (392)
.. .+.......+....+++..|..++||+||+| ||+|+||| ++|+++||+||+ +++++|++||+++|++
T Consensus 340 ~~--~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~ 417 (546)
T TIGR03222 340 AH--KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLY 417 (546)
T ss_pred cc--ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccC
Confidence 21 1111112333333457889999999999999 89999999 999999999999 8999999999999999
Q ss_pred CCchhHHHHhhcc-h-HHH--HHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhccc
Q 016290 150 TDCGFSFIHSRLP-G-HLG--EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDV 225 (392)
Q Consensus 150 P~~G~s~~L~rl~-G-~~a--~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 225 (392)
|++|++++|+|++ | .++ ..+++||++++|+||+++|||+++||++++.+.+.++
T Consensus 418 p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~---------------------- 475 (546)
T TIGR03222 418 PMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIA---------------------- 475 (546)
T ss_pred CCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHH----------------------
Confidence 9999999999998 8 777 5599999999999999999999999998887644433
Q ss_pred CCChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHH-HHHH
Q 016290 226 QLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKE 304 (392)
Q Consensus 226 ~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E 304 (392)
+++|+++||.+++.+|++++.+...++++. +..|
T Consensus 476 ---------------------------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e 510 (546)
T TIGR03222 476 ---------------------------------------------LEERASFSPDALTGLEANLRFAGPETMETRIFGRL 510 (546)
T ss_pred ---------------------------------------------HHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHH
Confidence 789999999999999999999999999999 9999
Q ss_pred HHHHHHHHHcCCccHHHH---HHHHHHhccCCCCCCCCC
Q 016290 305 FRLTINILRAIISADIYE---GIRALTIEKDNAPKWDPP 340 (392)
Q Consensus 305 ~~~~~~~~~~~~~~d~~e---Gv~a~l~dK~r~P~w~~~ 340 (392)
...+..++.+ +|.+| |++||+ +| |+|+|+-.
T Consensus 511 ~~~~~~~~~~---~d~~e~~~g~~af~-ek-r~p~f~~~ 544 (546)
T TIGR03222 511 TAWQNWIFNR---PNAVGENGALKVYG-SG-KKAQFDME 544 (546)
T ss_pred HHHHHHHhcC---CcccchhhHHHHHc-cC-CCCCCCcc
Confidence 9999999999 99999 999999 66 89999754
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.9e-48 Score=398.81 Aligned_cols=253 Identities=12% Similarity=0.061 Sum_probs=222.1
Q ss_pred EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhh-CCCceEEEEEcCC-CccccCCCchhhc
Q 016290 15 LGEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWEK-DDQAKLVIVKGVG-RAFSAGGDLKMFY 79 (392)
Q Consensus 15 ~~~~~~~v~~itLnrp~~l-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~Vvl~g~G-~~FcaG~Dl~~l~ 79 (392)
.++++++|++||||||+++ |+||.+|+.+|.++++.++. |++||+|||||.| ++||+|+|++...
T Consensus 265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~ 344 (550)
T PRK08184 265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLA 344 (550)
T ss_pred EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhc
Confidence 3345689999999999998 68999999999999999986 7999999999999 5999999987322
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec-Cceeccc-ccccccCceEEEe-------CCeeeeccccccCccC
Q 016290 80 DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH-GITMGGG-ASLMVPLKFSVVT-------EKTVFSTPEASIGFHT 150 (392)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~-G~a~GgG-~~lal~~d~riat-------e~a~f~~PE~~iGl~P 150 (392)
... .......+.....++..|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++||+++|++|
T Consensus 345 -~~~-~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p 422 (550)
T PRK08184 345 -HKD-HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYP 422 (550)
T ss_pred -ccc-hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCC
Confidence 111 111123333344577889999999999997 9999999 9999999999999 9999999999999999
Q ss_pred CchhHHHHhhc-ch-HHHHHH--hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC
Q 016290 151 DCGFSFIHSRL-PG-HLGEFL--ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ 226 (392)
Q Consensus 151 ~~G~s~~L~rl-~G-~~a~~L--~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 226 (392)
++|++++|+|+ +| .+++++ ++||++++|+||+++||||++||++++.+.+..+
T Consensus 423 ~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~----------------------- 479 (550)
T PRK08184 423 MVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIA----------------------- 479 (550)
T ss_pred CCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHH-----------------------
Confidence 99999999988 69 888886 5999999999999999999999998887644444
Q ss_pred CChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHH-HHHHH
Q 016290 227 LDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKEF 305 (392)
Q Consensus 227 ~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E~ 305 (392)
+++|+++||.+++.+|++++.+...+++++ +..|.
T Consensus 480 --------------------------------------------a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~ 515 (550)
T PRK08184 480 --------------------------------------------LEERASLSPDALTGMEANLRFAGPETMETRIFGRLT 515 (550)
T ss_pred --------------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999999999999999999999 99999
Q ss_pred HHHHHHHHcCCccHHHH---HHHHHHhccCCCCCCCCCC
Q 016290 306 RLTINILRAIISADIYE---GIRALTIEKDNAPKWDPPT 341 (392)
Q Consensus 306 ~~~~~~~~~~~~~d~~e---Gv~a~l~dK~r~P~w~~~~ 341 (392)
..+..++.+ +|.+| |+++|+ +| |+|+|+..+
T Consensus 516 ~~~~~~~~~---~d~~e~~~g~~af~-ek-r~~~f~~~~ 549 (550)
T PRK08184 516 AWQNWIFQR---PNAVGEKGALKVYG-TG-QKAQFDWNR 549 (550)
T ss_pred HHHHHHhcC---CcccccchHHHHhc-cC-CCCCCCCCC
Confidence 999999999 99999 999999 66 999998754
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.5e-47 Score=352.95 Aligned_cols=205 Identities=18% Similarity=0.235 Sum_probs=184.2
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (392)
Q Consensus 19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (392)
+++|++||||||++ |+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .....+++...++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~--~~~~~~~~~~~~~ 91 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA--QEADTAARVRQQA 91 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh--hhHHHHHHHHHHH
Confidence 48999999999986 99999999999999999999999999999999999999999999754221 1112334444678
Q ss_pred HHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCccc
Q 016290 99 CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLN 177 (392)
Q Consensus 99 ~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~ 177 (392)
+..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..++++++||++++
T Consensus 92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD 171 (222)
T ss_pred HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHHH
Q 016290 178 GKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEA 257 (392)
Q Consensus 178 a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~ 257 (392)
|+||+++||+|+++|++++.+.+.
T Consensus 172 a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------------- 195 (222)
T PRK05869 172 AEEALALGLIDEMVAPDDVYDAAA-------------------------------------------------------- 195 (222)
T ss_pred HHHHHHCCCCCEeeCchHHHHHHH--------------------------------------------------------
Confidence 999999999999999887765433
Q ss_pred hhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhh
Q 016290 258 EAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGR 293 (392)
Q Consensus 258 ~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~ 293 (392)
+.+++|+..+|.+++.+|+++++..
T Consensus 196 -----------~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 196 -----------AWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3378999999999999999999764
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-46 Score=362.18 Aligned_cols=235 Identities=24% Similarity=0.350 Sum_probs=203.7
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCC-C---
Q 016290 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S--- 84 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~-~--- 84 (392)
+++..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 80 (288)
T PRK08290 1 MEYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGP 80 (288)
T ss_pred CCCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccc
Confidence 356679999999999999999999999999999999999999999999999999999999999999998742111 0
Q ss_pred -------------ch---hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCc
Q 016290 85 -------------KD---SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGF 148 (392)
Q Consensus 85 -------------~~---~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl 148 (392)
.. ...........+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 81 DQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI 160 (288)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc
Confidence 00 01111223345677889999999999999999999999999999999999999999999998
Q ss_pred cCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC
Q 016290 149 HTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL 227 (392)
Q Consensus 149 ~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 227 (392)
|+ +++++++|++| ..+++|+|||++++|+||+++||||++||++++.+.+.+
T Consensus 161 -~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~------------------------- 213 (288)
T PRK08290 161 -PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLE------------------------- 213 (288)
T ss_pred -Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHH-------------------------
Confidence 54 45778899999 999999999999999999999999999998877654433
Q ss_pred ChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhc-CHHHHHHHHHH
Q 016290 228 DGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFR 306 (392)
Q Consensus 228 ~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~ 306 (392)
++++|++.||.+++.+|++++..... ++++++..|..
T Consensus 214 ------------------------------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T PRK08290 214 ------------------------------------------LARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFD 251 (288)
T ss_pred ------------------------------------------HHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 37899999999999999999988764 79999999999
Q ss_pred HHHHHH
Q 016290 307 LTINIL 312 (392)
Q Consensus 307 ~~~~~~ 312 (392)
.....+
T Consensus 252 ~~~~~~ 257 (288)
T PRK08290 252 LHQLGH 257 (288)
T ss_pred HHHHcc
Confidence 988877
No 74
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.6e-46 Score=397.99 Aligned_cols=284 Identities=16% Similarity=0.200 Sum_probs=224.7
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC-CCchhHHH
Q 016290 13 VVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSCLE 90 (392)
Q Consensus 13 ~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~-~~~~~~~~ 90 (392)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||+|++||+|+|++++.... ........
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ 86 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence 577774 7999999999999999999999999999999999999999999999999999999999876421 11122245
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (392)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L 169 (392)
+++..++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~l 166 (715)
T PRK11730 87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEW 166 (715)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHH
Confidence 5666677888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHh---hcccCCChhhHHHHHHHHHHHhCcC
Q 016290 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEF---SEDVQLDGQSVLNKQSIIDECFSKE 246 (392)
Q Consensus 170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~i~~~f~~~ 246 (392)
++||++++|+||+++||||++||++++.+.+.++++. +...- .....+...+.. ...+++++..
T Consensus 167 lltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~----------la~~~~~~~~~~~~~~~p~a--~~~~~~~~~~- 233 (715)
T PRK11730 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQ----------AIAGKLDWKARRQPKLEPLK--LSKIEAMMSF- 233 (715)
T ss_pred HHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHH----------HhhcCCccccccCccccccc--ccchhHHHHH-
Confidence 9999999999999999999999998887665555321 11000 000000000000 0001111100
Q ss_pred CHHHHHHHHHHhhccCCcccHHHHH-HHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290 247 TVAEIIKSFEAEAGKEGNGWIGPVL-KGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (392)
Q Consensus 247 ~~eei~~~l~~~~~~~~~~~a~~~~-~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (392)
..+++.+ ++..+..|.++ .++++++.+...+++++++.|.+.+..++.+ +|++||++
T Consensus 234 ------------------~~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~d~~egi~ 291 (715)
T PRK11730 234 ------------------TTAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAKT---NVARALVG 291 (715)
T ss_pred ------------------HHHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence 1112222 34455666666 7888999988889999999999999999999 99999999
Q ss_pred HHHhcc
Q 016290 326 ALTIEK 331 (392)
Q Consensus 326 a~l~dK 331 (392)
+|+.++
T Consensus 292 aF~~~~ 297 (715)
T PRK11730 292 IFLNDQ 297 (715)
T ss_pred HHHHHH
Confidence 999543
No 75
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-45 Score=358.48 Aligned_cols=219 Identities=23% Similarity=0.313 Sum_probs=189.9
Q ss_pred CCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCC-
Q 016290 6 VKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS- 84 (392)
Q Consensus 6 ~~~~~~~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~- 84 (392)
+.+++++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++......
T Consensus 4 ~~~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~ 83 (302)
T PRK08272 4 VDLDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83 (302)
T ss_pred cccCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence 4466778899999999999999999999999999999999999999999999999999999999999999988642110
Q ss_pred ---c--------------hhH-----HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeecc
Q 016290 85 ---K--------------DSC-----LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTP 142 (392)
Q Consensus 85 ---~--------------~~~-----~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~P 142 (392)
. ..+ ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p 163 (302)
T PRK08272 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP 163 (302)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence 0 001 123455567788899999999999999999999999999999999999999999
Q ss_pred ccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHh
Q 016290 143 EASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEF 221 (392)
Q Consensus 143 E~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~ 221 (392)
|+++|.+|.. ..+++++| +++++|+|||++++|+||+++||||++||++++.+.+.++
T Consensus 164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~l------------------ 222 (302)
T PRK08272 164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERL------------------ 222 (302)
T ss_pred chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHH------------------
Confidence 9998666643 25678889 9999999999999999999999999999988776544433
Q ss_pred hcccCCChhhHHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhh
Q 016290 222 SEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE 294 (392)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~ 294 (392)
+++|++.||.+++.+|++++....
T Consensus 223 -------------------------------------------------a~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 223 -------------------------------------------------VERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred -------------------------------------------------HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999998765
No 76
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.4e-45 Score=348.00 Aligned_cols=244 Identities=19% Similarity=0.203 Sum_probs=202.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhh-----CCCceEEEEEcC-CCccccCCCchhhccCCC-Cc-
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEK-----DDQAKLVIVKGV-GRAFSAGGDLKMFYDGRN-SK- 85 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~-----d~~v~~Vvl~g~-G~~FcaG~Dl~~l~~~~~-~~- 85 (392)
|.++.+++|++|||| |+++|+||.+|+.+|.+++++++. |++|++|||+|. |++||+|+|++++..... ..
T Consensus 19 i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~ 97 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDR 97 (287)
T ss_pred EEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccch
Confidence 556678999999996 999999999999999999999998 899999999999 699999999998753111 11
Q ss_pred hhHHHHHHHHHHHHHHHH---hcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290 86 DSCLEVVYRMYWLCHHIH---TYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (392)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~---~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~ 162 (392)
.....+.+..+..+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~v 177 (287)
T PRK08788 98 DALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRV 177 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHh
Confidence 111222222333333333 79999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290 163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (392)
Q Consensus 163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 241 (392)
| .++++|++||+.++|+||+++||||++||++++.+.+.++
T Consensus 178 G~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~-------------------------------------- 219 (287)
T PRK08788 178 GPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTF-------------------------------------- 219 (287)
T ss_pred hHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHH--------------------------------------
Confidence 9 9999999999999999999999999999998876543333
Q ss_pred HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY 321 (392)
Q Consensus 242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~ 321 (392)
+++|+++ |.+...+|+..+.....++.+.++.|......++... ..-.
T Consensus 220 -----------------------------a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 267 (287)
T PRK08788 220 -----------------------------IRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLE--EKDL 267 (287)
T ss_pred -----------------------------HHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcc--cccH
Confidence 6788877 7777788887777767789999999887777655552 4566
Q ss_pred HHHHHHH
Q 016290 322 EGIRALT 328 (392)
Q Consensus 322 eGv~a~l 328 (392)
+-|..|.
T Consensus 268 ~~~~~~~ 274 (287)
T PRK08788 268 RTMERLV 274 (287)
T ss_pred HHHHHHH
Confidence 7777776
No 77
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-46 Score=329.12 Aligned_cols=260 Identities=22% Similarity=0.310 Sum_probs=233.8
Q ss_pred CCCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCC
Q 016290 10 DEQVVLGEE----IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS 84 (392)
Q Consensus 10 ~~~~V~~~~----~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~ 84 (392)
..++|.+++ +.|+.+|-+|||.+.|+|+.-|+.+|.++|+++..|+.+|+|+|++.- ..||||+|+++-....
T Consensus 25 ~~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms-- 102 (291)
T KOG1679|consen 25 NANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMS-- 102 (291)
T ss_pred CCceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCC--
Confidence 355787775 558999999999999999999999999999999999999999999877 9999999999976533
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-
Q 016290 85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG- 163 (392)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G- 163 (392)
......|......++..|.++|.|+||+++|.++|||++++++||+|||.++++|+++|++++++|+.||+++|+|++|
T Consensus 103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ 182 (291)
T KOG1679|consen 103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence 2334788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh
Q 016290 164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243 (392)
Q Consensus 164 ~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f 243 (392)
.++.+|++||+.+++.||...|||+|+|...+--+.+.
T Consensus 183 alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~------------------------------------------ 220 (291)
T KOG1679|consen 183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY------------------------------------------ 220 (291)
T ss_pred HHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH------------------------------------------
Confidence 99999999999999999999999999997654222111
Q ss_pred CcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290 244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG 323 (392)
Q Consensus 244 ~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (392)
+-|.+++++|..+-|.+++++|..|+.+.+.++..++..|-.-.++...+ .|-.||
T Consensus 221 ---------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t---~drLeg 276 (291)
T KOG1679|consen 221 ---------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPT---KDRLEG 276 (291)
T ss_pred ---------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcH---HHHHHH
Confidence 12346689999999999999999999999999999999999888888888 999999
Q ss_pred HHHHHhccCCCCCCCC
Q 016290 324 IRALTIEKDNAPKWDP 339 (392)
Q Consensus 324 v~a~l~dK~r~P~w~~ 339 (392)
+.||- +| |+|.+++
T Consensus 277 laaf~-ek-r~p~y~G 290 (291)
T KOG1679|consen 277 LAAFK-EK-RKPEYKG 290 (291)
T ss_pred HHHHH-hh-cCCCcCC
Confidence 99998 56 8999875
No 78
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-45 Score=340.63 Aligned_cols=224 Identities=18% Similarity=0.223 Sum_probs=198.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
+.|.++.+++|++||||||+ .|+||.+|+.+|.++++.++ +++++|||+|.|++||+|+|++++... ......+
T Consensus 3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~---~~~~~~~ 76 (229)
T PRK06213 3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG---AQAAIAL 76 (229)
T ss_pred ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc---hHhHHHH
Confidence 36889999999999999995 69999999999999999988 457999999999999999999988642 1222456
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L 169 (392)
+...++++..|.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|+.|+..++++.+| ..+++|
T Consensus 77 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~l 156 (229)
T PRK06213 77 LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRA 156 (229)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHH
Confidence 666678888999999999999999999999999999999999999 999999999999988888888998888 888999
Q ss_pred hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHH
Q 016290 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (392)
Q Consensus 170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~e 249 (392)
++||++++|+||+++||||++||++++.+.+.
T Consensus 157 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 188 (229)
T PRK06213 157 VINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ------------------------------------------------ 188 (229)
T ss_pred HHcCcccCHHHHHHCCCceeccChHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887765433
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q 016290 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308 (392)
Q Consensus 250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~ 308 (392)
+.+++|++.+|.+++.+|++++.....++.+.++.|.+.+
T Consensus 189 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 189 -------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred -------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 3378899999999999999999988888899888887653
No 79
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.3e-44 Score=385.99 Aligned_cols=282 Identities=20% Similarity=0.242 Sum_probs=223.3
Q ss_pred CcEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhH
Q 016290 12 QVVLGEE-IGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 12 ~~V~~~~-~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
..+.++. +++|++|||||| +++|+||.+|+.+|.++++.++.|+++++|||+|.+ ++||+|+|++++..... ....
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~-~~~~ 83 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKT-AQEA 83 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCC-HHHH
Confidence 4577777 789999999999 689999999999999999999999999999999976 89999999998854221 1112
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhcch-HH
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~ 165 (392)
..+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++| ..
T Consensus 84 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~ 163 (708)
T PRK11154 84 EALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST 163 (708)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence 344445566888999999999999999999999999999999999996 589999999999999999999999999 99
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~ 245 (392)
+++|++||++++|+||+++||||++||++++.+.+.++++... .... ..+.. . ...+.
