Query 016291
Match_columns 392
No_of_seqs 139 out of 1562
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 4.5E-34 9.7E-39 255.3 25.0 221 114-352 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 7.9E-16 1.7E-20 129.7 17.9 146 225-374 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 4.3E-15 9.3E-20 120.0 14.5 111 225-338 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 6.4E-13 1.4E-17 123.4 22.9 330 1-376 1-373 (373)
5 PF12937 F-box-like: F-box-lik 98.9 4.2E-10 9E-15 73.4 2.4 42 4-45 1-42 (47)
6 PF00646 F-box: F-box domain; 98.8 2.2E-09 4.7E-14 70.4 1.3 44 4-47 3-46 (48)
7 PHA02713 hypothetical protein; 98.7 1.6E-06 3.4E-11 87.3 21.4 217 114-363 299-546 (557)
8 smart00256 FBOX A Receptor for 98.7 4.3E-09 9.4E-14 66.4 1.4 39 7-45 1-39 (41)
9 KOG4441 Proteins containing BT 98.4 2.2E-05 4.8E-10 79.0 20.0 211 113-359 327-555 (571)
10 PHA03098 kelch-like protein; P 98.4 5E-05 1.1E-09 76.5 22.3 199 129-359 312-520 (534)
11 TIGR03547 muta_rot_YjhT mutatr 98.4 0.00019 4.2E-09 68.1 24.8 243 116-380 15-329 (346)
12 PHA02713 hypothetical protein; 98.4 6.3E-05 1.4E-09 75.8 22.4 221 129-380 273-520 (557)
13 PLN02193 nitrile-specifier pro 98.4 0.0001 2.2E-09 73.0 23.2 207 129-359 194-419 (470)
14 PLN02153 epithiospecifier prot 98.4 0.00018 3.8E-09 68.2 24.0 214 129-360 51-294 (341)
15 PRK14131 N-acetylneuraminic ac 98.3 0.00026 5.7E-09 68.0 23.6 245 114-380 34-351 (376)
16 KOG4441 Proteins containing BT 98.3 8.8E-05 1.9E-09 74.7 20.5 197 129-358 302-507 (571)
17 PHA02790 Kelch-like protein; P 98.3 0.00013 2.8E-09 72.4 21.1 184 129-357 288-477 (480)
18 TIGR03548 mutarot_permut cycli 98.2 0.00056 1.2E-08 64.3 22.8 176 192-380 87-311 (323)
19 PHA03098 kelch-like protein; P 98.1 0.00037 7.9E-09 70.3 20.8 221 129-381 265-496 (534)
20 PLN02193 nitrile-specifier pro 97.9 0.0051 1.1E-07 60.9 23.8 181 193-381 193-386 (470)
21 PLN02153 epithiospecifier prot 97.9 0.0041 8.8E-08 58.9 21.6 184 193-380 50-259 (341)
22 PHA02790 Kelch-like protein; P 97.5 0.0043 9.4E-08 61.6 16.7 167 192-380 286-454 (480)
23 PRK14131 N-acetylneuraminic ac 97.5 0.033 7.1E-07 53.5 21.5 157 193-355 189-373 (376)
24 KOG2120 SCF ubiquitin ligase, 97.5 4.1E-05 8.9E-10 68.4 1.2 39 4-42 98-136 (419)
25 TIGR03548 mutarot_permut cycli 97.4 0.012 2.6E-07 55.2 17.3 153 114-288 119-311 (323)
26 KOG4693 Uncharacterized conser 97.1 0.014 3.1E-07 51.4 12.2 211 129-361 45-287 (392)
27 KOG1230 Protein containing rep 97.0 0.012 2.5E-07 55.1 11.8 210 129-361 99-351 (521)
28 TIGR03547 muta_rot_YjhT mutatr 96.4 0.15 3.2E-06 48.3 15.7 139 128-289 168-330 (346)
29 KOG0281 Beta-TrCP (transducin 96.2 0.0024 5.3E-08 58.0 1.7 45 4-48 75-123 (499)
30 KOG0379 Kelch repeat-containin 96.1 0.7 1.5E-05 46.0 18.9 211 129-361 89-312 (482)
31 KOG2997 F-box protein FBX9 [Ge 96.1 0.0029 6.3E-08 57.0 1.6 46 4-49 107-157 (366)
32 KOG4693 Uncharacterized conser 96.0 0.19 4.1E-06 44.6 12.3 141 192-339 156-309 (392)
33 KOG0379 Kelch repeat-containin 95.2 2.4 5.3E-05 42.1 18.9 185 194-383 89-286 (482)
34 KOG0274 Cdc4 and related F-box 94.8 3.7 8E-05 41.3 18.8 43 4-46 108-150 (537)
35 PF07762 DUF1618: Protein of u 94.3 0.47 1E-05 38.0 9.3 74 246-319 7-98 (131)
36 PF02191 OLF: Olfactomedin-lik 93.7 2.3 5E-05 38.2 13.3 130 220-360 69-213 (250)
37 KOG1230 Protein containing rep 93.3 1.6 3.4E-05 41.4 11.8 137 194-338 99-248 (521)
38 PF13964 Kelch_6: Kelch motif 92.7 0.26 5.6E-06 31.9 4.4 39 223-261 5-44 (50)
39 PF13360 PQQ_2: PQQ-like domai 91.7 8 0.00017 33.9 14.3 139 194-357 4-147 (238)
40 smart00284 OLF Olfactomedin-li 91.5 7.2 0.00016 35.0 13.3 130 220-360 74-218 (255)
41 COG3055 Uncharacterized protei 91.0 5.7 0.00012 37.1 12.3 177 193-380 113-357 (381)
42 TIGR01640 F_box_assoc_1 F-box 90.4 9.3 0.0002 33.6 13.4 123 227-361 3-138 (230)
43 PF13964 Kelch_6: Kelch motif 89.4 0.7 1.5E-05 29.8 4.0 21 128-148 28-48 (50)
44 PF01344 Kelch_1: Kelch motif; 88.2 1.3 2.7E-05 28.0 4.5 39 223-261 5-44 (47)
45 PF07646 Kelch_2: Kelch motif; 88.1 1.4 3E-05 28.3 4.7 40 223-262 5-47 (49)
46 PRK11138 outer membrane biogen 87.8 13 0.00028 35.9 13.2 117 223-357 63-185 (394)
47 PF02897 Peptidase_S9_N: Proly 87.6 28 0.00061 33.7 18.2 117 227-358 285-412 (414)
48 KOG0310 Conserved WD40 repeat- 87.5 16 0.00035 35.4 12.9 166 192-388 47-223 (487)
49 PF10282 Lactonase: Lactonase, 87.2 27 0.00059 33.0 17.6 152 192-359 165-333 (345)
50 KOG4341 F-box protein containi 86.2 0.31 6.7E-06 46.2 0.9 39 4-42 72-110 (483)
51 PF13360 PQQ_2: PQQ-like domai 85.8 23 0.0005 30.9 18.2 194 117-357 35-237 (238)
52 COG4257 Vgb Streptogramin lyas 85.5 14 0.0003 33.5 10.7 125 110-265 191-317 (353)
53 PF10282 Lactonase: Lactonase, 84.1 38 0.00083 31.9 14.9 118 229-360 154-287 (345)
54 PF07893 DUF1668: Protein of u 83.4 40 0.00087 31.9 13.8 132 113-264 71-221 (342)
55 PRK11138 outer membrane biogen 82.8 36 0.00079 32.7 13.7 108 223-356 250-359 (394)
56 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.6 34 0.00074 34.5 13.7 120 223-357 63-196 (527)
57 TIGR03300 assembly_YfgL outer 82.4 30 0.00065 32.9 13.0 110 223-356 59-169 (377)
58 PF06433 Me-amine-dh_H: Methyl 80.4 39 0.00083 31.8 12.0 121 224-356 188-326 (342)
59 TIGR03300 assembly_YfgL outer 76.7 52 0.0011 31.3 12.5 112 224-356 100-214 (377)
60 COG4946 Uncharacterized protei 76.5 35 0.00076 33.3 10.6 21 338-358 378-398 (668)
61 smart00564 PQQ beta-propeller 75.5 9.8 0.00021 21.6 4.6 25 332-356 6-30 (33)
62 PF13418 Kelch_4: Galactose ox 74.5 5.2 0.00011 25.4 3.5 19 129-147 30-48 (49)
63 PF01011 PQQ: PQQ enzyme repea 74.2 8.2 0.00018 23.2 4.1 26 334-359 2-27 (38)
64 PF01344 Kelch_1: Kelch motif; 73.7 3.7 8.1E-05 25.7 2.6 19 129-147 29-47 (47)
65 TIGR03074 PQQ_membr_DH membran 71.7 84 0.0018 33.3 13.2 29 222-256 187-215 (764)
66 PF08450 SGL: SMP-30/Gluconola 71.6 72 0.0016 28.2 23.6 206 113-361 6-224 (246)
67 PF07893 DUF1668: Protein of u 68.4 98 0.0021 29.3 11.9 107 246-358 87-215 (342)
68 KOG2055 WD40 repeat protein [G 68.3 65 0.0014 31.3 10.3 102 244-358 279-382 (514)
69 COG2706 3-carboxymuconate cycl 67.9 1.1E+02 0.0023 28.8 14.9 118 229-360 155-286 (346)
70 PLN02772 guanylate kinase 66.7 40 0.00086 32.5 8.8 76 223-305 28-108 (398)
71 COG1520 FOG: WD40-like repeat 65.4 1.3E+02 0.0027 28.6 14.1 141 193-357 35-178 (370)
72 cd01206 Homer Homer type EVH1 61.1 20 0.00043 27.5 4.5 39 129-181 12-51 (111)
73 smart00612 Kelch Kelch domain. 59.8 33 0.00072 20.8 5.0 17 245-261 15-31 (47)
74 PF08450 SGL: SMP-30/Gluconola 58.3 1.3E+02 0.0028 26.5 14.1 106 229-357 11-129 (246)
75 PF13570 PQQ_3: PQQ-like domai 58.0 17 0.00036 22.0 3.2 26 223-254 15-40 (40)
76 cd01207 Ena-Vasp Enabled-VASP- 57.6 23 0.0005 27.4 4.5 42 129-181 10-51 (111)
77 PRK11028 6-phosphogluconolacto 57.5 1.6E+02 0.0035 27.2 14.6 120 229-359 185-315 (330)
78 KOG2502 Tub family proteins [G 57.1 7.4 0.00016 36.2 2.0 38 3-40 44-89 (355)
79 COG3386 Gluconolactonase [Carb 57.1 1.7E+02 0.0036 27.3 12.3 31 230-265 37-67 (307)
80 cd00216 PQQ_DH Dehydrogenases 55.6 1.9E+02 0.004 28.9 11.9 29 222-256 54-82 (488)
81 PF03088 Str_synth: Strictosid 53.2 29 0.00063 25.6 4.3 18 341-358 36-53 (89)
82 PF13415 Kelch_3: Galactose ox 53.1 27 0.00058 22.1 3.7 16 245-260 19-34 (49)
83 KOG4152 Host cell transcriptio 52.3 2.5E+02 0.0055 28.0 13.6 18 343-360 295-312 (830)
84 KOG2106 Uncharacterized conser 52.3 2.5E+02 0.0054 27.9 19.6 70 293-373 388-457 (626)
85 PF13013 F-box-like_2: F-box-l 49.2 8.5 0.00019 29.6 1.0 29 4-32 22-50 (109)
86 TIGR03866 PQQ_ABC_repeats PQQ- 46.6 2.1E+02 0.0045 25.4 15.0 120 229-362 167-292 (300)
87 COG4946 Uncharacterized protei 46.0 3.1E+02 0.0067 27.1 11.3 143 194-358 288-439 (668)
88 KOG0293 WD40 repeat-containing 45.2 3E+02 0.0064 26.7 13.5 100 246-361 377-481 (519)
89 PF07861 WND: WisP family N-Te 45.1 83 0.0018 26.6 6.2 34 109-142 31-64 (263)
90 KOG0315 G-protein beta subunit 44.9 2.3E+02 0.0051 25.4 18.9 110 245-365 146-260 (311)
91 KOG3545 Olfactomedin and relat 41.6 2.6E+02 0.0056 25.0 10.5 130 220-360 68-212 (249)
92 PF07250 Glyoxal_oxid_N: Glyox 39.9 2.8E+02 0.006 24.8 11.7 171 192-377 45-223 (243)
93 KOG1963 WD40 repeat protein [G 37.5 4E+02 0.0086 28.2 10.8 60 293-352 477-540 (792)
94 PF08268 FBA_3: F-box associat 36.7 1.1E+02 0.0025 23.9 5.8 51 332-382 5-64 (129)
95 KOG1920 IkappaB kinase complex 35.0 6.8E+02 0.015 27.9 15.1 69 245-320 266-335 (1265)
96 PF00930 DPPIV_N: Dipeptidyl p 34.0 4E+02 0.0088 25.0 11.9 113 244-358 157-276 (353)
97 PRK04792 tolB translocation pr 33.7 4.7E+02 0.01 25.7 22.0 187 129-359 243-434 (448)
98 PF15408 PH_7: Pleckstrin homo 33.2 16 0.00035 26.5 0.3 23 22-44 77-99 (104)
99 KOG0639 Transducin-like enhanc 32.4 4.6E+02 0.0099 26.2 9.7 152 176-353 420-584 (705)
100 PF15525 DUF4652: Domain of un 31.6 3.1E+02 0.0067 23.5 7.5 21 340-360 138-158 (200)
101 KOG2055 WD40 repeat protein [G 30.3 3E+02 0.0064 27.0 8.1 84 294-381 234-323 (514)
102 KOG1912 WD40 repeat protein [G 29.5 7.1E+02 0.015 26.5 12.6 53 246-305 253-306 (1062)
103 PRK04043 tolB translocation pr 28.6 5.6E+02 0.012 25.0 12.5 101 245-359 213-318 (419)
104 PF05096 Glu_cyclase_2: Glutam 25.9 5E+02 0.011 23.5 14.3 110 228-358 54-166 (264)
105 KOG0286 G-protein beta subunit 25.7 5.4E+02 0.012 23.8 11.7 104 242-357 74-181 (343)
106 PF06977 SdiA-regulated: SdiA- 25.5 4.9E+02 0.011 23.3 9.3 61 222-287 172-239 (248)
107 PRK05137 tolB translocation pr 24.6 6.5E+02 0.014 24.4 21.6 188 128-359 226-421 (435)
108 KOG0265 U5 snRNP-specific prot 24.0 3.2E+02 0.007 25.3 6.8 56 293-355 67-125 (338)
109 PF14583 Pectate_lyase22: Olig 23.3 1.6E+02 0.0034 28.3 5.0 109 242-358 165-280 (386)
110 PLN00181 protein SPA1-RELATED; 22.7 9.5E+02 0.02 25.6 22.7 100 245-352 640-740 (793)
111 COG4257 Vgb Streptogramin lyas 22.6 6.1E+02 0.013 23.4 17.1 230 110-360 64-315 (353)
112 KOG0649 WD40 repeat protein [G 22.6 4.1E+02 0.0089 23.9 7.0 94 293-386 79-180 (325)
113 KOG2437 Muskelin [Signal trans 22.1 1.8E+02 0.0039 28.9 5.1 123 130-262 231-363 (723)
114 KOG0279 G protein beta subunit 22.1 3.1E+02 0.0067 25.1 6.3 99 246-360 173-273 (315)
115 PF14339 DUF4394: Domain of un 22.0 2.1E+02 0.0045 25.5 5.2 55 116-179 36-92 (236)
116 KOG0647 mRNA export protein (c 21.4 4.8E+02 0.01 24.2 7.3 62 294-363 49-115 (347)
117 KOG3926 F-box proteins [Amino 21.2 76 0.0016 28.7 2.3 39 4-42 202-241 (332)
118 COG0823 TolB Periplasmic compo 21.1 3.8E+02 0.0083 26.2 7.4 102 245-360 218-324 (425)
119 PF02393 US22: US22 like; Int 21.1 1.5E+02 0.0032 23.0 3.9 26 333-358 82-107 (125)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=4.5e-34 Score=255.25 Aligned_cols=221 Identities=25% Similarity=0.402 Sum_probs=162.4
Q ss_pred EeeccceEEEEEcCceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCc
Q 016291 114 FGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPI 193 (392)
Q Consensus 114 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~ 193 (392)
++|||||||+... ..++||||+||+++.||+++. +. ..... ..++||||+.+++||||++...... ....
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~-~~--~~~~~---~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~ 70 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKS-RR--SNKES---DTYFLGYDPIEKQYKVLCFSDRSGN---RNQS 70 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCC-cc--ccccc---ceEEEeecccCCcEEEEEEEeecCC---CCCc
Confidence 4799999998876 589999999999999997654 11 01011 3578999999999999999632211 1356
Q ss_pred EEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccCCC
Q 016291 194 KVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNARKD 272 (392)
Q Consensus 194 ~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~ 272 (392)
.++||++++++||.+....+.. .....+|++||++||++..........|++||+++|+|+ .+++|..... ...
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~----~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~-~~~ 145 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHH----PLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD-SVD 145 (230)
T ss_pred cEEEEEeCCCCccccccCCCCc----cccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc-ccc
Confidence 8999999999999987322211 222349999999999997542122238999999999999 5999874321 112
Q ss_pred CceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC--CCc---ccceEEecCCeEEEEeCC--Ce-E
Q 016291 273 SRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN--SRL---QKPLVFWKSDELVMEDKT--GK-F 344 (392)
Q Consensus 273 ~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~--~~~---~~p~~~~~~~~il~~~~~--~~-~ 344 (392)
...|++++|+||++.... ....++||+|++++. ..|+|+++|+.. ..+ ..|.++.++|+|++.... +. +
T Consensus 146 ~~~L~~~~G~L~~v~~~~--~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~ 222 (230)
T TIGR01640 146 YLSLINYKGKLAVLKQKK--DTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYI 222 (230)
T ss_pred ceEEEEECCEEEEEEecC--CCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEE
Confidence 247899999999997653 235699999998863 569999999842 112 247888888999997754 44 9
Q ss_pred EEEECCCC
Q 016291 345 CRYNLRTG 352 (392)
Q Consensus 345 ~~ydl~t~ 352 (392)
+.||++++
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 99999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.71 E-value=7.9e-16 Score=129.66 Aligned_cols=146 Identities=26% Similarity=0.469 Sum_probs=99.9
Q ss_pred CeEECceEEEEeecCCCCCceEEEEEEcCCceE-eEEcCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEE
Q 016291 225 SLYFNRAFHWMAWGDFHESDSFILSFDISDETF-KKIAGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIM 302 (392)
Q Consensus 225 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l 302 (392)
+|++||++||++..........|++||+++|+| ..+++|..... ......| +..+|+||++.... ....++||+|
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~-~~~~~~L~~v~~~~L~~~~~~~--~~~~~~IWvm 77 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD-DDDSVSLSVVRGDCLCVLYQCD--ETSKIEIWVM 77 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc-cCCEEEEEEecCCEEEEEEecc--CCccEEEEEE
Confidence 589999999999876433333799999999999 88999986431 1222366 34578999996532 3557999999
Q ss_pred eeeC-CCCceeEEEEeeCCCCc-------ccceEEecCCeEEEEeC-C------CeEEEEECCCCCEEEeeecccc-cee
Q 016291 303 DEVG-VKAKWKKLLTIEGNSRL-------QKPLVFWKSDELVMEDK-T------GKFCRYNLRTGEIKDLPVRRRL-RKY 366 (392)
Q Consensus 303 ~~~~-~~~~W~~~~~i~~~~~~-------~~p~~~~~~~~il~~~~-~------~~~~~ydl~t~~~~~v~~~~~~-~~~ 366 (392)
++++ +.++|+|.++|+..... ...+.+..++++++... . ..++.|+ +++..+++.+.... .+.
T Consensus 78 ~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~ 156 (164)
T PF07734_consen 78 KKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWP 156 (164)
T ss_pred eeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCC
Confidence 9764 27899999999854221 12233445556666432 1 3467777 77788888774322 334
Q ss_pred eEEEEecc
Q 016291 367 SAVNYLSS 374 (392)
Q Consensus 367 ~~~~y~~s 374 (392)
.+..|+||
T Consensus 157 ~~~~YvpS 164 (164)
T PF07734_consen 157 SICNYVPS 164 (164)
T ss_pred CEEEECCC
Confidence 68899887
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=4.3e-15 Score=120.02 Aligned_cols=111 Identities=23% Similarity=0.431 Sum_probs=82.4
Q ss_pred CeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEee
Q 016291 225 SLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDE 304 (392)
Q Consensus 225 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~ 304 (392)
++++||++||++.. .......|++||+++|+|+.|++|.... .......|.+++|+||++..........++||+|+|
T Consensus 1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPY-SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeec-cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 58999999999987 2345679999999999999999992111 123334999999999999776421235799999999
Q ss_pred eCCCCceeEEEEeeCCC--C-----cccceEEecCCeEEEE
Q 016291 305 VGVKAKWKKLLTIEGNS--R-----LQKPLVFWKSDELVME 338 (392)
Q Consensus 305 ~~~~~~W~~~~~i~~~~--~-----~~~p~~~~~~~~il~~ 338 (392)
++ +++|++.+.+-+.. . ...+.++.++|+|+|.
T Consensus 79 ~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 86 68999987643321 1 2356677778888887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.58 E-value=6.4e-13 Score=123.35 Aligned_cols=330 Identities=13% Similarity=0.107 Sum_probs=165.5
Q ss_pred CCCCCCCcHHHHHHHHhcCC-ccccccccccchhhhhhhCChHHHHHHhhcccccCCCCcceEEEeeccCCCcceeeeee
Q 016291 1 MARFSDLPEELVVEILAYLP-ADSLMRFKCVQKSWYSLIAKPKFVVKQLCNQIYNKSGLLLKCRLFNDCGNEESILSFLS 79 (392)
Q Consensus 1 m~~~~~LP~Dll~~IL~rLP-~~sl~r~r~VCK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (392)
|+.|++||+|||..|..||| ..+++|||+|||+||+.+....= ..++.. . +.+++.+...... +..
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~~~~--------~-~~~~~~~~~~~~~---~~~ 67 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNPFRT--------R-PLILFNPINPSET---LTD 67 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCCccc--------c-cccccCcccCCCC---ccc
Confidence 89999999999999999998 77999999999999998774210 000010 1 1111221100000 000
Q ss_pred ecCCcccccccCcccccccccccCCCCCCCCccEEeeccceEEEEEcC---ceEEEEcCcccccccCCCCCCCCCCCCCc
Q 016291 80 FDKNTEMLHSEDHVYAVDEVIHFPFYKDRLLYPFFGHCHGIVCISLRY---VKVILCNSATREFRELPVSCFHPSPGSEE 156 (392)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~GLl~~~~~~---~~~~V~NP~T~~~~~LP~~~~~p~~~~~~ 156 (392)
.+.. +......-....-+.++ ...++..|+|.-.... +.+.+.||.++....+|+-..+ -.+.
T Consensus 68 --~~~~-~~~~~~~ls~~~~~r~~--------~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~ln---ll~f 133 (373)
T PLN03215 68 --DRSY-ISRPGAFLSRAAFFRVT--------LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVD---LLEF 133 (373)
T ss_pred --cccc-cccccceeeeeEEEEee--------cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccce---eeee
Confidence 0000 00000000000000000 0013568988766533 5899999999998887743221 0010
Q ss_pred eee-ccceeeE-eeeCC---CCCeEEEEE-EEecCCCCCCCCcEEEEEeCC------CCceeEeeecccccceecccccc
Q 016291 157 VVC-LPLGFGF-GYDPK---TNDYKVVRI-LYFIDNPGCESPIKVEMYTLS------TDSWRKVNINLFAAGICFLQRLE 224 (392)
Q Consensus 157 ~~~-~~~~~~l-~~d~~---~~~ykvv~~-~~~~~~~~~~~~~~~~vyss~------~~~Wr~~~~~~~~~~~~~~~~~~ 224 (392)
.+. ....+.+ +.+.. ...|+-+.+ .....++. ..--+.|+..+ .++|..++.. . .....
