BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016291
         (392 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
           Ubiquitin-Protein Ligases
          Length = 154

 Score = 28.9 bits (63), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 148 FHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVR-ILYFIDNPGCESPIKVEM 197
           +HP+   +  VCLP+     + P T   +V++ ++  +++P  E P++ ++
Sbjct: 75  YHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 125


>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
           Nlel, With A Human E2, Ubch7
 pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
           Nlel, With A Human E2, Ubch7
 pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
           Sopa In Complex With The Human E2 Ubch7
 pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
           Sopa In Complex With The Human E2 Ubch7
          Length = 156

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 148 FHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVR-ILYFIDNPGCESPIKVEM 197
           +HP+   +  VCLP+     + P T   +V++ ++  +++P  E P++ ++
Sbjct: 77  YHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADL 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,633,609
Number of Sequences: 62578
Number of extensions: 470093
Number of successful extensions: 1029
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 6
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)