T Consensus 164 A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~-------------~~~~---~~~~~---~---~~~~~ 221 (708)
T PRK11154 164 ALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGK-------------PARR---PLPVR---E---RLLEG 221 (708)
T ss_pred HHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcC-------------CccC---cCCch---h---hhccc
Confidence 9999999999999999999999999999988776666643200 0000 00000 0 00000
Q ss_pred CCH--HHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHH
Q 016290 246 ETV--AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG 323 (392)
Q Consensus 246 ~~~--eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (392)
... ..+++ .+...+++-.+..-.|+..+|++++.+...++++++..|.+.+..++.+ +|+++|
T Consensus 222 ~p~~~~~~~~------------~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~ 286 (708)
T PRK11154 222 NPLGRALLFK------------QARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMT---PESAAL 286 (708)
T ss_pred CchhHHHHHH------------HHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence 000 11111 1111222223334479999999999998899999999999999999999 999999
Q ss_pred HHHHHhcc
Q 016290 324 IRALTIEK 331 (392)
Q Consensus 324 v~a~l~dK 331 (392)
+++|+.++
T Consensus 287 ~~aF~~~~ 294 (708)
T PRK11154 287 RSIFFATT 294 (708)
T ss_pred HHHHHHHH
Confidence 99999765
No 80
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.3e-44 Score=350.33 Aligned_cols=275 Identities=15% Similarity=0.211 Sum_probs=209.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCC-CchhHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-SKDSCLEVVYRMYWLC 99 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~-~~~~~~~~~~~~~~l~ 99 (392)
+++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .......++....+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999 79999999998765211 1222344555556788
Q ss_pred HHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccH
Q 016290 100 HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNG 178 (392)
Q Consensus 100 ~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a 178 (392)
..|..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..++++++||++++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 8999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHcCccceecCCCChH------------HHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHh-Cc
Q 016290 179 KELVAAGLATHFVPSEKLP------------ELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF-SK 245 (392)
Q Consensus 179 ~eA~~~GLv~~vv~~~~l~------------~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f-~~ 245 (392)
+||+++|||+++||+.+++ +..+.+.++...++ .....+......++.+= ..
T Consensus 198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~k~~~~~~~~~~ 262 (360)
T TIGR03200 198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEF---------------KAGDELKAGKELIKQGTIDL 262 (360)
T ss_pred HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCC---------------cchhHHHHHHHHHhcccchH
Confidence 9999999999999988873 22222222111000 00011222222222110 00
Q ss_pred CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Q 016290 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (392)
Q Consensus 246 ~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (392)
.-+++-+ .+++.++....|.++..++..||......+...-..-...+..-+. .+..+|++
T Consensus 263 ~~l~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 323 (360)
T TIGR03200 263 SLLDEAV---------------EALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM----NEARTGFR 323 (360)
T ss_pred hHHHHHH---------------HHHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc----cccchhhH
Confidence 1122222 2345678889999999999999988776666554444444433332 48899999
Q ss_pred HHHhcc
Q 016290 326 ALTIEK 331 (392)
Q Consensus 326 a~l~dK 331 (392)
||- +|
T Consensus 324 ~~~-~~ 328 (360)
T TIGR03200 324 AFN-EG 328 (360)
T ss_pred HHh-cc
Confidence 998 53
No 81
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=8.4e-44 Score=378.99 Aligned_cols=278 Identities=18% Similarity=0.241 Sum_probs=221.4
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEE-EcCCCccccCCCchhhccCCCCchhHHHHHHH
Q 016290 17 EEIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIV-KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYR 94 (392)
Q Consensus 17 ~~~~~v~~itLnrp-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl-~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~ 94 (392)
+.+++|++|||||| ++.|+||.+|+.+|.++|+.++.|++|++||| +|.|++||+|+|++++..... ......++..
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~-~~~~~~~~~~ 84 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT-AGEAKALAQQ 84 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC-hhHHHHHHHH
Confidence 45789999999999 68999999999999999999999999999987 578899999999999854211 1222344555
Q ss_pred HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhcch-HHHHHHhh
Q 016290 95 MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (392)
Q Consensus 95 ~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~l 171 (392)
...++..|.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++| ..+++|++
T Consensus 85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lll 164 (699)
T TIGR02440 85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMIL 164 (699)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHH
Confidence 567888999999999999999999999999999999999986 799999999999999999999999999 99999999
Q ss_pred cCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCc--CCHH
Q 016290 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK--ETVA 249 (392)
Q Consensus 172 tG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~--~~~e 249 (392)
||++++|++|+++||||++||++++.+.+.++++.... ...+.+.. . +.-+. ....
T Consensus 165 tG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~----------------~~~~~~~~---~---~~~~~~~~a~~ 222 (699)
T TIGR02440 165 TGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKP----------------IRKPLSLQ---E---RLLEGTPLGRA 222 (699)
T ss_pred cCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCC----------------CCCCccch---h---hhcccCchhHH
Confidence 99999999999999999999999888777766531000 00000000 0 00000 0001
Q ss_pred HHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 016290 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (392)
Q Consensus 250 ei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~ 329 (392)
.+.+. +.+.+++-.+..-.+...+|+.++.+...+++++++.|.+.+..++.+ +|+++++++|+.
T Consensus 223 ~~~~~------------~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~~~~f~~ 287 (699)
T TIGR02440 223 LLFDQ------------AAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMT---PESAALRSIFFA 287 (699)
T ss_pred HHHHH------------HHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 11111 112223334446678899999999999999999999999999999999 999999999998
Q ss_pred ccC
Q 016290 330 EKD 332 (392)
Q Consensus 330 dK~ 332 (392)
++.
T Consensus 288 ~~~ 290 (699)
T TIGR02440 288 TTE 290 (699)
T ss_pred HHH
Confidence 653
No 82
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=7.4e-43 Score=371.92 Aligned_cols=285 Identities=15% Similarity=0.194 Sum_probs=223.2
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCC-CCchhHHH
Q 016290 13 VVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSCLE 90 (392)
Q Consensus 13 ~V~~~~-~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~-~~~~~~~~ 90 (392)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ........
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence 577774 7899999999999999999999999999999999999999999999999999999999986421 11122234
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHH
Q 016290 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (392)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L 169 (392)
+++...+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~l 166 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEW 166 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 5555567888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHH---hhcccCCChhhHHHHHHHHHHHhCcC
Q 016290 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEE---FSEDVQLDGQSVLNKQSIIDECFSKE 246 (392)
Q Consensus 170 ~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~i~~~f~~~ 246 (392)
++||++++|++|+++||||++||++++.+.+.+++.. .+.. ......+....+ ....+..+|+.
T Consensus 167 lltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 233 (714)
T TIGR02437 167 IASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD----------AINGKLDWKAKRQPKLEPL--KLSKIEAMMSF- 233 (714)
T ss_pred HHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHH----------HhhcCCcccccCCCCcccc--cccchHHHHHH-
Confidence 9999999999999999999999998887766665321 1110 000000000000 00111122111
Q ss_pred CHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Q 016290 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA 326 (392)
Q Consensus 247 ~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a 326 (392)
+++.+.........-.+-..+.+.++.+...++++++..|.+.+..++.+ ++.+..++.
T Consensus 234 ------------------~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s---~~a~~l~~~ 292 (714)
T TIGR02437 234 ------------------TTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKT---SEAKALIGL 292 (714)
T ss_pred ------------------HHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHH
Confidence 11222122223333445556667888888889999999999999999999 999999999
Q ss_pred HHhcc
Q 016290 327 LTIEK 331 (392)
Q Consensus 327 ~l~dK 331 (392)
|+.++
T Consensus 293 ff~~r 297 (714)
T TIGR02437 293 FLNDQ 297 (714)
T ss_pred HhhhH
Confidence 99765
No 83
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=314.19 Aligned_cols=261 Identities=23% Similarity=0.332 Sum_probs=224.5
Q ss_pred CCCCCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccC---
Q 016290 8 NPDEQVVLGEE---IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG--- 81 (392)
Q Consensus 8 ~~~~~~V~~~~---~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~--- 81 (392)
+.++....+.+ +..|..+.||||.|+|+||..|+.++.++++.+..||++|+|||.|+||.||||.|+..+...
T Consensus 15 ~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 15 DHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRIL 94 (292)
T ss_pred ccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcc
Confidence 34455444543 457999999999999999999999999999999999999999999999999999997665431
Q ss_pred -CCCch------hHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchh
Q 016290 82 -RNSKD------SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF 154 (392)
Q Consensus 82 -~~~~~------~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~ 154 (392)
..+++ ..+++....+..+..|.+||||||++|+|.|+|||+.|.-+||+|+|++++.|+.-|+.+|+..|+|.
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT 174 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT 174 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence 11111 12567777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcch--HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhH
Q 016290 155 SFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSV 232 (392)
Q Consensus 155 s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 232 (392)
..+||..+| .++++|.+|++.++|.||+..||+.++.|+.+-. +..
T Consensus 175 L~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l-l~~------------------------------- 222 (292)
T KOG1681|consen 175 LNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL-LNG------------------------------- 222 (292)
T ss_pred HhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH-Hhh-------------------------------
Confidence 999999999 6999999999999999999999999999875421 011
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH
Q 016290 233 LNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL 312 (392)
Q Consensus 233 ~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~ 312 (392)
+..+++.|+.+||.+++.||+.+...++.+.++.|..=..+-..++
T Consensus 223 ----------------------------------~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L 268 (292)
T KOG1681|consen 223 ----------------------------------ALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSML 268 (292)
T ss_pred ----------------------------------hHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 2345899999999999999999999999999999998888888888
Q ss_pred HcCCccHHHHHHHHHHhccCCCCCCC
Q 016290 313 RAIISADIYEGIRALTIEKDNAPKWD 338 (392)
Q Consensus 313 ~~~~~~d~~eGv~a~l~dK~r~P~w~ 338 (392)
.+ .|+.+.+.|.+ .|++.+.|.
T Consensus 269 ~s---~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 269 LS---DDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred HH---HHHHHHHHHHh-hcCCCCCcc
Confidence 88 99999999999 453333353
No 84
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=6.6e-42 Score=321.05 Aligned_cols=183 Identities=19% Similarity=0.252 Sum_probs=156.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCccccCCCchhhccCCCCchhHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAK-LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV 92 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~-~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~ 92 (392)
|.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++............+.
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 6788899999999999986 9999999999999999999999875 7777899999999999998753211111123344
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEe-CCeeeeccccccCcc-CCchhHHHHhhcch-HHH-HH
Q 016290 93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFH-TDCGFSFIHSRLPG-HLG-EF 168 (392)
Q Consensus 93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riat-e~a~f~~PE~~iGl~-P~~G~s~~L~rl~G-~~a-~~ 168 (392)
+...+++..|.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++ ++.+|++++| ..+ ++
T Consensus 81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~~ 159 (239)
T PLN02267 81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARRD 159 (239)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHHH
Confidence 455678888999999999999999999999999999999998 568999999999997 654 5778999988 888 69
Q ss_pred HhhcCCcccHHHHHHcCccceecCC-CChHH
Q 016290 169 LALTGARLNGKELVAAGLATHFVPS-EKLPE 198 (392)
Q Consensus 169 L~ltG~~l~a~eA~~~GLv~~vv~~-~~l~~ 198 (392)
|++||++++|+||+++||+|++||+ +++.+
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~ 190 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVE 190 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence 9999999999999999999999985 45554
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=7.6e-41 Score=357.27 Aligned_cols=292 Identities=17% Similarity=0.238 Sum_probs=219.1
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEE-EEEcCCCccccCCCchhhccCCCCc
Q 016290 8 NPDEQVVLGEEIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLV-IVKGVGRAFSAGGDLKMFYDGRNSK 85 (392)
Q Consensus 8 ~~~~~~V~~~~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~V-vl~g~G~~FcaG~Dl~~l~~~~~~~ 85 (392)
.+.+..+.++.+++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+|++++..... .
T Consensus 9 ~~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~-~ 87 (737)
T TIGR02441 9 LMARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT-A 87 (737)
T ss_pred CCCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC-h
Confidence 445567899999999999999998 68999999999999999999999999965 56999999999999999864211 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccccCccCCchhHHHHhhcch
Q 016290 86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG 163 (392)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~iGl~P~~G~s~~L~rl~G 163 (392)
.....++....+++..|.+++|||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 223455566677889999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred -HHHHHHhhcCCcccHHHHHHcCccceecCC--CC-----------hHHHHHHHHhccCCCHHHHHHHHHHhhccc-CCC
Q 016290 164 -HLGEFLALTGARLNGKELVAAGLATHFVPS--EK-----------LPELEKRLIGLNTGDEIAVKSAIEEFSEDV-QLD 228 (392)
Q Consensus 164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~--~~-----------l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~ 228 (392)
..+++|++||++++|++|+++||||++||+ ++ +.+.+.+++ .+..... ...
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a--------------~~l~~~~~~~~ 233 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFA--------------QGLANGKLSIN 233 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHH--------------HHhhcccCCcc
Confidence 899999999999999999999999999996 22 222222221 1100000 000
Q ss_pred h-hhHHHHHHHHHHHhCc-CCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHH
Q 016290 229 G-QSVLNKQSIIDECFSK-ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR 306 (392)
Q Consensus 229 ~-~~~~~~~~~i~~~f~~-~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~ 306 (392)
. ........ ....+. .....+++... +.+.+-.+....+...+.+.+..+...++++++..|.+
T Consensus 234 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~ 299 (737)
T TIGR02441 234 RDKGLVHKIT--QYVMTNPFVRQQVYKTAE------------DKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESK 299 (737)
T ss_pred ccccccCccc--hhhcccchhHHHHHHHHH------------HHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 00000000 000000 00111122111 11222233335566677788888888899999999999
Q ss_pred HHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 307 LTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 307 ~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
.+..++.+ ++.+.-++.|+.++
T Consensus 300 ~f~~l~~s---~~a~al~~~f~~~~ 321 (737)
T TIGR02441 300 AFGELSMT---FESKALIGLFHGQT 321 (737)
T ss_pred HHHHHhCC---HHHHHHHHHHHHHH
Confidence 99999999 99999999999865
No 86
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-41 Score=299.47 Aligned_cols=253 Identities=22% Similarity=0.339 Sum_probs=208.1
Q ss_pred CCCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC--C-CccccCCCchhhccC-C-
Q 016290 9 PDEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV--G-RAFSAGGDLKMFYDG-R- 82 (392)
Q Consensus 9 ~~~~~V~~~~~-~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~--G-~~FcaG~Dl~~l~~~-~- 82 (392)
..+.+|++++. ++++.||+|||+++||+.+..+.+|.++|..+..|++|.+|+|||. | ++||+|||-+--... .
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 45788999998 9999999999999999999999999999999999999999999985 6 999999997654331 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290 83 NSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (392)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~ 162 (392)
.+++...+ + ....+-+.|.++||||||.|+|.++|||-.|-+.||+-||+++++|+..-.++|-|-++-|+-+|+|.+
T Consensus 95 ~~d~~~~r-L-nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 95 VDDDGIPR-L-NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred cCCccCcc-c-chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 11111111 1 123566789999999999999999999999999999999999999999999999997777777899999
Q ss_pred h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290 163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (392)
Q Consensus 163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 241 (392)
| .+|+++.+.++.++|+||+++|+||.|||.++|++...+
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~--------------------------------------- 213 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQ--------------------------------------- 213 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHH---------------------------------------
Confidence 9 899999999999999999999999999999998763333
Q ss_pred HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHH--HHHHHHHHHHHHHHHcCCccH
Q 016290 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLA--ECLKKEFRLTINILRAIISAD 319 (392)
Q Consensus 242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~--~~l~~E~~~~~~~~~~~~~~d 319 (392)
| ++.|.++||++++..|.+++.... .+. +.|.-+. ..-...+ ++
T Consensus 214 ------------------------W----~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~a--t~L~YmT---dE 259 (282)
T COG0447 214 ------------------------W----AREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNA--TLLYYMT---DE 259 (282)
T ss_pred ------------------------H----HHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccc--eEEEEec---hh
Confidence 4 578899999999999999985433 111 1121111 1112345 89
Q ss_pred HHHHHHHHHhccCCCCCCC
Q 016290 320 IYEGIRALTIEKDNAPKWD 338 (392)
Q Consensus 320 ~~eGv~a~l~dK~r~P~w~ 338 (392)
.+||-.||+ +| |+|.|+
T Consensus 260 a~EGr~AF~-eK-R~Pdf~ 276 (282)
T COG0447 260 AQEGRDAFL-EK-RKPDFS 276 (282)
T ss_pred hhhhHHHHh-hc-cCCChH
Confidence 999999999 77 999986
No 87
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-40 Score=298.98 Aligned_cols=253 Identities=21% Similarity=0.298 Sum_probs=225.8
Q ss_pred CCCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchh
Q 016290 9 PDEQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS 87 (392)
Q Consensus 9 ~~~~~V~~~~~~~v~~itLn-rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~ 87 (392)
+.+..+.+++++++.+|.+| ||++.|+|+.+|..+|..+|....+|+++..++++|.|+.||+|.|++.+.....++..
T Consensus 4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 45678999999999999999 99999999999999999999999999999999999999999999999988763322211
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc
Q 016290 88 -----CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (392)
Q Consensus 88 -----~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~ 162 (392)
...+.....-+...+..+|||+||.|||+++|-|+.+...||+++|+|+++|..|++.+|+.|++|++|.||+++
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 122222233467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHH
Q 016290 163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (392)
Q Consensus 163 G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 241 (392)
| ..|.+++|.|++++|+||.+.|||+++++.+.+.+.+ +
T Consensus 164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v--~-------------------------------------- 203 (266)
T KOG0016|consen 164 GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEV--L-------------------------------------- 203 (266)
T ss_pred chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHH--H--------------------------------------
Confidence 9 9999999999999999999999999999997776422 1
Q ss_pred HhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHH
Q 016290 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY 321 (392)
Q Consensus 242 ~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~ 321 (392)
..++++++.+|.+++..|+++|......+..+.+.|.......|.+ +|+.
T Consensus 204 ---------------------------~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s---~e~~ 253 (266)
T KOG0016|consen 204 ---------------------------KKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVS---AECL 253 (266)
T ss_pred ---------------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccC---hHHH
Confidence 2378899999999999999999998999999999999999999999 9999
Q ss_pred HHHHHHHhcc
Q 016290 322 EGIRALTIEK 331 (392)
Q Consensus 322 eGv~a~l~dK 331 (392)
+.+++|+.++
T Consensus 254 ~~~~~~~~~~ 263 (266)
T KOG0016|consen 254 ARFKQYLSKK 263 (266)
T ss_pred HHHHHHhccc
Confidence 9999999543
No 88
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=5.8e-40 Score=298.21 Aligned_cols=190 Identities=30% Similarity=0.451 Sum_probs=175.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
|.+++++++++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.|+.||+|+|++++............+++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999998764332212367788
Q ss_pred HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhc
Q 016290 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (392)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~lt 172 (392)
..+++...+..++||+||++||+|+|||++++++||+||++++++|++||+++|++|+.|++++|+|++| ..+.+++++
T Consensus 81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~ 160 (195)
T cd06558 81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLT 160 (195)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred CCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290 173 GARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 173 G~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
|+.++++||+++||++++++.+++.+.+.++
T Consensus 161 g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~ 191 (195)
T cd06558 161 GRRISAEEALELGLVDEVVPDEELLAAALEL 191 (195)
T ss_pred CCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence 9999999999999999999998877655555
No 89
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=285.46 Aligned_cols=254 Identities=25% Similarity=0.347 Sum_probs=225.0
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHH
Q 016290 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (392)
Q Consensus 12 ~~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~ 91 (392)
...+++.+++|+.|+||+|+|+|.|+.+|+.+|..+|..-.++.++|+|||+..|+.||+|.|++++......+. -...