T Consensus 134 ~v~ei~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~i~~~g~l~~w~~~~Wt~l~~~---~----~~~~D 204 (373)
T PLN03215 134 TVSEIREAYQVLDWAKRRETRPGYQRSALVKVKEGDNH--RDGVLGIGRDGKINYWDGNVLKALKQM---G----YHFSD 204 (373)
T ss_pred EEEEccceEEEEecccccccccceeEEEEEEeecCCCc--ceEEEEEeecCcEeeecCCeeeEccCC---C----ceeeE
Confidence 110 0011111 11100 011311111 11111000 00122222211 3677776521 1 23456
Q ss_pred CeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCC--ccc-ccCCCCceEEEeCCeEEEEEecC-CC--------
Q 016291 225 SLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPS--STL-NARKDSRELIVLNESLAFVLHDA-SA-------- 292 (392)
Q Consensus 225 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~--~~~-~~~~~~~~L~~~~g~L~l~~~~~-~~-------- 292 (392)
.|+++|.+|-+...+ .+.++|..-+ ...+..+- ... ........|++..|+|.+|.... ..
T Consensus 205 Ii~~kGkfYAvD~~G------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~ 277 (373)
T PLN03215 205 IIVHKGQTYALDSIG------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADG 277 (373)
T ss_pred EEEECCEEEEEcCCC------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCccccccccc
Confidence 799999999996655 6777774321 22222111 000 00112347999999999994421 00
Q ss_pred ----CCCeEEEEEEeeeCCCCceeEEEEeeCCCC---cccceEEe-------cCCeEEEEeCCCeEEEEECCCCCEEEee
Q 016291 293 ----VQSLMEIWIMDEVGVKAKWKKLLTIEGNSR---LQKPLVFW-------KSDELVMEDKTGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 293 ----~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~---~~~p~~~~-------~~~~il~~~~~~~~~~ydl~t~~~~~v~ 358 (392)
....++|+.++.. ...|+++.+++-... ....+++. ..+-|+|. .+....+||++.+++..+-
T Consensus 278 ~~~~~t~~f~VfklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 278 FEYSRTVGFKVYKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred ccccceeEEEEEEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceE
Confidence 1246899988753 478999998873211 11222222 22345555 5777999999999977664
Q ss_pred ec-cccceeeEEEEeccee
Q 016291 359 VR-RRLRKYSAVNYLSSLV 376 (392)
Q Consensus 359 ~~-~~~~~~~~~~y~~sl~ 376 (392)
.. .+....++-+|.+|++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~ 373 (373)
T PLN03215 355 TTISESSQSSFEMFVPSFL 373 (373)
T ss_pred eecCccccchheeeccccC
Confidence 43 2223336778888764
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.95 E-value=4.2e-10 Score=73.44 Aligned_cols=42 Identities=29% Similarity=0.611 Sum_probs=36.4
Q ss_pred CCCCcHHHHHHHHhcCCccccccccccchhhhhhhCChHHHH
Q 016291 4 FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVV 45 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~F~~ 45 (392)
+..||+|++.+||..||++++.+++.|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999999885443
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.77 E-value=2.2e-09 Score=70.43 Aligned_cols=44 Identities=43% Similarity=0.791 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHhcCCccccccccccchhhhhhhCChHHHHHH
Q 016291 4 FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQ 47 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~F~~~~ 47 (392)
+..||+|++.+||.+|+++++++++.|||+|++++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56799999999999999999999999999999999999887654
No 7
>PHA02713 hypothetical protein; Provisional
Probab=98.74 E-value=1.6e-06 Score=87.31 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=130.4
Q ss_pred EeeccceEEEEEcC-------ceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCC
Q 016291 114 FGHCHGIVCISLRY-------VKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDN 186 (392)
Q Consensus 114 ~~s~~GLl~~~~~~-------~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~ 186 (392)
.+..+|.|.+..+. +.+..+||.+++|..+|+++. ++. .+ ....++. ||.++. +.
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-~R~----~~-----~~~~~~g-----~IYviG--G~- 360 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-NRC----RF-----SLAVIDD-----TIYAIG--GQ- 360 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-hhh----ce-----eEEEECC-----EEEEEC--Cc-
Confidence 44456666554431 368899999999999998865 321 11 1112222 566553 11
Q ss_pred CCCCCCcEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCC------------------CCceEEE
Q 016291 187 PGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFH------------------ESDSFIL 248 (392)
Q Consensus 187 ~~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~------------------~~~~~il 248 (392)
........+++|+..++.|..++ +++.. ......+.++|.+|-+...... .....+.
T Consensus 361 ~~~~~~~sve~Ydp~~~~W~~~~-~mp~~----r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 361 NGTNVERTIECYTMGDDKWKMLP-DMPIA----LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred CCCCCCceEEEEECCCCeEEECC-CCCcc----cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 11112457999999999999876 22222 1234567889999999864311 0124689
Q ss_pred EEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCC-C-CceeEEEEeeCCCCccc
Q 016291 249 SFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGV-K-AKWKKLLTIEGNSRLQK 325 (392)
Q Consensus 249 ~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~-~-~~W~~~~~i~~~~~~~~ 325 (392)
+||+++++|..++ +|. .......++++|+|.++...+ ..... .=..+-|+. . .+|+.+..++.... ..
T Consensus 436 ~YDP~td~W~~v~~m~~-----~r~~~~~~~~~~~IYv~GG~~--~~~~~-~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~ 506 (557)
T PHA02713 436 RYDTVNNIWETLPNFWT-----GTIRPGVVSHKDDIYVVCDIK--DEKNV-KTCIFRYNTNTYNGWELITTTESRLS-AL 506 (557)
T ss_pred EECCCCCeEeecCCCCc-----ccccCcEEEECCEEEEEeCCC--CCCcc-ceeEEEecCCCCCCeeEccccCcccc-cc
Confidence 9999999999764 333 122236789999999985432 11111 111233332 3 47999887763321 12
Q ss_pred ceEEecCCeEEEEeC-CC--eEEEEECCCCCEEEeeecccc
Q 016291 326 PLVFWKSDELVMEDK-TG--KFCRYNLRTGEIKDLPVRRRL 363 (392)
Q Consensus 326 p~~~~~~~~il~~~~-~~--~~~~ydl~t~~~~~v~~~~~~ 363 (392)
.+++ -+|.|+.+.. ++ .+-+||++|++|+.+.-+...
T Consensus 507 ~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 507 HTIL-HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred eeEE-ECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 2222 3567777653 22 488999999999988876543
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.72 E-value=4.3e-09 Score=66.44 Aligned_cols=39 Identities=41% Similarity=0.768 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhcCCccccccccccchhhhhhhCChHHHH
Q 016291 7 LPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVV 45 (392)
Q Consensus 7 LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~F~~ 45 (392)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.45 E-value=2.2e-05 Score=79.01 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=133.0
Q ss_pred EEeeccceEEEEEcC-------ceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE-Eec
Q 016291 113 FFGHCHGIVCISLRY-------VKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL-YFI 184 (392)
Q Consensus 113 ~~~s~~GLl~~~~~~-------~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~ 184 (392)
-+++.+|.|-...+. +.+..+||.+.+|..+|++.. ++ ...+.+ +-..++.++. ++
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R----------~~~~v~----~l~g~iYavGG~d- 390 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KR----------SDFGVA----VLDGKLYAVGGFD- 390 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-cc----------ccceeE----EECCEEEEEeccc-
Confidence 356667776655421 379999999999999999876 32 112222 1134556554 22
Q ss_pred CCCCCCCCcEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCCC-CceEEEEEEcCCceEeEE-cC
Q 016291 185 DNPGCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHE-SDSFILSFDISDETFKKI-AG 262 (392)
Q Consensus 185 ~~~~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~il~fD~~~e~~~~i-~~ 262 (392)
+......+|.|+..++.|..+... ... -.....+.++|.+|-+....... .-..+-+||+.+.+|+.+ ++
T Consensus 391 ---g~~~l~svE~YDp~~~~W~~va~m-~~~----r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 391 ---GEKSLNSVECYDPVTNKWTPVAPM-LTR----RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred ---cccccccEEEecCCCCcccccCCC-Ccc----eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc
Confidence 123355899999999999998722 221 12345678999999998755433 446899999999999976 34
Q ss_pred CCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeee-CCCCceeEEEEeeCCCCcccceE-EecCCeEEEEeC
Q 016291 263 PSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEV-GVKAKWKKLLTIEGNSRLQKPLV-FWKSDELVMEDK 340 (392)
Q Consensus 263 P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~-~~~~~W~~~~~i~~~~~~~~p~~-~~~~~~il~~~~ 340 (392)
+. .+....+..++|+|.++...+ ....++- .+-+ .....|..+..+... +...+ +.-++.++....
T Consensus 463 ~~-----~R~~~g~a~~~~~iYvvGG~~--~~~~~~~--VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 463 NT-----RRSGFGVAVLNGKIYVVGGFD--GTSALSS--VERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred cc-----ccccceEEEECCEEEEECCcc--CCCccce--EEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEec
Confidence 44 233347889999999985432 1111111 2222 225689998655432 22222 223455555532
Q ss_pred ------CCeEEEEECCCCCEEEeee
Q 016291 341 ------TGKFCRYNLRTGEIKDLPV 359 (392)
Q Consensus 341 ------~~~~~~ydl~t~~~~~v~~ 359 (392)
-..+-.||..+++|+...-
T Consensus 531 ~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 531 FDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccCccccceeEEcCCCCCceeeCCC
Confidence 2258899999999998764
No 10
>PHA03098 kelch-like protein; Provisional
Probab=98.43 E-value=5e-05 Score=76.51 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=118.2
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.++.+||.|++|..+|+++. |+. .. ..+ ..+. +++.+. +.. .......+++|+..+++|+..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~-~R~----~~---~~~--~~~~-----~lyv~G--G~~-~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIY-PRK----NP---GVT--VFNN-----RIYVIG--GIY-NSISLNTVESWKPGESKWREE 373 (534)
T ss_pred cEEEEeCCCCeeeECCCCCc-ccc----cc---eEE--EECC-----EEEEEe--CCC-CCEecceEEEEcCCCCceeeC
Confidence 68999999999999998764 321 11 111 1221 344443 111 112245789999999999977
Q ss_pred eecccccceeccccccCeEECceEEEEeecCC-CCCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEE
Q 016291 209 NINLFAAGICFLQRLESLYFNRAFHWMAWGDF-HESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFV 286 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~ 286 (392)
.. ++.+ ......+.++|.+|-+..... ......+..||+.+.+|..+. +|.. ......+..+|++.++
T Consensus 374 ~~-lp~~----r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 374 PP-LIFP----RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-----HYGGCAIYHDGKIYVI 443 (534)
T ss_pred CC-cCcC----CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-----ccCceEEEECCEEEEE
Confidence 52 2222 123345778999999876421 112357899999999999774 3431 1122456778999887
Q ss_pred EecCCCCC--CeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeC------CCeEEEEECCCCCEEEee
Q 016291 287 LHDASAVQ--SLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDK------TGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 287 ~~~~~~~~--~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~------~~~~~~ydl~t~~~~~v~ 358 (392)
........ ..-.+|+.+.. ...|+++-.++.. ......++ -++.|+++.. ...+..||+++++|+.+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPV--TNKWTELSSLNFP-RINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCccCCCCCcccceEEEecCC--CCceeeCCCCCcc-cccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 43211000 01236665543 4689987544321 11122233 3577777643 236899999999999876
Q ss_pred e
Q 016291 359 V 359 (392)
Q Consensus 359 ~ 359 (392)
.
T Consensus 520 ~ 520 (534)
T PHA03098 520 K 520 (534)
T ss_pred C
Confidence 4
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.42 E-value=0.00019 Score=68.10 Aligned_cols=243 Identities=13% Similarity=0.102 Sum_probs=130.7
Q ss_pred eccceEEEEEcC--ceEEEEcC--cccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE-EecCC--CC
Q 016291 116 HCHGIVCISLRY--VKVILCNS--ATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL-YFIDN--PG 188 (392)
Q Consensus 116 s~~GLl~~~~~~--~~~~V~NP--~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~--~~ 188 (392)
..++-|.+..+. ..+++.++ .+++|..+|+++..++. .. .. ...+. +|..+. ..... ..
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~----~~---~~--~~~~~-----~iYv~GG~~~~~~~~~ 80 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN----QA---VA--AAIDG-----KLYVFGGIGKANSEGS 80 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc----cc---eE--EEECC-----EEEEEeCCCCCCCCCc
Confidence 345555443321 36777774 78899999987631221 11 11 11221 555553 11110 00
Q ss_pred CCCCcEEEEEeCCCCceeEeeecccccceeccccccCe-EECceEEEEeecCCCC-------------------------
Q 016291 189 CESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESL-YFNRAFHWMAWGDFHE------------------------- 242 (392)
Q Consensus 189 ~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~------------------------- 242 (392)
......++.|+..+++|+.+..+.+.. ......+ .++|.+|-+.......
T Consensus 81 ~~~~~~v~~Yd~~~~~W~~~~~~~p~~----~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 81 PQVFDDVYRYDPKKNSWQKLDTRSPVG----LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred ceecccEEEEECCCCEEecCCCCCCCc----ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 012347899999999999886322211 1112223 5799999987643100
Q ss_pred ---------CceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCcee
Q 016291 243 ---------SDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWK 312 (392)
Q Consensus 243 ---------~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~ 312 (392)
....+.+||+.+.+|+.+. +|.. ......++..+|+|.++.-.........++|..+-+.....|.
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~ 232 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL----GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWN 232 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCC----cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceee
Confidence 0147999999999999874 4431 1112356788999999854321122335666655332246899
Q ss_pred EEEEeeCCCC-----cccceEEecCCeEEEEeCC-----------------------CeEEEEECCCCCEEEeeeccccc
Q 016291 313 KLLTIEGNSR-----LQKPLVFWKSDELVMEDKT-----------------------GKFCRYNLRTGEIKDLPVRRRLR 364 (392)
Q Consensus 313 ~~~~i~~~~~-----~~~p~~~~~~~~il~~~~~-----------------------~~~~~ydl~t~~~~~v~~~~~~~ 364 (392)
++..++.... .....++.-+++|+++... ..+-+||+++++|+.+.......
T Consensus 233 ~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~ 312 (346)
T TIGR03547 233 KLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL 312 (346)
T ss_pred ecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc
Confidence 8776643211 0011122345677776421 13568999999998876432222
Q ss_pred ee-eEEEEecceecccc
Q 016291 365 KY-SAVNYLSSLVSVRA 380 (392)
Q Consensus 365 ~~-~~~~y~~sl~~~~~ 380 (392)
.. .+......|.-++|
T Consensus 313 ~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 313 AYGVSVSWNNGVLLIGG 329 (346)
T ss_pred eeeEEEEcCCEEEEEec
Confidence 22 33334444444443
No 12
>PHA02713 hypothetical protein; Provisional
Probab=98.41 E-value=6.3e-05 Score=75.82 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=125.3
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.+..+||.|++|..+++++. ++. .+ .. ...+. +|+.+. +..........++.|+..++.|..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~r~----~~---~~--a~l~~-----~IYviG--G~~~~~~~~~~v~~Yd~~~n~W~~~ 335 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-HII----NY---AS--AIVDN-----EIIIAG--GYNFNNPSLNKVYKINIENKIHVEL 335 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-ccc----ce---EE--EEECC-----EEEEEc--CCCCCCCccceEEEEECCCCeEeeC
Confidence 56789999999999987765 210 11 11 11121 455553 1100111245789999999999877
Q ss_pred eecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEE
Q 016291 209 NINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVL 287 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~ 287 (392)
+ +++.. ......+.++|.+|-+.+.........+-+||+.+.+|..++ +|.. ......+.++|+|.++.
T Consensus 336 ~-~m~~~----R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-----r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 336 P-PMIKN----RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-----LSSYGMCVLDQYIYIIG 405 (557)
T ss_pred C-CCcch----hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-----cccccEEEECCEEEEEe
Confidence 5 22222 123456789999999987642222346899999999999874 3432 22235678899999885
Q ss_pred ecCCCC-----------------CCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCC-------Ce
Q 016291 288 HDASAV-----------------QSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKT-------GK 343 (392)
Q Consensus 288 ~~~~~~-----------------~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~-------~~ 343 (392)
...... ...-.+...+. ....|..+..+.... ....+++ -+|.|+++... ..
T Consensus 406 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r-~~~~~~~-~~~~IYv~GG~~~~~~~~~~ 481 (557)
T PHA02713 406 GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGT-IRPGVVS-HKDDIYVVCDIKDEKNVKTC 481 (557)
T ss_pred CCCcccccccccccccccccccccccceEEEECC--CCCeEeecCCCCccc-ccCcEEE-ECCEEEEEeCCCCCCcccee
Confidence 432100 00011222221 246798766554221 1222333 35778777431 13
Q ss_pred EEEEECCC-CCEEEeeecccc-ceeeEEEEecceecccc
Q 016291 344 FCRYNLRT-GEIKDLPVRRRL-RKYSAVNYLSSLVSVRA 380 (392)
Q Consensus 344 ~~~ydl~t-~~~~~v~~~~~~-~~~~~~~y~~sl~~~~~ 380 (392)
+..||+++ ++|+.+..-... .......+...+--++|
T Consensus 482 ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 482 IFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHC 520 (557)
T ss_pred EEEecCCCCCCeeEccccCcccccceeEEECCEEEEEee
Confidence 67999999 899988643322 11234444444444443
No 13
>PLN02193 nitrile-specifier protein
Probab=98.40 E-value=0.0001 Score=72.96 Aligned_cols=207 Identities=11% Similarity=0.033 Sum_probs=120.4
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.++++||.+.+|..+|+....|.. . .. ......++. +++.+. ... .......+++|++.++.|+.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~--~-~~---~~~~v~~~~-----~lYvfG--G~~-~~~~~ndv~~yD~~t~~W~~l 259 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHL--S-CL---GVRMVSIGS-----TLYVFG--GRD-ASRQYNGFYSFDTTTNEWKLL 259 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCC--c-cc---ceEEEEECC-----EEEEEC--CCC-CCCCCccEEEEECCCCEEEEc
Confidence 589999999999988754322310 0 00 111111221 344442 110 111245789999999999987
Q ss_pred eecc--cccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEE
Q 016291 209 NINL--FAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFV 286 (392)
Q Consensus 209 ~~~~--~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~ 286 (392)
.... +.. ......+..++.+|.+...........+.+||+.+.+|..++.|..... ......++..+|++.++
T Consensus 260 ~~~~~~P~~----R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 260 TPVEEGPTP----RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFS-IRGGAGLEVVQGKVWVV 334 (470)
T ss_pred CcCCCCCCC----ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCC-CCCCcEEEEECCcEEEE
Confidence 6221 111 1223456789999998765422223468899999999998875532111 11122566789999887
Q ss_pred EecCCCCCCeEEEEEEeeeCCCCceeEEEEeeC--CCCcccceEEecCCeEEEEeCC---------------CeEEEEEC
Q 016291 287 LHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEG--NSRLQKPLVFWKSDELVMEDKT---------------GKFCRYNL 349 (392)
Q Consensus 287 ~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~--~~~~~~p~~~~~~~~il~~~~~---------------~~~~~ydl 349 (392)
.-.. ....-++|+.+-. ...|.++..+.. ........++ -++.|+++... ..++.||+
T Consensus 335 GG~~--g~~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 335 YGFN--GCEVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred ECCC--CCccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 4322 1223467777754 467998876531 1111222222 34566665321 14899999
Q ss_pred CCCCEEEeee
Q 016291 350 RTGEIKDLPV 359 (392)
Q Consensus 350 ~t~~~~~v~~ 359 (392)
.|++|+.+..
T Consensus 410 ~t~~W~~~~~ 419 (470)
T PLN02193 410 ETLQWERLDK 419 (470)
T ss_pred CcCEEEEccc
Confidence 9999999874
No 14
>PLN02153 epithiospecifier protein
Probab=98.40 E-value=0.00018 Score=68.19 Aligned_cols=214 Identities=10% Similarity=0.012 Sum_probs=117.1
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.++++||.+.+|..+|+....|+.. .... .. ..++ =+|+.+. .... ......+++|+..++.|+.+
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~-~~~~---~~--~~~~-----~~iyv~G--G~~~-~~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRIS-CLGV---RM--VAVG-----TKLYIFG--GRDE-KREFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCc-cCce---EE--EEEC-----CEEEEEC--CCCC-CCccCcEEEEECCCCEEEEe
Confidence 6899999999999988654323210 0001 11 1111 1455553 1111 11234789999999999987
Q ss_pred eecccccceeccccccCeEECceEEEEeecCCCC------CceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCe
Q 016291 209 NINLFAAGICFLQRLESLYFNRAFHWMAWGDFHE------SDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNES 282 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~ 282 (392)
........+........+..+|.+|.+....... .-..+.+||+++.+|..++.+..... .......+..+|+
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~-~r~~~~~~~~~~~ 195 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE-KRGGAGFAVVQGK 195 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC-CCCcceEEEECCe
Confidence 5210000000012334577899999987653210 11358899999999998764321100 1111256778999
Q ss_pred EEEEEecCC-------CCCCeEEEEEEeeeCCCCceeEEEEeeCC--CCcccceEEecCCeEEEEeCC------------
Q 016291 283 LAFVLHDAS-------AVQSLMEIWIMDEVGVKAKWKKLLTIEGN--SRLQKPLVFWKSDELVMEDKT------------ 341 (392)
Q Consensus 283 L~l~~~~~~-------~~~~~i~iW~l~~~~~~~~W~~~~~i~~~--~~~~~p~~~~~~~~il~~~~~------------ 341 (392)
++++.-... .....-+|++.+-. ..+|+++...... ........+ -++.|+++...
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 272 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPG 272 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccc
Confidence 988732110 00011245555532 4679988654311 111122222 34566665321
Q ss_pred ---CeEEEEECCCCCEEEeeec
Q 016291 342 ---GKFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 342 ---~~~~~ydl~t~~~~~v~~~ 360 (392)
..++.||+++++|+.+...
T Consensus 273 ~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 273 TLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred cccccEEEEEcCccEEEeccCC
Confidence 2689999999999998643
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.33 E-value=0.00026 Score=67.97 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=132.1
Q ss_pred EeeccceEEEEEcC--ceEEEEcCc--ccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE-EecCCCC
Q 016291 114 FGHCHGIVCISLRY--VKVILCNSA--TREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL-YFIDNPG 188 (392)
Q Consensus 114 ~~s~~GLl~~~~~~--~~~~V~NP~--T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~~~ 188 (392)
.+..++-|.+..+. ..+++.++. +++|..+|+++..|+. .. .. ...+ . +|+.+. +......
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~----~~---~~--v~~~----~-~IYV~GG~~~~~~~ 99 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE----QA---VA--AFID----G-KLYVFGGIGKTNSE 99 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc----cc---eE--EEEC----C-EEEEEcCCCCCCCC
Confidence 34456655554332 357777765 5789999876532221 11 11 1112 1 344442 1110000
Q ss_pred --CCCCcEEEEEeCCCCceeEeeecccccceeccccccCeE-ECceEEEEeecCCC------------------------
Q 016291 189 --CESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLY-FNRAFHWMAWGDFH------------------------ 241 (392)
Q Consensus 189 --~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~------------------------ 241 (392)
......+++|+..+++|+.+....+.. ......+. .+|.+|-+......
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~----~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~ 175 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVG----LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKIND 175 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCCCCCCc----ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHH
Confidence 011347899999999999986321111 11222333 79999999764310
Q ss_pred ----------CCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCc
Q 016291 242 ----------ESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAK 310 (392)
Q Consensus 242 ----------~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~ 310 (392)
.....+.+||+.+.+|..+. +|.. .......+..+++|.++.-.........++|..+-+.....