T Consensus 32 ~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~-haev 110 (287)
T KOG1682|consen 32 DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDI-HAEV 110 (287)
T ss_pred cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchH-HHHH
Confidence 346777889999999999999999999999999999999888889999999999999999999999987443222 2678
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHh
Q 016290 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (392)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ 170 (392)
|+...+++..|.++|.||||-|||.+...||.|...||++||+++++|+.|-.++|+|...-|. -|.|.+. ..++||+
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML 189 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYML 189 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998554443 3778777 8999999
Q ss_pred hcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhHHHHHHHHHHHhCcCCHHH
Q 016290 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ee 250 (392)
+||.+++++||+..||++.+||.++++..++.+
T Consensus 190 ~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i----------------------------------------------- 222 (287)
T KOG1682|consen 190 MTGLPITGEEALISGLVSKVVPAEELDKEIEEI----------------------------------------------- 222 (287)
T ss_pred HhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999987543333
Q ss_pred HHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhc
Q 016290 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (392)
Q Consensus 251 i~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~d 330 (392)
...|...|..-+...|+.......++-.+++..-.+..+.-+.- .|.+|||.+|+ +
T Consensus 223 --------------------~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql---~d~kegiasf~-~ 278 (287)
T KOG1682|consen 223 --------------------TNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQL---GDTKEGIASFF-E 278 (287)
T ss_pred --------------------HHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc---cchHHHHHHHh-c
Confidence 56777788888888999988888888899998888888887777 89999999999 6
Q ss_pred cCCCCCCCC
Q 016290 331 KDNAPKWDP 339 (392)
Q Consensus 331 K~r~P~w~~ 339 (392)
| |.|.|++
T Consensus 279 k-rp~~~~h 286 (287)
T KOG1682|consen 279 K-RPPNWKH 286 (287)
T ss_pred c-CCCCcCC
Confidence 6 9999986
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2.4e-38 Score=325.30 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=167.1
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCC-CccccCCC
Q 016290 7 KNPDEQVVLGEEIGNVRLVTLNRPR----------QLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVG-RAFSAGGD 74 (392)
Q Consensus 7 ~~~~~~~V~~~~~~~v~~itLnrp~----------~lNal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~g~G-~~FcaG~D 74 (392)
.++.++.|.++++++|++||||||+ |+|+||.+|+.+|.++|+.++ .|+++|+|||||.+ ++||+|+|
T Consensus 6 ~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~D 85 (546)
T TIGR03222 6 EPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGAN 85 (546)
T ss_pred CCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcC
Confidence 3556678999999999999999976 899999999999999999999 78999999999974 99999999
Q ss_pred chhhccCCCCch-hHHHHHHH-HHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccc-cCcc
Q 016290 75 LKMFYDGRNSKD-SCLEVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFH 149 (392)
Q Consensus 75 l~~l~~~~~~~~-~~~~~~~~-~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~-iGl~ 149 (392)
++++........ ....+... ...+...+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|++
T Consensus 86 L~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~ 165 (546)
T TIGR03222 86 IFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVL 165 (546)
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcC
Confidence 998753211111 11112111 123455678999999999999999999999999999999986 799999997 9999
Q ss_pred CCchhHHHHh--hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290 150 TDCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 150 P~~G~s~~L~--rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
|++|++++++ +.+| .++++|+|||++++|+||+++||||++||++++.+.+.++
T Consensus 166 P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l 222 (546)
T TIGR03222 166 PGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER 222 (546)
T ss_pred CccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence 9999999997 6888 8999999999999999999999999999998887655544
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2e-37 Score=319.53 Aligned_cols=197 Identities=17% Similarity=0.173 Sum_probs=166.2
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCC-CccccCCC
Q 016290 7 KNPDEQVVLGEEIGNVRLVTLNRP-------R---QLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVG-RAFSAGGD 74 (392)
Q Consensus 7 ~~~~~~~V~~~~~~~v~~itLnrp-------~---~lNal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~g~G-~~FcaG~D 74 (392)
+.+.++.+.++.+++|++|||||| + ++|+||.+|+.+|.++++.++ +|++|++|||||.+ ++||+|+|
T Consensus 10 ~~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D 89 (550)
T PRK08184 10 EPSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN 89 (550)
T ss_pred CCCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence 346678899999999999999965 4 899999999999999999999 78999999999986 99999999
Q ss_pred chhhccCCCCch-hHHHHHHHH-HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC--eeeeccccc-cCcc
Q 016290 75 LKMFYDGRNSKD-SCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFH 149 (392)
Q Consensus 75 l~~l~~~~~~~~-~~~~~~~~~-~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~--a~f~~PE~~-iGl~ 149 (392)
++.+........ ....+.+.. ..+...+..+|||+||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 998754211110 011111111 12445678999999999999999999999999999999987 899999997 9999
Q ss_pred CCchhHHHHh--hcch-HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290 150 TDCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 150 P~~G~s~~L~--rl~G-~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
|++|++++|+ |++| .++.+|++||++++|+||+++||||++||++++.+.+.++
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~ 226 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAER 226 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHH
Confidence 9999999998 7788 8999999999999999999999999999998877654444
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.96 E-value=8.2e-29 Score=206.85 Aligned_cols=117 Identities=44% Similarity=0.844 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHhhccCCcccHHHHHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 016290 232 VLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311 (392)
Q Consensus 232 ~~~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~ 311 (392)
+..+++.|++||+++|+++|+++|+. ++.+||.++++.|.++||+|+++|.++++++...++++||++|+++..++
T Consensus 2 L~~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~ 77 (118)
T PF13766_consen 2 LAEHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRC 77 (118)
T ss_dssp CHHCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999 77899999999999999999999999999999999999999999999999
Q ss_pred HHcCCccHHHHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccC
Q 016290 312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQ 355 (392)
Q Consensus 312 ~~~~~~~d~~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~ 355 (392)
+.+ +||.|||||.||||++.|+|+|+++++|++++|++||+
T Consensus 78 ~~~---~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 78 MRH---PDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp HCC---SCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred hcc---chHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 999 99999999999999999999999999999999999995
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.75 E-value=2.4e-18 Score=154.41 Aligned_cols=141 Identities=15% Similarity=0.037 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
-.+.+|.++++.++.|++|++|||++ +|.|+|+.... ...+++..+..++|||||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~--------------~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE--------------VIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH--------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence 35689999999999999999999987 69999876421 1234566777899999999999999
Q ss_pred cccccccccCceEEEeCCeeeeccccccCccCCchhHH--------HHhhcch---HHHHHHhhcCCcccHHHHHHcCcc
Q 016290 119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSF--------IHSRLPG---HLGEFLALTGARLNGKELVAAGLA 187 (392)
Q Consensus 119 GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~--------~L~rl~G---~~a~~L~ltG~~l~a~eA~~~GLv 187 (392)
|||+.|+++||++++++++.|+.+.+..+.-+...... .+++..| .....++..|..++|++|++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999987776433222222 3334334 456778889999999999999999
Q ss_pred ceecCCCChH
Q 016290 188 THFVPSEKLP 197 (392)
Q Consensus 188 ~~vv~~~~l~ 197 (392)
|.+.+.+++.
T Consensus 164 D~v~~~~e~~ 173 (177)
T cd07014 164 DSLGSFDDAV 173 (177)
T ss_pred ccCCCHHHHH
Confidence 9999865543
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.75 E-value=6.8e-18 Score=152.75 Aligned_cols=145 Identities=13% Similarity=0.130 Sum_probs=115.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
++|.|+. .++..+...+.+.|+.+++|+ ++.|+|.=. |-||++..- ..+...|
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-----------------~~i~~~l 54 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-----------------REIVQAI 54 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence 5677763 477888899999999998765 788888521 555655431 1344556
Q ss_pred HhcCCeEEEEec---CceecccccccccCceEEEeCCeeeeccccccCccCCc--------------hhHHHHhhcchH-
Q 016290 103 HTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDC--------------GFSFIHSRLPGH- 164 (392)
Q Consensus 103 ~~~~kP~IA~v~---G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~--------------G~s~~L~rl~G~- 164 (392)
..+|||+||+++ |+|+|||+.|+++||+||++++++|+++++..|..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999 99999999999999999999999999999985554432 245567787773
Q ss_pred --HHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290 165 --LGEFLALTGARLNGKELVAAGLATHFVPSE 194 (392)
Q Consensus 165 --~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~ 194 (392)
.+..++++|+.++|+||+++||+|+++++.
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 788999999999999999999999999875
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.56 E-value=6.9e-15 Score=135.59 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 016290 35 VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH 114 (392)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~ 114 (392)
.-+..++.+|.++|+.+..||+|++|||+ .||+|+|+..+. ..++.+..+..++||+||+++
T Consensus 17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~--------------~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 17 TQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE--------------VIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH--------------HHHHHHHHHHhCCCCEEEEEC
Confidence 33455789999999999999999999997 899999997652 113345667888999999999
Q ss_pred CceecccccccccCceEEEeCCeeee
Q 016290 115 GITMGGGASLMVPLKFSVVTEKTVFS 140 (392)
Q Consensus 115 G~a~GgG~~lal~~d~riate~a~f~ 140 (392)
|.|.|+|+.|+++||++++++.+.|+
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 99999999999999999999999886
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.49 E-value=1.7e-13 Score=120.80 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290 36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (392)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (392)
++..++.+|.+.|+.++.|+.++.|+|.. .|.|+|+... ..+...|..++||+|+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-----------------~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-----------------MNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-----------------HHHHHHHHHhCCCEEEEECC
Confidence 56688999999999999999999999975 4788876432 23455677788999999999
Q ss_pred ceecccccccccCceEEEeCCeeeeccccccCccCCchhH------HH----Hhhcch----------HHHHHHhhcCCc
Q 016290 116 ITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS------FI----HSRLPG----------HLGEFLALTGAR 175 (392)
Q Consensus 116 ~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s------~~----L~rl~G----------~~a~~L~ltG~~ 175 (392)
.|.++|+.|+++||.|++.+++.|++.....+.....+-. .. ..+... .....++.+|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876654321000 11 122221 124566778999
Q ss_pred ccHHHHHHcCcccee
Q 016290 176 LNGKELVAAGLATHF 190 (392)
Q Consensus 176 l~a~eA~~~GLv~~v 190 (392)
++++||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.44 E-value=6.8e-13 Score=122.63 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=74.5
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhc-
Q 016290 28 NRPRQLNVI-SSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTY- 105 (392)
Q Consensus 28 nrp~~lNal-~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~- 105 (392)
++|..+|++ +..|+.+|.++|+.+++|++|++|||+. +|.|+++... . .+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------~-------~l~~~l~~~~ 71 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------F-------ELADAIRAAR 71 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------H-------HHHHHHHHHh
Confidence 566666764 5789999999999999999999999975 5777765432 1 122333444
Q ss_pred -CCeEEEEecCceecccccccccCceEEEeCCeeeec
Q 016290 106 -KKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141 (392)
Q Consensus 106 -~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~ 141 (392)
+|||||+++|.|.|||+.++++||++++++.+.|+.
T Consensus 72 ~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~ 108 (214)
T cd07022 72 AGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGS 108 (214)
T ss_pred cCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEe
Confidence 599999999999999999999999999999998754
No 98
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.44 E-value=2.2e-13 Score=142.88 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=119.3
Q ss_pred EeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHH
Q 016290 18 EIGNVRLVTLNRPRQ--LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRM 95 (392)
Q Consensus 18 ~~~~v~~itLnrp~~--lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~ 95 (392)
.+++|++|+++.+=. .|..+....+.+.+.|+.+..|++|++|||+-. |.||+.... .. .
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------e~----i 367 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------EI----I 367 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------HH----H
Confidence 467899999987532 244444456788899999999999999999854 333332110 11 1
Q ss_pred HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeee------eccc------cccCccCCchhHHHHhh---
Q 016290 96 YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF------STPE------ASIGFHTDCGFSFIHSR--- 160 (392)
Q Consensus 96 ~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f------~~PE------~~iGl~P~~G~s~~L~r--- 160 (392)
++.+..+...+|||||.++|.|.+||..++++||.++|++.|.+ +++. .++|+.|++..+..+.+
T Consensus 368 ~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~ 447 (584)
T TIGR00705 368 RRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSL 447 (584)
T ss_pred HHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCC
Confidence 23344456678999999999999999999999999999999977 6663 68999998877765553
Q ss_pred -------------------------cch-HH-----HHHHhhcCCcccHHHHHHcCccceecC
Q 016290 161 -------------------------LPG-HL-----GEFLALTGARLNGKELVAAGLATHFVP 192 (392)
Q Consensus 161 -------------------------l~G-~~-----a~~L~ltG~~l~a~eA~~~GLv~~vv~ 192 (392)
.++ .+ ....+++|+.++|+||+++||||++-.
T Consensus 448 ~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 448 LRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC
Confidence 333 33 677889999999999999999999953
No 99
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.36 E-value=4.2e-12 Score=116.79 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
|++|.++-+=... ...++.+|.++|+.++.|+++++|+|++ +|.|+|+.... ..++.+..
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~--------------~i~~~i~~ 61 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE--------------EIYREIRR 61 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH--------------HHHHHHHH
Confidence 5666666431100 3789999999999999999999999988 48899986521 12345567
Q ss_pred HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeec
Q 016290 102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~ 141 (392)
+..++||+||+++|.|.|+|+.|+++||+|++++.+.|+.
T Consensus 62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 7888999999999999999999999999999999998853
No 100
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.35 E-value=2.7e-12 Score=113.14 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
.+...+.+.|+.++.++.+ .+.|.+. ||++.. ...+...|..++||+|++++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~insp------GG~~~~-----------------~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSP------GGDVFA-----------------GLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECC------CCCHHH-----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence 5677888888888877433 3444444 444321 134666778889999999999999
Q ss_pred cccccccccCceEEEeCCeeeeccccccCccCCchh---------------HHHHhhcch---HHHHHHhhcCCcccHHH
Q 016290 119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF---------------SFIHSRLPG---HLGEFLALTGARLNGKE 180 (392)
Q Consensus 119 GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~---------------s~~L~rl~G---~~a~~L~ltG~~l~a~e 180 (392)
|+|+.++++||+|++++++.|+++....|..+.... ...+++..| .....++.++..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 999999999999999999999998887666544322 222555556 34556666667899999
Q ss_pred HHHcCcccee
Q 016290 181 LVAAGLATHF 190 (392)
Q Consensus 181 A~~~GLv~~v 190 (392)
|+++||+|++
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999975
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.24 E-value=3.7e-11 Score=110.50 Aligned_cols=149 Identities=14% Similarity=0.157 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
|++|+++-+= + ....+|.++|+.+..|+++++|||++. |.|+|+... ..+...
T Consensus 2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-----------------~~l~~~ 54 (207)
T TIGR00706 2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-----------------EEIYEK 54 (207)
T ss_pred EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-----------------HHHHHH
Confidence 5566666432 1 235788999999999999999999874 888877642 223445
Q ss_pred HHhcC--CeEEEEecCceecccccccccCceEEEeCCeeeecccc------------ccCccCC---------chhH---
Q 016290 102 IHTYK--KTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEA------------SIGFHTD---------CGFS--- 155 (392)
Q Consensus 102 i~~~~--kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~------------~iGl~P~---------~G~s--- 155 (392)
|..++ ||+||+++|.|.|||+.|+++||.+++++++.++.--+ ++|+-+. .+..
T Consensus 55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~ 134 (207)
T TIGR00706 55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE 134 (207)
T ss_pred HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence 55565 99999999999999999999999999999987654222 2333210 0000
Q ss_pred ------HHHh-----------------hcchHHHHHHhhcCCcccHHHHHHcCccceecCCCChH
Q 016290 156 ------FIHS-----------------RLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLP 197 (392)
Q Consensus 156 ------~~L~-----------------rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~ 197 (392)
-.+. |-...-...=++.|+.+++++|++.||||.+...+++.
T Consensus 135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence 0111 11111111223678999999999999999997655544
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.15 E-value=3.6e-10 Score=101.29 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
.+|.++. .+++.+...|.++|+.+++++ +..|+|.=. |.||++... ..+...|
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~~-----------------~~I~~~l 54 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDSA-----------------LEIVDLI 54 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHHH-----------------HHHHHHH
Confidence 4566653 467788899999999999886 677777432 445544321 3456777
Q ss_pred HhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchh--------HHH------Hhhcch---HH
Q 016290 103 HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF--------SFI------HSRLPG---HL 165 (392)
Q Consensus 103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~--------s~~------L~rl~G---~~ 165 (392)
..+++|+|++|+|.|.|+|+-++++||++++++++.|+.+.. ++..|+ +.+ ++..-| ..
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~ 130 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDI 130 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 889999999999999999999999999999999999998854 333333 122 111223 24
Q ss_pred HHHHhhcC-------------CcccHHHHHHcCccceecCC
Q 016290 166 GEFLALTG-------------ARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 166 a~~L~ltG-------------~~l~a~eA~~~GLv~~vv~~ 193 (392)
+..++--. -.++++||++.|++|.++++
T Consensus 131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 44443333 26999999999999999864
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.08 E-value=5.8e-10 Score=103.64 Aligned_cols=90 Identities=19% Similarity=0.076 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (392)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (392)
+.-+..++.+|.++|+++..|+.|++|||+..+..| ++.++.++ ++.+..+...+|||||.+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-----------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-----------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-----------------HHHHHHHHHhCCeEEEEe
Confidence 344578899999999999999999999999988666 66555544 234444566799999999
Q ss_pred cCceecccccccccCceEEEeCCeeeecc
Q 016290 114 HGITMGGGASLMVPLKFSVVTEKTVFSTP 142 (392)
Q Consensus 114 ~G~a~GgG~~lal~~d~riate~a~f~~P 142 (392)
+| +.+||+.|+++||.+++.+.+.|+..
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~i 113 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELT 113 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEee
Confidence 98 88999999999999999999998884
No 104
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.61 E-value=6.1e-07 Score=79.85 Aligned_cols=144 Identities=13% Similarity=0.195 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
.+|.++. .+++.+...|.+.|+.+++| .++.|+|.=. |-||++... ..+...|
T Consensus 2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-----------------~~I~~~i 54 (172)
T cd07015 2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-----------------GNIVQRI 54 (172)
T ss_pred EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence 3455543 36778888899999998765 5777777532 555554432 1234455
Q ss_pred HhcCCeEEEEec---CceecccccccccCceEEEeCCeeeeccccccCccCC----ch----hHHHHhhc------ch--
Q 016290 103 HTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD----CG----FSFIHSRL------PG-- 163 (392)
Q Consensus 103 ~~~~kP~IA~v~---G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~----~G----~s~~L~rl------~G-- 163 (392)
...++||++.++ |.|..+|.-++++||.+++.+++.++....-.|..++ .. .+..+.++ -|
T Consensus 55 ~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~ 134 (172)
T cd07015 55 QQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRN 134 (172)
T ss_pred HhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcC
Confidence 668999999999 9999999999999999999999999987764433220 00 12222222 22
Q ss_pred -HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290 164 -HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~ 193 (392)
..+..++-....++++||++.|++|+++.+
T Consensus 135 ~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 135 ATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 345556666778999999999999999976
No 105
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.58 E-value=4e-07 Score=83.21 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=89.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
-++|.|+.| ++..+...+...|..++.++..+-|.|.=. |-|||+.. ...+...
T Consensus 31 ~rii~i~g~-----I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-----------------g~~I~d~ 84 (200)
T PRK00277 31 ERIIFLGGE-----VEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-----------------GLAIYDT 84 (200)
T ss_pred CcEEEECCE-----ECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-----------------HHHHHHH
Confidence 345666543 789999999999998887644333333211 34454422 1234455
Q ss_pred HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhH-----------HH-----------Hh
Q 016290 102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS-----------FI-----------HS 159 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s-----------~~-----------L~ 159 (392)
|...+.|+++.+.|.|.+.|.-|++++ +++.++++|++.+++++..|++ .. ++
T Consensus 85 i~~~~~~v~t~~~G~aaS~a~~I~~ag-----~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a 159 (200)
T PRK00277 85 MQFIKPDVSTICIGQAASMGAFLLAAG-----AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILA 159 (200)
T ss_pred HHhcCCCEEEEEEeEeccHHHHHHhcC-----CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999888874 2344555555555555333321 11 11
Q ss_pred hcch---HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290 160 RLPG---HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 160 rl~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~ 193 (392)
..-| .....++-.+..++|+||++.||+|+++.+
T Consensus 160 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 160 EHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 1112 223334445668999999999999999975
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.58 E-value=1.9e-07 Score=82.48 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290 36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (392)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (392)
++..+..++...|..++.++.++.|+|.=. |.||++.. ...+...|..+++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-----------------~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-----------------GMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-----------------HHHHHHHHHhcCCCceEEEEe
Confidence 568899999999999998877777776432 45555421 134556677789999999999
Q ss_pred ceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHHH----Hh-----------hcch---HHHHHHhhcCCc
Q 016290 116 ITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI----HS-----------RLPG---HLGEFLALTGAR 175 (392)
Q Consensus 116 ~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~~----L~-----------rl~G---~~a~~L~ltG~~ 175 (392)
.|.++|.-++++|| .|++.+++.|.+....-|......-... +- +.-| ..-..++-.+..
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 147 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW 147 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence 99999999999999 5777777776654322121100000000 11 1112 222334445666
Q ss_pred ccHHHHHHcCcccee
Q 016290 176 LNGKELVAAGLATHF 190 (392)
Q Consensus 176 l~a~eA~~~GLv~~v 190 (392)
++|+||++.||||++
T Consensus 148 ~sa~eA~~~GliD~i 162 (162)
T cd07013 148 LSAREAVEYGFADTI 162 (162)
T ss_pred ccHHHHHHcCCCCcC
Confidence 799999999999975
No 107
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.52 E-value=1.5e-07 Score=91.20 Aligned_cols=176 Identities=16% Similarity=0.059 Sum_probs=141.6
Q ss_pred EEEEEeC--CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhccCCCCchhHHH
Q 016290 14 VLGEEIG--NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLE 90 (392)
Q Consensus 14 V~~~~~~--~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~~~~~~~~~~~ 90 (392)
.+++..+ +++.+.++ |++ |..|.+...+|..-|+.++.+..+++..+++.. +.|+||.|..+.+-+... ....
T Consensus 57 ~L~~~~Dy~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~--fspa 132 (380)
T KOG1683|consen 57 NLVETLDYTGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHF--FSPA 132 (380)
T ss_pred hccccccccccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccc--cCHH
Confidence 4455555 78888888 776 999999999999999999999999999999998 999999999998764321 1255
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCceeccc--ccccccCceEEEe--CCeeeeccccccCc-cCCchhHHHHhhcchHH
Q 016290 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGG--ASLMVPLKFSVVT--EKTVFSTPEASIGF-HTDCGFSFIHSRLPGHL 165 (392)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GgG--~~lal~~d~riat--e~a~f~~PE~~iGl-~P~~G~s~~L~rl~G~~ 165 (392)
++-+..+++....+++.|+.+++||..--|| |-++-+|.|||.- ..-..+..++..++ .|.+=.-.++....-..
T Consensus 133 ~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~ 212 (380)
T KOG1683|consen 133 HWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRV 212 (380)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccc
Confidence 6677788999999999999999999998888 8889999999997 44445788888884 44443333333332266
Q ss_pred HHHHhhcCCcccHHHHHHcCccceecCC
Q 016290 166 GEFLALTGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 166 a~~L~ltG~~l~a~eA~~~GLv~~vv~~ 193 (392)
|..-+--|.-++-.||++-|+++.+.|.
T Consensus 213 g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 213 GERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cHHHHhhccCccHHHHHhhccchhccch
Confidence 6666778899999999999999999985
No 108
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.31 E-value=7e-06 Score=75.46 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=98.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
-+.|.|+. -++..+..++...|..++..+..+.|.|.=. |-||++..- ..+...
T Consensus 35 ~r~I~l~g-----~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-----------------~~I~d~ 88 (207)
T PRK12553 35 ERIIFLGG-----QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-----------------DAIYDT 88 (207)
T ss_pred CeEEEEcc-----eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHH
Confidence 34566664 3789999999999999987553344443211 445554321 235566
Q ss_pred HHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeecccccc-CccCCchhH------------------HHHhh
Q 016290 102 IHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASI-GFHTDCGFS------------------FIHSR 160 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~i-Gl~P~~G~s------------------~~L~r 160 (392)
|..++.|+++.+.|.|.+.|.-++++|| .|++.+++.|.+..... |. ..|-. ..+..
T Consensus 89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~ 166 (207)
T PRK12553 89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAE 166 (207)
T ss_pred HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777889999999999999999999998 58999999988876543 21 11211 11122
Q ss_pred cch---HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290 161 LPG---HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 161 l~G---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~ 193 (392)
.-| .....++-.+..++|+||++.||||+++.+
T Consensus 167 ~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 167 HTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 223 233444456788999999999999999965
No 109
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.24 E-value=7e-06 Score=73.20 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
++|.|+-+ ++..+..++...|..+..++..+.|+|.=. |-|||+..- ..+...|
T Consensus 10 r~i~i~g~-----I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-----------------~~i~~~l 63 (171)
T cd07017 10 RIIFLGGP-----IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-----------------LAIYDTM 63 (171)
T ss_pred cEEEEcCE-----EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence 35666654 678899999999999998766555555322 445543321 2344556
Q ss_pred HhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHHH------Hh-----------hcch
Q 016290 103 HTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI------HS-----------RLPG 163 (392)
Q Consensus 103 ~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~~------L~-----------rl~G 163 (392)
..++.|+++.+.|.|.++|.-++++|| .|++.+++.|.+.+...+..-. ..-. +. ..-|
T Consensus 64 ~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg 141 (171)
T cd07017 64 QYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTG 141 (171)
T ss_pred HhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677899999999999999999999999 8999999999988876654322 1111 10 1112
Q ss_pred ---HHHHHHhhcCCcccHHHHHHcCcccee
Q 016290 164 ---HLGEFLALTGARLNGKELVAAGLATHF 190 (392)
Q Consensus 164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~v 190 (392)
..-..++-.+..++++||++.||+|+|
T Consensus 142 ~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 142 QPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 122333346777999999999999975
No 110
>PRK10949 protease 4; Provisional
Probab=98.21 E-value=1.3e-05 Score=84.89 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=103.0
Q ss_pred eCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHH
Q 016290 19 IGNVRLVTLNR-----PRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (392)
Q Consensus 19 ~~~v~~itLnr-----p~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (392)
.+.|++|+++- ....+.++. +.+.+.|+++..|++|++|||+-. |.||.... .+
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a-----------se--- 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA-----------SE--- 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH-----------HH---
Confidence 46788888763 222234444 467788999999999999999754 34443221 11
Q ss_pred HHHHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccc------------cccCccCCchhH------
Q 016290 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE------------ASIGFHTDCGFS------ 155 (392)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE------------~~iGl~P~~G~s------ 155 (392)
..++....+....|||||.+.|.|--||.-++++||.++|.+.|..+--- -++|+-+++-.+
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 12333444556789999999999999999999999999999976543311 124443321111
Q ss_pred -----------------------HHHhhc-----chHHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHH
Q 016290 156 -----------------------FIHSRL-----PGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 156 -----------------------~~L~rl-----~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
.|+.+. .-.--..-+..|+.++|.+|++.||||++-.-++..+.+.++
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 011110 111112224589999999999999999996544443333333
No 111
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.20 E-value=0.00014 Score=68.76 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=94.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290 33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (392)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (392)
.-+++++-.+.....++.+++. .+-+|-|.-+++++. |.+-. . ....+...++...+...+.|+|++
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE--------~---~G~~~~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE--------E---RGQGEAIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH--------h---ccHHHHHHHHHHHHhCCCCCEEEE
Confidence 4678899999999999888765 566666644333332 32211 0 112233456777888999999999
Q ss_pred ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch--HHHHHHhhcCCcccHHHHHHcCcccee
Q 016290 113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHF 190 (392)
Q Consensus 113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~~GLv~~v 190 (392)
|-|.+.|||.-....||++++.+++.+++ .++-|++..|-+-.. ..+.... .+++.++.+.|+||.+
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~i 211 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKV 211 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEe
Confidence 99999888887777999999999887664 333344444443221 2323322 7799999999999999
Q ss_pred cCCC
Q 016290 191 VPSE 194 (392)
Q Consensus 191 v~~~ 194 (392)
||.-
T Consensus 212 i~e~ 215 (256)
T PRK12319 212 IPEH 215 (256)
T ss_pred cCCC
Confidence 9853
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.19 E-value=8.1e-06 Score=73.38 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=94.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceE--EEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKL--VIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 24 ~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~--Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
+|.|+.| ++.++...+.+.|..++..+..+- |.|. |.|||+.. ...+...
T Consensus 18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~-----------------g~~i~~~ 69 (182)
T PF00574_consen 18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA-----------------GLAIYDA 69 (182)
T ss_dssp EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH-----------------HHHHHHH
T ss_pred EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH-----------------HHHHHHH
Confidence 4566655 789999999999988854333222 2233 45566532 1346677
Q ss_pred HHhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHH----HHhhcc-----------h-
Q 016290 102 IHTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSF----IHSRLP-----------G- 163 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~----~L~rl~-----------G- 163 (392)
|..++.|+++.+.|.|.+.|.-+.++|+. |++.+++.|.+.+...+..-...-.. .+.+.. |
T Consensus 70 i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~ 149 (182)
T PF00574_consen 70 IRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGL 149 (182)
T ss_dssp HHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999 99999999999888766533111111 111111 1
Q ss_pred --HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290 164 --HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~ 193 (392)
..-..++-...-++++||++.||+|+++.+
T Consensus 150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred cHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 111222233455899999999999999864
No 113
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.14 E-value=2.6e-05 Score=71.07 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=92.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
-++|.|..+ ++..+...+...|..++..+..+.|.|.=. |-||++..- ..+...
T Consensus 23 ~r~I~i~g~-----I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~ag-----------------~aI~d~ 76 (197)
T PRK14512 23 SRSIVIAGE-----INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDAG-----------------FAIFNM 76 (197)
T ss_pred CcEEEECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-----------------HHHHHH
Confidence 345555543 778899999999988876333344444211 445554321 245566
Q ss_pred HHhcCCeEEEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCch----hHHHHhhcc-----------h-
Q 016290 102 IHTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCG----FSFIHSRLP-----------G- 163 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G----~s~~L~rl~-----------G- 163 (392)
|...+.||++.++|.|.+.|.-++++||- |++.+++.|.+-...-|+..... .+-.+-+.. |
T Consensus 77 i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~ 156 (197)
T PRK14512 77 IRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQ 156 (197)
T ss_pred HHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 77789999999999999999999999985 89998888866544333211110 000111111 1
Q ss_pred --HHHHHHhhcCCcccHHHHHHcCccceecCC
Q 016290 164 --HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~ 193 (392)
.....++-....++++||++.||+|+++++
T Consensus 157 ~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 157 ELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred CHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 122233333456999999999999999975
No 114
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.09 E-value=3.5e-05 Score=70.32 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=97.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
++|-|+-| ++.++..++...|-.++.++..+-|.|.=. |-|||+.. ...+...|
T Consensus 31 Riifl~~~-----i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-----------------g~aIyd~m 84 (200)
T CHL00028 31 RLLFLGQE-----VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-----------------GLAIYDTM 84 (200)
T ss_pred CEEEECCe-----ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-----------------HHHHHHHH
Confidence 45666655 899999999999999875443343333211 44454321 13456667
Q ss_pred HhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhHH------HHhhcc-----------h
Q 016290 103 HTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSF------IHSRLP-----------G 163 (392)
Q Consensus 103 ~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s~------~L~rl~-----------G 163 (392)
...+.||...+.|.|.+.|.-|.++++ .|++.++++|.+.....|+.-+- ++- .|-++. |
T Consensus 85 ~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~-a~di~~~a~~l~~~~~~~~~~ya~~Tg 163 (200)
T CHL00028 85 QFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQ-ASEFVLEAEELLKLRETITRVYAQRTG 163 (200)
T ss_pred HhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 888999999999999999999999998 69999999988877665532111 111 111111 1
Q ss_pred ---HHHHHHhhcCCcccHHHHHHcCccceecCCC
Q 016290 164 ---HLGEFLALTGARLNGKELVAAGLATHFVPSE 194 (392)
Q Consensus 164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~ 194 (392)
..-..+.-....++|+||++.||+|+++.+.
T Consensus 164 ~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 164 KPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred cCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 1222333344559999999999999998754
No 115
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.09 E-value=0.0003 Score=68.27 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=93.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016290 32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (392)
Q Consensus 32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (392)
..-+++++-.+.....++.+++- .+-+|-|--++++++ |.+-.+ ........+..+.+.....|+|+
T Consensus 131 ~~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-----------~G~~~aiar~l~~~a~~~VP~Is 197 (322)
T CHL00198 131 NFGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-----------LGQGEAIAVNLREMFSFEVPIIC 197 (322)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-----------HhHHHHHHHHHHHHHcCCCCEEE
Confidence 34678899999999999988775 556665543333443 211100 11223344566777889999999
Q ss_pred EecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHHHHcCccceec
Q 016290 112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191 (392)
Q Consensus 112 ~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv 191 (392)
+|-|.+-|||.-....||++++.+++.++. +-|. |++..|-|-.. .+.. +-..-++++.|.++.|+||+++
T Consensus 198 VViGeggsGGAlal~~aD~V~m~e~a~~sV------isPE-g~a~Il~~d~~-~a~~-aA~~~~ita~dL~~~giiD~ii 268 (322)
T CHL00198 198 TIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPE-ACAAILWKDSK-KSLD-AAEALKITSEDLKVLGIIDEII 268 (322)
T ss_pred EEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHH-HHHHHHhcchh-hHHH-HHHHcCCCHHHHHhCCCCeEec
Confidence 999999888765455699999999987764 2344 44444544322 2222 2334588999999999999999
Q ss_pred CC
Q 016290 192 PS 193 (392)
Q Consensus 192 ~~ 193 (392)
|.
T Consensus 269 ~E 270 (322)
T CHL00198 269 PE 270 (322)
T ss_pred cC
Confidence 84
No 116
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.05 E-value=6.6e-05 Score=68.17 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=94.3
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016290 21 NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH 100 (392)
Q Consensus 21 ~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~ 100 (392)
.-++|.|+-| ++..+..++...|..++.++..+-|.|.=. |-|||+.. ...+..
T Consensus 25 ~~riI~l~g~-----I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-----------------g~~I~d 78 (191)
T TIGR00493 25 KERIIFLSGE-----VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-----------------GLAIYD 78 (191)
T ss_pred cCeEEEEccE-----EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-----------------HHHHHH
Confidence 3456666654 778888999999988887654444444211 44555421 123445
Q ss_pred HHHhcCCeEEEEecCceecccccccccCc--eEEEeCCeeeeccccccCccCCchhH----HHHhhcc-----------h
Q 016290 101 HIHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFS----FIHSRLP-----------G 163 (392)
Q Consensus 101 ~i~~~~kP~IA~v~G~a~GgG~~lal~~d--~riate~a~f~~PE~~iGl~P~~G~s----~~L~rl~-----------G 163 (392)
.|..++.|+...+.|.|.+.|.-++++++ .|++.+++.|.+.+..-|......-. -.+.++. |
T Consensus 79 ~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg 158 (191)
T TIGR00493 79 TMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTG 158 (191)
T ss_pred HHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56667778888889999999988888765 69999999998866543332111111 1112221 2
Q ss_pred ---HHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290 164 ---HLGEFLALTGARLNGKELVAAGLATHFVP 192 (392)
Q Consensus 164 ---~~a~~L~ltG~~l~a~eA~~~GLv~~vv~ 192 (392)
.....++-.+..++|+||++.||+|+++.
T Consensus 159 ~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 159 QSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 22333444566799999999999999974
No 117
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.05 E-value=0.0005 Score=66.70 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290 33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (392)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (392)
.-+++++-.+.....++.+++- .+-+|-|.-++++++ |.+..+ ....+...++.+.+.....|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-----------~G~~~aia~~l~a~s~~~VP~IsV 195 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-----------RGQSEAIARNLREMARLGVPVICT 195 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-----------HHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678899999999988888764 566666644333333 221111 112233456777788999999999
Q ss_pred ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch---HHHHHHhhcCCcccHHHHHHcCccce
Q 016290 113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALTGARLNGKELVAAGLATH 189 (392)
Q Consensus 113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G---~~a~~L~ltG~~l~a~eA~~~GLv~~ 189 (392)
|-|.+.|||.-....||++++.+++.++ +.++-|++..|-|-.. ..+.+ ..+++.++.+.|+||.
T Consensus 196 ViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae~-----~~~ta~~l~~~G~iD~ 263 (316)
T TIGR00513 196 VIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAEA-----MKITAPDLKELGLIDS 263 (316)
T ss_pred EecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHHH-----ccCCHHHHHHCCCCeE
Confidence 9999977776544469999999887665 4444455555544322 23343 4567999999999999
Q ss_pred ecCC
Q 016290 190 FVPS 193 (392)
Q Consensus 190 vv~~ 193 (392)
+||.
T Consensus 264 II~e 267 (316)
T TIGR00513 264 IIPE 267 (316)
T ss_pred eccC
Confidence 9984
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.97 E-value=0.00098 Score=66.47 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (392)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (392)
-+++++-.+.....++.+++. .+-+|-|.-+.+++ .|.+..+ ........++.+.+.....|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe-----------~Gqa~aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEE-----------LGQGEAIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHH-----------HhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 568899999999999988875 55666554333333 2221111 1122334567778899999999999
Q ss_pred cCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch--HHHHHHhhcCCcccHHHHHHcCccceec
Q 016290 114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHFV 191 (392)
Q Consensus 114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv 191 (392)
-|.+-|||.-....||++++.+++.+++ +-|.+ ++..|-+-.. ..+.. .-.+++.++++.|+||.||
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEg-aAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II 335 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEA-CAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIV 335 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHH-HHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEec
Confidence 9999556544444689999999876553 23444 4444443222 23333 3389999999999999999
Q ss_pred CC
Q 016290 192 PS 193 (392)
Q Consensus 192 ~~ 193 (392)
|.
T Consensus 336 ~E 337 (431)
T PLN03230 336 PE 337 (431)
T ss_pred cC
Confidence 84
No 119
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.96 E-value=0.00066 Score=65.98 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290 33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (392)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (392)
.-+++++-.+.....++.+++- ++-+|-|.-+.++++ |.+-.+ ....+...++.+.+.....|+|++
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-----------~G~~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-----------RGQSEAIARNLREMARLKVPIICT 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-----------ccHHHHHHHHHHHHhCCCCCEEEE
Confidence 4568899999999988888764 566666654333333 321110 112334456778889999999999
Q ss_pred ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290 113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192 (392)
Q Consensus 113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~ 192 (392)
|-|.+.|||.-....||++++.+++.++ +.++-|++..|-+-.. .+... -....+++.++.+.|+||.|+|
T Consensus 196 IiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~~~-~a~~a-ae~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 196 VIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKDAS-KAPEA-AEAMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred EeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcCch-hHHHH-HHHcCCCHHHHHHCCCceEecc
Confidence 9999977776444459998888877654 4555555556655432 12221 1145689999999999999998
Q ss_pred C
Q 016290 193 S 193 (392)
Q Consensus 193 ~ 193 (392)
.
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 4
No 120
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.92 E-value=0.00088 Score=70.86 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290 33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (392)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (392)
.-+++++-.+.....++.+++- .+-+|-|-=++++++ |.+... ........+..+.+.....|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-----------~Gq~~aIArnl~amasl~VP~ISV 286 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-----------LGQGEAIAHNLRTMFGLKVPIVSI 286 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-----------HhHHHHHHHHHHHHhCCCCCEEEE
Confidence 4577888899999988888765 456565543323333 221111 112233456777888999999999
Q ss_pred ecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290 113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192 (392)
Q Consensus 113 v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~ 192 (392)
|-|.|.|||.-....||++++.+++.++ +.++-|++..|.|-.. .+.. +-..-+|++.|.++.|+||.+||
T Consensus 287 ViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~-~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK-AAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc-cHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999988887666679999999887654 3433444445544322 1111 23445889999999999999998
Q ss_pred C
Q 016290 193 S 193 (392)
Q Consensus 193 ~ 193 (392)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 4
No 121
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.79 E-value=0.00028 Score=65.24 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHHhhCC---CceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016290 35 VISSKVVSLLAEYLEKWEKDD---QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (392)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~---~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (392)
.++..+...+...|..++..+ .+.+ .|-+ -||++..- ..+...|...+-||..
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~l-yINS------pGGsv~aG-----------------laIyd~m~~~~~~V~t 117 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISI-YINS------PGGSVYAG-----------------LGIYDTMQFISSDVAT 117 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEE-EEEC------CCcchhhH-----------------HHHHHHHHhcCCCEEE
Confidence 378888888888877776432 3332 2333 34443211 2345567777889999
Q ss_pred EecCceecccccccccCce--EEEeCCeeeeccccccCccCCchh----HHHHhhc-----------ch---HHHHHHhh
Q 016290 112 LAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGF----SFIHSRL-----------PG---HLGEFLAL 171 (392)
Q Consensus 112 ~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~----s~~L~rl-----------~G---~~a~~L~l 171 (392)
.+.|.|.+.|.-|.++||. |++.+++.|.+....-|......- .--+-++ -| ..-...+-
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD 197 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999985 889888888876665443211110 0111111 12 12223333
Q ss_pred cCCcccHHHHHHcCccceecCC
Q 016290 172 TGARLNGKELVAAGLATHFVPS 193 (392)
Q Consensus 172 tG~~l~a~eA~~~GLv~~vv~~ 193 (392)
....++|+||++.||+|+|+.+
T Consensus 198 rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 198 RDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred cCccCCHHHHHHcCCccEEeec
Confidence 4556999999999999999864
No 122
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.74 E-value=0.00036 Score=63.66 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290 35 VISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (392)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~~v~--~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (392)
.++.++...+...|..++..+.-+ .|.|- |.|||+.+- ..+...|...+-||...