T Consensus 176 ~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 176 AYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK 251 (376)
T ss_pred HHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC----CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcc
Confidence 01246999999999999874 4431 11122567789999988543211234567777654333578
Q ss_pred eeEEEEeeCCCC-c-----ccceEEecCCeEEEEeCCC-----------------------eEEEEECCCCCEEEeeecc
Q 016291 311 WKKLLTIEGNSR-L-----QKPLVFWKSDELVMEDKTG-----------------------KFCRYNLRTGEIKDLPVRR 361 (392)
Q Consensus 311 W~~~~~i~~~~~-~-----~~p~~~~~~~~il~~~~~~-----------------------~~~~ydl~t~~~~~v~~~~ 361 (392)
|.++..++.... . ....+..-++.|+++.... .+-.||+++++|+.+....
T Consensus 252 W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 252 WQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred eeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 998887753211 0 1111223456776653210 1347999999999876432
Q ss_pred cc-ceeeEEEEecceecccc
Q 016291 362 RL-RKYSAVNYLSSLVSVRA 380 (392)
Q Consensus 362 ~~-~~~~~~~y~~sl~~~~~ 380 (392)
.. ....+...-..+.-++|
T Consensus 332 ~~r~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 332 QGLAYGVSVSWNNGVLLIGG 351 (376)
T ss_pred CCccceEEEEeCCEEEEEcC
Confidence 22 22234444444555544
No 16
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.31 E-value=8.8e-05 Score=74.70 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=126.5
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE-EecCCCCCCCCcEEEEEeCCCCceeE
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL-YFIDNPGCESPIKVEMYTLSTDSWRK 207 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~~~~~~~~~~~vyss~~~~Wr~ 207 (392)
.+..+||.+++|..+.+++. ++ ...+.+.-. -+|..+. ++. +......+++|++.++.|..
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~-~r----------~~~~~~~~~----~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPS-PR----------CRVGVAVLN----GKLYVVGGYDS---GSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eeEEecCCcCcEeecCCCCc-cc----------ccccEEEEC----CEEEEEccccC---CCcccceEEEecCCCCceec
Confidence 68899999999999988775 32 112222211 1555553 221 22346789999999999998
Q ss_pred eeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEE
Q 016291 208 VNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFV 286 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~ 286 (392)
++ ++.... ..-..+.++|.+|-+........-..+-.||+.+.+|..+. .+. .......++++|+|+++
T Consensus 364 ~a-~M~~~R----~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-----~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 364 VA-PMNTKR----SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-----RRSGHGVAVLGGKLYII 433 (571)
T ss_pred cC-CccCcc----ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-----ceeeeEEEEECCEEEEE
Confidence 65 222221 23356789999999998765444557999999999999875 443 22234778999999999
Q ss_pred EecCCCCCCeEEEEEEeee-CCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCC------CeEEEEECCCCCEEEee
Q 016291 287 LHDASAVQSLMEIWIMDEV-GVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKT------GKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 287 ~~~~~~~~~~i~iW~l~~~-~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~------~~~~~ydl~t~~~~~v~ 358 (392)
..... ... .+=.++-| .....|..+..+..... ...+++. ++.|+.+... ..+-+||+++++|..+.
T Consensus 434 GG~~~--~~~-~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 434 GGGDG--SSN-CLNSVECYDPETNTWTLIAPMNTRRS-GFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred cCcCC--Ccc-ccceEEEEcCCCCceeecCCcccccc-cceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 54321 111 11112222 23578999887764422 1223343 5677776532 24889999999999996
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=98.29 E-value=0.00013 Score=72.37 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=112.7
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.+..+||.+++|..+|+++. |+. .+ .. ...+. +|..+. +.. ....++.|+..+++|..+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~-~r~----~~---~~--v~~~~-----~iYviG--G~~----~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS-PRL----YA---SG--VPANN-----KLYVVG--GLP----NPTSVERWFHGDAAWVNM 346 (480)
T ss_pred eEEEEECCCCEEEECCCCCc-hhh----cc---eE--EEECC-----EEEEEC--CcC----CCCceEEEECCCCeEEEC
Confidence 67789999999999998765 321 11 11 11221 555553 110 124589999999999987
Q ss_pred eecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEEEe
Q 016291 209 NINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLH 288 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~ 288 (392)
+ +++.. ......+.++|.+|-+.+... ....+-.||+++++|+.++.++. .......+..+|+|.++..
T Consensus 347 ~-~l~~~----r~~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~----~r~~~~~~~~~~~IYv~GG 415 (480)
T PHA02790 347 P-SLLKP----RCNPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYY----PHYKSCALVFGRRLFLVGR 415 (480)
T ss_pred C-CCCCC----CcccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCC----ccccceEEEECCEEEEECC
Confidence 5 22222 123456789999999986532 12467889999999998743331 1122356788999988742
Q ss_pred cCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCC------CeEEEEECCCCCEEEe
Q 016291 289 DASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKT------GKFCRYNLRTGEIKDL 357 (392)
Q Consensus 289 ~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~------~~~~~ydl~t~~~~~v 357 (392)
..+++-. ....|+.+..++... .....++ -+|+|+++... ..+-.||+++++|+..
T Consensus 416 -------~~e~ydp----~~~~W~~~~~m~~~r-~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 -------NAEFYCE----SSNTWTLIDDPIYPR-DNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -------ceEEecC----CCCcEeEcCCCCCCc-cccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 1233221 246799876554221 1122233 35677776431 2578999999999743
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.22 E-value=0.00056 Score=64.26 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=101.9
Q ss_pred CcEEEEEeCCCCcee----EeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEc-CCCcc
Q 016291 192 PIKVEMYTLSTDSWR----KVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIA-GPSST 266 (392)
Q Consensus 192 ~~~~~vyss~~~~Wr----~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~ 266 (392)
...++.|+..++.|. .+. +++.. .....++.++|.+|-+...........+.+||+.+.+|+.++ +|..
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~-~lp~~----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~- 160 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIG-NLPFT----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE- 160 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcC-CCCcC----ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-
Confidence 357888999998883 332 22222 123456788999999986532222457999999999999875 5542
Q ss_pred cccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC--C-C-cccceEEecCCeEEEEeCC-
Q 016291 267 LNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN--S-R-LQKPLVFWKSDELVMEDKT- 341 (392)
Q Consensus 267 ~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~--~-~-~~~p~~~~~~~~il~~~~~- 341 (392)
.......+..+++|.++.-.. .....++|+.+-. ..+|.++..+... . . ......+..++.|+++...
T Consensus 161 ---~r~~~~~~~~~~~iYv~GG~~--~~~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 161 ---PRVQPVCVKLQNELYVFGGGS--NIAYTDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ---CCCcceEEEECCEEEEEcCCC--CccccceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 122224567899999885432 1223456666543 4679876644211 0 0 0111122234566655321
Q ss_pred -------------------------------------CeEEEEECCCCCEEEeeecc-cc-ceeeEEEEecceecccc
Q 016291 342 -------------------------------------GKFCRYNLRTGEIKDLPVRR-RL-RKYSAVNYLSSLVSVRA 380 (392)
Q Consensus 342 -------------------------------------~~~~~ydl~t~~~~~v~~~~-~~-~~~~~~~y~~sl~~~~~ 380 (392)
..+..||+++++|+.+.... .. .-......-..|.-++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Confidence 35899999999999887321 11 11134555555555444
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.14 E-value=0.00037 Score=70.30 Aligned_cols=221 Identities=14% Similarity=0.028 Sum_probs=123.6
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.+.-+|+.+++|..++..+. . . .+ .+...+ -+++.+. +..........+..|+..+++|..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~----~-~~-----~~~~~~-----~~lyv~G--G~~~~~~~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-V----Y-CF-----GSVVLN-----NVIYFIG--GMNKNNLSVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred eeeecchhhhhcccccCccc-c----c-cc-----eEEEEC-----CEEEEEC--CCcCCCCeeccEEEEeCCCCeeeEC
Confidence 45567888999988875432 0 0 11 111111 1344442 1111111234688999999999877
Q ss_pred eecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEE
Q 016291 209 NINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVL 287 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~ 287 (392)
.. ++.. ......+.++|.+|-+...........+..||+.+.+|+.++ +|.. ......+..+|++.++.
T Consensus 327 ~~-~~~~----R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-----r~~~~~~~~~~~iYv~G 396 (534)
T PHA03098 327 PE-LIYP----RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-----RYNPCVVNVNNLIYVIG 396 (534)
T ss_pred CC-CCcc----cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-----CccceEEEECCEEEEEC
Confidence 52 2211 123456788999999987643223346889999999999764 4432 22235577899999884
Q ss_pred ecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCC---------CeEEEEECCCCCEEEee
Q 016291 288 HDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKT---------GKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 288 ~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~---------~~~~~ydl~t~~~~~v~ 358 (392)
.........=.++..+-. ..+|.++..++... ... -++..++.|+++... ..+..||+++++|+.+.
T Consensus 397 G~~~~~~~~~~v~~yd~~--t~~W~~~~~~p~~r-~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 397 GISKNDELLKTVECFSLN--TNKWSKGSPLPISH-YGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CcCCCCcccceEEEEeCC--CCeeeecCCCCccc-cCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 321111112244555432 46799876544221 122 233345677666421 13899999999999986
Q ss_pred eccccc-eeeEEEEecceeccccC
Q 016291 359 VRRRLR-KYSAVNYLSSLVSVRAG 381 (392)
Q Consensus 359 ~~~~~~-~~~~~~y~~sl~~~~~~ 381 (392)
...... ....+.+...+.-++|.
T Consensus 473 ~~~~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 473 SLNFPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCcccccceEEEECCEEEEEcCC
Confidence 432221 11345555555555543
No 20
>PLN02193 nitrile-specifier protein
Probab=97.92 E-value=0.0051 Score=60.93 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=102.7
Q ss_pred cEEEEEeCCCCceeEeeec--ccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccC
Q 016291 193 IKVEMYTLSTDSWRKVNIN--LFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNAR 270 (392)
Q Consensus 193 ~~~~vyss~~~~Wr~~~~~--~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~ 270 (392)
..+++|+..+++|..+... .|... ......+.+++.+|-+........-..+.+||+.+.+|+.+........ .
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~---~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~ 268 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLS---CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT-P 268 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCc---ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-C
Confidence 3689999999999976421 11100 1123457789999998865432223568899999999998743210000 1
Q ss_pred CCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC--CCcccceEEecCCeEEEEeC-----CCe
Q 016291 271 KDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN--SRLQKPLVFWKSDELVMEDK-----TGK 343 (392)
Q Consensus 271 ~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~--~~~~~p~~~~~~~~il~~~~-----~~~ 343 (392)
......+..+++|.++.-... ....-++|..+-. ..+|..+...... ......+.+. +++|+++.. ...
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~-~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~d 344 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSA-TARLKTLDSYNIV--DKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDD 344 (470)
T ss_pred ccceEEEEECCEEEEECCCCC-CCCcceEEEEECC--CCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCc
Confidence 222255677899988743211 1122345555532 4679876432111 1112223333 466666532 146
Q ss_pred EEEEECCCCCEEEeeecc----ccceeeEEEEecceeccccC
Q 016291 344 FCRYNLRTGEIKDLPVRR----RLRKYSAVNYLSSLVSVRAG 381 (392)
Q Consensus 344 ~~~ydl~t~~~~~v~~~~----~~~~~~~~~y~~sl~~~~~~ 381 (392)
+..||+++++|+.+...+ ......+..+-..|.-++|.
T Consensus 345 v~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 345 VHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred eEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 999999999999986532 11222455555666655553
No 21
>PLN02153 epithiospecifier protein
Probab=97.88 E-value=0.0041 Score=58.92 Aligned_cols=184 Identities=8% Similarity=0.028 Sum_probs=101.1
Q ss_pred cEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCC-CcccccCC
Q 016291 193 IKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGP-SSTLNARK 271 (392)
Q Consensus 193 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P-~~~~~~~~ 271 (392)
..+++|+..++.|............ .......+.+++.+|-+...........+.+||+.+.+|..++-. ........
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRI-SCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCC-ccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 4689999999999977522111100 011234578899999998654222234689999999999987421 10000011
Q ss_pred CCceEEEeCCeEEEEEecCCCC----C-CeEEEEEEeeeCCCCceeEEEEeeC--CCCcccceEEecCCeEEEEeC----
Q 016291 272 DSRELIVLNESLAFVLHDASAV----Q-SLMEIWIMDEVGVKAKWKKLLTIEG--NSRLQKPLVFWKSDELVMEDK---- 340 (392)
Q Consensus 272 ~~~~L~~~~g~L~l~~~~~~~~----~-~~i~iW~l~~~~~~~~W~~~~~i~~--~~~~~~p~~~~~~~~il~~~~---- 340 (392)
.....+..+++|.++.-..... . ..-+||+.+-. ...|..+..... .......+++. +++|+++..
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATS 205 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccc
Confidence 2225567889988873321100 0 11246666543 467997654321 11111223333 456655421
Q ss_pred ----------CCeEEEEECCCCCEEEeeecc----ccceeeEEEEecceecccc
Q 016291 341 ----------TGKFCRYNLRTGEIKDLPVRR----RLRKYSAVNYLSSLVSVRA 380 (392)
Q Consensus 341 ----------~~~~~~ydl~t~~~~~v~~~~----~~~~~~~~~y~~sl~~~~~ 380 (392)
...+..||+++++|+++...+ .......+.+...+.-++|
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 135899999999999987432 1122234445555555554
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=97.54 E-value=0.0043 Score=61.57 Aligned_cols=167 Identities=6% Similarity=-0.042 Sum_probs=103.4
Q ss_pred CcEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEc-CCCcccccC
Q 016291 192 PIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIA-GPSSTLNAR 270 (392)
Q Consensus 192 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~ 270 (392)
...++.|+..++.|..++. ++... .....+.++|.+|-+.+... ...+-.||+.+.+|..++ +|. .
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~-m~~~r----~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~-----~ 352 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPP-MNSPR----LYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLK-----P 352 (480)
T ss_pred CCeEEEEECCCCEEEECCC-CCchh----hcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCC-----C
Confidence 4578899999999998863 22221 22345789999999987531 245789999999998763 343 1
Q ss_pred CCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEECC
Q 016291 271 KDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLR 350 (392)
Q Consensus 271 ~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~ 350 (392)
......++++|+|.++..... ....++.|-. ....|+.+..++.. ......+.-+|.|+++. +..-+||++
T Consensus 353 r~~~~~~~~~g~IYviGG~~~-~~~~ve~ydp----~~~~W~~~~~m~~~--r~~~~~~~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 353 RCNPAVASINNVIYVIGGHSE-TDTTTEYLLP----NHDQWQFGPSTYYP--HYKSCALVFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CcccEEEEECCEEEEecCcCC-CCccEEEEeC----CCCEEEeCCCCCCc--cccceEEEECCEEEEEC--CceEEecCC
Confidence 222367889999999854321 1234454422 24679886544422 11222333467777764 457789999
Q ss_pred CCCEEEeeecccc-ceeeEEEEecceecccc
Q 016291 351 TGEIKDLPVRRRL-RKYSAVNYLSSLVSVRA 380 (392)
Q Consensus 351 t~~~~~v~~~~~~-~~~~~~~y~~sl~~~~~ 380 (392)
+++|+.+...... .......+...+--++|
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEECCEEEEECC
Confidence 9999988643222 22245555555555554
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.48 E-value=0.033 Score=53.52 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=84.5
Q ss_pred cEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCC---CCCceEEEEEEcCCceEeEEc-CCCcccc
Q 016291 193 IKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDF---HESDSFILSFDISDETFKKIA-GPSSTLN 268 (392)
Q Consensus 193 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~~~il~fD~~~e~~~~i~-~P~~~~~ 268 (392)
..+++|+..++.|..+.. ++... ......+.+++.+|.+..... .........||+++.+|..+. +|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~-~p~~~---~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE-SPFLG---TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCc-CCCCC---CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 579999999999998762 22111 123345778999999986421 122334556788889998763 4542100
Q ss_pred c-CCC-Cc-eEEEeCCeEEEEEecCCCCC------C-------eEEEEEEeee-CCCCceeEEEEeeCCCCcccceEEec
Q 016291 269 A-RKD-SR-ELIVLNESLAFVLHDASAVQ------S-------LMEIWIMDEV-GVKAKWKKLLTIEGNSRLQKPLVFWK 331 (392)
Q Consensus 269 ~-~~~-~~-~L~~~~g~L~l~~~~~~~~~------~-------~i~iW~l~~~-~~~~~W~~~~~i~~~~~~~~p~~~~~ 331 (392)
. ... .. ..+.++|+|.++.-...... . .-.+|..+-+ -....|++...++... ....++.-
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~~av~~ 342 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYGVSVSW 342 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cceEEEEe
Confidence 0 000 11 13567899888743210000 0 0012322222 1135798776554321 12234444
Q ss_pred CCeEEEEeCC-------CeEEEEECCCCCEE
Q 016291 332 SDELVMEDKT-------GKFCRYNLRTGEIK 355 (392)
Q Consensus 332 ~~~il~~~~~-------~~~~~ydl~t~~~~ 355 (392)
+++|+++... ..+..|+.+++++.
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 5777776431 15777777776654
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.1e-05 Score=68.41 Aligned_cols=39 Identities=26% Similarity=0.541 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHhcCCccccccccccchhhhhhhCChH
Q 016291 4 FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPK 42 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~ 42 (392)
|..||||+++.||+.||.|+|.++..|||+|+++.++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 678999999999999999999999999999999998765
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.41 E-value=0.012 Score=55.24 Aligned_cols=153 Identities=14% Similarity=0.045 Sum_probs=87.6
Q ss_pred EeeccceEEEEEcC------ceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCC
Q 016291 114 FGHCHGIVCISLRY------VKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNP 187 (392)
Q Consensus 114 ~~s~~GLl~~~~~~------~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~ 187 (392)
.+..+|.|.+..+. ..++++||.|.+|..+|+++..++. ......++. |+..+. ....
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~---------~~~~~~~~~-----~iYv~G--G~~~ 182 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV---------QPVCVKLQN-----ELYVFG--GGSN 182 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC---------cceEEEECC-----EEEEEc--CCCC
Confidence 44567776555431 3799999999999999865432221 111111221 454443 1100
Q ss_pred CCCCCcEEEEEeCCCCceeEeeecccccceecccccc-CeEECceEEEEeecCCC-------------------------
Q 016291 188 GCESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLE-SLYFNRAFHWMAWGDFH------------------------- 241 (392)
Q Consensus 188 ~~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~------------------------- 241 (392)
.....+++|+..+++|+.+........+....... .+..+|.+|-+......
T Consensus 183 --~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
T TIGR03548 183 --IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYF 260 (323)
T ss_pred --ccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHh
Confidence 11235689999999999876321001111111122 24457899988764311
Q ss_pred -------CCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEEe
Q 016291 242 -------ESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVLH 288 (392)
Q Consensus 242 -------~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~~ 288 (392)
.....+.+||+.+++|+.+. +|.. ......++..+++|.++.-
T Consensus 261 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 261 LKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF----ARCGAALLLTGNNIFSING 311 (323)
T ss_pred CCCccccCcCceEEEEECCCCeeeEccccccc----ccCchheEEECCEEEEEec
Confidence 01246999999999999885 4421 1112257888999998854
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.05 E-value=0.014 Score=51.45 Aligned_cols=211 Identities=13% Similarity=0.113 Sum_probs=118.9
Q ss_pred eEEEEcCcccccccCCCCCCCC---CCCCCceeeccceeeEeeeCCCCCeEEEEEE-----EecCCCCCCCCcEEEEEeC
Q 016291 129 KVILCNSATREFRELPVSCFHP---SPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL-----YFIDNPGCESPIKVEMYTL 200 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p---~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-----~~~~~~~~~~~~~~~vyss 200 (392)
.+.|.|-.+-+|..+|+--.+. .......+ ..| ...||.+. .....++...+..+.-|+.
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPy-------qRY-----GHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp 112 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPY-------QRY-----GHTVVEYQDKAYVWGGRNDDEGACNLLYEFDP 112 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccch-------hhc-----CceEEEEcceEEEEcCccCcccccceeeeecc
Confidence 7899999999999999733211 00000011 111 12233321 1222222234667888999
Q ss_pred CCCceeEeeec--ccccceeccccccCeEECceEEEEeecCCC--CCceEEEEEEcCCceEeEEc---CCCcccccCCCC
Q 016291 201 STDSWRKVNIN--LFAAGICFLQRLESLYFNRAFHWMAWGDFH--ESDSFILSFDISDETFKKIA---GPSSTLNARKDS 273 (392)
Q Consensus 201 ~~~~Wr~~~~~--~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--~~~~~il~fD~~~e~~~~i~---~P~~~~~~~~~~ 273 (392)
++..|++.+.. +|... -..++..++..+|-+...... ....-+-+||++|.+|+.+. .|+.. +++
T Consensus 113 ~t~~W~~p~v~G~vPgaR----DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw----RDF 184 (392)
T KOG4693|consen 113 ETNVWKKPEVEGFVPGAR----DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW----RDF 184 (392)
T ss_pred ccccccccceeeecCCcc----CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh----hhh
Confidence 99999976632 22221 233456677788888754322 22345889999999999885 35532 122
Q ss_pred ceEEEeCCeEEEEEecCC----C----CCCeEEEEEEeeeCCCCceeEEEEeeCCC-CcccceEEecCCeEEEEeC----
Q 016291 274 RELIVLNESLAFVLHDAS----A----VQSLMEIWIMDEVGVKAKWKKLLTIEGNS-RLQKPLVFWKSDELVMEDK---- 340 (392)
Q Consensus 274 ~~L~~~~g~L~l~~~~~~----~----~~~~i~iW~l~~~~~~~~W~~~~~i~~~~-~~~~p~~~~~~~~il~~~~---- 340 (392)
..-.+++|.+.++.-... + ..-.-+|-.++-. .+.|.+...-.... +.+.-..+..+|+++++..
T Consensus 185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT 262 (392)
T ss_pred hhhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEEcceEEEecccchh
Confidence 234566777777632110 0 0111234344433 35687763222211 2233445556788888743
Q ss_pred ----CCeEEEEECCCCCEEEeeecc
Q 016291 341 ----TGKFCRYNLRTGEIKDLPVRR 361 (392)
Q Consensus 341 ----~~~~~~ydl~t~~~~~v~~~~ 361 (392)
-..++.||.+|+.|+.|...+
T Consensus 263 ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred hhhhhcceeecccccchheeeeccC
Confidence 226899999999999998765
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.00 E-value=0.012 Score=55.06 Aligned_cols=210 Identities=10% Similarity=0.126 Sum_probs=112.7
Q ss_pred eEEEEcCcccccccC--CCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecC-----CCCCCCCcEEEEEeCC
Q 016291 129 KVILCNSATREFREL--PVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFID-----NPGCESPIKVEMYTLS 201 (392)
Q Consensus 129 ~~~V~NP~T~~~~~L--P~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~-----~~~~~~~~~~~vyss~ 201 (392)
.+|++|--+.+|+.+ |..|. |+ +.......|.. ++.+ |.+. -+....--.+.+|.+.
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~-pR----------sshq~va~~s~----~l~~-fGGEfaSPnq~qF~HYkD~W~fd~~ 162 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPP-PR----------SSHQAVAVPSN----ILWL-FGGEFASPNQEQFHHYKDLWLFDLK 162 (521)
T ss_pred eeeEEeccccceeEeccCCCcC-CC----------ccceeEEeccC----eEEE-eccccCCcchhhhhhhhheeeeeec
Confidence 789999999999987 33322 32 11222223322 2222 1111 0011113367889999
Q ss_pred CCceeEeeec-ccccceeccccccCeEEC------ceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCc
Q 016291 202 TDSWRKVNIN-LFAAGICFLQRLESLYFN------RAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSR 274 (392)
Q Consensus 202 ~~~Wr~~~~~-~~~~~~~~~~~~~~v~~~------G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~ 274 (392)
+..|..+... .|.+. ...+.|... |-||=...+. .--+-+.+||+.+=+|+.+..+......+-. .