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~G-----------------laIyd~m~~~~~~V~Ti 91 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYAG-----------------LAIYDTMRYIKAPVSTI 91 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhhH-----------------HHHHHHHHhcCCCEEEE
Confidence 488999999998888887643222 22333 445554321 34566677888899999
Q ss_pred ecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHHHHh------hcch-HHHHHHhhcC----------
Q 016290 113 AHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSFIHS------RLPG-HLGEFLALTG---------- 173 (392)
Q Consensus 113 v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~~L~------rl~G-~~a~~L~ltG---------- 173 (392)
+.|.|.+.|.-|+++||- |++.+++++.+....-|+. +-++-+.- +.-. -...|.--||
T Consensus 92 ~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~ 169 (201)
T PRK14513 92 CVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDM 169 (201)
T ss_pred EEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 999999999999999985 9999999998877765541 11111111 1101 1122222344
Q ss_pred ---CcccHHHHHHcCccceecCCCC
Q 016290 174 ---ARLNGKELVAAGLATHFVPSEK 195 (392)
Q Consensus 174 ---~~l~a~eA~~~GLv~~vv~~~~ 195 (392)
..++|+||++.||+|+|+++..
T Consensus 170 ~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 170 ERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred ccCcccCHHHHHHcCCCcEEeccCC
Confidence 4599999999999999997654
No 123
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.65 E-value=0.00053 Score=62.41 Aligned_cols=138 Identities=14% Similarity=0.027 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290 36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (392)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (392)
++.++..++...|..++.++..+-|.|.=. |-|||+..- ..++..|..++-||...+.|
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-----------------~aIyd~m~~~~~~V~t~~~G 92 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-----------------LGIFDTMQHVKPDVHTVCVG 92 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-----------------HHHHHHHHhcCCCEEEEEEE
Confidence 899999999999998885443333333211 444554321 23556667788899999999
Q ss_pred ceecccccccccCce--EEEeCCeeeeccccccCccCCchhH----HHHhhc-----------ch---HHHHHHhhcCCc
Q 016290 116 ITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFS----FIHSRL-----------PG---HLGEFLALTGAR 175 (392)
Q Consensus 116 ~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s----~~L~rl-----------~G---~~a~~L~ltG~~ 175 (392)
.|.+.|.-|+++++- |++.+++++.+....-|..-...-. -.|-+. -| ..-..++-....
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ 172 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFF 172 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcC
Confidence 999999999999884 8888888888766543321111000 011111 11 112223333455
Q ss_pred ccHHHHHHcCccceecCCC
Q 016290 176 LNGKELVAAGLATHFVPSE 194 (392)
Q Consensus 176 l~a~eA~~~GLv~~vv~~~ 194 (392)
++|+||++.||+|+++...
T Consensus 173 msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 173 MSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCHHHHHHcCCCcEEeccC
Confidence 9999999999999999764
No 124
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.59 E-value=0.0014 Score=62.43 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=89.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhC----CCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKD----DQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d----~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
|.++-.+..-..-+++......+..+++.+.+| ..+.+|.|.-+| |+-+.+- ...+..+ .+.+.
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg------~~~L~~~-a~i~~ 128 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEA------NAGLIAI-AEIMR 128 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhh------HHHHHHH-HHHHH
Confidence 444444444455678888889999999888762 223466665433 3333211 0111111 11122
Q ss_pred HHHHHHhcCCeEEEEecCc--eecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-H--HHHHHhhc
Q 016290 98 LCHHIHTYKKTQVALAHGI--TMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H--LGEFLALT 172 (392)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~--a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~--~a~~L~lt 172 (392)
.+..+... .|+|+++-|. |.||+..++..||++|+++++.+++. |....-...| . -...-.|.
T Consensus 129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~l~ 196 (274)
T TIGR03133 129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALV 196 (274)
T ss_pred HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhccc
Confidence 22333344 8999999999 89999999999999999998776651 1111111112 0 12233344
Q ss_pred CCcccHHHHHHcCccceecCCCC
Q 016290 173 GARLNGKELVAAGLATHFVPSEK 195 (392)
Q Consensus 173 G~~l~a~eA~~~GLv~~vv~~~~ 195 (392)
-+.+.++.....|++|.+++++.
T Consensus 197 ~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 197 WRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccchHhHhhcccceEEeCCHH
Confidence 45577777888999999998753
No 125
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.53 E-value=0.00068 Score=66.34 Aligned_cols=155 Identities=9% Similarity=0.039 Sum_probs=92.3
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (392)
Q Consensus 19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (392)
.+.|++|.++.+=..+ -...+.+++...+.....+ ..|||+-. |.||.+... ... ...
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s-----------~~a---~~~ 146 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGY-----------GLA---ASQ 146 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHH-----------HHH---HHH
Confidence 4678888887542211 1123445555555555433 46777644 444443321 000 111
Q ss_pred HHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhH-----------------------
Q 016290 99 CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS----------------------- 155 (392)
Q Consensus 99 ~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s----------------------- 155 (392)
...+....||+|+.+++.|.-||.-++++||.++|.+.+.++.--+-.. .|.....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 3345667899999999999999999999999999999887665332111 1221110
Q ss_pred --------HHHhhcc---------------hHHHHHHhhcCCcccHHHHHHcCccceecCCCCh
Q 016290 156 --------FIHSRLP---------------GHLGEFLALTGARLNGKELVAAGLATHFVPSEKL 196 (392)
Q Consensus 156 --------~~L~rl~---------------G~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l 196 (392)
-.+...+ +..-..-+.+|+.++|++|++.||||++-..+++
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 0011000 1111223458999999999999999999866554
No 126
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.52 E-value=0.00072 Score=66.22 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCceecc
Q 016290 41 VSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120 (392)
Q Consensus 41 ~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~Gg 120 (392)
.+.+.+.|+.+..|+.++.|+|.=. |-||.+..- ...++....+..-+ ||++.|++.|+-|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as--------------~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS--------------ELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH--------------HHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 5566777888889999999999633 445443211 12234444455544 9999999999999
Q ss_pred cccccccCceEEEeCCeeeec
Q 016290 121 GASLMVPLKFSVVTEKTVFST 141 (392)
Q Consensus 121 G~~lal~~d~riate~a~f~~ 141 (392)
|.-++++||.+||+++|..+=
T Consensus 143 GY~IA~aAd~I~a~p~si~GS 163 (317)
T COG0616 143 GYYIALAADKIVADPSSITGS 163 (317)
T ss_pred hhhhhccCCEEEecCCceeee
Confidence 999999999999999987653
No 127
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.39 E-value=0.0035 Score=60.56 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=96.6
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
.+|.-..|.-|.+. ..-+++....+.+..+++.+.+. .+-+|.|.-+|+ +-+. ++. ..+.. ..+..
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armq---Egi---~sL~~-~ak~~ 184 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQ---EGL---LSLMQ-MAKTS 184 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchh---hhh---hHHHh-HHHHH
Confidence 45544445555554 56789999999999999988775 578888876553 2221 110 00111 11222
Q ss_pred HHHHHHHhcCCeEEEEecCceecccc-cccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCC
Q 016290 97 WLCHHIHTYKKTQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGA 174 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GgG~-~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~ 174 (392)
..+..+.....|+|+++-|.|.||+. ..++.+|++||.+++.+++--. |.+- ..+..+ .-+
T Consensus 185 ~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp---------------rvie~~~~e~l--pe~ 247 (292)
T PRK05654 185 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP---------------RVIEQTVREKL--PEG 247 (292)
T ss_pred HHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH---------------HHHHhhhhhhh--hhh
Confidence 33444566679999999999999965 4577899999988876665221 1111 111111 111
Q ss_pred cccHHHHHHcCccceecCCCChHHHHHHH
Q 016290 175 RLNGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 175 ~l~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
.-+++-+.+.|+||.+|++.++.....++
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~ 276 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHRRELRDTLASL 276 (292)
T ss_pred hcCHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence 12455567889999999998887654444
No 128
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.38 E-value=0.009 Score=56.00 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=94.9
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKW-EKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~-~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
+|....|.=|+|.. .++.+-...+...+... +.+.++-+|.|.=... |-.|.. .......+..-+
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~-----------aE~~G~~~a~A~ 95 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRR-----------EELLGINQALAH 95 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHH-----------HHHHHHHHHHHH
Confidence 44444455566653 78888899999999885 5557777776643221 111111 111222233344
Q ss_pred HHHHHH---hcCCeEEEEecCceecccc-cccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhc-
Q 016290 98 LCHHIH---TYKKTQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT- 172 (392)
Q Consensus 98 l~~~i~---~~~kP~IA~v~G~a~GgG~-~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~lt- 172 (392)
+.+.+. ..+.|+|++|-|.++|||+ .+.+.+|.++|. |...++..+.-|++..+-|-.. ....+.-+
T Consensus 96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Al-------p~A~i~vm~~e~aa~I~~~~~~-~~~e~a~~~ 167 (238)
T TIGR03134 96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIAL-------PGAMVHVMDLESMARVTKRSVE-ELEALAKSS 167 (238)
T ss_pred HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEc-------CCcEEEecCHHHHHHHHccCHh-HHHHHHHhh
Confidence 555555 4459999999999998875 444446665555 5556667766666666665443 22222211
Q ss_pred -CCcccHHHHHHcCccceecCCCCh
Q 016290 173 -GARLNGKELVAAGLATHFVPSEKL 196 (392)
Q Consensus 173 -G~~l~a~eA~~~GLv~~vv~~~~l 196 (392)
-...+...+.+.|++|.++++.+-
T Consensus 168 ~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 168 PVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhccCHHHHHhCCCccEEeCCCCc
Confidence 124566789999999999997664
No 129
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.27 E-value=0.0037 Score=60.37 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=87.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCC----CceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDD----QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~----~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
|.++-.+..=..-+++..-...+..+++.+.++. -+.+|+|.-+| |+-+.+ . ...+..+ .+.+.
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqE---g---~~~L~~~-a~i~~ 137 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQE---A---NAGLAAI-AEIMR 137 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccc---h---HHHHHHH-HHHHH
Confidence 4444455444567888999999999999887764 25677775543 232221 0 1111111 11122
Q ss_pred HHHHHHhcCCeEEEEecCc--eecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcch---HHHHHHhhc
Q 016290 98 LCHHIHTYKKTQVALAHGI--TMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALT 172 (392)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~--a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G---~~a~~L~lt 172 (392)
.+..+... .|+|+++-|. |+||+.-++..||++|+++++.+++.- ....-...| --...-.+.
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG-----------P~VIe~~~G~e~~d~~d~~~v 205 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG-----------PEVIEQEAGVEEFDSRDRALV 205 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC-----------HHHHHHhcCCcccCHHHhccc
Confidence 22333444 9999999999 999999999999999999987766521 111111111 011222222
Q ss_pred CCcccHHHHHHcCccceecCCCC
Q 016290 173 GARLNGKELVAAGLATHFVPSEK 195 (392)
Q Consensus 173 G~~l~a~eA~~~GLv~~vv~~~~ 195 (392)
.+.+.+......|.+|.+++++.
T Consensus 206 w~~lGG~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 206 WRTTGGKHRYLSGLADALVDDDV 228 (301)
T ss_pred ccccCcceeeecccceEEeCCHH
Confidence 22233344556899999997654
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.25 E-value=0.008 Score=57.84 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=96.1
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
.+|.-..|.-|.+. ..-+++....+.+..+++.+.+. .+-+|.+..+|++ - +.++. ..+..+ .+..
T Consensus 117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----R---mqEg~---~sL~~~-ak~~ 183 (285)
T TIGR00515 117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----R---MQEAL---LSLMQM-AKTS 183 (285)
T ss_pred ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----c---cccch---hHHHhH-HHHH
Confidence 45543344444443 55789999999999999988764 6788888765543 1 11111 111111 1222
Q ss_pred HHHHHHHhcCCeEEEEecCceeccccc-ccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc
Q 016290 97 WLCHHIHTYKKTQVALAHGITMGGGAS-LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR 175 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~-lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~ 175 (392)
..+..+.....|+|+++-|+|.||+.. .++.+|++|+.+++.+++--.+ .+....| .. +.-..
T Consensus 184 ~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~---e~--lpe~~ 247 (285)
T TIGR00515 184 AALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVR---EK--LPEGF 247 (285)
T ss_pred HHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhc---Cc--cchhc
Confidence 234455666899999999999999654 5679999999999877662221 1111111 11 11111
Q ss_pred ccHHHHHHcCccceecCCCChHHHHHHH
Q 016290 176 LNGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 176 l~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
-+++=+.+.|+||.+|++.++.....++
T Consensus 248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~ 275 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHRPEMKKTLASL 275 (285)
T ss_pred CCHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence 2344467889999999999887654444
No 131
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.17 E-value=0.00098 Score=60.36 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=85.4
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEE--EcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 25 VTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIV--KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 25 itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl--~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
|.|..| ++..+-..+...|..++..+..+-|.| -+.| ||+.+- ..++..|
T Consensus 30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG------G~V~aG-----------------~AIydtm 81 (200)
T COG0740 30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVTAG-----------------LAIYDTM 81 (200)
T ss_pred EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC------cccchh-----------------HHHHHHH
Confidence 666655 555567777777766666544443333 3444 443321 2345567
Q ss_pred HhcCCeEEEEecCceecccccccccCceE--EEeCCeeeeccccccCccCCchhHHHH-hhc---------------ch-
Q 016290 103 HTYKKTQVALAHGITMGGGASLMVPLKFS--VVTEKTVFSTPEASIGFHTDCGFSFIH-SRL---------------PG- 163 (392)
Q Consensus 103 ~~~~kP~IA~v~G~a~GgG~~lal~~d~r--iate~a~f~~PE~~iGl~P~~G~s~~L-~rl---------------~G- 163 (392)
...++||...+.|.|..-|.-|+++++.. ++.+++++-..-.. |.+-+...=... ++. -|
T Consensus 82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq 160 (200)
T COG0740 82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQ 160 (200)
T ss_pred HhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999998764 66666665554443 222211110000 111 01
Q ss_pred --HHHHHHhhcCCcccHHHHHHcCccceecCCCCh
Q 016290 164 --HLGEFLALTGARLNGKELVAAGLATHFVPSEKL 196 (392)
Q Consensus 164 --~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l 196 (392)
..-....=....++|+||+++||+|+|+.+.+.
T Consensus 161 ~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 161 TLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred CHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 011111123445999999999999999987553
No 132
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.10 E-value=0.015 Score=56.05 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=88.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
|.++..+-.=..-+++....+.+..+++.+.+. .+-+|++..+|+ +-+.+ +. ..+..+-+....+...
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQE---g~---~sL~qmak~saa~~~~ 202 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQE---GS---LSLMQMAKISSALYDY 202 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccc---cc---hhhhhhHHHHHHHHHH
Confidence 333444433345688899999999999888765 477888876543 32221 11 0011111110011111
Q ss_pred HHhcCCeEEEEecCceecccccc-cccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc----c
Q 016290 102 IHTYKKTQVALAHGITMGGGASL-MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR----L 176 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~l-al~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~----l 176 (392)
...-..|+|+++.|+|.||+... ++.||++|+.+++.+++.-. .+ ... .+|+. +
T Consensus 203 ~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP------rV-----Ie~----------t~ge~lpe~f 261 (296)
T CHL00174 203 QSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK------RV-----IEQ----------TLNKTVPEGS 261 (296)
T ss_pred HHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH------HH-----HHH----------hcCCcCCccc
Confidence 22456899999999999998765 66799999977776554221 00 000 11221 1
Q ss_pred -cHHHHHHcCccceecCCCChHHHHHHH
Q 016290 177 -NGKELVAAGLATHFVPSEKLPELEKRL 203 (392)
Q Consensus 177 -~a~eA~~~GLv~~vv~~~~l~~~~~~l 203 (392)
+++-.++.|++|.+|+..+|.+...+|
T Consensus 262 q~ae~l~~~G~vD~iV~r~~lr~~l~~l 289 (296)
T CHL00174 262 QAAEYLFDKGLFDLIVPRNLLKGVLSEL 289 (296)
T ss_pred ccHHHHHhCcCceEEEcHHHHHHHHHHH
Confidence 244466899999999988887655544
No 133
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.09 E-value=0.0069 Score=56.03 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCccccC---CCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeE
Q 016290 35 VISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAG---GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQ 109 (392)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~~v~--~Vvl~g~G~~FcaG---~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~ 109 (392)
.++.++...|...|-.++.++..+ -+-|-+.|....+| |++. ....++..|...+-||
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~-----------------~glaIyD~m~~ik~~V 110 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET-----------------EAFAICDTMRYIKPPV 110 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc-----------------cHHHHHHHHHhcCCCe
Confidence 345559999998888886543222 34445666444444 1111 1133555667778889
Q ss_pred EEEecCceecccccccccCce--EEEeCCeeeeccccccCccCCchhHHHH-------hhcchH-HHHHHhhcCC-----
Q 016290 110 VALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSFIH-------SRLPGH-LGEFLALTGA----- 174 (392)
Q Consensus 110 IA~v~G~a~GgG~~lal~~d~--riate~a~f~~PE~~iGl~P~~G~s~~L-------~rl~G~-~a~~L~ltG~----- 174 (392)
...+.|.|.+.+.-|.++++- |.+.+++++.+.....|.. |.+.=+ -++--. ...|.--||+
T Consensus 111 ~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I 187 (222)
T PRK12552 111 HTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKL 187 (222)
T ss_pred EEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999985 9999999988877654432 222111 111111 1222233554
Q ss_pred --------cccHHHHHHcCccceecCCC
Q 016290 175 --------RLNGKELVAAGLATHFVPSE 194 (392)
Q Consensus 175 --------~l~a~eA~~~GLv~~vv~~~ 194 (392)
.++|+||++.||+|+++.+.
T Consensus 188 ~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 188 SKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 49999999999999999653
No 134
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.00 E-value=0.0028 Score=59.82 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (392)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (392)
+-++.+....+.++++...++..+-. +|. +-||++.. -.++...|..++.|++++|
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdL-ii~------TpGG~v~A-----------------A~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDL-IIH------TPGGLVDA-----------------AEQIARALREHPAKVTVIV 125 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEE-EEE------CCCCcHHH-----------------HHHHHHHHHhCCCCEEEEE
Confidence 56899999999999998887765533 343 33444332 1456677888999999999
Q ss_pred cCceecccccccccCceEEEeCCeeeeccccccCccCC
Q 016290 114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD 151 (392)
Q Consensus 114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~ 151 (392)
+..|+-||.-++++||-.++++.+.+|--+.++|-.|.
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA 163 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA 163 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence 99999999999999999999999999999999988773
No 135
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.99 E-value=0.0077 Score=63.85 Aligned_cols=85 Identities=8% Similarity=-0.039 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
-.+.++.++|+.+.+|+.|++|||.-.+ +.|+.+..+ ...++....+....|||||..++.+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~--------------~ei~~ai~~fk~sgKpVvA~~~~~~- 137 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL--------------VEIGSALSEFKDSGKPVYAYGTNYS- 137 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH--------------HHHHHHHHHHHhcCCeEEEEEcccc-
Confidence 3567999999999999999999998653 123333221 2223444455667899999999876
Q ss_pred cccccccccCceEEEeCCeeeec
Q 016290 119 GGGASLMVPLKFSVVTEKTVFST 141 (392)
Q Consensus 119 GgG~~lal~~d~riate~a~f~~ 141 (392)
-||.-|+.+||-+++.+.+.+++
T Consensus 138 s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 138 QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred chhhhhhhhCCEEEECCCceEEe
Confidence 57889999999999999877654
No 136
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=96.90 E-value=0.00088 Score=58.59 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=59.7
Q ss_pred HHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccc------------cCc---------cCCch-------
Q 016290 102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS------------IGF---------HTDCG------- 153 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~------------iGl---------~P~~G------- 153 (392)
.....|||||.++|.+..||.-|+.+||-+++.+.+.++..-+. +|+ +-+.+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35679999999999999999999999999999998877662221 221 12221
Q ss_pred --hHHHHhhcc---------------h--HHHHHHhhcCCcccHHHHHHcCccceecCCCChHH
Q 016290 154 --FSFIHSRLP---------------G--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPE 198 (392)
Q Consensus 154 --~s~~L~rl~---------------G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~ 198 (392)
.-..+.+++ | .--..-++.|..++|++|++.||||.+-..+++..