T Consensus 163 trkweql~~~g~PS~R----SGHRMvawK~~lilFGGFhd~nr~y--~YyNDvy~FdLdtykW~Klepsga~PtpRSG-c 235 (521)
T KOG1230|consen 163 TRKWEQLEFGGGPSPR----SGHRMVAWKRQLILFGGFHDSNRDY--IYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG-C 235 (521)
T ss_pred cchheeeccCCCCCCC----ccceeEEeeeeEEEEcceecCCCce--EEeeeeEEEeccceeeeeccCCCCCCCCCCc-c
Confidence 9999998843 22221 122223222 2233222111 0113589999999999998765421111111 2
Q ss_pred eEEEe-CCeEEEEE-ec------CCC-CCCeEEEEEEeeeC---CCCceeEEEEeeC--CCCcccceEEecCCeEEEEeC
Q 016291 275 ELIVL-NESLAFVL-HD------ASA-VQSLMEIWIMDEVG---VKAKWKKLLTIEG--NSRLQKPLVFWKSDELVMEDK 340 (392)
Q Consensus 275 ~L~~~-~g~L~l~~-~~------~~~-~~~~i~iW~l~~~~---~~~~W~~~~~i~~--~~~~~~p~~~~~~~~il~~~~ 340 (392)
++.+. .|.+.+.. |. +.+ ...+-++|.|+... ++..|.++..+.. .....-.++++++++-+++..
T Consensus 236 q~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGG 315 (521)
T KOG1230|consen 236 QFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGG 315 (521)
T ss_pred eEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecc
Confidence 44444 67776651 11 111 44567999999542 2456777776553 222334466676655444311
Q ss_pred ---------------CCeEEEEECCCCCEEEeeecc
Q 016291 341 ---------------TGKFCRYNLRTGEIKDLPVRR 361 (392)
Q Consensus 341 ---------------~~~~~~ydl~t~~~~~v~~~~ 361 (392)
...++.||+..++|.+.++++
T Consensus 316 V~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~ 351 (521)
T KOG1230|consen 316 VCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG 351 (521)
T ss_pred eecccccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence 125899999999998877653
No 28
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.44 E-value=0.15 Score=48.31 Aligned_cols=139 Identities=13% Similarity=0.063 Sum_probs=78.1
Q ss_pred ceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE-EecCCCCCCCCcEEEEEeC--CCCc
Q 016291 128 VKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL-YFIDNPGCESPIKVEMYTL--STDS 204 (392)
Q Consensus 128 ~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~-~~~~~~~~~~~~~~~vyss--~~~~ 204 (392)
+.+.++||.|.+|..+++++..++ . ......++. |++.+. .... ......+++|.. +++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r------~---~~~~~~~~~-----~iyv~GG~~~~---~~~~~~~~~y~~~~~~~~ 230 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGT------A---GSAIVHKGN-----KLLLINGEIKP---GLRTAEVKQYLFTGGKLE 230 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcC------C---CceEEEECC-----EEEEEeeeeCC---CccchheEEEEecCCCce
Confidence 368999999999999987653121 1 111112221 555553 1111 011234555554 6679
Q ss_pred eeEeeecccccc---eeccccccCeEECceEEEEeecCCCC-----------------CceEEEEEEcCCceEeEE-cCC
Q 016291 205 WRKVNINLFAAG---ICFLQRLESLYFNRAFHWMAWGDFHE-----------------SDSFILSFDISDETFKKI-AGP 263 (392)
Q Consensus 205 Wr~~~~~~~~~~---~~~~~~~~~v~~~G~lywl~~~~~~~-----------------~~~~il~fD~~~e~~~~i-~~P 263 (392)
|..+.. ++... +........+.++|.+|.+....... ....+-+||+++++|+.+ ++|
T Consensus 231 W~~~~~-m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 231 WNKLPP-LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred eeecCC-CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 998762 22111 00001112567899999988643100 013577999999999876 455
Q ss_pred CcccccCCCCceEEEeCCeEEEEEec
Q 016291 264 SSTLNARKDSRELIVLNESLAFVLHD 289 (392)
Q Consensus 264 ~~~~~~~~~~~~L~~~~g~L~l~~~~ 289 (392)
.. ......+.++|+|.++.-.
T Consensus 310 ~~-----~~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 310 QG-----LAYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred CC-----ceeeEEEEcCCEEEEEecc
Confidence 42 2223556789999998543
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.18 E-value=0.0024 Score=57.98 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=39.9
Q ss_pred CCCCc----HHHHHHHHhcCCccccccccccchhhhhhhCChHHHHHHh
Q 016291 4 FSDLP----EELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVKQL 48 (392)
Q Consensus 4 ~~~LP----~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~F~~~~~ 48 (392)
+..|| +++.+.||+.|...+|..|..|||+|+++++++..-++..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 45789 9999999999999999999999999999999987665543
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.12 E-value=0.7 Score=45.95 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=117.7
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.++|+|-.++.|.........|.+.. .. .....+ + +++.+. ...........++.|+..++.|+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~--g~---~~~~~~------~-~l~lfG--G~~~~~~~~~~l~~~d~~t~~W~~l 154 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRY--GH---SLSAVG------D-KLYLFG--GTDKKYRNLNELHSLDLSTRTWSLL 154 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccc--ce---eEEEEC------C-eEEEEc--cccCCCCChhheEeccCCCCcEEEe
Confidence 49999999988888765444331111 11 111111 1 333332 2111122356899999999999987
Q ss_pred eec--ccccceeccccccCeEECceEEEEeecCCCC-CceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEE
Q 016291 209 NIN--LFAAGICFLQRLESLYFNRAFHWMAWGDFHE-SDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAF 285 (392)
Q Consensus 209 ~~~--~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l 285 (392)
... +|.. ......+..+-.+|......... ....+.+||+++.+|..+........ .+.....+..++++++
T Consensus 155 ~~~~~~P~~----r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~-pR~gH~~~~~~~~~~v 229 (482)
T KOG0379|consen 155 SPTGDPPPP----RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS-PRYGHAMVVVGNKLLV 229 (482)
T ss_pred cCcCCCCCC----cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC-CCCCceEEEECCeEEE
Confidence 622 1222 12233344445666665544332 46789999999999998865432111 1112255677888888
Q ss_pred EEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC--CCcccceEEecCCeEEEEeC--------CCeEEEEECCCCCEE
Q 016291 286 VLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN--SRLQKPLVFWKSDELVMEDK--------TGKFCRYNLRTGEIK 355 (392)
Q Consensus 286 ~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~--~~~~~p~~~~~~~~il~~~~--------~~~~~~ydl~t~~~~ 355 (392)
+.-........=++|.++-.. .+|.++....-. ....+... ..++.++++.. -..++.||+++..|.
T Consensus 230 ~gG~~~~~~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EeccccCCceecceEeeeccc--ceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCccccccccccccccccccccee
Confidence 743321123345899998653 677754433311 12233333 33344444421 235789999999998
Q ss_pred Eeeecc
Q 016291 356 DLPVRR 361 (392)
Q Consensus 356 ~v~~~~ 361 (392)
.+....
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 876544
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.06 E-value=0.0029 Score=57.05 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHhcCC-----ccccccccccchhhhhhhCChHHHHHHhh
Q 016291 4 FSDLPEELVVEILAYLP-----ADSLMRFKCVQKSWYSLIAKPKFVVKQLC 49 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP-----~~sl~r~r~VCK~W~~li~~p~F~~~~~~ 49 (392)
+..||||+|.+||.+.= ..+|.++.+|||.|+-...+|.|-+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 46899999999998765 49999999999999999999999876544
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.98 E-value=0.19 Score=44.56 Aligned_cols=141 Identities=9% Similarity=0.141 Sum_probs=83.9
Q ss_pred CcEEEEEeCCCCceeEeeec-ccccceeccccccCeEECceEEEEeecCCC---------CCceEEEEEEcCCceEeEEc
Q 016291 192 PIKVEMYTLSTDSWRKVNIN-LFAAGICFLQRLESLYFNRAFHWMAWGDFH---------ESDSFILSFDISDETFKKIA 261 (392)
Q Consensus 192 ~~~~~vyss~~~~Wr~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---------~~~~~il~fD~~~e~~~~i~ 261 (392)
...+++++..|..||.+... .|+.. --...++..+|.+|-+..+... .-...|++||++|+.|...
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~Pprw---RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~- 231 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRW---RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT- 231 (392)
T ss_pred hccceeEeccceeeeehhccCCCchh---hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC-
Confidence 44678888899999998732 22211 1234556678999999876542 2235799999999999865
Q ss_pred CCCcccc-cCCCCceEEEeCCeEEEEEe-cCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCC-cccceEEecCCeEEEE
Q 016291 262 GPSSTLN-ARKDSRELIVLNESLAFVLH-DASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSR-LQKPLVFWKSDELVME 338 (392)
Q Consensus 262 ~P~~~~~-~~~~~~~L~~~~g~L~l~~~-~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~-~~~p~~~~~~~~il~~ 338 (392)
|+.... ..+.+..-.+++|++.++.- .-.....--++|..+.. ...|.++..=..... .++-.++-.+++++++
T Consensus 232 -p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LF 308 (392)
T KOG4693|consen 232 -PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGKVYLF 308 (392)
T ss_pred -CCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCEEEEe
Confidence 221100 01122255688999998832 21112334578888754 467988764332222 2334445456677666
Q ss_pred e
Q 016291 339 D 339 (392)
Q Consensus 339 ~ 339 (392)
.
T Consensus 309 G 309 (392)
T KOG4693|consen 309 G 309 (392)
T ss_pred c
Confidence 4
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.24 E-value=2.4 Score=42.13 Aligned_cols=185 Identities=16% Similarity=0.106 Sum_probs=105.5
Q ss_pred EEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCC-CCCceEEEEEEcCCceEeEEcCCCcccccCCC
Q 016291 194 KVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDF-HESDSFILSFDISDETFKKIAGPSSTLNARKD 272 (392)
Q Consensus 194 ~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~ 272 (392)
.+.++..++..|......-.... .......+.++..||.+..... ......|-+||+.|.+|..+..-..... ...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~--~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~-~r~ 165 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPS--PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP-PRA 165 (482)
T ss_pred eeEEeecCCcccccccccCCCCC--cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC-Ccc
Confidence 58888888888976652211111 1233456777888888876652 1223479999999999997742111000 122
Q ss_pred CceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCC--cccceEEecCCeEEEEeCC------CeE
Q 016291 273 SRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSR--LQKPLVFWKSDELVMEDKT------GKF 344 (392)
Q Consensus 273 ~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~--~~~p~~~~~~~~il~~~~~------~~~ 344 (392)
....+..+.+|.+..-........-++|+++-. ...|.++.+.+.... ..+-+++.++.-+++...+ ..+
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~ 243 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDV 243 (482)
T ss_pred cceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecce
Confidence 224455566666663322112357799999865 366999998875432 3445555544333333222 158
Q ss_pred EEEECCCCCEEEeeecccc----ceeeEEEEecceeccccCCe
Q 016291 345 CRYNLRTGEIKDLPVRRRL----RKYSAVNYLSSLVSVRAGNK 383 (392)
Q Consensus 345 ~~ydl~t~~~~~v~~~~~~----~~~~~~~y~~sl~~~~~~~~ 383 (392)
..+|+.+.+|+.+...+.. ........-+.++-++|+..
T Consensus 244 ~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~ 286 (482)
T KOG0379|consen 244 HILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTD 286 (482)
T ss_pred EeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcc
Confidence 9999999888865543311 22233344445555554433
No 34
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.83 E-value=3.7 Score=41.32 Aligned_cols=43 Identities=30% Similarity=0.545 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHhcCCccccccccccchhhhhhhCChHHHHH
Q 016291 4 FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPKFVVK 46 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~F~~~ 46 (392)
+..||.++...||..|+++++++++.||+.|+.+..+.....+
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 5679999999999999999999999999999999998877654
No 35
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.27 E-value=0.47 Score=37.99 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=53.7
Q ss_pred EEEEEEcCCc--eEeEEcCCCcccccCC---------CCceEEEeCCeEEEEEecCC------CCCCeEEEEEEeee-CC
Q 016291 246 FILSFDISDE--TFKKIAGPSSTLNARK---------DSRELIVLNESLAFVLHDAS------AVQSLMEIWIMDEV-GV 307 (392)
Q Consensus 246 ~il~fD~~~e--~~~~i~~P~~~~~~~~---------~~~~L~~~~g~L~l~~~~~~------~~~~~i~iW~l~~~-~~ 307 (392)
.|+.+|+-.+ .++.|++|..+..... ..+.+...+|+|.++..... .....+.+|+|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5889998866 6788999987643211 22377789999999855432 24668999999985 23
Q ss_pred CCceeEEEEeeC
Q 016291 308 KAKWKKLLTIEG 319 (392)
Q Consensus 308 ~~~W~~~~~i~~ 319 (392)
...|.+-+++..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 678999998874
No 36
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.65 E-value=2.3 Score=38.22 Aligned_cols=130 Identities=15% Similarity=0.243 Sum_probs=75.7
Q ss_pred cccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccCC-------CCceEEEeCCeEEEEEecCC
Q 016291 220 LQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNARK-------DSRELIVLNESLAFVLHDAS 291 (392)
Q Consensus 220 ~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~-------~~~~L~~~~g~L~l~~~~~~ 291 (392)
+.....|..||.||...... ..|+.||+.+++.. ...+|........ ....|++-+..|=++....
T Consensus 69 ~~GtG~vVYngslYY~~~~s-----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~- 142 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKYNS-----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE- 142 (250)
T ss_pred eccCCeEEECCcEEEEecCC-----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC-
Confidence 34556688999999988643 58999999999998 7888875332101 0125555555665553321
Q ss_pred CCCCeEEEEEEeee--CCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCC----C-eEEEEECCCCCEEEeeec
Q 016291 292 AVQSLMEIWIMDEV--GVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKT----G-KFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 292 ~~~~~i~iW~l~~~--~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~----~-~~~~ydl~t~~~~~v~~~ 360 (392)
.....|-|-.|+.. ..+..|.-- +. ...... +|--+|.++..... . -.++||+.+++-+.+.+.
T Consensus 143 ~~~g~ivvskld~~tL~v~~tw~T~--~~-k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 143 DNNGNIVVSKLDPETLSVEQTWNTS--YP-KRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CCCCcEEEEeeCcccCceEEEEEec--cC-chhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 12335777777654 223345421 11 111122 23334565555432 2 358999999988877764
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=93.34 E-value=1.6 Score=41.40 Aligned_cols=137 Identities=11% Similarity=0.115 Sum_probs=80.4
Q ss_pred EEEEEeCCCCceeEeeecc-cccceeccccccCeEECceEEEEeecCCCC------CceEEEEEEcCCceEeEEcCCCcc
Q 016291 194 KVEMYTLSTDSWRKVNINL-FAAGICFLQRLESLYFNRAFHWMAWGDFHE------SDSFILSFDISDETFKKIAGPSST 266 (392)
Q Consensus 194 ~~~vyss~~~~Wr~~~~~~-~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~il~fD~~~e~~~~i~~P~~~ 266 (392)
.+.+|+.+++.|+.+..+- |+.. ...+..|.-.|.+|.+...-.+. ..--+..||+.+.+|..+.++...
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pR---sshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPR---SSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCC---ccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 5678889999999987442 2221 22233344447666655443331 122488999999999999887632
Q ss_pred cccCCCCceEEEeCCeEEEEE-ecCCCCCC---eEEEEEEeeeCCCCceeEEEEee--CCCCcccceEEecCCeEEEE
Q 016291 267 LNARKDSRELIVLNESLAFVL-HDASAVQS---LMEIWIMDEVGVKAKWKKLLTIE--GNSRLQKPLVFWKSDELVME 338 (392)
Q Consensus 267 ~~~~~~~~~L~~~~g~L~l~~-~~~~~~~~---~i~iW~l~~~~~~~~W~~~~~i~--~~~~~~~p~~~~~~~~il~~ 338 (392)
.. +.-...+..+.+|.|+. +.++ ... -=+||+.+-+ ...|.++..=. |...-..-+.+.++|.|++.
T Consensus 176 S~--RSGHRMvawK~~lilFGGFhd~-nr~y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 176 SP--RSGHRMVAWKRQLILFGGFHDS-NRDYIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred CC--CccceeEEeeeeEEEEcceecC-CCceEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 21 11126778888998882 2221 111 1277877754 47899987522 22111233555667777776
No 38
>PF13964 Kelch_6: Kelch motif
Probab=92.69 E-value=0.26 Score=31.92 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=31.6
Q ss_pred ccCeEECceEEEEeecCC-CCCceEEEEEEcCCceEeEEc
Q 016291 223 LESLYFNRAFHWMAWGDF-HESDSFILSFDISDETFKKIA 261 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~e~~~~i~ 261 (392)
...|.++|.+|.+..... ......+..||+++.+|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 356889999999987764 344578999999999999874
No 39
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.69 E-value=8 Score=33.86 Aligned_cols=139 Identities=11% Similarity=0.052 Sum_probs=76.8
Q ss_pred EEEEEeCCCC--ceeEeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccC
Q 016291 194 KVEMYTLSTD--SWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNAR 270 (392)
Q Consensus 194 ~~~vyss~~~--~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~ 270 (392)
.+..++..+| .|+.--.+ ... .....++.-+|.+|-..... .|.++|..+++.. ...+|....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~-~~~----~~~~~~~~~~~~v~~~~~~~------~l~~~d~~tG~~~W~~~~~~~~~--- 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP-GIG----GPVATAVPDGGRVYVASGDG------NLYALDAKTGKVLWRFDLPGPIS--- 69 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS-SCS----SEEETEEEETTEEEEEETTS------EEEEEETTTSEEEEEEECSSCGG---
T ss_pred EEEEEECCCCCEEEEEECCC-CCC----CccceEEEeCCEEEEEcCCC------EEEEEECCCCCEEEEeecccccc---
Confidence 4566776665 47763211 000 00112344778888775444 8999999776543 345554321
Q ss_pred CCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeE-EEEeeCCCCcccceEE-ecCCeEEEEeCCCeEEEEE
Q 016291 271 KDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKK-LLTIEGNSRLQKPLVF-WKSDELVMEDKTGKFCRYN 348 (392)
Q Consensus 271 ~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~-~~~i~~~~~~~~p~~~-~~~~~il~~~~~~~~~~yd 348 (392)
......++.+++... .. .|+.++-...+..|.. ...-+... ...+... ..++.+++...++.++.+|
T Consensus 70 ---~~~~~~~~~v~v~~~-----~~--~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 70 ---GAPVVDGGRVYVGTS-----DG--SLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp ---SGEEEETTEEEEEET-----TS--EEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred ---ceeeecccccccccc-----ee--eeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEe
Confidence 123566777766542 22 6777773323678884 43322222 2222222 2345666666688999999
Q ss_pred CCCCCEEEe
Q 016291 349 LRTGEIKDL 357 (392)
Q Consensus 349 l~t~~~~~v 357 (392)
+++++..+-
T Consensus 139 ~~tG~~~w~ 147 (238)
T PF13360_consen 139 PKTGKLLWK 147 (238)
T ss_dssp TTTTEEEEE
T ss_pred cCCCcEEEE
Confidence 999987543
No 40
>smart00284 OLF Olfactomedin-like domains.
Probab=91.53 E-value=7.2 Score=35.01 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=75.3
Q ss_pred cccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcc-cc---c---CCCCceEEEeCCeEEEEEecCC
Q 016291 220 LQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSST-LN---A---RKDSRELIVLNESLAFVLHDAS 291 (392)
Q Consensus 220 ~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~-~~---~---~~~~~~L~~~~g~L~l~~~~~~ 291 (392)
+.....|..||.||...... ..|+.||+.+++.. ...+|... +. + ......|++-+..|=++-...
T Consensus 74 ~~GtG~VVYngslYY~~~~s-----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~- 147 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFNS-----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATE- 147 (255)
T ss_pred cccccEEEECceEEEEecCC-----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEecc-
Confidence 34566789999999966443 57999999999986 44577521 11 0 011126766666676652221
Q ss_pred CCCCeEEEEEEeee--CCCCceeEEEEeeCCCCcccceEEecCCeEEEEeC----CC-eEEEEECCCCCEEEeeec
Q 016291 292 AVQSLMEIWIMDEV--GVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDK----TG-KFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 292 ~~~~~i~iW~l~~~--~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~----~~-~~~~ydl~t~~~~~v~~~ 360 (392)
.....|-|-.|+.. +.++.|.--+ + ...... +|--+|.++.... +. -.++||..|++-+.+.+.
T Consensus 148 ~~~g~ivvSkLnp~tL~ve~tW~T~~--~-k~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 148 QNAGKIVISKLNPATLTIENTWITTY--N-KRSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCCCCEEEEeeCcccceEEEEEEcCC--C-cccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 13566888888764 2234454311 1 111122 2223456555542 22 368999999887776654
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.95 E-value=5.7 Score=37.05 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=101.3
Q ss_pred cEEEEEeCCCCceeEeeecccccceeccccccCeEECc-eEEEEeecCCC------------------------------
Q 016291 193 IKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNR-AFHWMAWGDFH------------------------------ 241 (392)
Q Consensus 193 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~------------------------------ 241 (392)
..+..|+..+++|..+++..|.. .....++..++ .+|++..-...
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~g----l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~ 188 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTG----LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKK 188 (381)
T ss_pred eeeEEecCCCChhheeccccccc----cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCC
Confidence 36788999999999998654433 22334444444 66666543310
Q ss_pred ----CCceEEEEEEcCCceEeEEc-CCCcccccCCCCc-eEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEE
Q 016291 242 ----ESDSFILSFDISDETFKKIA-GPSSTLNARKDSR-ELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLL 315 (392)
Q Consensus 242 ----~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~-~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~ 315 (392)
..-..+++||+.+.+|+..- .|.- ..+. ..+..+.+|.++.-+.-+.-..-++|..+-.++...|.++-
T Consensus 189 ~~dy~~n~ev~sy~p~~n~W~~~G~~pf~-----~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 189 AEDYFFNKEVLSYDPSTNQWRNLGENPFY-----GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred HHHhcccccccccccccchhhhcCcCccc-----CccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 22235899999999999874 6652 2222 33444556777743322245566777766554568899987
Q ss_pred EeeCCCCc--ccceE-Ee--cCCeEEEE-------------------eC------CCeEEEEECCCCCEEEeeecccc-c
Q 016291 316 TIEGNSRL--QKPLV-FW--KSDELVME-------------------DK------TGKFCRYNLRTGEIKDLPVRRRL-R 364 (392)
Q Consensus 316 ~i~~~~~~--~~p~~-~~--~~~~il~~-------------------~~------~~~~~~ydl~t~~~~~v~~~~~~-~ 364 (392)
.++....- ....+ +. .++++++. +. ..+++.+| .+.|+.++..... .
T Consensus 264 ~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~ 341 (381)
T COG3055 264 DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA 341 (381)
T ss_pred CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc
Confidence 66543211 11110 10 12233222 11 22577777 8899988764432 2
Q ss_pred eeeEEEEecceecccc
Q 016291 365 KYSAVNYLSSLVSVRA 380 (392)
Q Consensus 365 ~~~~~~y~~sl~~~~~ 380 (392)
+--...|-+.++.++|
T Consensus 342 YG~s~~~nn~vl~IGG 357 (381)
T COG3055 342 YGVSLSYNNKVLLIGG 357 (381)
T ss_pred ceEEEecCCcEEEEcc
Confidence 2267777788877763
No 42
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.44 E-value=9.3 Score=33.63 Aligned_cols=123 Identities=11% Similarity=0.172 Sum_probs=67.4
Q ss_pred EECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCC-CceEEE--eCC--eEEEEEecCC-CCCCeEEEE
Q 016291 227 YFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKD-SRELIV--LNE--SLAFVLHDAS-AVQSLMEIW 300 (392)
Q Consensus 227 ~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~-~~~L~~--~~g--~L~l~~~~~~-~~~~~i~iW 300 (392)
.+||-+ ++... ..++..|+.|+++..++.|+........ ...++- ..+ |+..+..... .....++|+
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 468877 44433 3799999999999998766531100110 011211 112 3322222100 023467777
Q ss_pred EEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCC------eEEEEECCCCCEEE-eeecc
Q 016291 301 IMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTG------KFCRYNLRTGEIKD-LPVRR 361 (392)
Q Consensus 301 ~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~------~~~~ydl~t~~~~~-v~~~~ 361 (392)
.++. .+|.......+....... ++.-+|.++++.... .++.||+++.++++ +..+.