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~ 145 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIA 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHH
Confidence 111111111 1 01112246899999999999999999975554443
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.36 E-value=0.076 Score=55.43 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=100.5
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
.+|.-..|.-|+|. ..-+++.+-.+.+.++++.+.+ ..+-+|.|.-++. |..|-+ ......++..-
T Consensus 312 i~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G-~~~g~~-----------~E~~g~~~~~a 378 (512)
T TIGR01117 312 INGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG-FLPGVN-----------QEYGGIIRHGA 378 (512)
T ss_pred ECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC-ccccHH-----------HHHHHHHHHHH
Confidence 34443344445554 3346999999999999998876 4677777754433 444322 11133455556
Q ss_pred HHHHHHHhcCCeEEEEecCceecccccccc-----cCceEEEeCCeeeeccccccCccCCchhHHHHhhcc------hHH
Q 016290 97 WLCHHIHTYKKTQVALAHGITMGGGASLMV-----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP------GHL 165 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal-----~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~------G~~ 165 (392)
++++.+.....|.|++|-|.+.|||. +++ .+|+++|.+++ .+|+.+.-|+...+-|.- ...
T Consensus 379 ~~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a-------~~~v~~pe~a~~i~~~~~l~~~~~~~~ 450 (512)
T TIGR01117 379 KVLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTA-------EIAVMGPAGAANIIFRKDIKEAKDPAA 450 (512)
T ss_pred HHHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCC-------eEeecCHHHHHHHHhhhhcccccCHHH
Confidence 78888899999999999999988764 333 37776666665 555554444444443321 011
Q ss_pred HHHHh---hcCCcccHHHHHHcCccceecCCCChHHH
Q 016290 166 GEFLA---LTGARLNGKELVAAGLATHFVPSEKLPEL 199 (392)
Q Consensus 166 a~~L~---ltG~~l~a~eA~~~GLv~~vv~~~~l~~~ 199 (392)
...-. .--+..++..+.+.|++|.||++.+....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~ 487 (512)
T TIGR01117 451 TRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPK 487 (512)
T ss_pred HHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHH
Confidence 11111 11224477889999999999999887653
No 138
>PRK10949 protease 4; Provisional
Probab=96.18 E-value=0.075 Score=56.68 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
-.+.++.++|+++..|+.|++|||.-.+- .|+.+.. ....++....+....||+||..+..+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~--------------~~eI~~ai~~fk~sGKpVvA~~~~~~- 156 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPS--------------MQYIGKALREFRDSGKPVYAVGDSYS- 156 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHH--------------HHHHHHHHHHHHHhCCeEEEEecCcc-
Confidence 34568999999999999999999986531 1221111 12223444455667899999766665
Q ss_pred cccccccccCceEEEeCCeeeec
Q 016290 119 GGGASLMVPLKFSVVTEKTVFST 141 (392)
Q Consensus 119 GgG~~lal~~d~riate~a~f~~ 141 (392)
-+|.-|+.+||-+++.+.+.+++
T Consensus 157 s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 157 QGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred chhhhhhhhCCEEEECCCceEEE
Confidence 46889999999999998877654
No 139
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.14 E-value=0.052 Score=57.22 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=87.5
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 18 ~~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
.+|.-..|.-|.+. +.-+++....+.+..+++.+.+. .+-+|.|.-+|++ .+.+ ..... ....-+...+
T Consensus 126 V~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGa-----rl~~-q~e~~---~~~~~~g~if 195 (569)
T PLN02820 126 VHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGA-----NLPR-QAEVF---PDRDHFGRIF 195 (569)
T ss_pred ECCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCc-----CCcc-ccccc---chHhHHHHHH
Confidence 34433334444443 56789999999999999988775 5677777654433 2311 00000 0011111122
Q ss_pred HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc
Q 016290 97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR 175 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~ 175 (392)
.....+.....|+|+++-|.|.|||.-....||++|+++. +.+.+ +|........|. . .|.+.
T Consensus 196 ~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------aGP~vV~~~~Ge---~--v~~ee 259 (569)
T PLN02820 196 YNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------AGPPLVKAATGE---E--VSAED 259 (569)
T ss_pred HHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------cCHHHHHhhcCc---c--cCHHH
Confidence 2223355567899999999999999999999999999985 43333 121112111121 0 23333
Q ss_pred ccHHHHH--HcCccceecCCCC
Q 016290 176 LNGKELV--AAGLATHFVPSEK 195 (392)
Q Consensus 176 l~a~eA~--~~GLv~~vv~~~~ 195 (392)
+.+.+.+ ..|.++++++++.
T Consensus 260 LGGa~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred hCCHHHhcccccccccccCchH
Confidence 4444444 3799988887654
No 140
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.99 E-value=0.052 Score=56.50 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCC--CchhhccCCCCchhHHHHHHHHHHHHH
Q 016290 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG--DLKMFYDGRNSKDSCLEVVYRMYWLCH 100 (392)
Q Consensus 23 ~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~--Dl~~l~~~~~~~~~~~~~~~~~~~l~~ 100 (392)
.++..+.--..-+++..-...+..+++.+.++ .+.+|.|.- |+|+ ++.+-.. .... +...+.-..
T Consensus 60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~------~l~~-~g~i~~~~~ 126 (493)
T PF01039_consen 60 VVIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVE------SLMG-MGRIFRAIA 126 (493)
T ss_dssp EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHH------HHHH-HHHHHHHHH
T ss_pred EEEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhh------hhhh-hHHHHHHHH
Confidence 33334444456789999999999999988876 566777754 4455 3333221 1111 122233334
Q ss_pred HHHhcCCeEEEEecCceecccccccccCceEEEeCC-eeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcccHH
Q 016290 101 HIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGK 179 (392)
Q Consensus 101 ~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~-a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l~a~ 179 (392)
.+.. ..|+|+++.|.|.|||.-++..||++|++++ +.+.+. |...+. ..||+.++.+
T Consensus 127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~----------~~~Ge~~~~~ 184 (493)
T PF01039_consen 127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVE----------SATGEEVDSE 184 (493)
T ss_dssp HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHH----------HHHSSCTSHH
T ss_pred HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cccccc----------cccCccccch
Confidence 4555 9999999999999999999999999999997 665431 111111 2456777766
Q ss_pred HH-------HHcCccceecCCCC
Q 016290 180 EL-------VAAGLATHFVPSEK 195 (392)
Q Consensus 180 eA-------~~~GLv~~vv~~~~ 195 (392)
+. ...|.+|.++++++
T Consensus 185 ~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 185 ELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHBHHHHHHTSSSSSEEESSHH
T ss_pred hhhhhhhhcccCCCceEEEechH
Confidence 53 46899999998753
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.67 E-value=0.093 Score=54.79 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=83.7
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 19 ~~~v~~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
+|.-..|.-+... +.-+++....+.+..+++.+.++. +-+|.|.-+| |+.+.+-.... ......+ +.
T Consensus 80 ~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~~l---~~~~~~~---~~ 147 (512)
T TIGR01117 80 DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVDAL---KGYGDIF---YR 147 (512)
T ss_pred CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccchhh---hhHHHHH---HH
Confidence 4433333334433 457888889999999998887764 5677775533 33332211000 0011111 11
Q ss_pred HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe-eeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT-VFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL 176 (392)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a-~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l 176 (392)
... ..-..|+|+++-|.|.||+.-....|||+|+++++ .+.+ +|...+....| . -++.+.+
T Consensus 148 -~~~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~~~G---e--~v~~e~l 209 (512)
T TIGR01117 148 -NTI-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKTVTG---E--EVTAEQL 209 (512)
T ss_pred -HHH-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHhhcC---c--ccchhhc
Confidence 111 23358999999999999998877899999999964 3333 12111222111 1 1134445
Q ss_pred cHHHHH--HcCccceecCCCC
Q 016290 177 NGKELV--AAGLATHFVPSEK 195 (392)
Q Consensus 177 ~a~eA~--~~GLv~~vv~~~~ 195 (392)
.+.+.. ..|.+|.+++++.
T Consensus 210 GGa~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 210 GGAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred chHHHhccccceeEEecCChH
Confidence 555544 4899999887643
No 142
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.51 E-value=0.052 Score=51.22 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=90.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016290 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (392)
Q Consensus 22 v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (392)
++...++-.=-.-+|..-.-+.|..+++.+-.+ .+.+|+++.+|++ -+.+ + .-.+.+.. +.......
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGA-----RMQE---g---~lSLMQMa-ktsaAl~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGA-----RMQE---G---ILSLMQMA-KTSAALKR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcch-----hHhH---H---HHHHHHHH-HHHHHHHH
Confidence 344444433234678888888999999888765 5789999887632 1111 0 00111111 12334556
Q ss_pred HHhcCCeEEEEecCceecc-cccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcc-h-HHHHHHhhcCCcccH
Q 016290 102 IHTYKKTQVALAHGITMGG-GASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-G-HLGEFLALTGARLNG 178 (392)
Q Consensus 102 i~~~~kP~IA~v~G~a~Gg-G~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~-G-~~a~~L~ltG~~l~a 178 (392)
+..-..|+|+++..+++|| -+.+++.+|+.||-+++.+++.--+ +--.-.=-.++ | +.+.+
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpR------VIEQTire~LPegfQ~aEf---------- 254 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPR------VIEQTIREKLPEGFQTAEF---------- 254 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcch------hhhhhhcccCCcchhhHHH----------
Confidence 6778899999999999988 4679999999998877766553221 11100001111 2 34444
Q ss_pred HHHHHcCccceecCCCChHH
Q 016290 179 KELVAAGLATHFVPSEKLPE 198 (392)
Q Consensus 179 ~eA~~~GLv~~vv~~~~l~~ 198 (392)
.++.|++|.||+..++..
T Consensus 255 --LlehG~iD~iv~R~elr~ 272 (294)
T COG0777 255 --LLEHGMIDMIVHRDELRT 272 (294)
T ss_pred --HHHcCCceeeecHHHHHH
Confidence 578999999999877654
No 143
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.35 Score=48.81 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=103.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (392)
Q Consensus 19 ~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (392)
+..|.+|.++ +++++.+.+.+.+.++.++++. ..+|||.=. + .. -+.....++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ld-----------------T-PG---Gl~~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELD-----------------T-PG---GLLDSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEec-----------------C-CC---chHHHHHHH
Confidence 4467778886 4699999999999999998865 344555211 0 00 112334678
Q ss_pred HHHHHhcCCeEEEEec---CceecccccccccCceEEEeCCeeeeccccc-cC-ccCC-ch-hHHHHh------hcch--
Q 016290 99 CHHIHTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEAS-IG-FHTD-CG-FSFIHS------RLPG-- 163 (392)
Q Consensus 99 ~~~i~~~~kP~IA~v~---G~a~GgG~~lal~~d~riate~a~f~~PE~~-iG-l~P~-~G-~s~~L~------rl~G-- 163 (392)
...|.+.+.|++..+. +.|.-.|.-++++||+..+.+.|.++--..- .| -.++ .. .++++. +.-|
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 8899999999888775 3699999999999999999998887754432 22 1111 11 233333 2333
Q ss_pred -HHHHHHhhcCCcccHHHHHHcCccceecC
Q 016290 164 -HLGEFLALTGARLNGKELVAAGLATHFVP 192 (392)
Q Consensus 164 -~~a~~L~ltG~~l~a~eA~~~GLv~~vv~ 192 (392)
..+..++--...++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 46788888899999999999999987764
No 144
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.88 E-value=0.22 Score=47.46 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCcc
Q 016290 97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARL 176 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~l 176 (392)
+-...|.+++.|+||.|=|---+||+--...+|.+.+-|+++++. +.|.+.++ .|-|=. .++... -..-.+
T Consensus 179 ~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~As-ILWkD~-~ka~eA-Ae~mki 249 (317)
T COG0825 179 RNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCAS-ILWKDA-SKAKEA-AEAMKI 249 (317)
T ss_pred HHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhh-hhhcCh-hhhHHH-HHHcCC
Confidence 344567899999999999986555543334589999999999875 45555444 454432 222222 344578
Q ss_pred cHHHHHHcCccceecCC
Q 016290 177 NGKELVAAGLATHFVPS 193 (392)
Q Consensus 177 ~a~eA~~~GLv~~vv~~ 193 (392)
++.+.+++||||.+||.
T Consensus 250 ta~dLk~lgiID~II~E 266 (317)
T COG0825 250 TAHDLKELGIIDGIIPE 266 (317)
T ss_pred CHHHHHhCCCcceeccC
Confidence 99999999999999985
No 145
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.01 E-value=0.079 Score=53.59 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH---HhccCCCCCCCC
Q 016290 270 VLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL---TIEKDNAPKWDP 339 (392)
Q Consensus 270 ~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~---l~dK~r~P~w~~ 339 (392)
.++++...+|.++..+|+.++... .+....+..+......++.+ +|+.|++.+| + +| |.|.|--
T Consensus 229 ~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~---~d~~ei~~al~~~~-~k-r~~~wa~ 295 (401)
T PLN02157 229 QLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSH---DTVEEIIDSLEIEA-GR-RKDTWCI 295 (401)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcC---CCHHHHHHHHHhhh-cc-cchHHHH
Confidence 366777889999999999998663 35667788888888899998 9999999999 5 45 6788843
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.39 Score=44.97 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290 36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (392)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (392)
++.++-+.+...|-.++.++.-|=|.+-=. |-||++.+- +.++..|.-++-||-..+=|
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vtag-----------------lAIYDtMq~ik~~V~Tic~G 159 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTAG-----------------LAIYDTMQYIKPDVSTICVG 159 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccchh-----------------hhHHHHHHhhCCCceeeehh
Confidence 788899999888888876655555544321 445544211 22344456667777666677
Q ss_pred ceecccccccccCceEEEeCCeeeeccccccCccCCchhHH-----HHhh------cchH-HHHHHhhcCCc--------
Q 016290 116 ITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSF-----IHSR------LPGH-LGEFLALTGAR-------- 175 (392)
Q Consensus 116 ~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~-----~L~r------l~G~-~a~~L~ltG~~-------- 175 (392)
.|.+-|.-|..++ +..-+++||..++=++-..|+.. +.-+ +--. .-.|.--||++
T Consensus 160 ~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~ 234 (275)
T KOG0840|consen 160 LAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDM 234 (275)
T ss_pred hHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhh
Confidence 7766665444433 45667888888887763333321 1111 1111 12233346665
Q ss_pred -----ccHHHHHHcCccceecCC
Q 016290 176 -----LNGKELVAAGLATHFVPS 193 (392)
Q Consensus 176 -----l~a~eA~~~GLv~~vv~~ 193 (392)
++++||++.||+|+|+..
T Consensus 235 dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 235 DRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred cccccCCHHHHHHhcchhhhhcC
Confidence 899999999999999864
No 147
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.91 E-value=0.95 Score=47.17 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=97.2
Q ss_pred eCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 19 IGNVRLVTLNRPRQLN-VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 19 ~~~v~~itLnrp~~lN-al~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
.|...-|.-|+|.... +|+.+-.....+.++.++. -++-+|.|.-. ..|..|-+- ......+..-+
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~-----------E~~g~~~~ga~ 358 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEA-----------ERAGIIRAGAR 358 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHH-----------HHTTHHHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchh-----------hhcchHHHHHH
Confidence 4444445557776433 6999999999999999887 57788888643 233333211 11234455678
Q ss_pred HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchH------------H
Q 016290 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGH------------L 165 (392)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~------------~ 165 (392)
+++++..++.|.|.++=|-+.|||. +++++. ....+..|+.|-..+|+.+.-|+...+.+.--. .
T Consensus 359 ~~~a~~~~~vP~itvi~~~~~Gga~-~am~~~--~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 359 LLYALAEATVPKITVIVRKAYGGAY-YAMCGR--GYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHHHHHH-S-EEEEEEEEEEHHHH-HHTTGG--GGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHHHHHcCCCCEEEEEeCCccCcch-hhhccc--ccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHH
Confidence 9999999999999999999999875 333331 112233466666667776666665555442110 1
Q ss_pred HHHHhhc-CCcccHHHHHHcCccceecCCCChHHH
Q 016290 166 GEFLALT-GARLNGKELVAAGLATHFVPSEKLPEL 199 (392)
Q Consensus 166 a~~L~lt-G~~l~a~eA~~~GLv~~vv~~~~l~~~ 199 (392)
...+.-. -...++..+...|++|.++++.+....
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~ 470 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKV 470 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHH
Confidence 1111111 122578889999999999999887643
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.18 E-value=0.63 Score=48.30 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=68.2
Q ss_pred eCCEEEEEE-cCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHH
Q 016290 19 IGNVRLVTL-NRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (392)
Q Consensus 19 ~~~v~~itL-nrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (392)
+|.-..+.. +.+.+.-++..--...+..+.+.+.++. .-+|.|.- |+|+.+.+-... .+.+...+.
T Consensus 89 ~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g-~P~i~l~d-----sgGari~~~v~~-------l~g~g~iF~ 155 (526)
T COG4799 89 NGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENG-LPVIGLND-----SGGARIQEGVPS-------LAGYGRIFY 155 (526)
T ss_pred CCeEEEEEEecCceecccccccccchHHHHHHHHHHcC-CCEEEEEc-----ccccccccCccc-------cccchHHHH
Confidence 343333434 4555777888878888888887777654 44555543 334444332211 111222233
Q ss_pred HHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe
Q 016290 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT 137 (392)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a 137 (392)
-+..++.. .|.|++|-|.|.|||+-+...||+.|+++++
T Consensus 156 ~~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 156 RNARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 34445555 9999999999999999999999999999985
No 149
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=89.35 E-value=6.7 Score=41.59 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016290 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (392)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (392)
-+++.+-.+...+.++..++ -++-+|.|.-.. .|..|-+-.. ....+...++++.+.....|.|++|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p-Gf~~G~~~E~-----------~G~~~~~a~l~~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT-GFMVGSRSEA-----------SGIAKAGAKMVMAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC-CCCCCHHHHH-----------hhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 35888999999998888876 567777775322 2444432211 2345566789999999999999999
Q ss_pred cCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhhc-c------------hHH-HHHH---hhcCCcc
Q 016290 114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL-P------------GHL-GEFL---ALTGARL 176 (392)
Q Consensus 114 ~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl-~------------G~~-a~~L---~ltG~~l 176 (392)
=|.+.|||.--.+...+ ..+-.|+.|...+|..+.-|+.-.+.+. . -.. +..- -..-+..
T Consensus 447 ~g~a~G~g~~aM~g~~~---~~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAY---SPNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREA 523 (569)
T ss_pred ECCcchHHHHHhcCcCC---CCCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhC
Confidence 99999886432221111 1233455566677777777777666542 0 111 0000 1112245
Q ss_pred cHHHHHHcCccceecCCCChH
Q 016290 177 NGKELVAAGLATHFVPSEKLP 197 (392)
Q Consensus 177 ~a~eA~~~GLv~~vv~~~~l~ 197 (392)
++..+-..|++|.|+++.+-.