T Consensus 76 s~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~ 138 (230)
T TIGR01640 76 TLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPC 138 (230)
T ss_pred EeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCc
Confidence 7764 479987632221111222 455567777764311 69999999999995 76653
No 43
>PF13964 Kelch_6: Kelch motif
Probab=89.44 E-value=0.7 Score=29.82 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.8
Q ss_pred ceEEEEcCcccccccCCCCCC
Q 016291 128 VKVILCNSATREFRELPVSCF 148 (392)
Q Consensus 128 ~~~~V~NP~T~~~~~LP~~~~ 148 (392)
+.+.++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 489999999999999998764
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.24 E-value=1.3 Score=28.02 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=31.7
Q ss_pred ccCeEECceEEEEeecCC-CCCceEEEEEEcCCceEeEEc
Q 016291 223 LESLYFNRAFHWMAWGDF-HESDSFILSFDISDETFKKIA 261 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~e~~~~i~ 261 (392)
...+.++|.+|-+..... ......+..||+.+.+|..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 356789999999997664 455678999999999999763
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=88.13 E-value=1.4 Score=28.31 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=31.2
Q ss_pred ccCeEECceEEEEeec---CCCCCceEEEEEEcCCceEeEEcC
Q 016291 223 LESLYFNRAFHWMAWG---DFHESDSFILSFDISDETFKKIAG 262 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~---~~~~~~~~il~fD~~~e~~~~i~~ 262 (392)
...+..++++|.+... ........+-.||+++.+|+.+..
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 3467889999999877 333556789999999999998754
No 46
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.78 E-value=13 Score=35.86 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=67.0
Q ss_pred ccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccC-----CCCceEEEeCCeEEEEEecCCCCCCe
Q 016291 223 LESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNAR-----KDSRELIVLNESLAFVLHDASAVQSL 296 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~-----~~~~~L~~~~g~L~l~~~~~~~~~~~ 296 (392)
..++..+|.+|.....+ .+.+||.++++-. ...++....... ......+..+|++.+... ..
T Consensus 63 ~sPvv~~~~vy~~~~~g------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-----~g- 130 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-----KG- 130 (394)
T ss_pred eccEEECCEEEEECCCC------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-----CC-
Confidence 36688899999987665 7999999866533 233333100000 001134555677765322 22
Q ss_pred EEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEECCCCCEEEe
Q 016291 297 MEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDL 357 (392)
Q Consensus 297 i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~~~~~v 357 (392)
.+..++....+..|+... +. .....|... ++.+++...++.++.+|.+|++..+-
T Consensus 131 -~l~ald~~tG~~~W~~~~--~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 131 -QVYALNAEDGEVAWQTKV--AG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWT 185 (394)
T ss_pred -EEEEEECCCCCCcccccC--CC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 355566433367787643 11 112334433 46676666677899999999987653
No 47
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.62 E-value=28 Score=33.65 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=62.6
Q ss_pred EECceEEEEeecCCCCCceEEEEEEcCCce---EeEEcCCCcccccCCCC-ceEEEeCCeEEEEEecCCCCCCeEEEEEE
Q 016291 227 YFNRAFHWMAWGDFHESDSFILSFDISDET---FKKIAGPSSTLNARKDS-RELIVLNESLAFVLHDASAVQSLMEIWIM 302 (392)
Q Consensus 227 ~~~G~lywl~~~~~~~~~~~il~fD~~~e~---~~~i~~P~~~~~~~~~~-~~L~~~~g~L~l~~~~~~~~~~~i~iW~l 302 (392)
+.++.+|.++... .....|++.|+.+.. |..+-.|+. .... ..+...++.|.+....+ ....+.++-+
T Consensus 285 ~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~Lvl~~~~~--~~~~l~v~~~ 356 (414)
T PF02897_consen 285 HHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPED----EDVSLEDVSLFKDYLVLSYREN--GSSRLRVYDL 356 (414)
T ss_dssp EETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--S----SSEEEEEEEEETTEEEEEEEET--TEEEEEEEET
T ss_pred ccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCC----CceeEEEEEEECCEEEEEEEEC--CccEEEEEEC
Confidence 3477888887643 345799999998765 554434431 1111 14456678887765553 3445555554
Q ss_pred eeeCCCCceeEEEEeeCCCCcccceEEe---cCCeEEEEeC----CCeEEEEECCCCCEEEee
Q 016291 303 DEVGVKAKWKKLLTIEGNSRLQKPLVFW---KSDELVMEDK----TGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 303 ~~~~~~~~W~~~~~i~~~~~~~~p~~~~---~~~~il~~~~----~~~~~~ydl~t~~~~~v~ 358 (392)
+ ..|.... ++.... .....+. .++++.|... -..++.||+++++.+.+.
T Consensus 357 ~-----~~~~~~~-~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 357 D-----DGKESRE-IPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp T------TEEEEE-EESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred C-----CCcEEee-ecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 4 1244443 322211 1112222 2345555432 237999999999998775
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.51 E-value=16 Score=35.38 Aligned_cols=166 Identities=14% Similarity=0.194 Sum_probs=89.4
Q ss_pred CcEEEEEeCCCCceeEeeecccccceeccccccCeE--ECceEEEEeecCCCCCceEEEEEEcCCceE-eEE---cCCCc
Q 016291 192 PIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLY--FNRAFHWMAWGDFHESDSFILSFDISDETF-KKI---AGPSS 265 (392)
Q Consensus 192 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~il~fD~~~e~~-~~i---~~P~~ 265 (392)
..++.+|++.+.+=+..-... -..-.++. -+|.|...+... ..+-.||+.+... +.+ ..|-+
T Consensus 47 S~rvqly~~~~~~~~k~~srF-------k~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~ 114 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRF-------KDVVYSVDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVH 114 (487)
T ss_pred ccEEEEEecchhhhhhhHHhh-------ccceeEEEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCcee
Confidence 568999999886533211110 11112333 458887776543 4789999665221 112 22221
Q ss_pred ccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEec-CCeEEEE-eCCCe
Q 016291 266 TLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWK-SDELVME-DKTGK 343 (392)
Q Consensus 266 ~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~-~~~il~~-~~~~~ 343 (392)
. .+....++.+.+.+ + .+....+|.+... . + ...|.--...-+-..+.+ ++-|++. ..|+.
T Consensus 115 ~-------~~f~~~d~t~l~s~-s---Dd~v~k~~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 115 V-------TKFSPQDNTMLVSG-S---DDKVVKYWDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred E-------EEecccCCeEEEec-C---CCceEEEEEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 1 13334455554433 3 3788999998864 2 2 333432222222223333 3445554 35788
Q ss_pred EEEEECCCCCEEEeeec-cccceeeEEEEecc--eeccccCCeeeccc
Q 016291 344 FCRYNLRTGEIKDLPVR-RRLRKYSAVNYLSS--LVSVRAGNKLDLGN 388 (392)
Q Consensus 344 ~~~ydl~t~~~~~v~~~-~~~~~~~~~~y~~s--l~~~~~~~~~~~~~ 388 (392)
+-.||.++..-+.+.+. +.+- ..+.|.+| ++-.-||+++.|-+
T Consensus 178 vrl~DtR~~~~~v~elnhg~pV--e~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHGCPV--ESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred EEEEEeccCCceeEEecCCCce--eeEEEcCCCCEEEEcCCCeEEEEE
Confidence 99999999872223332 3322 55666654 77777888887743
No 49
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=87.15 E-value=27 Score=32.95 Aligned_cols=152 Identities=13% Similarity=0.209 Sum_probs=82.2
Q ss_pred CcEEEEEeCCCCc--eeEee-ecccccceeccccccCeEE--Cce-EEEEeecCCCCCceEEEEEEcC--CceEeEE---
Q 016291 192 PIKVEMYTLSTDS--WRKVN-INLFAAGICFLQRLESLYF--NRA-FHWMAWGDFHESDSFILSFDIS--DETFKKI--- 260 (392)
Q Consensus 192 ~~~~~vyss~~~~--Wr~~~-~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~il~fD~~--~e~~~~i--- 260 (392)
...+.+|....+. ..... ...+.+. .++.+.+ +|. +|...... ..|.+|++. +..+..+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~-----GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGS-----GPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTS-----SEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCC-----CCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEe
Confidence 4578888887655 54422 2222221 1222222 564 56655433 577777777 6666654
Q ss_pred -cCCCcccccCCCCceEE-EeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEE
Q 016291 261 -AGPSSTLNARKDSRELI-VLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVME 338 (392)
Q Consensus 261 -~~P~~~~~~~~~~~~L~-~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~ 338 (392)
.+|...... .....+. .-+|+..++... ....|.++.++... ..-.++..++......+-+.+.++|+.++.
T Consensus 235 ~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr---~~~sI~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 235 STLPEGFTGE-NAPAEIAISPDGRFLYVSNR---GSNSISVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp ESCETTSCSS-SSEEEEEE-TTSSEEEEEEC---TTTEEEEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred eecccccccc-CCceeEEEecCCCEEEEEec---cCCEEEEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 244432110 0112443 336777666544 47889999886432 344555555532222345667788886665
Q ss_pred e--CCCeEEEE--ECCCCCEEEeee
Q 016291 339 D--KTGKFCRY--NLRTGEIKDLPV 359 (392)
Q Consensus 339 ~--~~~~~~~y--dl~t~~~~~v~~ 359 (392)
. .++.+..| |.++++++.+..
T Consensus 309 a~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCeEEEEEEeCCCCcEEEecc
Confidence 3 35567666 567888988763
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.20 E-value=0.31 Score=46.24 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHhcCCccccccccccchhhhhhhCChH
Q 016291 4 FSDLPEELVVEILAYLPADSLMRFKCVQKSWYSLIAKPK 42 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK~W~~li~~p~ 42 (392)
.-.||.+++..||+.|..+++.|++.+||.|+-+..|..
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 347999999999999999999999999999998887754
No 51
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=85.79 E-value=23 Score=30.87 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=90.7
Q ss_pred ccceEEEEEcCceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEE
Q 016291 117 CHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVE 196 (392)
Q Consensus 117 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 196 (392)
.+|.+++....+.++.+|+.||+...--..+. + . ...... + .=+|++.. . ...+.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~-------~---~~~~~~-~----~~~v~v~~--~-------~~~l~ 89 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-P-------I---SGAPVV-D----GGRVYVGT--S-------DGSLY 89 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS-C-------G---GSGEEE-E----TTEEEEEE--T-------TSEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-c-------c---cceeee-c----cccccccc--c-------eeeeE
Confidence 67777777666799999999998765322211 0 0 000011 1 11232221 1 12566
Q ss_pred EEeCCCC--ceeE-eeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcC--CCccccc-
Q 016291 197 MYTLSTD--SWRK-VNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAG--PSSTLNA- 269 (392)
Q Consensus 197 vyss~~~--~Wr~-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~--P~~~~~~- 269 (392)
.++..+| .|+. ........ ..........++.+|.....+ .|.++|+++++-. ..+. |......
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g------~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAG---VRSSSSPAVDGDRLYVGTSSG------KLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCS---TB--SEEEEETTEEEEEETCS------EEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred ecccCCcceeeeeccccccccc---cccccCceEecCEEEEEeccC------cEEEEecCCCcEEEEeecCCCCCCccee
Confidence 6665555 5884 33211111 011222233355666655454 8999999987642 2233 3211000
Q ss_pred --CCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEE
Q 016291 270 --RKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRY 347 (392)
Q Consensus 270 --~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~y 347 (392)
......++..+|.+++...+ ...+.+ -++ ..+..|.+. +.. ........++.+++...+++++++
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~----g~~~~~-d~~--tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 161 SFSDINGSPVISDGRVYVSSGD----GRVVAV-DLA--TGEKLWSKP--ISG----IYSLPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp EETTEEEEEECCTTEEEEECCT----SSEEEE-ETT--TTEEEEEEC--SS-----ECECEECCCTEEEEEETTTEEEEE
T ss_pred eecccccceEEECCEEEEEcCC----CeEEEE-ECC--CCCEEEEec--CCC----ccCCceeeCCEEEEEeCCCEEEEE
Confidence 00011333445655543322 222222 111 112236222 221 111123334555556668899999
Q ss_pred ECCCCCEEEe
Q 016291 348 NLRTGEIKDL 357 (392)
Q Consensus 348 dl~t~~~~~v 357 (392)
|++|++..+.
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 9999988753
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.55 E-value=14 Score=33.47 Aligned_cols=125 Identities=16% Similarity=0.114 Sum_probs=76.5
Q ss_pred CccEEeeccceEEEEEcC-ceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCC
Q 016291 110 LYPFFGHCHGIVCISLRY-VKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPG 188 (392)
Q Consensus 110 ~~~~~~s~~GLl~~~~~~-~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~ 188 (392)
-+-+++.-+|=|-+.... +.+.-.||.++.--++|.+... .... -....|+... +.+. ..
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~-----~~gs-----Rriwsdpig~----~wit-tw---- 251 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNAL-----KAGS-----RRIWSDPIGR----AWIT-TW---- 251 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcc-----cccc-----cccccCccCc----EEEe-cc----
Confidence 345666667766555322 3688899999977778876541 1011 1123344321 1221 11
Q ss_pred CCCCcEEEEEeCCCCceeEeeecccccceeccccccCeEECc-eEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCc
Q 016291 189 CESPIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNR-AFHWMAWGDFHESDSFILSFDISDETFKKIAGPSS 265 (392)
Q Consensus 189 ~~~~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 265 (392)
..-.+..|...+.+|++-..+-. ......++++. ---|+..-+ ...|..||.++++|..+++|..
T Consensus 252 --g~g~l~rfdPs~~sW~eypLPgs------~arpys~rVD~~grVW~sea~----agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 252 --GTGSLHRFDPSVTSWIEYPLPGS------KARPYSMRVDRHGRVWLSEAD----AGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred --CCceeeEeCcccccceeeeCCCC------CCCcceeeeccCCcEEeeccc----cCceeecCcccceEEEecCCCC
Confidence 14578888988889997754321 12345566653 345765433 4689999999999999999874
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.10 E-value=38 Score=31.93 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=73.6
Q ss_pred CceEEEEeecCCCCCceEEEEEEcCCce--Ee---EEcCCCcccccCCCCceEE-EeCCeEEEEEecCCCCCCeEEEEEE
Q 016291 229 NRAFHWMAWGDFHESDSFILSFDISDET--FK---KIAGPSSTLNARKDSRELI-VLNESLAFVLHDASAVQSLMEIWIM 302 (392)
Q Consensus 229 ~G~lywl~~~~~~~~~~~il~fD~~~e~--~~---~i~~P~~~~~~~~~~~~L~-~~~g~L~l~~~~~~~~~~~i~iW~l 302 (392)
+|...|.+..+ ...|..|++..+. +. .+.+|.. ...++++ .-+|+..++..+ ....+.++.+
T Consensus 154 dg~~v~v~dlG----~D~v~~~~~~~~~~~l~~~~~~~~~~G-----~GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~ 221 (345)
T PF10282_consen 154 DGRFVYVPDLG----ADRVYVYDIDDDTGKLTPVDSIKVPPG-----SGPRHLAFSPDGKYAYVVNE---LSNTVSVFDY 221 (345)
T ss_dssp TSSEEEEEETT----TTEEEEEEE-TTS-TEEEEEEEECSTT-----SSEEEEEE-TTSSEEEEEET---TTTEEEEEEE
T ss_pred CCCEEEEEecC----CCEEEEEEEeCCCceEEEeeccccccC-----CCCcEEEEcCCcCEEEEecC---CCCcEEEEee
Confidence 47766666554 4578888887665 43 3466663 2223453 347777777666 4788999887
Q ss_pred eeeCCCCceeEEEEeeCCC-C-----cccceEEecCCeEEEEeC--CCeEEEEEC--CCCCEEEeeec
Q 016291 303 DEVGVKAKWKKLLTIEGNS-R-----LQKPLVFWKSDELVMEDK--TGKFCRYNL--RTGEIKDLPVR 360 (392)
Q Consensus 303 ~~~~~~~~W~~~~~i~~~~-~-----~~~p~~~~~~~~il~~~~--~~~~~~ydl--~t~~~~~v~~~ 360 (392)
+.. ...+....+++... . ...-+.+.++|+.++..+ ...+..|++ ++++++.++..
T Consensus 222 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 222 DPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp ETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred ccc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 743 34788877777541 1 123356778888777644 446888887 56788887653
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=83.35 E-value=40 Score=31.86 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=70.2
Q ss_pred EEeeccceEEEEEcCceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCC--CCCC
Q 016291 113 FFGHCHGIVCISLRYVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDN--PGCE 190 (392)
Q Consensus 113 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~--~~~~ 190 (392)
+.+-.+.-|+..+......|+++.|+....+|.+.. |. . ..+.+.. .+ +++++...... ....
T Consensus 71 F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~-pk-----~----~pisv~V---G~--~LY~m~~~~~~~~~~~~ 135 (342)
T PF07893_consen 71 FFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHS-PK-----R----CPISVSV---GD--KLYAMDRSPFPEPAGRP 135 (342)
T ss_pred EEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCC-CC-----c----ceEEEEe---CC--eEEEeeccCccccccCc
Confidence 333344555555555689999999999999998654 21 1 1111111 11 25555311110 0000
Q ss_pred CCcEEEEEeC----------CCCceeEeeecccccceecc----ccccCeEECceEEEEeecCCCCCceEEEEEEcCCce
Q 016291 191 SPIKVEMYTL----------STDSWRKVNINLFAAGICFL----QRLESLYFNRAFHWMAWGDFHESDSFILSFDISDET 256 (392)
Q Consensus 191 ~~~~~~vyss----------~~~~Wr~~~~~~~~~~~~~~----~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~ 256 (392)
....+|+++. ++.+|+.+..+ |....... ....+|. +|.--|+...+. ...-.+||+++.+
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~ 210 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHE 210 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcc
Confidence 0014555522 23467765432 22111000 2345666 898888865541 1369999999999
Q ss_pred EeEE---cCCC
Q 016291 257 FKKI---AGPS 264 (392)
Q Consensus 257 ~~~i---~~P~ 264 (392)
|+.. .||.
T Consensus 211 W~~~GdW~LPF 221 (342)
T PF07893_consen 211 WRKHGDWMLPF 221 (342)
T ss_pred eeeccceecCc
Confidence 9876 6786
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.82 E-value=36 Score=32.70 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=63.1
Q ss_pred ccCeEECceEEEEeecCCCCCceEEEEEEcCCce--EeEEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEE
Q 016291 223 LESLYFNRAFHWMAWGDFHESDSFILSFDISDET--FKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIW 300 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW 300 (392)
..++..+|.+|.....+ .+.++|+.+++ |+. +.+. ...++..+|.|++...+ . .+.
T Consensus 250 ~sP~v~~~~vy~~~~~g------~l~ald~~tG~~~W~~-~~~~--------~~~~~~~~~~vy~~~~~-----g--~l~ 307 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG------NLVALDLRSGQIVWKR-EYGS--------VNDFAVDGGRIYLVDQN-----D--RVY 307 (394)
T ss_pred CCcEEECCEEEEEEcCC------eEEEEECCCCCEEEee-cCCC--------ccCcEEECCEEEEEcCC-----C--eEE
Confidence 46778899999877665 89999998764 443 2221 01234456666654322 2 233
Q ss_pred EEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEECCCCCEEE
Q 016291 301 IMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKD 356 (392)
Q Consensus 301 ~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~~~~~ 356 (392)
.++-...+..|.... +. ......|.. .+|.|++...++.++++|.+|+++..
T Consensus 308 ald~~tG~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 308 ALDTRGGVELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEECCCCcEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 333322244565321 11 011234443 35778888888899999999998654
No 56
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.65 E-value=34 Score=34.50 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=65.9
Q ss_pred ccCeEECceEEEEeecCCCCCceEEEEEEcCCce--EeEE-cCCCccccc--C-CCCceEEEeCCeEEEEEecCCCCCCe
Q 016291 223 LESLYFNRAFHWMAWGDFHESDSFILSFDISDET--FKKI-AGPSSTLNA--R-KDSRELIVLNESLAFVLHDASAVQSL 296 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~--~~~i-~~P~~~~~~--~-~~~~~L~~~~g~L~l~~~~~~~~~~~ 296 (392)
..++..+|.+|.....+ .|.++|..|++ |+.- ..|...... + ...+.+...+|++.+...+ .
T Consensus 63 stPvv~~g~vyv~s~~g------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-----g- 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-----A- 130 (527)
T ss_pred cCCEEECCEEEEECCCC------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-----C-
Confidence 46788999999876655 79999998764 5432 333221100 0 0112345556666554322 1
Q ss_pred EEEEEEeeeCCCCceeEEEE-eeCCCCc-ccceEEecCCeEEEEeC------CCeEEEEECCCCCEEEe
Q 016291 297 MEIWIMDEVGVKAKWKKLLT-IEGNSRL-QKPLVFWKSDELVMEDK------TGKFCRYNLRTGEIKDL 357 (392)
Q Consensus 297 i~iW~l~~~~~~~~W~~~~~-i~~~~~~-~~p~~~~~~~~il~~~~------~~~~~~ydl~t~~~~~v 357 (392)
.|..++-...+..|..... ....... ..|+.. ++.|++-.. ++.+++||.+|++..+-
T Consensus 131 -~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 -RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred -EEEEEECCCCCEEeecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 4666665433667875431 1111111 234433 345555332 46899999999987653
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.45 E-value=30 Score=32.93 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=60.5
Q ss_pred ccCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEE
Q 016291 223 LESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWI 301 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~ 301 (392)
..++..+|.+|.....+ .|.+||..+++-. ...++.... ...+..++.+.+.. . .. .++.
T Consensus 59 ~~p~v~~~~v~v~~~~g------~v~a~d~~tG~~~W~~~~~~~~~------~~p~v~~~~v~v~~-~----~g--~l~a 119 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG------TVVALDAETGKRLWRVDLDERLS------GGVGADGGLVFVGT-E----KG--EVIA 119 (377)
T ss_pred cceEEECCEEEEECCCC------eEEEEEccCCcEeeeecCCCCcc------cceEEcCCEEEEEc-C----CC--EEEE
Confidence 35677888888877665 7999998776533 345554211 12333344444322 1 12 3444
Q ss_pred EeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEECCCCCEEE
Q 016291 302 MDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKD 356 (392)
Q Consensus 302 l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~~~~~ 356 (392)
++....+..|.... +. .....|.. .++.+++...++.++.+|.++++..+
T Consensus 120 ld~~tG~~~W~~~~--~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 120 LDAEDGKELWRAKL--SS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred EECCCCcEeeeecc--Cc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 55322245675432 10 01122322 34566666667889999999887544
No 58
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.38 E-value=39 Score=31.76 Aligned_cols=121 Identities=18% Similarity=0.271 Sum_probs=66.8
Q ss_pred cCeEEC--ceEEEEeecCCCCCceEEEEEEcCCceEeEE---cCCCcccccCCCCc----eEEEe---CCeEEEEEecCC
Q 016291 224 ESLYFN--RAFHWMAWGDFHESDSFILSFDISDETFKKI---AGPSSTLNARKDSR----ELIVL---NESLAFVLHDAS 291 (392)
Q Consensus 224 ~~v~~~--G~lywl~~~~~~~~~~~il~fD~~~e~~~~i---~~P~~~~~~~~~~~----~L~~~---~g~L~l~~~~~~ 291 (392)
.+++.+ |.+||++..+ .|...|++.+.-... .+-...+.. ..++ ++..+ .|+|.++.....