T Consensus 524 ~p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 524 NPYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred CHHHHHHcCCcCcccCHHHHH
Confidence 667788899999999887654
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=77.58 E-value=19 Score=37.64 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=83.5
Q ss_pred EEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHH
Q 016290 25 VTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIH 103 (392)
Q Consensus 25 itLnrp~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~ 103 (392)
|.=|.|.. .-+|+.+-.+.-.+.++-. +-.++-.|.|.-. ..|.-|-|-. .....+.-.+++++++
T Consensus 328 iIANqp~~~~G~l~~~sa~KaArFI~~c-d~~~iPlv~L~d~-pGFm~G~~~E-----------~~giik~Gakl~~A~a 394 (526)
T COG4799 328 IIANQPRHLGGVLDIDSADKAARFIRLC-DAFNIPLVFLVDT-PGFMPGTDQE-----------YGGIIKHGAKLLYAVA 394 (526)
T ss_pred EEecCccccccccchHHHHHHHHHHHhh-hccCCCeEEEeCC-CCCCCChhHH-----------hChHHHhhhHHHhhHh
Confidence 44566663 4589999999999988544 4457888877432 4576665432 1344566678999999
Q ss_pred hcCCeEEEEecCceecccccccccCceEEEeCCeeeeccccccCccCCchhHHHHhh
Q 016290 104 TYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR 160 (392)
Q Consensus 104 ~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~r 160 (392)
.+..|.|.++-|-+.|||.-....-.+- .+-.|+.|..++|..-.-|+.-.+.|
T Consensus 395 eatVPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~~ 448 (526)
T COG4799 395 EATVPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILYR 448 (526)
T ss_pred hccCCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHHH
Confidence 9999999999999999986544433332 56677788888888655555555554
No 151
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=73.28 E-value=31 Score=35.24 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=95.2
Q ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016290 24 LVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (392)
Q Consensus 24 ~itLnrp~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (392)
=|.-|+|+ ..-.|..+.-......++-.. .-.+..|.|...++ |--|.+..... ..+..-.|.++.
T Consensus 352 gIvgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~g-----------IaK~gAklv~a~ 418 (536)
T KOG0540|consen 352 GIVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAGG-----------IAKHGAKLVYAV 418 (536)
T ss_pred EEeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhhc-----------hhhhhhhhhhhh
Confidence 35567776 345677777777777666554 45788888887766 88888765422 222334688888
Q ss_pred HhcCCeEEEEecCceeccccc---ccccCceEEEeCCeeeeccccccCccCCchhHHHHhhc-----chHHHHHHhhcCC
Q 016290 103 HTYKKTQVALAHGITMGGGAS---LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL-----PGHLGEFLALTGA 174 (392)
Q Consensus 103 ~~~~kP~IA~v~G~a~GgG~~---lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl-----~G~~a~~L~ltG~ 174 (392)
+.-+.|.|.++-|.+.||-.+ -.+..|+.++.+++.++ +.-+-++.-.|.+. ......+.=..|.
T Consensus 419 a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Ia-------vmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f~n 491 (536)
T KOG0540|consen 419 ACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIA-------VMGGKQAANVIFQITLEKAVALKAPYIEKFGN 491 (536)
T ss_pred hhccCceEEEEecCccCCcccccccccCCceeEEcccceee-------eccccchhhhhhhhhhhhhhhhcchHHHHhcC
Confidence 999999999999999997544 45566666666655544 43332333344443 1111112212265
Q ss_pred cccHHHHHHcCccceecCCCChH
Q 016290 175 RLNGKELVAAGLATHFVPSEKLP 197 (392)
Q Consensus 175 ~l~a~eA~~~GLv~~vv~~~~l~ 197 (392)
++. +...|+.|.++++.+..
T Consensus 492 py~---a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 492 PYY---AAARGWDDGIIDPSDTR 511 (536)
T ss_pred ccH---HHHhhccccccChhHhh
Confidence 554 45788999998887654
No 152
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=57.92 E-value=20 Score=29.21 Aligned_cols=90 Identities=17% Similarity=0.330 Sum_probs=48.4
Q ss_pred cch-H-HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhccc----CCChhhHHH
Q 016290 161 LPG-H-LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDV----QLDGQSVLN 234 (392)
Q Consensus 161 l~G-~-~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~ 234 (392)
+.| + .|..|+.-|+...+.=. ...+++++..+...++.+...+++.++.++++|.... .........
T Consensus 5 Lsg~~KAAilLl~Lgee~Aa~vl-------k~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~ 77 (108)
T PF14842_consen 5 LSGIQKAAILLLALGEEAAAEVL-------KHLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDF 77 (108)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHH-------HHS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHHHH-------ccCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHH
Confidence 445 3 44555555655444422 3356788888889999998899999999999998731 222344456
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHH
Q 016290 235 KQSIIDECFSKETVAEIIKSFEA 257 (392)
Q Consensus 235 ~~~~i~~~f~~~~~eei~~~l~~ 257 (392)
.+..+.++|+.+-.++|++.+..
T Consensus 78 ~~~lL~~alg~~~a~~il~~~~~ 100 (108)
T PF14842_consen 78 ARRLLEKALGEEKAKEILDRLEQ 100 (108)
T ss_dssp HHH-HHHHS---HHHHH------
T ss_pred HHHHHHHHCCHHHHHHHHHHHhc
Confidence 67888999999999999998876
No 153
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=53.42 E-value=26 Score=35.85 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHhhCCCceEEEEE-cCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 016290 37 SSKVVSLLAEYLEKWEKDDQAKLVIVK-GVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (392)
Q Consensus 37 ~~~m~~~L~~~l~~~~~d~~v~~Vvl~-g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (392)
......+|..+|+.++..+++.+|||. |.| -+..+ -.|. ...+.++|+.|+.|||++| |
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL-----------~~Fn-~e~~~rai~~~~~Pvis~i-G 227 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDL-----------WSFN-DEKVARAIFLSKIPIISAV-G 227 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHh-----------hhcC-cHHHHHHHHcCCCCEEEec-C
Confidence 445566777777777665555566653 322 11211 1122 2568899999999999965 1
Q ss_pred ceecccccccccCceEEEeCCe
Q 016290 116 ITMGGGASLMVPLKFSVVTEKT 137 (392)
Q Consensus 116 ~a~GgG~~lal~~d~riate~a 137 (392)
+-.-- .-.=+.+|.|..|+++
T Consensus 228 He~D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 228 HETDF-TISDFVADLRAPTPSA 248 (432)
T ss_pred cCCCc-cHHHHhhhccCCCcHH
Confidence 11100 0122457777777654
No 154
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=52.37 E-value=31 Score=33.51 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHhhCC---CceEEEE-EcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016290 37 SSKVVSLLAEYLEKWEKDD---QAKLVIV-KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (392)
Q Consensus 37 ~~~m~~~L~~~l~~~~~d~---~v~~Vvl-~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (392)
+.....+|.++|+.+...+ .+-+||| +|. |.+..|. .| ..+.+.++|+.++.|||++
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG-------Gs~eDL~-----------~F-N~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGG-------GSIEDLW-----------AF-NDEEVARAIAASPIPVISA 113 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCC-------CChHHhc-----------cc-ChHHHHHHHHhCCCCEEEe
Confidence 3445677778888777654 4556665 342 2222221 12 2357899999999999996
Q ss_pred ecCceecccccccccCceEEEeCCee
Q 016290 113 AHGITMGGGASLMVPLKFSVVTEKTV 138 (392)
Q Consensus 113 v~G~a~GgG~~lal~~d~riate~a~ 138 (392)
| |+-.=- .-.=+.+|+|..|+++.
T Consensus 114 I-GHe~D~-ti~D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 114 I-GHETDF-TIADFVADLRAPTPTAA 137 (319)
T ss_pred c-CCCCCc-hHHHHHHHhhCCCHHHH
Confidence 5 221100 11223567777777543
No 155
>smart00250 PLEC Plectin repeat.
Probab=47.09 E-value=15 Score=23.84 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=17.2
Q ss_pred hcCCcccHHHHHHcCccce
Q 016290 171 LTGARLNGKELVAAGLATH 189 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~ 189 (392)
.||++++-.||++.||++.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999974
No 156
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=46.54 E-value=49 Score=32.47 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 44 LAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 44 L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
+.+.|+.+++||+.++|++-+.+. + .......+|... ....||+|+++-|.+-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g-----G---------~~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG-----G---------TAEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC-----C---------chhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 346667777777777777766520 0 001111333322 2468999999999874
No 157
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=46.30 E-value=49 Score=31.88 Aligned_cols=73 Identities=27% Similarity=0.415 Sum_probs=46.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHhhCCCceEEEEEcCCCccccCCCc
Q 016290 19 IGNVRLVTLNRPRQLNVISSKVVSLLA-----------------------EYLEKWEKDDQAKLVIVKGVGRAFSAGGDL 75 (392)
Q Consensus 19 ~~~v~~itLnrp~~lNal~~~m~~~L~-----------------------~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl 75 (392)
.|+|++|. | --.|+.+++.+|. ++|+.+++||..++||+-|.= |++-
T Consensus 145 ~G~IGiVS--r---SGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEi-----GG~a 214 (293)
T COG0074 145 PGNIGIVS--R---SGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEI-----GGPA 214 (293)
T ss_pred CCceEEEe--c---CcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecC-----CCcH
Confidence 56666654 2 2457777777766 678889999999999998851 1111
Q ss_pred hhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 76 KMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
++...+|.. . ...+|||||++-|.+-
T Consensus 215 ---------Ee~AA~~i~-------~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 215 ---------EEEAAEYIK-------A-NATRKPVVAYIAGRTA 240 (293)
T ss_pred ---------HHHHHHHHH-------H-hccCCCEEEEEeccCC
Confidence 111123322 1 2234999999999875
No 158
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=45.60 E-value=76 Score=24.91 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC
Q 016290 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66 (392)
Q Consensus 13 ~V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G 66 (392)
.+.++..+++.+|++..+ |+..-...+.+.+..+..++..+.|+|.-++
T Consensus 4 ~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 477788999999999854 5555566777777766554567889987665
No 159
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=43.87 E-value=2.2e+02 Score=28.14 Aligned_cols=158 Identities=12% Similarity=0.160 Sum_probs=92.0
Q ss_pred cch--HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC----ChhhHHH
Q 016290 161 LPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL----DGQSVLN 234 (392)
Q Consensus 161 l~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~ 234 (392)
+-| ..|..|+.-|+...+.=. ...+++++..+...++.+...+++.++.++.+|...... ...+...
T Consensus 7 lsg~~KAAilll~LGee~aa~vl-------~~L~~~ei~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~ 79 (334)
T PRK07194 7 MSNLEQAAILLLSMGEEAAAMVM-------QQLSREEVQRLSQKMARLSGIKVDQARQVLQRFFDDYREQSGINGASRSY 79 (334)
T ss_pred cChHHHHHHHHHHhCcHHHHHHH-------hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccchHHH
Confidence 445 345566666766554422 334667888888888888889999999999998765321 1122233
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHhhcCchHHHHHHHHHHHhhhc----CHHHHHHH
Q 016290 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGW-------IGPVLKGLKKSSPTGLKITLRSVREGREQ----SLAECLKK 303 (392)
Q Consensus 235 ~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~-------a~~~~~~l~~~sp~sl~~tk~~l~~~~~~----~l~~~l~~ 303 (392)
....+.++|+.+...+|++.+...... ..| ...++.-|..=+|.-.++.+..+...... .+.+....
T Consensus 80 ~~~~L~~alg~~~a~~il~~i~~~~~~--~~~~~L~~~~~~~la~~l~~EhPQ~iAiiL~~L~~e~AA~VL~~Lpe~~~~ 157 (334)
T PRK07194 80 LQRTLNKALGGDIAKSLINSIYGDEIR--HRMQRLQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQD 157 (334)
T ss_pred HHHHHHHHcCHHHHHHHHHHHhccccC--chHHHHHCCCHHHHHHHHHccCHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 467888889888888888877643211 112 23345555666777777777777543222 22222222
Q ss_pred HHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 304 EFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 304 E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
+.-....-+. .++++..+-|..|+
T Consensus 158 ~v~~ria~l~-~Vs~e~~~~V~e~l 181 (334)
T PRK07194 158 DILYRIAQLD-DVDRDVVDELDELI 181 (334)
T ss_pred HHHHHHHccC-CCCHHHHHHHHHHH
Confidence 2221111122 24577776665554
No 160
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=43.05 E-value=53 Score=33.64 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCeEEEEecCceeccccccc---ccCceEEEeCCe
Q 016290 96 YWLCHHIHTYKKTQVALAHGITMGGGASLM---VPLKFSVVTEKT 137 (392)
Q Consensus 96 ~~l~~~i~~~~kP~IA~v~G~a~GgG~~la---l~~d~riate~a 137 (392)
-.+.++|+.++.|+|++| |-=--.. +.+|+|-.|+++
T Consensus 215 E~vaRAi~~s~iPvISAV-----GHEtD~tL~DfVAD~RApTPTa 254 (440)
T COG1570 215 EIVARAIAASRIPVISAV-----GHETDFTLADFVADLRAPTPTA 254 (440)
T ss_pred HHHHHHHHhCCCCeEeec-----ccCCCccHHHhhhhccCCCchH
Confidence 358899999999999976 2111222 346777777644
No 161
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=41.85 E-value=13 Score=25.12 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.3
Q ss_pred hcCCcccHHHHHHcCccce
Q 016290 171 LTGARLNGKELVAAGLATH 189 (392)
Q Consensus 171 ltG~~l~a~eA~~~GLv~~ 189 (392)
-||++++-.+|++.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4899999999999999973
No 162
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=41.08 E-value=58 Score=27.77 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCccccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecCcee
Q 016290 43 LLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (392)
Q Consensus 43 ~L~~~l~~~~~d~~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (392)
.+.+.|+.+.+||.+++|++.-.+ .. +. ..| .+........ ||||+..-|.+-
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~---------------~~-d~--~~f----~~~~~~a~~~-KPVv~lk~Grt~ 93 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG---------------IG-DG--RRF----LEAARRAARR-KPVVVLKAGRTE 93 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-----------------S--H--HHH----HHHHHHHCCC-S-EEEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC---------------CC-CH--HHH----HHHHHHHhcC-CCEEEEeCCCch
Confidence 357778888889999999986543 00 11 333 3344455555 999999998743
No 163
>PLN02522 ATP citrate (pro-S)-lyase
Probab=39.80 E-value=77 Score=34.00 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=12.6
Q ss_pred cCCeEEEEecCcee
Q 016290 105 YKKTQVALAHGITM 118 (392)
Q Consensus 105 ~~kP~IA~v~G~a~ 118 (392)
..||||+++-|.+-
T Consensus 249 ~~KPVVa~kaGrsa 262 (608)
T PLN02522 249 VSKPVVAWVSGTCA 262 (608)
T ss_pred CCCCEEEEeccCCC
Confidence 68999999999876
No 164
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=38.61 E-value=12 Score=34.80 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=56.2
Q ss_pred cCCeEEEEecCceecccccccccCceE-----EEeCCeeeeccccccCccCCchhHHHHhhcch-HHHHHHhhcCCcccH
Q 016290 105 YKKTQVALAHGITMGGGASLMVPLKFS-----VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNG 178 (392)
Q Consensus 105 ~~kP~IA~v~G~a~GgG~~lal~~d~r-----iate~a~f~~PE~~iGl~P~~G~s~~L~rl~G-~~a~~L~ltG~~l~a 178 (392)
+.|--|. +-|..+||.+.+.++++.+ +..|+|..+.|+..+-++-..++. +++++.- +.-...-.-| .-.-
T Consensus 146 ~dktkiv-lfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~~~k-~i~~lc~kn~~~S~~ki~-~~~~ 222 (300)
T KOG4391|consen 146 LDKTKIV-LFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPFPMK-YIPLLCYKNKWLSYRKIG-QCRM 222 (300)
T ss_pred CCcceEE-EEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccchhh-HHHHHHHHhhhcchhhhc-cccC
Confidence 4454443 6799999999999999864 446899999999998886545444 3555433 1211111112 1111
Q ss_pred HHHHHcCccceecCCCChH
Q 016290 179 KELVAAGLATHFVPSEKLP 197 (392)
Q Consensus 179 ~eA~~~GLv~~vv~~~~l~ 197 (392)
.=..-.|+.|++||+-...
T Consensus 223 P~LFiSGlkDelVPP~~Mr 241 (300)
T KOG4391|consen 223 PFLFISGLKDELVPPVMMR 241 (300)
T ss_pred ceEEeecCccccCCcHHHH
Confidence 1233468999999986543
No 165
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=37.35 E-value=68 Score=27.94 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCC
Q 016290 43 LLAEYLEKWEKDDQAKLVIVKGVG 66 (392)
Q Consensus 43 ~L~~~l~~~~~d~~v~~Vvl~g~G 66 (392)
...++|....+||++++|+|.+-+
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~ 83 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVG 83 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEES
T ss_pred HHHHHHHHHhcCCCccEEEEEecc
Confidence 456677788899999999998754
No 166
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=34.72 E-value=69 Score=32.72 Aligned_cols=40 Identities=8% Similarity=-0.051 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCeEEEEecCceecccccccccCceEEEeCCe
Q 016290 96 YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT 137 (392)
Q Consensus 96 ~~l~~~i~~~~kP~IA~v~G~a~GgG~~lal~~d~riate~a 137 (392)
+.+..+|+.++.|||++| |+-.=- .-.=+.+|.|..|+++
T Consensus 214 e~v~~ai~~~~~Pvis~I-GHE~D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 214 EAVARAIAASRIPVISAV-GHETDF-TIADFVADLRAPTPTA 253 (438)
T ss_pred HHHHHHHHcCCCCEEEec-cCCCCc-cHHHHhhhccCCChHH
Confidence 578999999999999965 111100 1123457777777754
No 167
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=33.98 E-value=1.5e+02 Score=23.60 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=40.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCC--------ceEEEEEcCC
Q 016290 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQ--------AKLVIVKGVG 66 (392)
Q Consensus 14 V~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~--------v~~Vvl~g~G 66 (392)
+.++..+++.+++++.| |+..-...+.+.+..+..... ++.|||.-++
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45788999999999987 888889999999988877665 7899997665
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=32.48 E-value=2.2e+02 Score=22.23 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=33.5
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC
Q 016290 15 LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66 (392)
Q Consensus 15 ~~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G 66 (392)
.++..+++.+++++.| |+-.-..++.+.+..+-..+..+.|+|.-++
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4678899999999776 5556666666676665433457889997665
No 169
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=29.98 E-value=5.5e+02 Score=25.32 Aligned_cols=159 Identities=13% Similarity=0.251 Sum_probs=93.4
Q ss_pred cch--HHHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC----ChhhHHH
Q 016290 161 LPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL----DGQSVLN 234 (392)
Q Consensus 161 l~G--~~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~ 234 (392)
+-| ..|..|+.-|+...+.=. ...+++++..+...++.+...+++.++.++++|...... ...+...
T Consensus 9 lsg~qKAAilLl~lGee~aa~vl-------k~L~~~ei~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~ 81 (338)
T TIGR00207 9 LTGKQKAAILLISIGEDRSAEVF-------KHLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIAEAQAYINIGGLDY 81 (338)
T ss_pred cChHhHHHHHHHHhCcHhHHHHH-------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCccCChHHH
Confidence 456 456666677776655432 234667888888889888889999999999999765321 1223334
Q ss_pred HHHHHHHHhCcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHhhcCchHHHHHHHHHHHhhhcC----HHHHHHH
Q 016290 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGW-------IGPVLKGLKKSSPTGLKITLRSVREGREQS----LAECLKK 303 (392)
Q Consensus 235 ~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~-------a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~----l~~~l~~ 303 (392)
....++++|+.+...+|++.+....... ..| ...++.-|..-+|...++.+..+....... +.+....
T Consensus 82 ~~~~L~~alg~~~a~~il~~i~~~~~~~-~~~~~L~~~~~~~la~~l~~EhPQ~iAliLs~L~p~~AA~VL~~Lp~~~~~ 160 (338)
T TIGR00207 82 AREVLEKALGEEKAASILNDLTSSLQTA-PGFEFLRKAEPQQIADFIQQEHPQTIALILSHLDPAQAADILSLFPEEVQA 160 (338)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcccccC-chhHHHHCCCHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHHhCCHHHHH
Confidence 4677888898888888888776532111 012 344455556667777777766666433322 2332333
Q ss_pred HHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 304 EFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 304 E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
|.-.-..-+. .++++..+-+...|
T Consensus 161 ei~~ria~l~-~vs~~~i~~ie~~L 184 (338)
T TIGR00207 161 EVARRIATMG-RTSPEVVAEVERVL 184 (338)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 2222222222 24577666654444
No 170
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=27.93 E-value=1.7e+02 Score=28.73 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEc
Q 016290 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKG 64 (392)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g 64 (392)
--++++.+.+|.+.+++.-+++++..|||+.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 3589999999999998865556666666653
No 171
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=26.62 E-value=1.1e+02 Score=25.65 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hhCCCceEEEEEcCC
Q 016290 22 VRLVTLNRPRQLNVI--S----------SKVVSLLAEYLEKW--EKDDQAKLVIVKGVG 66 (392)
Q Consensus 22 v~~itLnrp~~lNal--~----------~~m~~~L~~~l~~~--~~d~~v~~Vvl~g~G 66 (392)
+..|+.+-|+|...= + .....++.+.+.+. ...+.++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 456777778887642 2 35667777777777 666789999999976
No 172
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=25.92 E-value=2.5e+02 Score=27.71 Aligned_cols=159 Identities=16% Similarity=0.307 Sum_probs=89.5
Q ss_pred hcch-H-HHHHHhhcCCcccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC----CChhhHH
Q 016290 160 RLPG-H-LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ----LDGQSVL 233 (392)
Q Consensus 160 rl~G-~-~a~~L~ltG~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~ 233 (392)
.+.| + .|..|..-|....+.=. ...|+++...+..+++.+...+++.++.++++|..... .......