T Consensus 188 ~~~~~~~~~~~~F~Sy~G------~v~~~dlsg~~~~~~~~~~~~t~~e~~-~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG------NVYSADLSGDSAKFGKPWSLLTDAEKA-DGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp --EEETTTTEEEEEBTTS------EEEEEEETTSSEEEEEEEESS-HHHHH-TTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred ccceECCCCeEEEEecCC------EEEEEeccCCcccccCcccccCccccc-cCcCCcceeeeeeccccCeEEEEecCCC
Confidence 344443 5799988887 899999998865433 221111111 1111 44433 568887743221
Q ss_pred ---CCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCe-EEE-EeC-CCeEEEEECCCCCEEE
Q 016291 292 ---AVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDE-LVM-EDK-TGKFCRYNLRTGEIKD 356 (392)
Q Consensus 292 ---~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~-~~~-~~~~~~ydl~t~~~~~ 356 (392)
-....=+||+++-. .=.++.+|++... ...+.+.++++ +++ ... ++.++.||..|++..+
T Consensus 261 ~gsHKdpgteVWv~D~~----t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLK----THKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TT-TTS-EEEEEEEETT----TTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCccCCceEEEEEECC----CCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 14456799999854 2345666764311 12466777766 444 333 5679999999997543
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=76.72 E-value=52 Score=31.30 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=54.9
Q ss_pred cCeEECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEE
Q 016291 224 ESLYFNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIM 302 (392)
Q Consensus 224 ~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l 302 (392)
.++..+|.+|.-..++ .+.+||.++++-. ...++.... ......++.+.+. .. ...+-. +
T Consensus 100 ~p~v~~~~v~v~~~~g------~l~ald~~tG~~~W~~~~~~~~~------~~p~v~~~~v~v~-~~----~g~l~a--~ 160 (377)
T TIGR03300 100 GVGADGGLVFVGTEKG------EVIALDAEDGKELWRAKLSSEVL------SPPLVANGLVVVR-TN----DGRLTA--L 160 (377)
T ss_pred ceEEcCCEEEEEcCCC------EEEEEECCCCcEeeeeccCceee------cCCEEECCEEEEE-CC----CCeEEE--E
Confidence 3455577777655444 8999999765432 223333211 1112234444332 11 233333 3
Q ss_pred eeeCCCCceeEEEEeeCC--CCcccceEEecCCeEEEEeCCCeEEEEECCCCCEEE
Q 016291 303 DEVGVKAKWKKLLTIEGN--SRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKD 356 (392)
Q Consensus 303 ~~~~~~~~W~~~~~i~~~--~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~~~~~ 356 (392)
+....+..|.....-+.. .....|... ++.+++-..+++++.+|+++++..+
T Consensus 161 d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 161 DAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred EcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 322224556644322111 011233322 3566665667899999999987544
No 60
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=76.52 E-value=35 Score=33.26 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=16.5
Q ss_pred EeCCCeEEEEECCCCCEEEee
Q 016291 338 EDKTGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 338 ~~~~~~~~~ydl~t~~~~~v~ 358 (392)
...+..+..||.++++++++.
T Consensus 378 t~dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 378 TNDGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred ccCCceEEEEecCCceEEEee
Confidence 333448999999999999875
No 61
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.45 E-value=9.8 Score=21.61 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=19.8
Q ss_pred CCeEEEEeCCCeEEEEECCCCCEEE
Q 016291 332 SDELVMEDKTGKFCRYNLRTGEIKD 356 (392)
Q Consensus 332 ~~~il~~~~~~~~~~ydl~t~~~~~ 356 (392)
+|.+++...++.++++|.++++..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4566666778899999999998764
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=74.50 E-value=5.2 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=14.0
Q ss_pred eEEEEcCcccccccCCCCC
Q 016291 129 KVILCNSATREFRELPVSC 147 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~ 147 (392)
.++++|+.|++|.+||++|
T Consensus 30 d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 30 DLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -EEEEETTTTEEEE--SS-
T ss_pred CEEEEECCCCEEEECCCCC
Confidence 7899999999999997765
No 63
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.16 E-value=8.2 Score=23.17 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.1
Q ss_pred eEEEEeCCCeEEEEECCCCCEEEeee
Q 016291 334 ELVMEDKTGKFCRYNLRTGEIKDLPV 359 (392)
Q Consensus 334 ~il~~~~~~~~~~ydl~t~~~~~v~~ 359 (392)
.|++-..++.++++|.+|++..+-..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45556667899999999999876543
No 64
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=73.69 E-value=3.7 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=17.1
Q ss_pred eEEEEcCcccccccCCCCC
Q 016291 129 KVILCNSATREFRELPVSC 147 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~ 147 (392)
.+.++||.|++|..+|+++
T Consensus 29 ~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 29 SVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTTTEEEEEEEES
T ss_pred eEEEEeCCCCEEEEcCCCC
Confidence 8999999999999998763
No 65
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.70 E-value=84 Score=33.33 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=23.9
Q ss_pred cccCeEECceEEEEeecCCCCCceEEEEEEcCCce
Q 016291 222 RLESLYFNRAFHWMAWGDFHESDSFILSFDISDET 256 (392)
Q Consensus 222 ~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~ 256 (392)
...++.++|.+|..+..+ .|+++|.+|++
T Consensus 187 e~TPlvvgg~lYv~t~~~------~V~ALDa~TGk 215 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN------KVIALDAATGK 215 (764)
T ss_pred ccCCEEECCEEEEECCCC------eEEEEECCCCc
Confidence 456899999999987665 89999998764
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=71.63 E-value=72 Score=28.17 Aligned_cols=206 Identities=9% Similarity=0.025 Sum_probs=108.8
Q ss_pred EEeeccceEEEEEc-CceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCC
Q 016291 113 FFGHCHGIVCISLR-YVKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCES 191 (392)
Q Consensus 113 ~~~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~ 191 (392)
+.+..+|-|.+.+. .++++.++|.+++...++.+. ..++.++...+ +++...
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------------~~G~~~~~~~g--~l~v~~---------- 58 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------------PNGMAFDRPDG--RLYVAD---------- 58 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------------EEEEEEECTTS--EEEEEE----------
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------------CceEEEEccCC--EEEEEE----------
Confidence 34444666666653 458999999999876543321 23445552222 223221
Q ss_pred CcEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCC-CCc--eEEEEEEcCCceEeEE----cCCC
Q 016291 192 PIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFH-ESD--SFILSFDISDETFKKI----AGPS 264 (392)
Q Consensus 192 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~--~~il~fD~~~e~~~~i----~~P~ 264 (392)
.....+++..++.++.+.............+.-.+--+|.+|.-...... ... ..|..++.. ++...+ ..|.
T Consensus 59 ~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN 137 (246)
T PF08450_consen 59 SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN 137 (246)
T ss_dssp TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE
T ss_pred cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc
Confidence 33556678888988877532111100001122234447887776543321 111 579999999 554433 2232
Q ss_pred cccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEe-eCCCCcccc--eEEecCCeEEEEe-
Q 016291 265 STLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTI-EGNSRLQKP--LVFWKSDELVMED- 339 (392)
Q Consensus 265 ~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i-~~~~~~~~p--~~~~~~~~il~~~- 339 (392)
.+ ..-+|+..++... ... .||..+-......+.....+ ........| +++..+|.|+...
T Consensus 138 ----------Gi~~s~dg~~lyv~ds---~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 138 ----------GIAFSPDGKTLYVADS---FNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp ----------EEEEETTSSEEEEEET---TTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred ----------ceEECCcchheeeccc---ccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 23 3345654444332 133 37777755323446654433 322222235 4556678877754
Q ss_pred CCCeEEEEECCCCCEEEeeecc
Q 016291 340 KTGKFCRYNLRTGEIKDLPVRR 361 (392)
Q Consensus 340 ~~~~~~~ydl~t~~~~~v~~~~ 361 (392)
..+++..||.+.+.+..+..+.
T Consensus 203 ~~~~I~~~~p~G~~~~~i~~p~ 224 (246)
T PF08450_consen 203 GGGRIVVFDPDGKLLREIELPV 224 (246)
T ss_dssp TTTEEEEEETTSCEEEEEE-SS
T ss_pred CCCEEEEECCCccEEEEEcCCC
Confidence 4679999999977778888773
No 67
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=68.37 E-value=98 Score=29.26 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=57.3
Q ss_pred EEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCC------eEEEEEEee----eCCCCceeEEE
Q 016291 246 FILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQS------LMEIWIMDE----VGVKAKWKKLL 315 (392)
Q Consensus 246 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~------~i~iW~l~~----~~~~~~W~~~~ 315 (392)
..+.||.++.... .+|.-.. .......+..+|+|+++......... .+++-+... ......|.-..
T Consensus 87 ~t~vyDt~t~av~--~~P~l~~--pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~ 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVA--TGPRLHS--PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS 162 (342)
T ss_pred CeEEEECCCCeEe--ccCCCCC--CCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc
Confidence 5888998888777 4444111 12222334558888887443211111 666665441 11234444333
Q ss_pred EeeC--CCCcc-------cceEEecCCeEEEEeC-CC--eEEEEECCCCCEEEee
Q 016291 316 TIEG--NSRLQ-------KPLVFWKSDELVMEDK-TG--KFCRYNLRTGEIKDLP 358 (392)
Q Consensus 316 ~i~~--~~~~~-------~p~~~~~~~~il~~~~-~~--~~~~ydl~t~~~~~v~ 358 (392)
+++ ..... .-.++. +|.-|++.. +. +.+.||.++.+|++++
T Consensus 163 -LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 163 -LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred -CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 432 21111 123445 565556543 33 6999999999999985
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=68.26 E-value=65 Score=31.28 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=60.0
Q ss_pred ceEEEEEEcCCceEeEEcCCCcccccCCCCceEEE-eCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCC
Q 016291 244 DSFILSFDISDETFKKIAGPSSTLNARKDSRELIV-LNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSR 322 (392)
Q Consensus 244 ~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~ 322 (392)
..++.+||+.+.++..+..|...+. .....+.+ -++...++ .. ....|.+-..+. ..|.--+.|+-
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~--~~~e~FeVShd~~fia~-~G---~~G~I~lLhakT----~eli~s~KieG--- 345 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEE--KSMERFEVSHDSNFIAI-AG---NNGHIHLLHAKT----KELITSFKIEG--- 345 (514)
T ss_pred ceEEEEeeccccccccccCCCCccc--chhheeEecCCCCeEEE-cc---cCceEEeehhhh----hhhhheeeecc---
Confidence 3589999999999999988876431 11112222 23332222 22 244555544442 34666565542
Q ss_pred cccceEEecCCeEEE-EeCCCeEEEEECCCCCEEEee
Q 016291 323 LQKPLVFWKSDELVM-EDKTGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 323 ~~~p~~~~~~~~il~-~~~~~~~~~ydl~t~~~~~v~ 358 (392)
.-.-+++..+++.|+ ...+++++.+|++++......
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 123456666666555 455679999999999765543
No 69
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=67.90 E-value=1.1e+02 Score=28.75 Aligned_cols=118 Identities=11% Similarity=0.216 Sum_probs=72.3
Q ss_pred CceEEEEeecCCCCCceEEEEEEcCCceEeEE---cCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEee
Q 016291 229 NRAFHWMAWGDFHESDSFILSFDISDETFKKI---AGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDE 304 (392)
Q Consensus 229 ~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i---~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~ 304 (392)
+|.+-|.+.-+ ..+|..||++.+..... .+++. ...+++ .--+|+++++..+ -..++.+|..+.
T Consensus 155 ~~~~l~v~DLG----~Dri~~y~~~dg~L~~~~~~~v~~G-----~GPRHi~FHpn~k~aY~v~E---L~stV~v~~y~~ 222 (346)
T COG2706 155 DGRYLVVPDLG----TDRIFLYDLDDGKLTPADPAEVKPG-----AGPRHIVFHPNGKYAYLVNE---LNSTVDVLEYNP 222 (346)
T ss_pred CCCEEEEeecC----CceEEEEEcccCccccccccccCCC-----CCcceEEEcCCCcEEEEEec---cCCEEEEEEEcC
Confidence 35555555443 45777777776555422 33432 223445 4568999998777 478999999886
Q ss_pred eCCCCceeEEEEeeCCC-Cc-----ccceEEecCCeEEEEeCCC----eEEEEECCCCCEEEeeec
Q 016291 305 VGVKAKWKKLLTIEGNS-RL-----QKPLVFWKSDELVMEDKTG----KFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 305 ~~~~~~W~~~~~i~~~~-~~-----~~p~~~~~~~~il~~~~~~----~~~~ydl~t~~~~~v~~~ 360 (392)
. ..+-..+.+|.... .+ ..-+.+..+|..+...+.+ .++.-|..+++++-+...
T Consensus 223 ~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 223 A--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred C--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 5 24566666665432 22 2345567888876665433 345557778888877754
No 70
>PLN02772 guanylate kinase
Probab=66.69 E-value=40 Score=32.46 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=51.9
Q ss_pred ccCeEECceEEEEeecCCC-CCceEEEEEEcCCceEeEEc----CCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeE
Q 016291 223 LESLYFNRAFHWMAWGDFH-ESDSFILSFDISDETFKKIA----GPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLM 297 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~-~~~~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i 297 (392)
..+|.++..+|.+...... .....+..||..+.+|..-. .|.. +..+...+.-+++|.++-.. ....=
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~----r~GhSa~v~~~~rilv~~~~---~~~~~ 100 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP----CKGYSAVVLNKDRILVIKKG---SAPDD 100 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC----CCcceEEEECCceEEEEeCC---CCCcc
Confidence 4668888999998865432 24568999999999998642 2332 34444566668888887544 24446
Q ss_pred EEEEEeee
Q 016291 298 EIWIMDEV 305 (392)
Q Consensus 298 ~iW~l~~~ 305 (392)
+||.|+-+
T Consensus 101 ~~w~l~~~ 108 (398)
T PLN02772 101 SIWFLEVD 108 (398)
T ss_pred ceEEEEcC
Confidence 89999854
No 71
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=65.41 E-value=1.3e+02 Score=28.64 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=78.9
Q ss_pred cEEEEEeCCCCceeEeeecccccceecccccc-CeEECceEEEEeecCCCCCceEEEEEEcCCce--EeEEcCCCccccc
Q 016291 193 IKVEMYTLSTDSWRKVNINLFAAGICFLQRLE-SLYFNRAFHWMAWGDFHESDSFILSFDISDET--FKKIAGPSSTLNA 269 (392)
Q Consensus 193 ~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~--~~~i~~P~~~~~~ 269 (392)
........++..|.......... ..... +++.+|.+|....++ .|.+||.++.+ |+.-..+..
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~----~~~~~~~~~~dg~v~~~~~~G------~i~A~d~~~g~~~W~~~~~~~~---- 100 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGG----IYAGPAPADGDGTVYVGTRDG------NIFALNPDTGLVKWSYPLLGAV---- 100 (370)
T ss_pred eEEEcccCcceeeeeecccCccc----eEeccccEeeCCeEEEecCCC------cEEEEeCCCCcEEecccCcCcc----
Confidence 34455555666776432111111 11222 599999999986665 89999999876 543333200
Q ss_pred CCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEEC
Q 016291 270 RKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNL 349 (392)
Q Consensus 270 ~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl 349 (392)
......+...+|++.+-... . .++.+++...+..|.....- . .....+. +..++.+++...++.+++.|.
T Consensus 101 ~~~~~~~~~~~G~i~~g~~~----g---~~y~ld~~~G~~~W~~~~~~-~-~~~~~~~-v~~~~~v~~~s~~g~~~al~~ 170 (370)
T COG1520 101 AQLSGPILGSDGKIYVGSWD----G---KLYALDASTGTLVWSRNVGG-S-PYYASPP-VVGDGTVYVGTDDGHLYALNA 170 (370)
T ss_pred eeccCceEEeCCeEEEeccc----c---eEEEEECCCCcEEEEEecCC-C-eEEecCc-EEcCcEEEEecCCCeEEEEEc
Confidence 01111233337886543322 2 78888874336778876533 1 1111222 223455555545788999999
Q ss_pred CCCCEEEe
Q 016291 350 RTGEIKDL 357 (392)
Q Consensus 350 ~t~~~~~v 357 (392)
+|++..+-
T Consensus 171 ~tG~~~W~ 178 (370)
T COG1520 171 DTGTLKWT 178 (370)
T ss_pred cCCcEEEE
Confidence 98887654
No 72
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=61.10 E-value=20 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=28.7
Q ss_pred eEEEEcCccc-ccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE
Q 016291 129 KVILCNSATR-EFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL 181 (392)
Q Consensus 129 ~~~V~NP~T~-~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 181 (392)
.++++||.|+ .|...-+ . . ..+.+.+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~WvPs~~--~---------~---~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWIPASK--H---------A---VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeEeCCC--C---------c---eeEEEEecCCCcEEEEEEec
Confidence 7899999997 7765322 1 1 34567789999999999873
No 73
>smart00612 Kelch Kelch domain.
Probab=59.77 E-value=33 Score=20.82 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=14.4
Q ss_pred eEEEEEEcCCceEeEEc
Q 016291 245 SFILSFDISDETFKKIA 261 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i~ 261 (392)
..+..||+.+.+|+.++
T Consensus 15 ~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 15 KSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeEEEECCCCCeEccCC
Confidence 46889999999998764
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=58.29 E-value=1.3e+02 Score=26.46 Aligned_cols=106 Identities=13% Similarity=0.184 Sum_probs=59.9
Q ss_pred CceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCceEEE-eCCeEEEEEecCCCCCCeEEEEEEeeeCC
Q 016291 229 NRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIV-LNESLAFVLHDASAVQSLMEIWIMDEVGV 307 (392)
Q Consensus 229 ~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~i~iW~l~~~~~ 307 (392)
+|.|||..... ..|..+|+.+.+...+.+|... ..... -+|+|.+.. . ..+.+. +..
T Consensus 11 ~g~l~~~D~~~-----~~i~~~~~~~~~~~~~~~~~~~-------G~~~~~~~g~l~v~~-~-----~~~~~~---d~~- 68 (246)
T PF08450_consen 11 DGRLYWVDIPG-----GRIYRVDPDTGEVEVIDLPGPN-------GMAFDRPDGRLYVAD-S-----GGIAVV---DPD- 68 (246)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTTEEEEEESSSEE-------EEEEECTTSEEEEEE-T-----TCEEEE---ETT-
T ss_pred CCEEEEEEcCC-----CEEEEEECCCCeEEEEecCCCc-------eEEEEccCCEEEEEE-c-----CceEEE---ecC-
Confidence 68999997654 4899999999999988887621 11122 245555432 2 112222 211
Q ss_pred CCceeEEEEeeCCC-Ccccc--eEEecCCeEEEEeCC---------CeEEEEECCCCCEEEe
Q 016291 308 KAKWKKLLTIEGNS-RLQKP--LVFWKSDELVMEDKT---------GKFCRYNLRTGEIKDL 357 (392)
Q Consensus 308 ~~~W~~~~~i~~~~-~~~~p--~~~~~~~~il~~~~~---------~~~~~ydl~t~~~~~v 357 (392)
..++.......... ....| +++.++|.+++-... ++++.++.. ++++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 34677666664221 23333 455667776665321 457888877 555554
No 75
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=57.96 E-value=17 Score=21.95 Aligned_cols=26 Identities=4% Similarity=-0.137 Sum_probs=18.9
Q ss_pred ccCeEECceEEEEeecCCCCCceEEEEEEcCC
Q 016291 223 LESLYFNRAFHWMAWGDFHESDSFILSFDISD 254 (392)
Q Consensus 223 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~ 254 (392)
..++..+|.+|.-..++ .+.+||.+|
T Consensus 15 ~~~~v~~g~vyv~~~dg------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC------EEEEEeCCC
Confidence 45678899999988776 899999875
No 76
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=57.61 E-value=23 Score=27.36 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=29.2
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEE
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRIL 181 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 181 (392)
.+.+.||.||.|..+-+.+. .+ ..+.+.+++.++.|+|+...
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~--------~l---s~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQ--------GF---SRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCC--------Cc---ceEEEEEcCCCCEEEEEEee
Confidence 78899999998655422111 22 45567678888999999874
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=57.45 E-value=1.6e+02 Score=27.22 Aligned_cols=120 Identities=12% Similarity=0.174 Sum_probs=65.5
Q ss_pred CceEEEEeecCCCCCceEEEEEEcC--CceEeEE----cCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEE
Q 016291 229 NRAFHWMAWGDFHESDSFILSFDIS--DETFKKI----AGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWI 301 (392)
Q Consensus 229 ~G~lywl~~~~~~~~~~~il~fD~~--~e~~~~i----~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~ 301 (392)
+|...+..... ...|.+||+. ++++..+ ..|........ ...+ ..-+|+..++... ....+.+|.
T Consensus 185 dg~~lyv~~~~----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~i~~~pdg~~lyv~~~---~~~~I~v~~ 256 (330)
T PRK11028 185 NQQYAYCVNEL----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW-AADIHITPDGRHLYACDR---TASLISVFS 256 (330)
T ss_pred CCCEEEEEecC----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc-ceeEEECCCCCEEEEecC---CCCeEEEEE
Confidence 55555555442 3588888886 3454432 23432111000 0122 2236666555433 367899998
Q ss_pred EeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeC--CCeEEEEEC--CCCCEEEeee
Q 016291 302 MDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDK--TGKFCRYNL--RTGEIKDLPV 359 (392)
Q Consensus 302 l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~--~~~~~~ydl--~t~~~~~v~~ 359 (392)
++..+ ..+..+..++.. ...+-+.+.++|+.++..+ ++.+..|++ .++.++.++.
T Consensus 257 i~~~~--~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 257 VSEDG--SVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred EeCCC--CeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 87643 456666666532 1223466777887666543 556777755 5677777654
No 78
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=57.12 E-value=7.4 Score=36.17 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCCCcHHHHHHHHhcCC--------ccccccccccchhhhhhhCC
Q 016291 3 RFSDLPEELVVEILAYLP--------ADSLMRFKCVQKSWYSLIAK 40 (392)
Q Consensus 3 ~~~~LP~Dll~~IL~rLP--------~~sl~r~r~VCK~W~~li~~ 40 (392)
.++.||.++|.+|+.|.. -++++.|..|||.|+.+..+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 477999999999999986 23588899999999987765
No 79
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=57.06 E-value=1.7e+02 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.3
Q ss_pred ceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCc
Q 016291 230 RAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSS 265 (392)
Q Consensus 230 G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 265 (392)
+++||....+ ..|..+|.++.+-+.++.|..
T Consensus 37 ~~L~w~DI~~-----~~i~r~~~~~g~~~~~~~p~~ 67 (307)
T COG3386 37 GALLWVDILG-----GRIHRLDPETGKKRVFPSPGG 67 (307)
T ss_pred CEEEEEeCCC-----CeEEEecCCcCceEEEECCCC
Confidence 5689987665 589999999999999999984
No 80
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=55.55 E-value=1.9e+02 Score=28.87 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=23.3
Q ss_pred cccCeEECceEEEEeecCCCCCceEEEEEEcCCce
Q 016291 222 RLESLYFNRAFHWMAWGDFHESDSFILSFDISDET 256 (392)
Q Consensus 222 ~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~ 256 (392)
...++..+|.+|....++ .+.++|.++.+
T Consensus 54 ~~sPvv~~g~vy~~~~~g------~l~AlD~~tG~ 82 (488)
T cd00216 54 EGTPLVVDGDMYFTTSHS------ALFALDAATGK 82 (488)
T ss_pred ccCCEEECCEEEEeCCCC------cEEEEECCCCh
Confidence 346788999999987665 79999998764
No 81
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.18 E-value=29 Score=25.64 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=15.0
Q ss_pred CCeEEEEECCCCCEEEee
Q 016291 341 TGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 341 ~~~~~~ydl~t~~~~~v~ 358 (392)
.++++.||++|++.+.+-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 458999999999998764
No 82
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=53.05 E-value=27 Score=22.11 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=14.4
Q ss_pred eEEEEEEcCCceEeEE
Q 016291 245 SFILSFDISDETFKKI 260 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i 260 (392)
..+.+||+.+.+|+.+
T Consensus 19 nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRI 34 (49)
T ss_pred cCEEEEECCCCEEEEC
Confidence 4689999999999988
No 83
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=52.28 E-value=2.5e+02 Score=27.97 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=14.8
Q ss_pred eEEEEECCCCCEEEeeec
Q 016291 343 KFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 343 ~~~~ydl~t~~~~~v~~~ 360 (392)
.+.++|+.+..|+.+.+.