T Consensus 11 ~lsg~qkaAilL~~Lg~e~Aa~VL-------~~L~~~e~~~l~~~ma~l~~vs~~~~~~vL~ef~~~~~~~~~~~~gg~~ 83 (339)
T PRK05686 11 ELTGPEKAAILLLALGEEAAAKVL-------KHLTEEEVQKLSAAMANLRNVSPEQVEAVLEEFEDEFEAGAYILMGGID 83 (339)
T ss_pred cCCHHHHHHHHHHHcCcHHHHHHH-------HcCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcccccCChHH
Confidence 4566 3 45556566665544422 34577788888899999988889999999988876532 1223334
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHhhcCchHHHHHHHHHHHhhhc----CHHHHHH
Q 016290 234 NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGW-------IGPVLKGLKKSSPTGLKITLRSVREGREQ----SLAECLK 302 (392)
Q Consensus 234 ~~~~~i~~~f~~~~~eei~~~l~~~~~~~~~~~-------a~~~~~~l~~~sp~sl~~tk~~l~~~~~~----~l~~~l~ 302 (392)
.....+++.++.+..+.|++.+..... ..-| .+.++.-|..-+|..+++.+..+...... .+.+-++
T Consensus 84 ~~~~iL~~~l~~~~a~~il~~i~~~~~--~~~fe~L~~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~vL~~l~~~~~ 161 (339)
T PRK05686 84 YARSLLEKALGEEKADSILERILESLG--TSGFDFLRKMDPQQLANFIRNEHPQTIALILSYLKPDQAAEILSLLPEELR 161 (339)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHhcccc--CchHHHHhcCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHHHHhCCHHHH
Confidence 456677888888888888888775221 1111 12233344445666666665555533222 2222222
Q ss_pred HHHHHHHHHHHcCCccHHHHHHHHHH
Q 016290 303 KEFRLTINILRAIISADIYEGIRALT 328 (392)
Q Consensus 303 ~E~~~~~~~~~~~~~~d~~eGv~a~l 328 (392)
.|...-...+. .++++..+-+...|
T Consensus 162 ~~v~~ria~l~-~v~~~~~~~i~~~L 186 (339)
T PRK05686 162 ADVMMRIATLE-GVSPEALKEVEEVL 186 (339)
T ss_pred HHHHHHHHccC-CCCHHHHHHHHHHH
Confidence 22222222222 24577777775555
No 173
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=25.73 E-value=1.6e+02 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=35.0
Q ss_pred cCCchhHHHHhhcch-HHHHHHh-hcC--CcccHHHHHHcCccceecCCCChHHHHHHHH
Q 016290 149 HTDCGFSFIHSRLPG-HLGEFLA-LTG--ARLNGKELVAAGLATHFVPSEKLPELEKRLI 204 (392)
Q Consensus 149 ~P~~G~s~~L~rl~G-~~a~~L~-ltG--~~l~a~eA~~~GLv~~vv~~~~l~~~~~~l~ 204 (392)
.||+-|.-+|+.+.. ...-..+ .|. +.=+-.+|+++|.+|..+.+=.++.+..+|.
T Consensus 56 mPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~ 115 (224)
T COG4565 56 MPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALT 115 (224)
T ss_pred cCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHH
Confidence 566666666665543 2222222 222 1223489999999999998877777666664
No 174
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=25.45 E-value=3.9e+02 Score=22.04 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCHHHHhcccCCCCC
Q 016290 319 DIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE 359 (392)
Q Consensus 319 d~~eGv~a~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~ 359 (392)
+...-.+..+ ++|-| |++.+-.||+.+++.++|.|-+.
T Consensus 42 ~V~~~~~~~i--~gRYP-F~~~s~~dv~l~Df~~fF~p~G~ 79 (125)
T PF06744_consen 42 EVYPFCRQAI--AGRYP-FDPDSSRDVSLADFARFFGPGGV 79 (125)
T ss_pred HHHHHHHHHh--cCCCC-CCCCCcccCCHHHHHHHhcCCCc
Confidence 4444445555 23555 56677799999999999999854
No 175
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=24.84 E-value=1.9e+02 Score=21.81 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=31.0
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-Ccccc
Q 016290 16 GEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSA 71 (392)
Q Consensus 16 ~~~~~~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G-~~Fca 71 (392)
....+++.++.+..+ ++.-+ ...+.+.+.....++ .+.|+|...+ +.+.+
T Consensus 3 ~~~~~~~~ii~l~G~--l~~~~---~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs 53 (99)
T cd07043 3 VEERGGVLVVRLSGE--LDAAT---APELREALEELLAEG-PRRLVLDLSGVTFIDS 53 (99)
T ss_pred eEEECCEEEEEEece--ecccc---hHHHHHHHHHHHHcC-CCEEEEECCCCCEEcc
Confidence 455678889998765 34444 455666555554443 6788897766 44433
No 176
>PRK14053 methyltransferase; Provisional
Probab=24.20 E-value=84 Score=28.25 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=45.2
Q ss_pred EEEEeCCEEEEEEcCCCC---CCCCCHHHHH---HHHHHHHHHhhCCCceEEEEEcCC-CccccCCCchhhcc
Q 016290 15 LGEEIGNVRLVTLNRPRQ---LNVISSKVVS---LLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYD 80 (392)
Q Consensus 15 ~~~~~~~v~~itLnrp~~---lNal~~~m~~---~L~~~l~~~~~d~~v~~Vvl~g~G-~~FcaG~Dl~~l~~ 80 (392)
.-+.+..|+++||...-. .=|+.-.... -+...+..+-.||++|.+||.|.- +..-+|--|..|++
T Consensus 17 vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~ 89 (194)
T PRK14053 17 VGNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHA 89 (194)
T ss_pred eCCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHH
Confidence 334566899999975321 1122222221 255667777789999999999998 88888888888775
No 177
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=23.74 E-value=97 Score=29.01 Aligned_cols=144 Identities=11% Similarity=0.025 Sum_probs=81.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceE--EEEEcCCCccccCCCchhhccCCCCchh---HHHHHHHHHHHHHHHHhcCC
Q 016290 33 LNVISSKVVSLLAEYLEKWEKDDQAKL--VIVKGVGRAFSAGGDLKMFYDGRNSKDS---CLEVVYRMYWLCHHIHTYKK 107 (392)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~--Vvl~g~G~~FcaG~Dl~~l~~~~~~~~~---~~~~~~~~~~l~~~i~~~~k 107 (392)
...++.+.-..|.+++.+.-++..-+- +|+...|..++ ..++ +..++...-..+..-..-.-
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g-------------rreEllGi~~alAhla~a~a~AR~~GH 106 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG-------------RREELLGINQALAHLAKAYALARLAGH 106 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc-------------hHHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence 478898888888877766543333233 33333332221 1111 13444444455555567789
Q ss_pred eEEEEecCceecccc-cccccCceEEEeCCeeeeccccccCccCCchhHHHHhhcchHHHHHHhhcCCc--ccHHHHHHc
Q 016290 108 TQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR--LNGKELVAA 184 (392)
Q Consensus 108 P~IA~v~G~a~GgG~-~lal~~d~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G~~a~~L~ltG~~--l~a~eA~~~ 184 (392)
|+|+++-|.+|+||| .-.+.+|- .+++|++.+-..+--.++ +..+++=..-..|.-|--. .+.+--..+
T Consensus 107 pvI~Lv~G~A~SGaFLA~GlqA~r-------l~AL~ga~i~vM~~~s~A-RVTk~~ve~Le~la~s~PvfA~gi~ny~~l 178 (234)
T PF06833_consen 107 PVIGLVYGKAMSGAFLAHGLQANR-------LIALPGAMIHVMGKPSAA-RVTKRPVEELEELAKSVPVFAPGIENYAKL 178 (234)
T ss_pred CeEEEEecccccHHHHHHHHHhcc-------hhcCCCCeeecCChHHhH-HHhhcCHHHHHHHhhcCCCcCCCHHHHHHh
Confidence 999999999999997 34555544 455565655554433333 3444433333444444333 334556678
Q ss_pred CccceecCCCChH
Q 016290 185 GLATHFVPSEKLP 197 (392)
Q Consensus 185 GLv~~vv~~~~l~ 197 (392)
|.++++++.+.-+
T Consensus 179 G~l~~l~~~~~~~ 191 (234)
T PF06833_consen 179 GALDELWDGDLAD 191 (234)
T ss_pred ccHHHHhcccccc
Confidence 8888888754433
No 178
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=22.64 E-value=2.8e+02 Score=30.26 Aligned_cols=97 Identities=12% Similarity=0.185 Sum_probs=54.7
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC----CccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 21 NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG----RAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 21 ~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G----~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
-++.|.|..|-+ .+..++++++.+ -.+++++|||.. ++.+.-..+..++....+++. .+
T Consensus 432 ~lG~i~l~Dp~R---------~~a~e~I~~Lr~-~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK-~~------ 494 (673)
T PRK14010 432 ILGVIYLKDVIK---------DGLVERFRELRE-MGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDK-IN------ 494 (673)
T ss_pred EEEEEEeecCCc---------HHHHHHHHHHHH-CCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHH-HH------
Confidence 367788877765 455666776654 479999999976 334433333333332221211 22
Q ss_pred HHHHHHHhcCCeEEEEe-------------c-Cceecccccccc-cCceEEEeCC
Q 016290 97 WLCHHIHTYKKTQVALA-------------H-GITMGGGASLMV-PLKFSVVTEK 136 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v-------------~-G~a~GgG~~lal-~~d~riate~ 136 (392)
+...+..-.+ +||.+ | |++||.|..++- ++|+++..++
T Consensus 495 -iV~~lQ~~G~-~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ 547 (673)
T PRK14010 495 -VIREEQAKGH-IVAMTGDGTNDAPALAEANVGLAMNSGTMSAKEAANLIDLDSN 547 (673)
T ss_pred -HHHHHHhCCC-EEEEECCChhhHHHHHhCCEEEEeCCCCHHHHHhCCEEEcCCC
Confidence 3333333333 33332 2 778888887776 5677776554
No 179
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.52 E-value=1.3e+02 Score=30.54 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=41.4
Q ss_pred eEEEeCCeeeeccccccCccCCchhHHHHhhcch--HHHHHHhhcCCcccHHHHHH
Q 016290 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVA 183 (392)
Q Consensus 130 ~riate~a~f~~PE~~iGl~P~~G~s~~L~rl~G--~~a~~L~ltG~~l~a~eA~~ 183 (392)
+|||||.. +.+-+.+|++-|.|+-+-=..--| +.-..|++-|..=.+..|++
T Consensus 43 lrVaTE~~--~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alE 96 (467)
T KOG0960|consen 43 LRVATEHN--SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALE 96 (467)
T ss_pred cEEEeccC--CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHH
Confidence 69999988 888899999999988766666666 45667788888777777776
No 180
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=22.22 E-value=6.5e+02 Score=24.47 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=71.4
Q ss_pred CCCCCcEEEEEeCCE--EEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhhCCCceEEEEEcCC-CccccCCC--------c
Q 016290 8 NPDEQVVLGEEIGNV--RLVTLNRPRQLNVISSKVVSLLAEYL-EKWEKDDQAKLVIVKGVG-RAFSAGGD--------L 75 (392)
Q Consensus 8 ~~~~~~V~~~~~~~v--~~itLnrp~~lNal~~~m~~~L~~~l-~~~~~d~~v~~Vvl~g~G-~~FcaG~D--------l 75 (392)
...++.|.+-.++++ +-=.|.-+-.+|.++++-+.+-...+ .++...+.-++.||-|.. +.|-=+-+ +
T Consensus 95 ~~~FDlvi~p~HD~~~~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l 174 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLPRGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQL 174 (311)
T ss_pred ccccCEEEECcccCcCCCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHH
Confidence 455667777666655 11111122246999999888866555 445555555666665543 66654433 1
Q ss_pred hhhccCCCCchhHHHHHHHHHHHHHHHHhc--CCeEEEEecCceecccccccccCceEEEeCCeeeeccccc
Q 016290 76 KMFYDGRNSKDSCLEVVYRMYWLCHHIHTY--KKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS 145 (392)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~--~kP~IA~v~G~a~GgG~~lal~~d~riate~a~f~~PE~~ 145 (392)
..+.......--+..--+.--.+...|... +.|.+.+.+|---+-=.++...||.+|+|+++.=.+.|.-
T Consensus 175 ~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~ 246 (311)
T PF06258_consen 175 AALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAA 246 (311)
T ss_pred HHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHH
Confidence 111111000000000000000111222222 3455555676666666788889999999999876666653
No 181
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.02 E-value=3e+02 Score=30.10 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=55.6
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC----CccccCCCchhhccCCCCchhHHHHHHHHH
Q 016290 21 NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG----RAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (392)
Q Consensus 21 ~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G----~~FcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (392)
-++.+.|..|-+ .+..++++.+.+ -.++++++||.. ++.+.-..+.++.....+.+. .+
T Consensus 436 ~lG~i~l~D~~R---------~~~~eai~~Lr~-~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK-~~------ 498 (679)
T PRK01122 436 VLGVIYLKDIVK---------PGIKERFAELRK-MGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDK-LA------ 498 (679)
T ss_pred EEEEEEEeccCc---------hhHHHHHHHHHH-CCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHH-HH------
Confidence 366778876655 345666666654 469999999976 333333333344332222221 22
Q ss_pred HHHHHHHhcCCeEEEEe-------------c-Cceecccccccc-cCceEEEeCC
Q 016290 97 WLCHHIHTYKKTQVALA-------------H-GITMGGGASLMV-PLKFSVVTEK 136 (392)
Q Consensus 97 ~l~~~i~~~~kP~IA~v-------------~-G~a~GgG~~lal-~~d~riate~ 136 (392)
+...+....+ +||.+ | |++||.|..++- ++|+++..++
T Consensus 499 -iV~~lQ~~G~-~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ 551 (679)
T PRK01122 499 -LIRQEQAEGR-LVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSN 551 (679)
T ss_pred -HHHHHHHcCC-eEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCC
Confidence 3333333333 34444 2 788888888777 6788877665
No 182
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=21.70 E-value=2.8e+02 Score=19.61 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHH
Q 016290 270 VLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEF 305 (392)
Q Consensus 270 ~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~ 305 (392)
+.+-+...|+.-++.++.....-...+|.+.++.|.
T Consensus 20 li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~ 55 (66)
T PF00191_consen 20 LIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKET 55 (66)
T ss_dssp HHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHS
T ss_pred hhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhC
Confidence 367788999999999999999888899999888764
No 183
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=21.15 E-value=6e+02 Score=28.00 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=60.7
Q ss_pred EEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCC----ccccCCCchhhccCCCCchhH
Q 016290 14 VLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGR----AFSAGGDLKMFYDGRNSKDSC 88 (392)
Q Consensus 14 V~~~~~~-~v~~itLnrp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~----~FcaG~Dl~~l~~~~~~~~~~ 88 (392)
|.+..+| -++.|.+..+-+-+ -.++++.+.+ -.++.++|||..+ ..-.-..+.+.+....+++.
T Consensus 520 v~va~dg~~~g~i~~~D~~R~~---------a~~aI~~L~~-~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellPedK- 588 (713)
T COG2217 520 VFVAVDGKLVGVIALADELRPD---------AKEAIAALKA-LGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDK- 588 (713)
T ss_pred EEEEECCEEEEEEEEeCCCChh---------HHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcChHhheccCCcHHH-
Confidence 5556666 47788886554422 2455555654 4789999999762 22222333444443332222
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEec-------------Cceecccccccc-cCceEEEeCC
Q 016290 89 LEVVYRMYWLCHHIHTYKKTQVALAH-------------GITMGGGASLMV-PLKFSVVTEK 136 (392)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~-------------G~a~GgG~~lal-~~d~riate~ 136 (392)
. +....+..-.++|.-.-| |++||.|..++. ++|++++.++
T Consensus 589 ~-------~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~d 643 (713)
T COG2217 589 A-------EIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDD 643 (713)
T ss_pred H-------HHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCC
Confidence 2 233334433444444444 558999998888 6788888774
No 184
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=20.73 E-value=1.8e+02 Score=29.79 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=43.8
Q ss_pred CceEEEEEcCCCccccCCCchhhccCCCC---chhHHHHHHHHHH-HHHHH------HhcCCe--EEEEecCceeccccc
Q 016290 56 QAKLVIVKGVGRAFSAGGDLKMFYDGRNS---KDSCLEVVYRMYW-LCHHI------HTYKKT--QVALAHGITMGGGAS 123 (392)
Q Consensus 56 ~v~~Vvl~g~G~~FcaG~Dl~~l~~~~~~---~~~~~~~~~~~~~-l~~~i------~~~~kP--~IA~v~G~a~GgG~~ 123 (392)
..-++++ -||.||||..+.+...+ .+...+|+..+.- ....| ++==|| |..-=+|+.|=.=+-
T Consensus 150 ~~~cl~m-----eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFD 224 (459)
T KOG0610|consen 150 KYSCLVM-----EYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFD 224 (459)
T ss_pred ceeEEEE-----ecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeecc
Confidence 3445555 58999999998763321 1222455544321 11222 233366 566668999999999
Q ss_pred ccccCceE
Q 016290 124 LMVPLKFS 131 (392)
Q Consensus 124 lal~~d~r 131 (392)
|++.|+.+
T Consensus 225 LS~~~~~~ 232 (459)
T KOG0610|consen 225 LSLRCPVS 232 (459)
T ss_pred ccccCCCC
Confidence 99999653
No 185
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=20.52 E-value=1.9e+02 Score=26.94 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCc
Q 016290 29 RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68 (392)
Q Consensus 29 rp~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~g~G~~ 68 (392)
.++....++.+.++.+.+.+.++. ..++|++.|.|..
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~~ 49 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSF 49 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCcc
Confidence 444456799999999999998875 5688999987743
No 186
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.51 E-value=54 Score=27.33 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHhccCCCCCCCCCCCCCCCHHHHhcccCCCCCC
Q 016290 327 LTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED 360 (392)
Q Consensus 327 ~l~dK~r~P~w~~~~l~~v~~~~v~~~f~p~~~~ 360 (392)
+|+=++.--.|++++++|.+.+..+..|++-+.-
T Consensus 37 lL~lpdgv~~W~v~~~~~Lt~e~f~~vl~~a~~~ 70 (127)
T COG3737 37 LLVLPDGVCDWEVATLSDLTPEDFERVLAEAPDV 70 (127)
T ss_pred EEEecCccccccccChhhCCHHHHHHHHhcCCCc
Confidence 3433444447999999999999999999988753
No 187
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=20.33 E-value=4.5e+02 Score=21.91 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHhcc
Q 016290 270 VLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (392)
Q Consensus 270 ~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~a~l~dK 331 (392)
+.+.|++.+|.-+..--..+.+... +....+.-..+..+.+..|.|...-.|.+||-.
T Consensus 28 L~~~L~~l~~~ei~~F~~~~~~~~~----~~~~~~lw~Aa~ii~gg~SdD~F~yFR~wLIs~ 85 (128)
T PF14024_consen 28 LVELLAKLPPEEIVAFDKILDQLLD----EAYTWDLWAAAYIINGGCSDDGFLYFRCWLISQ 85 (128)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHcCCCchhhHHHHHHHHHHc
Confidence 3357888888888666555554322 222233333334444444578888888888854
Done!