T Consensus 295 sl~clNldt~~W~tl~~d 312 (830)
T KOG4152|consen 295 SLACLNLDTMAWETLLMD 312 (830)
T ss_pred ceeeeeecchheeeeeec
Confidence 578889999999988654
No 84
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=52.26 E-value=2.5e+02 Score=27.89 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=38.8
Q ss_pred CCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEECCCCCEEEeeeccccceeeEEEEe
Q 016291 293 VQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLRKYSAVNYL 372 (392)
Q Consensus 293 ~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~~~~~v~~~~~~~~~~~~~y~ 372 (392)
.+..+.+|. + .+-.|.++..-+ ..-..+++.|-|.+-...+++++.|.+++.+-.+...++. ..++.|.
T Consensus 388 qdk~v~lW~-~---~k~~wt~~~~d~-----~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~--ls~v~ys 456 (626)
T KOG2106|consen 388 QDKHVRLWN-D---HKLEWTKIIEDP-----AECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQ--LSVVRYS 456 (626)
T ss_pred CcceEEEcc-C---CceeEEEEecCc-----eeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCc--eEEEEEc
Confidence 344555665 1 134566654221 1224456666444445577889999988877766655332 2455554
Q ss_pred c
Q 016291 373 S 373 (392)
Q Consensus 373 ~ 373 (392)
+
T Consensus 457 p 457 (626)
T KOG2106|consen 457 P 457 (626)
T ss_pred C
Confidence 3
No 85
>PF13013 F-box-like_2: F-box-like domain
Probab=49.19 E-value=8.5 Score=29.63 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCCCcHHHHHHHHhcCCccccccccccch
Q 016291 4 FSDLPEELVVEILAYLPADSLMRFKCVQK 32 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VCK 32 (392)
..+||+||++.|+..-..+++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56799999999999999888877666665
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=46.62 E-value=2.1e+02 Score=25.36 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=62.9
Q ss_pred CceEEEEeecCCCCCceEEEEEEcCCceE-eEEcCCC-cccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEeee
Q 016291 229 NRAFHWMAWGDFHESDSFILSFDISDETF-KKIAGPS-STLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDEV 305 (392)
Q Consensus 229 ~G~lywl~~~~~~~~~~~il~fD~~~e~~-~~i~~P~-~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~ 305 (392)
+|...+..... ...|..+|+++.+. ..+.... ...........+ ..-+|+..++... ....+.+|-++
T Consensus 167 dg~~l~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~---~~~~i~v~d~~-- 237 (300)
T TIGR03866 167 DGKELWVSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG---PANRVAVVDAK-- 237 (300)
T ss_pred CCCEEEEEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC---CCCeEEEEECC--
Confidence 56544444322 24789999988754 3333211 000000001122 2345666555433 24568888543
Q ss_pred CCCCceeEEEEeeCCCCcccceEEecCCeEEEEe--CCCeEEEEECCCCCE-EEeeeccc
Q 016291 306 GVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMED--KTGKFCRYNLRTGEI-KDLPVRRR 362 (392)
Q Consensus 306 ~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~--~~~~~~~ydl~t~~~-~~v~~~~~ 362 (392)
.|..+..+.... ....+.+.++|+.++.. .++.+..||+++++. +++.....
T Consensus 238 ----~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 238 ----TYEVLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred ----CCcEEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence 245444443221 12335566777766653 367899999999984 77776543
No 87
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=45.98 E-value=3.1e+02 Score=27.12 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=74.8
Q ss_pred EEEEEeCCCCceeEeeeccccccee----c---c-ccccCeEECceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCc
Q 016291 194 KVEMYTLSTDSWRKVNINLFAAGIC----F---L-QRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSS 265 (392)
Q Consensus 194 ~~~vyss~~~~Wr~~~~~~~~~~~~----~---~-~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~ 265 (392)
.+.+|+..+++-+.++...|..... . . ....-..++|.++-+..++ +...++....- .|+++..
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG------kaFi~~~~~~~--~iqv~~~ 359 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG------KAFIMRPWDGY--SIQVGKK 359 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC------cEEEECCCCCe--eEEcCCC
Confidence 4566777777767666443322100 0 0 0111244689999998887 55666554332 2344442
Q ss_pred ccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCe-EEEEeCCCeE
Q 016291 266 TLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDE-LVMEDKTGKF 344 (392)
Q Consensus 266 ~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~~~~~~ 344 (392)
- +-...++......+.+-+. .+..+.|.-.+.. ++.++....+.-..+.+.++|+ +++-....++
T Consensus 360 ~---~VrY~r~~~~~e~~vigt~----dgD~l~iyd~~~~-------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 360 G---GVRYRRIQVDPEGDVIGTN----DGDKLGIYDKDGG-------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred C---ceEEEEEccCCcceEEecc----CCceEEEEecCCc-------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence 0 0011133333333333222 2566777654421 2344543322223455667777 4445555689
Q ss_pred EEEECCCCCEEEee
Q 016291 345 CRYNLRTGEIKDLP 358 (392)
Q Consensus 345 ~~ydl~t~~~~~v~ 358 (392)
..+|+++++.+.+.
T Consensus 426 ~vididngnv~~id 439 (668)
T COG4946 426 WVIDIDNGNVRLID 439 (668)
T ss_pred EEEEecCCCeeEec
Confidence 99999999998875
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.24 E-value=3e+02 Score=26.69 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=54.6
Q ss_pred EEEEEEcCCceEe-EEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEe-eCCCCc
Q 016291 246 FILSFDISDETFK-KIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTI-EGNSRL 323 (392)
Q Consensus 246 ~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i-~~~~~~ 323 (392)
.|..|+.++..-. .|..-.. -.+.. ..-+|++.++... ..++.+|-+++ |..+.+. +..++.
T Consensus 377 ~i~l~~~e~~~dr~lise~~~-----its~~-iS~d~k~~LvnL~----~qei~LWDl~e------~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISEEQP-----ITSFS-ISKDGKLALVNLQ----DQEIHLWDLEE------NKLVRKYFGHKQGH 440 (519)
T ss_pred ceeeechhhhhhhccccccCc-----eeEEE-EcCCCcEEEEEcc----cCeeEEeecch------hhHHHHhhcccccc
Confidence 6777777654433 3322111 01112 3348899998665 78899999885 3332221 122221
Q ss_pred -ccceEEecC-CeEEEE-eCCCeEEEEECCCCCEEEeeecc
Q 016291 324 -QKPLVFWKS-DELVME-DKTGKFCRYNLRTGEIKDLPVRR 361 (392)
Q Consensus 324 -~~p~~~~~~-~~il~~-~~~~~~~~ydl~t~~~~~v~~~~ 361 (392)
..-.|++.. +..+.- ..+.+++.||.++++.-.+-...
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence 122344433 344443 35779999999998875554433
No 89
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=45.07 E-value=83 Score=26.61 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=28.2
Q ss_pred CCccEEeeccceEEEEEcCceEEEEcCccccccc
Q 016291 109 LLYPFFGHCHGIVCISLRYVKVILCNSATREFRE 142 (392)
Q Consensus 109 ~~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~ 142 (392)
.++.-+...||-+|+.+..+..+..+|+||+-..
T Consensus 31 sr~s~VS~~~~~~C~s~~~~~~~~vDP~Tgra~s 64 (263)
T PF07861_consen 31 SRFSSVSFAGGRACLSDTAGSVYTVDPLTGRAVS 64 (263)
T ss_pred ceeEEEecCCceEEEecCCCceEEeccccccccc
Confidence 3556677889999999988899999999987654
No 90
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=44.92 E-value=2.3e+02 Score=25.44 Aligned_cols=110 Identities=10% Similarity=0.098 Sum_probs=65.1
Q ss_pred eEEEEEEcCCceEeEEcCCCcccccCCCCc-eE-EEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCC
Q 016291 245 SFILSFDISDETFKKIAGPSSTLNARKDSR-EL-IVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSR 322 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~-~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~ 322 (392)
..|-+.|+.+..+....+|+. .... .| +.-+|+...+... ....-+|.|-.......=+.++.++...
T Consensus 146 g~irvWDl~~~~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~- 215 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPED-----DTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN- 215 (311)
T ss_pred CcEEEEEccCCccccccCCCC-----CcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc-
Confidence 479999999999999899984 3332 45 4567776655433 5667899877542223333333333222
Q ss_pred cccce--EEecCCeEEE-EeCCCeEEEEECCCCCEEEeeeccccce
Q 016291 323 LQKPL--VFWKSDELVM-EDKTGKFCRYNLRTGEIKDLPVRRRLRK 365 (392)
Q Consensus 323 ~~~p~--~~~~~~~il~-~~~~~~~~~ydl~t~~~~~v~~~~~~~~ 365 (392)
++.+ ...++++.+- ...+..+..|+.++--.-++.+.+...|
T Consensus 216 -~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 216 -GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred -ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce
Confidence 2233 2345666444 4456778889988873344555544333
No 91
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=41.63 E-value=2.6e+02 Score=25.02 Aligned_cols=130 Identities=15% Similarity=0.208 Sum_probs=68.7
Q ss_pred cccccCeEECceEEEEeecCCCCCceEEEEEEcCCceE-eEEcCCCcccccC-------CCCceEEEeCCeEEEEEecCC
Q 016291 220 LQRLESLYFNRAFHWMAWGDFHESDSFILSFDISDETF-KKIAGPSSTLNAR-------KDSRELIVLNESLAFVLHDAS 291 (392)
Q Consensus 220 ~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~-------~~~~~L~~~~g~L~l~~~~~~ 291 (392)
+.....|..||++|...... ..|+.||++++.- ....+|....... .....+++.+.-|-++-...
T Consensus 68 ~~gTg~VVynGs~yynk~~t-----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~- 141 (249)
T KOG3545|consen 68 WDGTGHVVYNGSLYYNKAGT-----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP- 141 (249)
T ss_pred ccccceEEEcceEEeeccCC-----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc-
Confidence 34566799999999987543 5899999999643 4456665322111 01125555444454442211
Q ss_pred CCCCeEEEEEEeee--CCCCceeEEEEeeCCCCcccceEEecCCeEEEEeC----CCeE-EEEECCCCCEEEeeec
Q 016291 292 AVQSLMEIWIMDEV--GVKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDK----TGKF-CRYNLRTGEIKDLPVR 360 (392)
Q Consensus 292 ~~~~~i~iW~l~~~--~~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~----~~~~-~~ydl~t~~~~~v~~~ 360 (392)
.....+.|-.|+.. ..+..|.-.. +. .... -++.-+|.++.+.. ...+ ++||..+++-+.+.++
T Consensus 142 ~~~g~iv~skLdp~tl~~e~tW~T~~--~k-~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 142 ENAGTIVLSKLDPETLEVERTWNTTL--PK-RSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred ccCCcEEeeccCHHHhheeeeecccc--CC-CCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 13445555666642 1123342111 11 0111 22333455555532 2233 7999999998888765
No 92
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=39.88 E-value=2.8e+02 Score=24.84 Aligned_cols=171 Identities=13% Similarity=0.106 Sum_probs=87.3
Q ss_pred CcEEEEEeCCCCceeEeeecccccceeccccccCeEECceEEEEeecCCCCCceEEEEEEcCC--ceEeEEcCCCccccc
Q 016291 192 PIKVEMYTLSTDSWRKVNINLFAAGICFLQRLESLYFNRAFHWMAWGDFHESDSFILSFDISD--ETFKKIAGPSSTLNA 269 (392)
Q Consensus 192 ~~~~~vyss~~~~Wr~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~--e~~~~i~~P~~~~~~ 269 (392)
.....+|+..++++|.+... ... +.....+.-||.+.-..... .....+-.|+..+ ......+.|..+..
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~--td~---FCSgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~e~~~~m~~- 116 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ--TDT---FCSGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWTESPNDMQS- 116 (243)
T ss_pred eEEEEEEecCCCcEEeccCC--CCC---cccCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCceECcccccC-
Confidence 34567888888888877643 121 12233455677766544432 1234577788764 22234444443221
Q ss_pred CCCCc-eEEEeCCeEEEEEecCCCCCCeEEEEEEeeeC-CCCceeEEEEee-CCCCcccceE-EecCCeEEEEeCCCeEE
Q 016291 270 RKDSR-ELIVLNESLAFVLHDASAVQSLMEIWIMDEVG-VKAKWKKLLTIE-GNSRLQKPLV-FWKSDELVMEDKTGKFC 345 (392)
Q Consensus 270 ~~~~~-~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~-~~~~W~~~~~i~-~~~~~~~p~~-~~~~~~il~~~~~~~~~ 345 (392)
.+... ....-+|++.++.-.. ....+.|=-+... ....|....... .......|+. +.++|+|+++.+ .+-.
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~---~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~s~ 192 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSN---NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RGSI 192 (243)
T ss_pred CCccccceECCCCCEEEEeCcC---CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CCcE
Confidence 22222 3344578888875442 4455655322111 011222221111 1111235654 457889877664 4577
Q ss_pred EEECCCCCE-EEeee-ccccceeeEEEEecceec
Q 016291 346 RYNLRTGEI-KDLPV-RRRLRKYSAVNYLSSLVS 377 (392)
Q Consensus 346 ~ydl~t~~~-~~v~~-~~~~~~~~~~~y~~sl~~ 377 (392)
.||.+++++ +++.. ++. .+.+|..-+-+-
T Consensus 193 i~d~~~n~v~~~lP~lPg~---~R~YP~sgssvm 223 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPGG---PRNYPASGSSVM 223 (243)
T ss_pred EEeCCCCeEEeeCCCCCCC---ceecCCCcceEE
Confidence 789999976 55543 332 256666655443
No 93
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=37.48 E-value=4e+02 Score=28.19 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=41.7
Q ss_pred CCCeEEEEEEeeeC----CCCceeEEEEeeCCCCcccceEEecCCeEEEEeCCCeEEEEECCCC
Q 016291 293 VQSLMEIWIMDEVG----VKAKWKKLLTIEGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTG 352 (392)
Q Consensus 293 ~~~~i~iW~l~~~~----~~~~W~~~~~i~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~ 352 (392)
.+..+.||++.++. ....|..+..=.+...-....++..+|.++....++.+..||..++
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 47889999997652 2457988763222111123346677889999988999999999984
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=36.67 E-value=1.1e+02 Score=23.89 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=33.8
Q ss_pred CCeEEEEeC-----CCeEEEEECCCCCEEEeeec--c--ccceeeEEEEecceeccccCC
Q 016291 332 SDELVMEDK-----TGKFCRYNLRTGEIKDLPVR--R--RLRKYSAVNYLSSLVSVRAGN 382 (392)
Q Consensus 332 ~~~il~~~~-----~~~~~~ydl~t~~~~~v~~~--~--~~~~~~~~~y~~sl~~~~~~~ 382 (392)
+|-++.... ...+++||+++.+++.+..+ . .......+.|..+|.-+....
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 64 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYND 64 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecC
Confidence 455555432 35799999999999999886 1 112236777887777765443
No 95
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.98 E-value=6.8e+02 Score=27.95 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=40.8
Q ss_pred eEEEEEEcCCceEeEEcCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC
Q 016291 245 SFILSFDISDETFKKIAGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN 320 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~ 320 (392)
..|+-|.-...+-..+.+|.+... .....| ...++.+..+..... ....+++|..+.|. |-++..+...
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de--~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh----WYLKq~l~~~ 335 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDE--KEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH----WYLKQELQFS 335 (1265)
T ss_pred CcEEEEecCCccccccccCCcccc--cchheeeecCCCCceeeeeccc-ccceEEEEEecCeE----EEEEEEEecc
Confidence 368888877776665555553221 112244 344555544422221 35569999999764 9999887654
No 96
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=34.04 E-value=4e+02 Score=25.02 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=61.5
Q ss_pred ceEEEEEEcCCceEeEEcCCCcccccCCCCceE-EEeCCe-EEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCC
Q 016291 244 DSFILSFDISDETFKKIAGPSSTLNARKDSREL-IVLNES-LAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNS 321 (392)
Q Consensus 244 ~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L-~~~~g~-L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~ 321 (392)
...+.++|+++++...+..|........--..+ -.-+++ +.+....+ ....+.+...+-......+.....-+.-.
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR--~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNR--DQNRLDLVLCDASTGETRVVLEETSDGWV 234 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEET--TSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEccc--CCCEEEEEEEECCCCceeEEEEecCCcce
Confidence 457899999999888888774221101000122 234666 76665554 57778888877543345555543322222
Q ss_pred CcccceEEe--cCCeEEEEeC-CC--eEEEEECCCCCEEEee
Q 016291 322 RLQKPLVFW--KSDELVMEDK-TG--KFCRYNLRTGEIKDLP 358 (392)
Q Consensus 322 ~~~~p~~~~--~~~~il~~~~-~~--~~~~ydl~t~~~~~v~ 358 (392)
....+..+. +++.++++.. ++ .++.|+..++..+.|-
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT 276 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT 276 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc
Confidence 233455554 3455555532 22 6899999988866543
No 97
>PRK04792 tolB translocation protein TolB; Provisional
Probab=33.73 E-value=4.7e+02 Score=25.67 Aligned_cols=187 Identities=8% Similarity=0.070 Sum_probs=92.1
Q ss_pred eEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEe
Q 016291 129 KVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKV 208 (392)
Q Consensus 129 ~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~ 208 (392)
.++++|..|++...+...+. ......+.|..+ +++... ... ....+.+++..++..+.+
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g-------------~~~~~~wSPDG~--~La~~~-~~~-----g~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPG-------------INGAPRFSPDGK--KLALVL-SKD-----GQPEIYVVDIATKALTRI 301 (448)
T ss_pred EEEEEECCCCCeEEecCCCC-------------CcCCeeECCCCC--EEEEEE-eCC-----CCeEEEEEECCCCCeEEC
Confidence 79999999988766643221 011234555433 232221 111 145677778888877665
Q ss_pred eecccccceeccccccCeEECce-EEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEEE
Q 016291 209 NINLFAAGICFLQRLESLYFNRA-FHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVL 287 (392)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~ 287 (392)
...... .......-+|. +++..... ....|..+|+++.+...+..... ....... .-+|+..++.
T Consensus 302 t~~~~~------~~~p~wSpDG~~I~f~s~~~---g~~~Iy~~dl~~g~~~~Lt~~g~----~~~~~~~-SpDG~~l~~~ 367 (448)
T PRK04792 302 TRHRAI------DTEPSWHPDGKSLIFTSERG---GKPQIYRVNLASGKVSRLTFEGE----QNLGGSI-TPDGRSMIMV 367 (448)
T ss_pred ccCCCC------ccceEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEEecCCC----CCcCeeE-CCCCCEEEEE
Confidence 421100 00111122553 44444322 23579999998887776542221 0111122 2356544443
Q ss_pred ecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCe-EEEEeC-CC--eEEEEECCCCCEEEeee
Q 016291 288 HDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDE-LVMEDK-TG--KFCRYNLRTGEIKDLPV 359 (392)
Q Consensus 288 ~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~~-~~--~~~~ydl~t~~~~~v~~ 359 (392)
.. .....+||+++-.+ .....+ ........| .+.++|+ |++... ++ .++.+|...+..+.+..
T Consensus 368 ~~---~~g~~~I~~~dl~~--g~~~~l---t~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 368 NR---TNGKFNIARQDLET--GAMQVL---TSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred Ee---cCCceEEEEEECCC--CCeEEc---cCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 32 24567899888543 222222 111111234 4556666 444332 22 47788887766666654
No 98
>PF15408 PH_7: Pleckstrin homology domain
Probab=33.18 E-value=16 Score=26.45 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.8
Q ss_pred cccccccccchhhhhhhCChHHH
Q 016291 22 DSLMRFKCVQKSWYSLIAKPKFV 44 (392)
Q Consensus 22 ~sl~r~r~VCK~W~~li~~p~F~ 44 (392)
+-++..+-|||+|-....+|+|.
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 34555678999999999999985
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=32.39 E-value=4.6e+02 Score=26.19 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCCCCCCcEEEEEeCCCCc---eeEee---ecccccceec----cccccCeEECceEEEEeecCCCCCce
Q 016291 176 KVVRILYFIDNPGCESPIKVEMYTLSTDS---WRKVN---INLFAAGICF----LQRLESLYFNRAFHWMAWGDFHESDS 245 (392)
Q Consensus 176 kvv~~~~~~~~~~~~~~~~~~vyss~~~~---Wr~~~---~~~~~~~~~~----~~~~~~v~~~G~lywl~~~~~~~~~~ 245 (392)
.|||..... ..+-+||+-+.++ |.... ..+.....|. +.+..-..-||.---+..+. .
T Consensus 420 EvVcAvtIS-------~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----s 487 (705)
T KOG0639|consen 420 EVVCAVTIS-------NPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----S 487 (705)
T ss_pred cEEEEEEec-------CCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----c
Q ss_pred EEEEEEcCCceEeEE-cCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCc
Q 016291 246 FILSFDISDETFKKI-AGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRL 323 (392)
Q Consensus 246 ~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~ 323 (392)
.+-..|++..+-+.- +++.. ...+..| ...+-+||+.++. +..|.||-|.+ =+++..++--..-
T Consensus 488 tlsiWDLAapTprikaeltss----apaCyALa~spDakvcFsccs----dGnI~vwDLhn------q~~VrqfqGhtDG 553 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSS----APACYALAISPDAKVCFSCCS----DGNIAVWDLHN------QTLVRQFQGHTDG 553 (705)
T ss_pred eeeeeeccCCCcchhhhcCCc----chhhhhhhcCCccceeeeecc----CCcEEEEEccc------ceeeecccCCCCC
Q ss_pred ccceEEecCCeEEEEeC-CCeEEEEECCCCC
Q 016291 324 QKPLVFWKSDELVMEDK-TGKFCRYNLRTGE 353 (392)
Q Consensus 324 ~~p~~~~~~~~il~~~~-~~~~~~ydl~t~~ 353 (392)
..-+.+.++|.-+.... +..+-+||+++++
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhh
No 100
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=31.62 E-value=3.1e+02 Score=23.46 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=17.9
Q ss_pred CCCeEEEEECCCCCEEEeeec
Q 016291 340 KTGKFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 340 ~~~~~~~ydl~t~~~~~v~~~ 360 (392)
.++.+|.|++.|++++.+.-.
T Consensus 138 ~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 138 KGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred cCCeEEEEEccCCceeEeeec
Confidence 467899999999999998753
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.27 E-value=3e+02 Score=27.02 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCe-EEEEeCCC-eEEEEECCCCCEEEeeeccccc--e--ee
Q 016291 294 QSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDE-LVMEDKTG-KFCRYNLRTGEIKDLPVRRRLR--K--YS 367 (392)
Q Consensus 294 ~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~~~~-~~~~ydl~t~~~~~v~~~~~~~--~--~~ 367 (392)
+..++|+.++..- .. ++..|-+...--.-.++.++|. +++..... -++.|||++.++..+.-..... . +.
T Consensus 234 d~~lrifqvDGk~--N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~F 309 (514)
T KOG2055|consen 234 DGTLRIFQVDGKV--NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERF 309 (514)
T ss_pred CCcEEEEEecCcc--Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhhee
Confidence 5667777776532 11 3444432211011234556776 66665433 4899999999999987543211 1 13
Q ss_pred EEEEecceeccccC
Q 016291 368 AVNYLSSLVSVRAG 381 (392)
Q Consensus 368 ~~~y~~sl~~~~~~ 381 (392)
-+.+..+++-+.|.
T Consensus 310 eVShd~~fia~~G~ 323 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGN 323 (514)
T ss_pred EecCCCCeEEEccc
Confidence 34455555555543
No 102
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=29.51 E-value=7.1e+02 Score=26.48 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=30.9
Q ss_pred EEEEEEcCCce-EeEEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeee
Q 016291 246 FILSFDISDET-FKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEV 305 (392)
Q Consensus 246 ~il~fD~~~e~-~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~ 305 (392)
.|+.||++=|. ...+++|... ..+..+.-.-.+=.+++.. ....+.||+.+++
T Consensus 253 ellv~dle~~~~l~vvpier~~----akfv~vlP~~~rd~LfclH---~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGG----AKFVDVLPDPRRDALFCLH---SNGRLTIRVRKEE 306 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCC----cceeEeccCCCcceEEEEe---cCCeEEEEEeecc
Confidence 69999999775 4678888741 1111222222222333333 2567888888875
No 103
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.64 E-value=5.6e+02 Score=24.96 Aligned_cols=101 Identities=11% Similarity=0.192 Sum_probs=56.7
Q ss_pred eEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCC-eEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCc
Q 016291 245 SFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNE-SLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRL 323 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g-~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~ 323 (392)
..|..+|+.+++-+.+-..+.. ...... .-+| +|.+. ... ...-+||+++-.+ ..+.++..-+ ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~----~~~~~~-SPDG~~la~~-~~~---~g~~~Iy~~dl~~--g~~~~LT~~~---~~ 278 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM----LVVSDV-SKDGSKLLLT-MAP---KGQPDIYLYDTNT--KTLTQITNYP---GI 278 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc----EEeeEE-CCCCCEEEEE-Ecc---CCCcEEEEEECCC--CcEEEcccCC---Cc
Confidence 4799999998877665322210 000122 2356 44443 332 3457899988543 3455443222 11
Q ss_pred ccceEEecCCe-EEEEeCC---CeEEEEECCCCCEEEeee
Q 016291 324 QKPLVFWKSDE-LVMEDKT---GKFCRYNLRTGEIKDLPV 359 (392)
Q Consensus 324 ~~p~~~~~~~~-il~~~~~---~~~~~ydl~t~~~~~v~~ 359 (392)
...-.+.++|+ |+|..+. ..++.+|+.+++.+++-.
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 12224556664 7776532 279999999999987754
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=25.87 E-value=5e+02 Score=23.54 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=63.8
Q ss_pred ECceEEEEeecCCCCCceEEEEEEcCCceEe-EEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeC
Q 016291 228 FNRAFHWMAWGDFHESDSFILSFDISDETFK-KIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVG 306 (392)
Q Consensus 228 ~~G~lywl~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~ 306 (392)
-+|.||=-+... .+..|..+|+++++.. ..++|+.... ..+...+++|..++.. ....=+|-.
T Consensus 54 ~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~Fg-----EGit~~~d~l~qLTWk----~~~~f~yd~---- 117 (264)
T PF05096_consen 54 DDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFG-----EGITILGDKLYQLTWK----EGTGFVYDP---- 117 (264)
T ss_dssp ETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--E-----EEEEEETTEEEEEESS----SSEEEEEET----
T ss_pred CCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccc-----eeEEEECCEEEEEEec----CCeEEEEcc----
Confidence 357777766544 3678999999998764 6789984311 2678889999888765 343333322
Q ss_pred CCCceeEEEEeeCCCCcccceEEecCCe-EEEEeCCCeEEEEECCCCCE-EEee
Q 016291 307 VKAKWKKLLTIEGNSRLQKPLVFWKSDE-LVMEDKTGKFCRYNLRTGEI-KDLP 358 (392)
Q Consensus 307 ~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~~~~~~~~ydl~t~~~-~~v~ 358 (392)
....++.+++.. ..-+++..+|+ +++-....+++..|.++=+. +++.
T Consensus 118 --~tl~~~~~~~y~---~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 118 --NTLKKIGTFPYP---GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp --TTTEEEEEEE-S---SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred --ccceEEEEEecC---CcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 235555666543 24455555555 44444456899999887654 3344
No 105
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=25.72 E-value=5.4e+02 Score=23.80 Aligned_cols=104 Identities=12% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCceEEEEEEcC-CceEeEEcCCCcccccCC--CCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEE-e
Q 016291 242 ESDSFILSFDIS-DETFKKIAGPSSTLNARK--DSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLT-I 317 (392)
Q Consensus 242 ~~~~~il~fD~~-~e~~~~i~~P~~~~~~~~--~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~-i 317 (392)
+...++++-|.- +.+-..|++|..--+.+. .+.+++.++| -++.-.|+-+...+ .+.=+++.+ +
T Consensus 74 SqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-----------LdN~Csiy~ls~~d-~~g~~~v~r~l 141 (343)
T KOG0286|consen 74 SQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-----------LDNKCSIYPLSTRD-AEGNVRVSREL 141 (343)
T ss_pred ccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-----------cCceeEEEeccccc-ccccceeeeee
Confidence 344577888864 456677888875333221 1225555555 13334455555221 111122222 2
Q ss_pred eCCCCcccceEEecCCeEEEEeCCCeEEEEECCCCCEEEe
Q 016291 318 EGNSRLQKPLVFWKSDELVMEDKTGKFCRYNLRTGEIKDL 357 (392)
Q Consensus 318 ~~~~~~~~p~~~~~~~~il~~~~~~~~~~ydl~t~~~~~v 357 (392)
.--.++-.-..+.+++.|+--..+.....||+++++....
T Consensus 142 ~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEE
Confidence 2111221222234556666666677889999999876554
No 106
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=25.54 E-value=4.9e+02 Score=23.31 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=31.2
Q ss_pred cccCeEEC---ceEEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCc---eE-EEeCCeEEEEE
Q 016291 222 RLESLYFN---RAFHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSR---EL-IVLNESLAFVL 287 (392)
Q Consensus 222 ~~~~v~~~---G~lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~---~L-~~~~g~L~l~~ 287 (392)
..+++.++ |.+|-|.... ..|+.+|......+.+.|....+....... .+ ..-+|.|.++.
T Consensus 172 d~S~l~~~p~t~~lliLS~es-----~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDES-----RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---EEEEETTTTEEEEEETTT-----TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceEEcCCCCeEEEEECCC-----CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 34556554 6788888765 599999977777788888764332111111 33 23477887763
No 107
>PRK05137 tolB translocation protein TolB; Provisional
Probab=24.63 E-value=6.5e+02 Score=24.40 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=89.1
Q ss_pred ceEEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeE
Q 016291 128 VKVILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRK 207 (392)
Q Consensus 128 ~~~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~ 207 (392)
..++++|+.|++...+...+. ......+.|..+ +++... ... ....+.+++..++.-+.
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g-------------~~~~~~~SPDG~--~la~~~-~~~-----g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG-------------MTFAPRFSPDGR--KVVMSL-SQG-----GNTDIYTMDLRSGTTTR 284 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC-------------cccCcEECCCCC--EEEEEE-ecC-----CCceEEEEECCCCceEE
Confidence 379999999998877653221 111233455322 222221 111 13456667777776555
Q ss_pred eeecccccceeccccccCeEECce-EEEEeecCCCCCceEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEE
Q 016291 208 VNINLFAAGICFLQRLESLYFNRA-FHWMAWGDFHESDSFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFV 286 (392)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~ 286 (392)
+.... . ........-+|. +++..... ....|..+|+.++..+.+..... ....... .-+|+..++
T Consensus 285 Lt~~~--~----~~~~~~~spDG~~i~f~s~~~---g~~~Iy~~d~~g~~~~~lt~~~~----~~~~~~~-SpdG~~ia~ 350 (435)
T PRK05137 285 LTDSP--A----IDTSPSYSPDGSQIVFESDRS---GSPQLYVMNADGSNPRRISFGGG----RYSTPVW-SPRGDLIAF 350 (435)
T ss_pred ccCCC--C----ccCceeEcCCCCEEEEEECCC---CCCeEEEEECCCCCeEEeecCCC----cccCeEE-CCCCCEEEE
Confidence 43211 0 001111222453 44443222 13478889988877665532211 0111122 224544433
Q ss_pred EecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEEecCCe-EEEEeCC------CeEEEEECCCCCEEEeee
Q 016291 287 LHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVFWKSDE-LVMEDKT------GKFCRYNLRTGEIKDLPV 359 (392)
Q Consensus 287 ~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~~~~~~-il~~~~~------~~~~~ydl~t~~~~~v~~ 359 (392)
... ......||+++-.+ ... +. +...... ....+.++|+ |++.... .+++.+|+.+++.+.+..
T Consensus 351 ~~~---~~~~~~i~~~d~~~--~~~-~~--lt~~~~~-~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 351 TKQ---GGGQFSIGVMKPDG--SGE-RI--LTSGFLV-EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EEc---CCCceEEEEEECCC--Cce-Ee--ccCCCCC-CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 332 13346777776433 112 21 2111111 2234566666 4444321 368999999988877654
No 108
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=23.96 E-value=3.2e+02 Score=25.25 Aligned_cols=56 Identities=7% Similarity=0.092 Sum_probs=35.0
Q ss_pred CCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceEE--ecCCeEEE-EeCCCeEEEEECCCCCEE
Q 016291 293 VQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLVF--WKSDELVM-EDKTGKFCRYNLRTGEIK 355 (392)
Q Consensus 293 ~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~~--~~~~~il~-~~~~~~~~~ydl~t~~~~ 355 (392)
.+..|=+|..-++. +.-|+.+- . -...+.+ ..++..|+ ...|..+..||.+|++..
T Consensus 67 ~Dr~I~LWnv~gdc-eN~~~lkg---H---sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDC-ENFWVLKG---H---SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred CcceEEEEeccccc-cceeeecc---c---cceeEeeeeccCCCEEEEecCCceEEEEecccceee
Confidence 36778888765543 46687761 1 1223333 34555444 667889999999998754
No 109
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.29 E-value=1.6e+02 Score=28.35 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=48.7
Q ss_pred CCceEEEEEEcCCceEeEEc-CCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCC
Q 016291 242 ESDSFILSFDISDETFKKIA-GPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGN 320 (392)
Q Consensus 242 ~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~ 320 (392)
...+.|+..|+.+++...+- -..-+ ...+..-.+..|.+.|++-....=.-+||.++.++ ...|....+. ..
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wl-----gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~-~~ 237 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWL-----GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRM-EG 237 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-E-----EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS----TT
T ss_pred CCCceEEEEECCCCceeEEEecCccc-----cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCC-CC
Confidence 34578999999999887653 22210 01122334566777777532111123789999775 3444443332 22
Q ss_pred CCcccceEEecCCeEEEE-e--CC---CeEEEEECCCCCEEEee
Q 016291 321 SRLQKPLVFWKSDELVME-D--KT---GKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 321 ~~~~~p~~~~~~~~il~~-~--~~---~~~~~ydl~t~~~~~v~ 358 (392)
....+.+-. .+|..|+. . .+ .-++.||++|++-+.+.
T Consensus 238 e~~gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 238 ESVGHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEEE--TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred ccccccccc-CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 222333322 34543332 1 22 25899999998876653
No 110
>PLN00181 protein SPA1-RELATED; Provisional
Probab=22.72 E-value=9.5e+02 Score=25.59 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=50.9
Q ss_pred eEEEEEEcCCceEeEEcCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcc
Q 016291 245 SFILSFDISDETFKKIAGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQ 324 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~ 324 (392)
..|..+|+.+..-....+..+ ...-..+.-.++...+.. . .+..+.||-+........|..+..+.-.....
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h----~~~V~~v~f~~~~~lvs~-s---~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGH----SKTVSYVRFVDSSTLVSS-S---TDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred CeEEEEECCCCCccceEecCC----CCCEEEEEEeCCCEEEEE-E---CCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 478999987653211111111 111113333456554433 3 36789999886432123465555554222111
Q ss_pred cceEEecCCeEEEE-eCCCeEEEEECCCC
Q 016291 325 KPLVFWKSDELVME-DKTGKFCRYNLRTG 352 (392)
Q Consensus 325 ~p~~~~~~~~il~~-~~~~~~~~ydl~t~ 352 (392)
..+++..++..+.. ..++.+..|+..+.
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 23445555554443 45778888887654
No 111
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=22.64 E-value=6.1e+02 Score=23.36 Aligned_cols=230 Identities=12% Similarity=0.102 Sum_probs=118.1
Q ss_pred CccEEeeccceEEEEEc-CceEEEEcCcccccccCCCCCCC-CCC-----CCCceeeccceeeEeeeCCCCCeEEEEEEE
Q 016291 110 LYPFFGHCHGIVCISLR-YVKVILCNSATREFRELPVSCFH-PSP-----GSEEVVCLPLGFGFGYDPKTNDYKVVRILY 182 (392)
Q Consensus 110 ~~~~~~s~~GLl~~~~~-~~~~~V~NP~T~~~~~LP~~~~~-p~~-----~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~ 182 (392)
-+.+--+-+|-|-+... .+.+-=.||.|++....|-..-. |++ +-...+.-.......+|+.+.+++=+-+-
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp- 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP- 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc-
Confidence 34455556787766653 33566789999999998854432 321 00112210011223345655554444332
Q ss_pred ecCCCCCCCCcEEEEEeCCCCceeEeee----cccccc----eec---cccccCeEE--CceEEEEeecCCCCCceEEEE
Q 016291 183 FIDNPGCESPIKVEMYTLSTDSWRKVNI----NLFAAG----ICF---LQRLESLYF--NRAFHWMAWGDFHESDSFILS 249 (392)
Q Consensus 183 ~~~~~~~~~~~~~~vyss~~~~Wr~~~~----~~~~~~----~~~---~~~~~~v~~--~G~lywl~~~~~~~~~~~il~ 249 (392)
.+.....+..-||+-...-|-+-.. +..+.. .+. -....++++ ||.+|+-...+ ..|..
T Consensus 143 ---~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag-----naiar 214 (353)
T COG4257 143 ---LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG-----NAIAR 214 (353)
T ss_pred ---cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc-----cceEE
Confidence 1112346777888888888854321 111000 000 023344544 78888764333 58999
Q ss_pred EEcCCceEeEEcCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcccceE
Q 016291 250 FDISDETFKKIAGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQKPLV 328 (392)
Q Consensus 250 fD~~~e~~~~i~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~~p~~ 328 (392)
.|..+..-..++.|..... ..+.+ ...-|++-+-.. ... ++-..+-. ..+|.. +.++-......-+.
T Consensus 215 idp~~~~aev~p~P~~~~~---gsRriwsdpig~~wittw----g~g--~l~rfdPs--~~sW~e-ypLPgs~arpys~r 282 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKA---GSRRIWSDPIGRAWITTW----GTG--SLHRFDPS--VTSWIE-YPLPGSKARPYSMR 282 (353)
T ss_pred cccccCCcceecCCCcccc---cccccccCccCcEEEecc----CCc--eeeEeCcc--ccccee-eeCCCCCCCcceee
Confidence 9999998889999985321 11111 111222221110 011 11111111 234543 33432222233455
Q ss_pred EecCCeEEEEe-CCCeEEEEECCCCCEEEeeec
Q 016291 329 FWKSDELVMED-KTGKFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 329 ~~~~~~il~~~-~~~~~~~ydl~t~~~~~v~~~ 360 (392)
+...|.|.+-. ..+-+..||.++.+++++.+.
T Consensus 283 VD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 283 VDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 66667776633 355799999999999998765
No 112
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.58 E-value=4.1e+02 Score=23.89 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCeEEEEEEeee----CCCCceeEEEEeeC-CCCcccceEEe---cCCeEEEEeCCCeEEEEECCCCCEEEeeeccccc
Q 016291 293 VQSLMEIWIMDEV----GVKAKWKKLLTIEG-NSRLQKPLVFW---KSDELVMEDKTGKFCRYNLRTGEIKDLPVRRRLR 364 (392)
Q Consensus 293 ~~~~i~iW~l~~~----~~~~~W~~~~~i~~-~~~~~~p~~~~---~~~~il~~~~~~~~~~ydl~t~~~~~v~~~~~~~ 364 (392)
.+..+.=|...+. +-+..|..+--+.. ...+..+.+++ .++.|+|...|..++..|++++++++..-....+
T Consensus 79 gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 79 GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Q ss_pred eeeEEEEecceeccccCCeeec
Q 016291 365 KYSAVNYLSSLVSVRAGNKLDL 386 (392)
Q Consensus 365 ~~~~~~y~~sl~~~~~~~~~~~ 386 (392)
.-++..-..+---+.|+|..-+
T Consensus 159 vH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred eeeeeecccCcceeecCCCccE
No 113
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=22.15 E-value=1.8e+02 Score=28.94 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=67.5
Q ss_pred EEEEcCcccccccCCCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEEEEEecCCCCCCCCcEEEEEeCCCCceeEee
Q 016291 130 VILCNSATREFRELPVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVRILYFIDNPGCESPIKVEMYTLSTDSWRKVN 209 (392)
Q Consensus 130 ~~V~NP~T~~~~~LP~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~vyss~~~~Wr~~~ 209 (392)
+..=-|.|-+|.++|+....-++ ....-.......+.+++.++.-.+..-. + +......+.+|+.+.+.|..+.
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~-~~~~p~~RgGHQMV~~~~~~CiYLYGGW-d----G~~~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDG-EDNRPGMRGGHQMVIDVQTECVYLYGGW-D----GTQDLADFWAYSVKENQWTCIN 304 (723)
T ss_pred hhhcccccccccccCchhhcccc-cccCccccCcceEEEeCCCcEEEEecCc-c----cchhHHHHHhhcCCcceeEEee
Confidence 44455778888888765531000 0001112245567777765432222111 1 1223557889999999999987
Q ss_pred ec--ccccceeccccccCeEEC--ceEEEEeecCCC------CCceEEEEEEcCCceEeEEcC
Q 016291 210 IN--LFAAGICFLQRLESLYFN--RAFHWMAWGDFH------ESDSFILSFDISDETFKKIAG 262 (392)
Q Consensus 210 ~~--~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~------~~~~~il~fD~~~e~~~~i~~ 262 (392)
.. .|-...| .+.|.-- .+||-+...-++ +.+.-+..||..+..|..+.-
T Consensus 305 ~~t~~PG~RsC----HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~ 363 (723)
T KOG2437|consen 305 RDTEGPGARSC----HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSE 363 (723)
T ss_pred cCCCCCcchhh----hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecc
Confidence 32 2222222 2233222 256666543322 456679999999999998743
No 114
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=22.13 E-value=3.1e+02 Score=25.07 Aligned_cols=99 Identities=10% Similarity=0.162 Sum_probs=57.9
Q ss_pred EEEEEEcCCceEeEEcCCCcccccCCCCceE-EEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCcc
Q 016291 246 FILSFDISDETFKKIAGPSSTLNARKDSREL-IVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRLQ 324 (392)
Q Consensus 246 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~L-~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~~ 324 (392)
.+-+-|+.+-+....- |.+ ......+ +.-+|+||.-.- .+.++-+|-|++.. . .+.++... .-
T Consensus 173 tvKvWnl~~~~l~~~~-~gh----~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~~~k--~----lysl~a~~-~v 236 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTTF-IGH----SGYVNTVTVSPDGSLCASGG----KDGEAMLWDLNEGK--N----LYSLEAFD-IV 236 (315)
T ss_pred eEEEEccCCcchhhcc-ccc----cccEEEEEECCCCCEEecCC----CCceEEEEEccCCc--e----eEeccCCC-eE
Confidence 5666666665544321 111 1111133 345899997533 47889999999753 1 45555332 12
Q ss_pred cceEEecCCeEEEEeCCCeEEEEECCCCC-EEEeeec
Q 016291 325 KPLVFWKSDELVMEDKTGKFCRYNLRTGE-IKDLPVR 360 (392)
Q Consensus 325 ~p~~~~~~~~il~~~~~~~~~~ydl~t~~-~~~v~~~ 360 (392)
..++|.++--.+....+..+-.||+++++ ++++...
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 44667766555556667779999999886 4555543
No 115
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=21.98 E-value=2.1e+02 Score=25.46 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=36.4
Q ss_pred eccceEEEEEcCceEEEEcCcccccccC--CCCCCCCCCCCCceeeccceeeEeeeCCCCCeEEEE
Q 016291 116 HCHGIVCISLRYVKVILCNSATREFREL--PVSCFHPSPGSEEVVCLPLGFGFGYDPKTNDYKVVR 179 (392)
Q Consensus 116 s~~GLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~p~~~~~~~~~~~~~~~l~~d~~~~~ykvv~ 179 (392)
..+|.|.-....+++|..||.|+.-..+ .++.. + . .- ..+++-|+|..++-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~-a---l--~g---~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTV-A---L--SG---TAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccc-c---c--cC---ceEEEecCcccCcEEEEc
Confidence 4577775556666999999999997776 22221 0 0 11 346677788888877774
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.43 E-value=4.8e+02 Score=24.22 Aligned_cols=62 Identities=13% Similarity=0.323 Sum_probs=40.3
Q ss_pred CCeEEEEEEeeeCCCCceeEEEEeeCC-CCcccce-EE-e-cCCeEEE-EeCCCeEEEEECCCCCEEEeeecccc
Q 016291 294 QSLMEIWIMDEVGVKAKWKKLLTIEGN-SRLQKPL-VF-W-KSDELVM-EDKTGKFCRYNLRTGEIKDLPVRRRL 363 (392)
Q Consensus 294 ~~~i~iW~l~~~~~~~~W~~~~~i~~~-~~~~~p~-~~-~-~~~~il~-~~~~~~~~~ydl~t~~~~~v~~~~~~ 363 (392)
+..+++|.++..+.- ++.. .....|+ ++ | ++|.-+| -..++.+-.|||.+++...|+.+...
T Consensus 49 D~tVR~wevq~~g~~--------~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQL--------VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CCceEEEEEecCCcc--------cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc
Confidence 678999999986411 1111 1233443 22 3 4555445 45678899999999999999987644
No 117
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=21.17 E-value=76 Score=28.68 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCCCcHHHHHHHHhcCC-ccccccccccchhhhhhhCChH
Q 016291 4 FSDLPEELVVEILAYLP-ADSLMRFKCVQKSWYSLIAKPK 42 (392)
Q Consensus 4 ~~~LP~Dll~~IL~rLP-~~sl~r~r~VCK~W~~li~~p~ 42 (392)
..+||.+++.+||.||| -.+|.....|--.-..++++..
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 45899999999999999 8888887777555555555543
No 118
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=21.14 E-value=3.8e+02 Score=26.20 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=55.9
Q ss_pred eEEEEEEcCCceEeEE-cCCCcccccCCCCceEEEeCCeEEEEEecCCCCCCeEEEEEEeeeCCCCceeEEEEeeCCCCc
Q 016291 245 SFILSFDISDETFKKI-AGPSSTLNARKDSRELIVLNESLAFVLHDASAVQSLMEIWIMDEVGVKAKWKKLLTIEGNSRL 323 (392)
Q Consensus 245 ~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i~iW~l~~~~~~~~W~~~~~i~~~~~~ 323 (392)
..|...|+.++.-..+ ..+.. ....... -+|+-.+++... ....+||+++-.+ +..+. +.-....
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~-----~~~P~fs-pDG~~l~f~~~r---dg~~~iy~~dl~~-~~~~~----Lt~~~gi 283 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGN-----NGAPAFS-PDGSKLAFSSSR---DGSPDIYLMDLDG-KNLPR----LTNGFGI 283 (425)
T ss_pred ceEEEEeccCCccceeeccCCc-----cCCccCC-CCCCEEEEEECC---CCCccEEEEcCCC-Cccee----cccCCcc
Confidence 3677778777655433 32321 1111222 245444444543 5789999999875 33333 2211111
Q ss_pred -ccceEEecCCeEEEEeCCC---eEEEEECCCCCEEEeeec
Q 016291 324 -QKPLVFWKSDELVMEDKTG---KFCRYNLRTGEIKDLPVR 360 (392)
Q Consensus 324 -~~p~~~~~~~~il~~~~~~---~~~~ydl~t~~~~~v~~~ 360 (392)
..|.-.-++..|+|..... .++.||++++..+++-..
T Consensus 284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 2333222334577765422 699999999999888654
No 119
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=21.13 E-value=1.5e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=21.1
Q ss_pred CeEEEEeCCCeEEEEECCCCCEEEee
Q 016291 333 DELVMEDKTGKFCRYNLRTGEIKDLP 358 (392)
Q Consensus 333 ~~il~~~~~~~~~~ydl~t~~~~~v~ 358 (392)
.-++++...+.++.||.++..+-.+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 45777788899999999998877665
Done!